RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17241
         (93 letters)



>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD
          {Escherichia coli [TaxId: 562]}
          Length = 390

 Score = 28.5 bits (62), Expect = 0.11
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 2  RIATGANMIFDKLKQEQPGFLSKVTIICGDCSKKKLGISDENLKLLQTNVNVIFH 56
          RI  G   I   L+++ P   ++V I  G  S KK G+ D+ L  L+    + F 
Sbjct: 14 RILFGKGAI-AGLREQIPHD-ARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFG 66


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
          {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 23.4 bits (50), Expect = 5.9
 Identities = 4/26 (15%), Positives = 13/26 (50%)

Query: 24 KVTIICGDCSKKKLGISDENLKLLQT 49
          ++ ++ G+ + K  G+  E+    + 
Sbjct: 2  RIDVLKGEKALKASGLVPEHADAFKK 27


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 23.3 bits (49), Expect = 7.4
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 19  PGFLSKV----TIICGDCSKKKLGISDENLK 45
            GF++K+      +C  C K  L   +E ++
Sbjct: 92  VGFIAKIKKVCECVCMHCGKLLLDEHNELMR 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 308,990
Number of extensions: 11219
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 5
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)