BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17242
(172 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340727525|ref|XP_003402092.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
gi|350422935|ref|XP_003493334.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 314
Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/173 (92%), Positives = 164/173 (94%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMGGSV-PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
++PSTPGP PMTP ++ PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 117 IAPSTPGPMTPMTPASADPAILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 176
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 177 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 236
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 237 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 289
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 230 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 289
Query: 80 GAKSEED 86
GAK ++
Sbjct: 290 GAKVRQE 296
>gi|383858146|ref|XP_003704563.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 318
Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/173 (93%), Positives = 163/173 (94%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ PSTPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 121 IGPSTPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 180
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 181 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 240
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 241 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 293
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 234 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 293
Query: 80 GAKSEED 86
GAK ++
Sbjct: 294 GAKVRQE 300
>gi|346470907|gb|AEO35298.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/172 (92%), Positives = 161/172 (93%), Gaps = 4/172 (2%)
Query: 3 PSTPGPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
PSTPGPPMTP+ G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI
Sbjct: 113 PSTPGPPMTPITPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 172
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARIIQKLGF AKFLDFKIQNMVGS
Sbjct: 173 MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGS 232
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 233 CDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 284
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 225 KIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 284
Query: 80 GAK 82
GAK
Sbjct: 285 GAK 287
>gi|380027888|ref|XP_003697647.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 319
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/173 (93%), Positives = 163/173 (94%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ PSTPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 122 IGPSTPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 181
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 182 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 241
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 242 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAKSEED 86
GAK ++
Sbjct: 295 GAKVRQE 301
>gi|66536790|ref|XP_623088.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Apis mellifera]
Length = 319
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 161/173 (93%), Positives = 163/173 (94%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ PSTPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 122 IGPSTPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 181
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 182 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 241
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 242 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAKSEED 86
GAK ++
Sbjct: 295 GAKVRQE 301
>gi|427788157|gb|JAA59530.1| Putative tata-box-binding protein [Rhipicephalus pulchellus]
Length = 308
Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/172 (92%), Positives = 161/172 (93%), Gaps = 4/172 (2%)
Query: 3 PSTPGPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
PSTPGPPMTP+ G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI
Sbjct: 112 PSTPGPPMTPITPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 171
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARIIQKLGF AKFLDFKIQNMVGS
Sbjct: 172 MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGS 231
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 232 CDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 283
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 224 KIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 283
Query: 80 GAK 82
GAK
Sbjct: 284 GAK 286
>gi|241566250|ref|XP_002402125.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
gi|215499985|gb|EEC09479.1| TATA-box binding protein (TBP), component of TFII-D and TFIIIB,
putative [Ixodes scapularis]
Length = 286
Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 159/172 (92%), Positives = 161/172 (93%), Gaps = 4/172 (2%)
Query: 3 PSTPGPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
PSTPGPPMTP+ G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI
Sbjct: 90 PSTPGPPMTPITPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 149
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARIIQKLGF AKFLDFKIQNMVGS
Sbjct: 150 MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIIQKLGFDAKFLDFKIQNMVGS 209
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 210 CDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 261
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 202 KIQNMVGSCDVRFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 261
Query: 80 GAK 82
GAK
Sbjct: 262 GAK 264
>gi|291241110|ref|XP_002740460.1| PREDICTED: TATA box binding protein-like [Saccoglossus kowalevskii]
Length = 293
Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 159/177 (89%), Positives = 163/177 (92%), Gaps = 7/177 (3%)
Query: 1 MSPSTPGPPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR 53
M P+TP PMTP+ D G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR
Sbjct: 91 MYPATPALPMTPMTPATPLSDGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR 150
Query: 54 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQ 113
FAAVIMRIREPRTTALIFSSGKMVCTGAKSE+ SRLAARKYAR+IQKLGFPAKFLDFKIQ
Sbjct: 151 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEDFSRLAARKYARVIQKLGFPAKFLDFKIQ 210
Query: 114 NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 211 NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 267
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 208 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 267
Query: 80 GAKSEED 86
GAK ++
Sbjct: 268 GAKVRKE 274
>gi|307204782|gb|EFN83340.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 304
Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/173 (91%), Positives = 162/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ PSTPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 107 IGPSTPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 166
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE DSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 167 IMRIREPRTTALIFSSGKMVCTGAKSEADSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 226
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVL+HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 227 SCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 279
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 220 KIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 279
Query: 80 GAKSEED 86
GAK ++
Sbjct: 280 GAKVRKE 286
>gi|242022166|ref|XP_002431512.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212516806|gb|EEB18774.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 298
Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/173 (91%), Positives = 164/173 (94%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDM-GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
++P+TP P PMTP + G VPQLQNIVSTVNLGCKLDLKKIA+HARNAEYNPKRFAAV
Sbjct: 101 VAPATPQPMTPMTPASVDSGIVPQLQNIVSTVNLGCKLDLKKIAIHARNAEYNPKRFAAV 160
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGF AKFLDFKIQNMVG
Sbjct: 161 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFAAKFLDFKIQNMVG 220
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 221 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 273
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 214 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 273
Query: 80 GAKSEED 86
GAK ++
Sbjct: 274 GAKVRQE 280
>gi|322801294|gb|EFZ21981.1| hypothetical protein SINV_10030 [Solenopsis invicta]
Length = 306
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/173 (91%), Positives = 162/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ P+TPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 109 IGPATPGPMTPMTPASADPGILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAV 168
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE DSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 169 IMRIREPRTTALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 228
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVL+HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 229 SCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 222 KIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Query: 80 GAK 82
GAK
Sbjct: 282 GAK 284
>gi|332021125|gb|EGI61512.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 305
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/173 (91%), Positives = 162/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ P+TPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 108 IGPATPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 167
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE DSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 168 IMRIREPRTTALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 227
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVL+HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 228 SCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 280
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 221 KIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 280
Query: 80 GAK 82
GAK
Sbjct: 281 GAK 283
>gi|193620436|ref|XP_001949590.1| PREDICTED: TATA-box-binding protein-like [Acyrthosiphon pisum]
Length = 298
Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/172 (91%), Positives = 161/172 (93%), Gaps = 3/172 (1%)
Query: 2 SPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
+P+TP P PMTP G VPQLQNIVSTVNLGC+LDLK IALHARNAE+NPKRFAAVI
Sbjct: 102 NPATPAPMTPMTPASADPGIVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVI 161
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL FPAKFLDFKIQNMVGS
Sbjct: 162 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLSFPAKFLDFKIQNMVGS 221
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 222 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 273
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 214 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 273
Query: 80 GAKSEED 86
GAK ++
Sbjct: 274 GAKVRQE 280
>gi|307182447|gb|EFN69682.1| TATA-box-binding protein [Camponotus floridanus]
Length = 305
Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/173 (90%), Positives = 162/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+ P+TPGP PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 108 IGPATPGPMTPMTPASADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 167
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE DSRLAARKYARIIQKLGFPAKF+DFKIQNMVG
Sbjct: 168 IMRIREPRTTALIFSSGKMVCTGAKSEGDSRLAARKYARIIQKLGFPAKFIDFKIQNMVG 227
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVL+HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 228 SCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 280
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 221 KIQNMVGSCDVKFPIRLEGLVLSHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 280
Query: 80 GAK 82
GAK
Sbjct: 281 GAK 283
>gi|260830471|ref|XP_002610184.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
gi|229295548|gb|EEN66194.1| hypothetical protein BRAFLDRAFT_121529 [Branchiostoma floridae]
Length = 320
Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 153/169 (90%), Positives = 159/169 (94%)
Query: 2 SPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
+P TP P TP + G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI
Sbjct: 137 APMTPMTPATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 196
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
R+PRTTALIFSSGKMVCTGAKSE+ SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV
Sbjct: 197 RDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDV 256
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 257 KFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 305
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L HA+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 246 KIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 305
Query: 80 GAKS 83
GA++
Sbjct: 306 GAQA 309
>gi|321473578|gb|EFX84545.1| hypothetical protein DAPPUDRAFT_194512 [Daphnia pulex]
Length = 312
Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 158/171 (92%), Positives = 159/171 (92%), Gaps = 3/171 (1%)
Query: 3 PSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
PSTP P P TP G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 117 PSTPAPMTPHTPASADPGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 176
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARI+QKL FPAKFLDFKIQNMVGSC
Sbjct: 177 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIVQKLNFPAKFLDFKIQNMVGSC 236
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 237 DVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 228 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Query: 80 GAKSEED 86
GAK ++
Sbjct: 288 GAKVRQE 294
>gi|332374462|gb|AEE62372.1| unknown [Dendroctonus ponderosae]
Length = 318
Score = 315 bits (806), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 159/171 (92%), Positives = 159/171 (92%), Gaps = 3/171 (1%)
Query: 3 PSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
PSTP P PMTP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 123 PSTPSPMTPMTPHSADPGIVPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIM 182
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 183 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 242
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 243 DVKFPIRLEGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 293
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 234 KIQNMVGSCDVKFPIRLEGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 293
Query: 80 GAKSEED 86
GAK ++
Sbjct: 294 GAKVRQE 300
>gi|1729912|sp|P53361.1|TBP_SPOFR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349117|gb|AAA62394.1| DNA-binding protein [Spodoptera frugiperda]
Length = 307
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/173 (91%), Positives = 161/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+S ++P P PMTP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 110 LSQASPAPMTPMTPHSADPGIVPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAV 169
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFKIQNMVG
Sbjct: 170 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVG 229
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 230 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Query: 80 GAKSEED 86
GAK E+
Sbjct: 283 GAKVREE 289
>gi|312382984|gb|EFR28233.1| hypothetical protein AND_04068 [Anopheles darlingi]
Length = 327
Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 154/170 (90%), Positives = 160/170 (94%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M P+TP PMTP + +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 134 MGPATPMTPMTPSE-SAILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMR 192
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFK+QNMVGSCD
Sbjct: 193 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCD 252
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V+FPIRLEGLVLTHG+FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 253 VRFPIRLEGLVLTHGRFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H R + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 243 KVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Query: 80 GAKSEED 86
GAK ++
Sbjct: 303 GAKVRQE 309
>gi|37726730|gb|AAO34516.1| TATA-binding protein isoform 1 [Branchiostoma floridae]
gi|37726734|gb|AAO34519.1| TATA-binding protein isoform 3 [Branchiostoma floridae]
Length = 331
Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/169 (89%), Positives = 158/169 (93%)
Query: 2 SPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
+P TP P TP + G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI
Sbjct: 137 APMTPMTPATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 196
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
R+PRTTALIFSSGKMVCTGAKSE+ SRLAARKYAR++QKLGFP KFLDFKIQNMVGSCDV
Sbjct: 197 RDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDV 256
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 257 KFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 305
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L HA+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 246 KIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 305
Query: 80 GAKSEED 86
GAK E+
Sbjct: 306 GAKVREE 312
>gi|37726732|gb|AAO34517.1| TATA-binding protein isoform 2 [Branchiostoma floridae]
Length = 329
Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/169 (89%), Positives = 158/169 (93%)
Query: 2 SPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
+P TP P TP + G VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI
Sbjct: 135 APMTPMTPATPAEGSGIVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 194
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
R+PRTTALIFSSGKMVCTGAKSE+ SRLAARKYAR++QKLGFP KFLDFKIQNMVGSCDV
Sbjct: 195 RDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCDV 254
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 255 KFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 303
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L HA+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 244 KIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 303
Query: 80 GAKSEED 86
GAK E+
Sbjct: 304 GAKVREE 310
>gi|91081661|ref|XP_969326.1| PREDICTED: similar to DNA-binding protein [Tribolium castaneum]
gi|270006234|gb|EFA02682.1| hypothetical protein TcasGA2_TC008403 [Tribolium castaneum]
Length = 311
Score = 312 bits (800), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 157/173 (90%), Positives = 160/173 (92%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMGGS-VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
M P+TP P PMTP + VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 114 MGPATPSPLTPMTPHSADPNIVPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAV 173
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 174 IMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 233
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 234 SCDVKFPIRLEGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 286
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 227 KIQNMVGSCDVKFPIRLEGLVLTHSSFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 286
Query: 80 GAKSEED 86
GAK ++
Sbjct: 287 GAKIRQE 293
>gi|357612491|gb|EHJ68026.1| TATA-box-binding protein [Danaus plexippus]
Length = 306
Score = 312 bits (799), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/171 (92%), Positives = 160/171 (93%), Gaps = 2/171 (1%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
MSP+ P PMTP G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 112 MSPA-PMTPMTPHSADPGILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIM 170
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFKIQNMVGSC
Sbjct: 171 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVGSC 230
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 231 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 222 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Query: 80 GAKSEED 86
GAK ++
Sbjct: 282 GAKVRQE 288
>gi|402876253|ref|XP_003901890.1| PREDICTED: TATA box-binding protein-like protein 2 [Papio anubis]
Length = 376
Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIM
Sbjct: 181 LAPITPMTPMTPVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIM 240
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSC
Sbjct: 241 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSC 300
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 301 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 292 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Query: 80 GAKSEED 86
GAK +
Sbjct: 352 GAKERSE 358
>gi|109083719|ref|XP_001088740.1| PREDICTED: TATA box-binding protein-like protein 2-like [Macaca
mulatta]
Length = 376
Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIM
Sbjct: 181 LAPITPMTPMTPVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIM 240
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSC
Sbjct: 241 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSC 300
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 301 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 292 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Query: 80 GAKSEED 86
GAK +
Sbjct: 352 GAKERSE 358
>gi|112983068|ref|NP_001037059.1| TATA-box-binding protein [Bombyx mori]
gi|14423945|sp|O45211.1|TBP_BOMMO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|3326928|emb|CAA11000.1| TBP [Bombyx mori]
Length = 307
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/173 (90%), Positives = 162/173 (93%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
+S ++P P P+TP+ G +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 110 LSQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAV 169
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFKIQNMVG
Sbjct: 170 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKIQNMVG 229
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 230 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Query: 80 GAKSEED 86
GAK E+
Sbjct: 283 GAKVREE 289
>gi|355778612|gb|EHH63648.1| hypothetical protein EGM_16656 [Macaca fascicularis]
Length = 376
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIM
Sbjct: 181 LAPITPMTPMTPVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIM 240
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSC
Sbjct: 241 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSC 300
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 301 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 292 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Query: 80 GAKSEED 86
GAK +
Sbjct: 352 GAKERSE 358
>gi|157265561|ref|NP_001098076.1| TATA box-binding protein-like protein 2 [Pan troglodytes]
gi|166987366|sp|A6H907.1|TBPL2_PANTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910843|tpg|DAA06032.1| TPA_inf: TATA box binding protein-like 2 [Pan troglodytes]
Length = 376
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/167 (91%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKF
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 304 PIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 350
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 350
Query: 80 GAK 82
GAK
Sbjct: 351 GAK 353
>gi|355693296|gb|EHH27899.1| hypothetical protein EGK_18211 [Macaca mulatta]
Length = 376
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIM
Sbjct: 181 LAPITPMTPMTPVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIM 240
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSC
Sbjct: 241 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSC 300
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 301 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 292 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 351
Query: 80 GAKSEED 86
GAK +
Sbjct: 352 GAKERSE 358
>gi|44967798|gb|AAS49578.1| TATA box binding protein (TBP)-associated factor [Protopterus
dolloi]
Length = 250
Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 71 MTPMTPVTPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 130
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 131 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 190
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 191 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 241
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 182 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 241
Query: 80 GAK 82
GAK
Sbjct: 242 GAK 244
>gi|157167852|ref|XP_001662432.1| tata-box binding protein [Aedes aegypti]
gi|108871290|gb|EAT35515.1| AAEL012330-PA [Aedes aegypti]
Length = 319
Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 160/170 (94%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M P+TP PMTP + +PQLQNIVSTVNL C+LDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 126 MGPATPMTPMTPSE-PAILPQLQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMR 184
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFK+QNMVGSCD
Sbjct: 185 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCD 244
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V+FPIRLEGLVLTHG+FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 245 VRFPIRLEGLVLTHGKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAKSEED 86
GAK ++
Sbjct: 295 GAKVRQE 301
>gi|158287840|ref|XP_309748.2| AGAP010958-PA [Anopheles gambiae str. PEST]
gi|157019382|gb|EAA45305.2| AGAP010958-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 160/170 (94%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M P+TP PMTP + +PQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 130 MGPATPMTPMTPSE-PAILPQLQNIVSTVNLSCKLDLKKIALHARNAEYNPKRFAAVIMR 188
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGF AKFLDFK+QNMVGSCD
Sbjct: 189 IREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCD 248
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V+FPIRLEGLVLTHG+FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 249 VRFPIRLEGLVLTHGRFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 298
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H R + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 239 KVQNMVGSCDVRFPIRLEGLVLTHGRFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 298
Query: 80 GAKSEED 86
GAK ++
Sbjct: 299 GAKVRQE 305
>gi|229577173|ref|NP_001153317.1| TATA binding protein [Nasonia vitripennis]
Length = 306
Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/173 (90%), Positives = 160/173 (92%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP--PMTPVDMGGSV-PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
M PSTPGP PMTP ++ PQ+QNIVSTVNL KLDLKKIALHARNAE+ PKRFAAV
Sbjct: 109 MGPSTPGPMTPMTPASADPAILPQVQNIVSTVNLNGKLDLKKIALHARNAEFIPKRFAAV 168
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 169 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 228
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 229 SCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L HA+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 222 KIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 281
Query: 80 GAKSEED 86
GAK ++
Sbjct: 282 GAKVRQE 288
>gi|195403015|ref|XP_002060091.1| GJ14917 [Drosophila virilis]
gi|194149413|gb|EDW65108.1| GJ14917 [Drosophila virilis]
Length = 352
Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 156 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 215
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 216 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 275
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 276 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 267 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 327 GAKVRQEIYDAFDKIFPILKKF 348
>gi|195057981|ref|XP_001995362.1| GH23121 [Drosophila grimshawi]
gi|193899568|gb|EDV98434.1| GH23121 [Drosophila grimshawi]
Length = 348
Score = 311 bits (796), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 152 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 211
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 212 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 271
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 272 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 263 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 323 GAKVRQEIYDAFDKIFPILKKF 344
>gi|170044283|ref|XP_001849783.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|170067801|ref|XP_001868625.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167863845|gb|EDS27228.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167867494|gb|EDS30877.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 322
Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 160/170 (94%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M P+TP PMTP + +PQLQNIVSTVNL C+LDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 129 MGPATPMTPMTPSE-PAILPQLQNIVSTVNLSCRLDLKKIALHARNAEYNPKRFAAVIMR 187
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF AKFLDFK+QNMVGSCD
Sbjct: 188 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFTAKFLDFKVQNMVGSCD 247
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V+FPIRLEGLVLTHG+FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 248 VRFPIRLEGLVLTHGKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 297
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 238 KVQNMVGSCDVRFPIRLEGLVLTHGKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 297
Query: 80 GAKSEED 86
GAK ++
Sbjct: 298 GAKVRQE 304
>gi|195380351|ref|XP_002048934.1| Tbp [Drosophila virilis]
gi|194143731|gb|EDW60127.1| Tbp [Drosophila virilis]
Length = 351
Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 155 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 214
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 215 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 274
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 275 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 325
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 266 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 325
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 326 GAKVRQEIYDAFDKIFPILKKF 347
>gi|327262117|ref|XP_003215872.1| PREDICTED: TATA-box-binding protein-like [Anolis carolinensis]
Length = 300
Score = 310 bits (795), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 104 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 163
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 164 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 223
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 224 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 215 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Query: 80 GAK 82
GAK
Sbjct: 275 GAK 277
>gi|119601081|gb|EAW80675.1| TATA box binding protein like 2, isoform CRA_a [Homo sapiens]
Length = 307
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 151/167 (90%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 116 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 175
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 176 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 235
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 236 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 282
Query: 80 GAKSEED 86
GAK +
Sbjct: 283 GAKERSE 289
>gi|3122948|sp|Q92146.1|TBP_TRIGA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|808897|dbj|BAA06554.1| TATA-box binding protein [Trimeresurus gramineus]
gi|1483197|dbj|BAA06560.1| TATA-box binding protein [Trimeresurus gramineus]
Length = 302
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|3122947|sp|Q92117.1|TBP_TRIFL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|1483195|dbj|BAA06555.1| TATA-box binding protein [Trimeresurus flavoviridis]
Length = 300
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 104 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 163
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 164 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 223
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 224 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 215 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Query: 80 GAK 82
GAK
Sbjct: 275 GAK 277
>gi|51948368|ref|NP_001004198.1| TATA-box-binding protein [Rattus norvegicus]
gi|51858685|gb|AAH81939.1| TATA box binding protein [Rattus norvegicus]
gi|149047096|gb|EDL99816.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
gi|149047097|gb|EDL99817.1| TATA box binding protein, isoform CRA_a [Rattus norvegicus]
Length = 318
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 122 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 181
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 182 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 241
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 242 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 233 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Query: 80 GAK 82
GAK
Sbjct: 293 GAK 295
>gi|1729911|sp|P53360.1|TBP_MESAU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|493654|dbj|BAA06287.1| TBP [Mesocricetus auratus]
Length = 318
Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 122 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 181
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 182 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 241
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 242 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 233 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Query: 80 GAK 82
GAK
Sbjct: 293 GAK 295
>gi|195425556|ref|XP_002061064.1| GK10649 [Drosophila willistoni]
gi|194157149|gb|EDW72050.1| GK10649 [Drosophila willistoni]
Length = 351
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 155 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 214
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKF+DFKIQNMVGSC
Sbjct: 215 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFMDFKIQNMVGSC 274
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 275 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 325
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 266 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 325
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 326 GAKVRQEIYDAFDKIFPILKKF 347
>gi|194881988|ref|XP_001975095.1| GG20753 [Drosophila erecta]
gi|190658282|gb|EDV55495.1| GG20753 [Drosophila erecta]
Length = 349
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 153 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 212
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 213 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 272
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 273 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 323
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 264 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 323
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 324 GAKVRQEIYDAFDKIFPILKKF 345
>gi|194755930|ref|XP_001960232.1| GF11627 [Drosophila ananassae]
gi|190621530|gb|EDV37054.1| GF11627 [Drosophila ananassae]
Length = 348
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 152 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 211
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 212 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 271
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 272 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 263 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 323 GAKVRQEIYDAFDKIFPILKKF 344
>gi|148688513|gb|EDL20460.1| TATA box binding protein, isoform CRA_b [Mus musculus]
Length = 323
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 127 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 186
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 187 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 246
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 247 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 297
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 238 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 297
Query: 80 GAK 82
GAK
Sbjct: 298 GAK 300
>gi|2052377|gb|AAB53097.1| transcription factor IID [Mus musculus domesticus]
Length = 318
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 122 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 181
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 182 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 241
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 242 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 233 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Query: 80 GAK 82
GAK
Sbjct: 293 GAK 295
>gi|172073171|ref|NP_038712.3| TATA-box-binding protein [Mus musculus]
gi|135638|sp|P29037.1|TBP_MOUSE RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|220612|dbj|BAA00840.1| TFIID [Mus musculus]
gi|15215158|gb|AAH12685.1| Tbp protein [Mus musculus]
gi|39754750|gb|AAR30866.1| TATA-binding protein [Mus musculus]
gi|148688512|gb|EDL20459.1| TATA box binding protein, isoform CRA_a [Mus musculus]
gi|148688514|gb|EDL20461.1| TATA box binding protein, isoform CRA_a [Mus musculus]
Length = 316
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|332237163|ref|XP_003267773.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Nomascus leucogenys]
Length = 379
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/167 (91%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 188 TPMTPMTPVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 247
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 248 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 307
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 308 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 354
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 295 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 354
Query: 80 GAKSEED 86
GAK +
Sbjct: 355 GAKERSE 361
>gi|17647997|ref|NP_523805.1| TATA binding protein [Drosophila melanogaster]
gi|135636|sp|P20227.1|TBP_DROME RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|158532|gb|AAA28926.1| TATA-consensus-binding transcription factor TFII [Drosophila
melanogaster]
gi|158542|gb|AAA28931.1| TATA-box binding protein [Drosophila melanogaster]
gi|515665|gb|AAA68629.1| TATA-box binding protein [Drosophila melanogaster]
gi|7291324|gb|AAF46754.1| TATA binding protein [Drosophila melanogaster]
gi|17862662|gb|AAL39808.1| LD44083p [Drosophila melanogaster]
gi|220942262|gb|ACL83674.1| Tbp-PA [synthetic construct]
gi|220952470|gb|ACL88778.1| Tbp-PA [synthetic construct]
Length = 353
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 157 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 216
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 217 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 276
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 277 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 327
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 268 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 327
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 328 GAKVRQEIYDAFDKIFPILKKF 349
>gi|355723497|gb|AES07910.1| TATA-box binding protein [Mustela putorius furo]
Length = 315
Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|432114953|gb|ELK36596.1| TATA-box-binding protein [Myotis davidii]
Length = 316
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|1016266|gb|AAA79092.1| TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 158 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 217
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 218 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 277
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 278 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 328
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 269 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 328
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 329 GAKVRQEIYDAFDKIFPILKKF 350
>gi|195585514|ref|XP_002082526.1| GD25175 [Drosophila simulans]
gi|194194535|gb|EDX08111.1| GD25175 [Drosophila simulans]
Length = 352
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 156 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 215
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 216 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 275
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 276 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 267 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 327 GAKVRQEIYDAFDKIFPILKKF 348
>gi|426235063|ref|XP_004011510.1| PREDICTED: TATA-box-binding protein isoform 3 [Ovis aries]
Length = 288
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 92 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 151
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 152 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 211
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 212 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 262
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 203 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 262
Query: 80 GAK 82
GAK
Sbjct: 263 GAK 265
>gi|39930602|ref|NP_950248.1| TATA box-binding protein-like protein 2 [Homo sapiens]
gi|74749326|sp|Q6SJ96.1|TBPL2_HUMAN RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569209|gb|AAR24281.1| TBP-related factor 3 [Homo sapiens]
gi|90296776|gb|ABD93323.1| TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/167 (90%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 304 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Query: 80 GAKSEED 86
GAK +
Sbjct: 351 GAKERSE 357
>gi|397523415|ref|XP_003831727.1| PREDICTED: TATA box-binding protein-like protein 2 [Pan paniscus]
gi|410048302|ref|XP_003952543.1| PREDICTED: TATA box binding protein like 2 [Pan troglodytes]
Length = 375
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/167 (90%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 304 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Query: 80 GAKSEED 86
GAK +
Sbjct: 351 GAKERSE 357
>gi|109658498|gb|AAI17186.1| TATA box binding protein like 2 [Homo sapiens]
gi|109658806|gb|AAI17160.1| TATA box binding protein like 2 [Homo sapiens]
gi|313883330|gb|ADR83151.1| TATA box binding protein like 2 [synthetic construct]
Length = 375
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/167 (90%), Positives = 158/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 304 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Query: 80 GAKSEED 86
GAK +
Sbjct: 351 GAKERSE 357
>gi|80474966|gb|AAI09055.1| TBP protein [Homo sapiens]
gi|190691993|gb|ACE87771.1| TATA box binding protein protein [synthetic construct]
gi|254071353|gb|ACT64436.1| TATA box binding protein protein [synthetic construct]
Length = 288
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 92 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 151
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 152 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 211
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 212 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 262
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 203 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 262
Query: 80 GAK 82
GAK
Sbjct: 263 GAK 265
>gi|326921220|ref|XP_003206860.1| PREDICTED: TATA box-binding protein-like protein 2-like [Meleagris
gallopavo]
Length = 328
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/172 (89%), Positives = 158/172 (91%), Gaps = 4/172 (2%)
Query: 3 PSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
P TP PMTPV + G VPQLQNIVSTVNL CKLDLK IALHARNAEYNPKRFAAVI
Sbjct: 131 PLTPMTPMTPVTPASESSGIVPQLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVI 190
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGS
Sbjct: 191 MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 250
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 251 CDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 243 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Query: 80 GAKSEED 86
GAK +
Sbjct: 303 GAKERSE 309
>gi|348561403|ref|XP_003466502.1| PREDICTED: TATA-box-binding protein-like [Cavia porcellus]
Length = 321
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 125 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 184
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 185 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 244
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 245 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 295
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 236 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 295
Query: 80 GAK 82
GAK
Sbjct: 296 GAK 298
>gi|126310795|ref|XP_001371815.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Monodelphis
domestica]
Length = 308
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 112 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 171
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 172 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 231
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 232 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Query: 80 GAK 82
GAK
Sbjct: 283 GAK 285
>gi|224047784|ref|XP_002190631.1| PREDICTED: TATA-box-binding protein [Taeniopygia guttata]
Length = 302
Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|269980507|gb|ACZ56425.1| TATA-binding protein [Litopenaeus vannamei]
Length = 300
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/173 (90%), Positives = 161/173 (93%), Gaps = 5/173 (2%)
Query: 3 PSTP-GPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
PSTP G PMTP+ G VPQLQNIVSTVNL CKL+LKKIALHARNAEYNPKRFAAV
Sbjct: 103 PSTPIGGPMTPMTPHSADPGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAV 162
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARI+QKLGFPAKF+DFKIQNMVG
Sbjct: 163 IMRIREPRTTALIFSSGKMVCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVG 222
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 223 SCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 275
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 216 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 275
Query: 80 GAK 82
GAK
Sbjct: 276 GAK 278
>gi|3599497|gb|AAC35362.1| TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 159/170 (93%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M+P TP P + + G VPQLQNIVSTVNL CKL+LKKIALHARNAEYNPKRFAAVIMR
Sbjct: 77 MAPLTPATPASS-ESSGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMR 135
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYAR++QKLGF AKFLDFKIQNMVGSCD
Sbjct: 136 IREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCD 195
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 196 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 245
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 186 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 245
Query: 80 GAKSEED 86
GAK ++
Sbjct: 246 GAKVRQE 252
>gi|195486396|ref|XP_002091492.1| GE13685 [Drosophila yakuba]
gi|194177593|gb|EDW91204.1| GE13685 [Drosophila yakuba]
Length = 349
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/171 (91%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 153 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 212
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 213 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 272
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 273 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 323
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 264 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 323
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 324 GAKVRQEIYDAFDKIFPILKKF 345
>gi|291414592|ref|XP_002723543.1| PREDICTED: TATA box binding protein [Oryctolagus cuniculus]
Length = 323
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 127 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 186
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 187 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 246
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 247 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 297
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 238 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 297
Query: 80 GAK 82
GAK
Sbjct: 298 GAK 300
>gi|20799106|dbj|BAB92075.1| TATA binding protein [Hemicentrotus pulcherrimus]
Length = 250
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 159/170 (93%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M+P TP P + + G VPQLQNIVSTVNL C+LDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 56 MAPLTPATPASS-ESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMR 114
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYAR++QKLGF AKFLDFKIQNMVGSCD
Sbjct: 115 IREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCD 174
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 175 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 165 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 224
Query: 80 GAKSEED 86
GAK ++
Sbjct: 225 GAKVRQE 231
>gi|345309405|ref|XP_003428833.1| PREDICTED: LOW QUALITY PROTEIN: TATA-box-binding protein-like
[Ornithorhynchus anatinus]
Length = 308
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 112 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 171
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 172 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 231
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 232 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Query: 80 GAK 82
GAK
Sbjct: 283 GAK 285
>gi|1582692|prf||2119243A TATA box-binding protein
Length = 338
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 142 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 201
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 202 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 261
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 262 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 312
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 253 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 312
Query: 80 GAK 82
GAK
Sbjct: 313 GAK 315
>gi|301779702|ref|XP_002925261.1| PREDICTED: TATA-box-binding protein-like [Ailuropoda melanoleuca]
Length = 324
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 128 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 187
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 188 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 247
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 239 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Query: 80 GAK 82
GAK
Sbjct: 299 GAK 301
>gi|73973822|ref|XP_854525.1| PREDICTED: TATA-box-binding protein isoform 1 [Canis lupus
familiaris]
Length = 324
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 128 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 187
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 188 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 247
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 239 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Query: 80 GAK 82
GAK
Sbjct: 299 GAK 301
>gi|390333257|ref|XP_795391.3| PREDICTED: TATA-box-binding protein-like [Strongylocentrotus
purpuratus]
Length = 262
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 159/170 (93%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M+P TP P + + G VPQLQNIVSTVNL C+LDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 68 MAPLTPATPAS-SESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMR 126
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYAR++QKLGF AKFLDFKIQNMVGSCD
Sbjct: 127 IREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCD 186
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 187 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 177 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 236
Query: 80 GAKSEED 86
GAK ++
Sbjct: 237 GAKVRQE 243
>gi|125807343|ref|XP_001360369.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|195149788|ref|XP_002015837.1| GL11271 [Drosophila persimilis]
gi|54635541|gb|EAL24944.1| GA22088 [Drosophila pseudoobscura pseudoobscura]
gi|194109684|gb|EDW31727.1| GL11271 [Drosophila persimilis]
Length = 345
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M P+TP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 149 MGPATPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 208
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 209 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 268
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 269 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 319
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 260 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 319
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 320 GAKVRQEIYDAFDKIFPILKKF 341
>gi|297679683|ref|XP_002817654.1| PREDICTED: TATA-box-binding protein [Pongo abelii]
Length = 327
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 131 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 190
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 191 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 250
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 251 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 301
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 242 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 301
Query: 80 GAK 82
GAK
Sbjct: 302 GAK 304
>gi|45384144|ref|NP_990434.1| TATA-box-binding protein [Gallus gallus]
gi|3122919|sp|O13270.1|TBP_CHICK RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|2145309|dbj|BAA20296.1| TBP0 [Gallus gallus]
gi|2145310|dbj|BAA20297.1| TBP1 [Gallus gallus]
gi|2145320|dbj|BAA20298.1| TBP [Gallus gallus]
Length = 302
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|326915583|ref|XP_003204094.1| PREDICTED: TATA-box-binding protein-like [Meleagris gallopavo]
Length = 303
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 107 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 166
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 167 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 226
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 227 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 277
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 218 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 277
Query: 80 GAK 82
GAK
Sbjct: 278 GAK 280
>gi|38680348|gb|AAR26545.1| TATA-binding protein [Gallus gallus]
Length = 302
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|426355237|ref|XP_004045035.1| PREDICTED: TATA-box-binding protein isoform 1 [Gorilla gorilla
gorilla]
Length = 331
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 135 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 194
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 195 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 254
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 255 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 305
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 246 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 305
Query: 80 GAK 82
GAK
Sbjct: 306 GAK 308
>gi|80478871|gb|AAI09054.1| TATA box binding protein [Homo sapiens]
gi|82571689|gb|AAI10342.1| TATA box binding protein [Homo sapiens]
gi|119567803|gb|EAW47418.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|119567804|gb|EAW47419.1| TATA box binding protein, isoform CRA_a [Homo sapiens]
gi|190689691|gb|ACE86620.1| TATA box binding protein protein [synthetic construct]
gi|190691053|gb|ACE87301.1| TATA box binding protein protein [synthetic construct]
Length = 338
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 142 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 201
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 202 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 261
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 262 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 312
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 253 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 312
Query: 80 GAK 82
GAK
Sbjct: 313 GAK 315
>gi|37066|emb|CAA38736.1| TFIID [Homo sapiens]
gi|227072|prf||1613451A TATA binding factor TFIID
Length = 335
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 139 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 198
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 199 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 258
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 259 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 309
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 250 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 309
Query: 80 GAK 82
GAK
Sbjct: 310 GAK 312
>gi|4507379|ref|NP_003185.1| TATA-box-binding protein isoform 1 [Homo sapiens]
gi|1351223|sp|P20226.2|TBP_HUMAN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|339492|gb|AAA36731.1| TATA-box binding protein [Homo sapiens]
gi|48145669|emb|CAG33057.1| TBP [Homo sapiens]
Length = 339
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 143 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 202
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 203 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 262
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 263 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 313
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 313
Query: 80 GAK 82
GAK
Sbjct: 314 GAK 316
>gi|397502104|ref|XP_003821708.1| PREDICTED: TATA-box-binding protein isoform 1 [Pan paniscus]
Length = 332
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 136 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 195
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 196 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 255
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 256 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 306
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 247 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 306
Query: 80 GAK 82
GAK
Sbjct: 307 GAK 309
>gi|332264009|ref|XP_003281041.1| PREDICTED: TATA-box-binding protein [Nomascus leucogenys]
Length = 328
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 132 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 191
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 192 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 251
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 252 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 302
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 243 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 302
Query: 80 GAK 82
GAK
Sbjct: 303 GAK 305
>gi|296199650|ref|XP_002747248.1| PREDICTED: TATA-box-binding protein [Callithrix jacchus]
Length = 333
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 137 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 196
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 197 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 256
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 257 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 307
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 248 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 307
Query: 80 GAK 82
GAK
Sbjct: 308 GAK 310
>gi|194390034|dbj|BAG60533.1| unnamed protein product [Homo sapiens]
Length = 316
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|149743967|ref|XP_001499379.1| PREDICTED: TATA-box-binding protein-like isoform 1 [Equus caballus]
Length = 329
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 133 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 192
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 193 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 252
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 253 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 303
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 244 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 303
Query: 80 GAK 82
GAK
Sbjct: 304 GAK 306
>gi|344306713|ref|XP_003422029.1| PREDICTED: TATA-box-binding protein-like [Loxodonta africana]
Length = 324
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 128 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 187
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 188 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 247
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 239 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 298
Query: 80 GAK 82
GAK
Sbjct: 299 GAK 301
>gi|402868789|ref|XP_003898470.1| PREDICTED: TATA-box-binding protein isoform 2 [Papio anubis]
Length = 325
Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 129 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 188
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 189 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 248
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 249 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 299
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 240 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 299
Query: 80 GAK 82
GAK
Sbjct: 300 GAK 302
>gi|281351746|gb|EFB27330.1| hypothetical protein PANDA_014728 [Ailuropoda melanoleuca]
Length = 308
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 112 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 171
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 172 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 231
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 232 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 282
Query: 80 GAK 82
GAK
Sbjct: 283 GAK 285
>gi|426355239|ref|XP_004045036.1| PREDICTED: TATA-box-binding protein isoform 2 [Gorilla gorilla
gorilla]
Length = 311
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 115 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 174
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 175 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 234
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 235 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 285
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 226 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 285
Query: 80 GAK 82
GAK
Sbjct: 286 GAK 288
>gi|397502106|ref|XP_003821709.1| PREDICTED: TATA-box-binding protein isoform 2 [Pan paniscus]
Length = 312
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 116 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 175
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 176 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 235
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 236 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 286
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 227 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 286
Query: 80 GAK 82
GAK
Sbjct: 287 GAK 289
>gi|285026520|ref|NP_001165556.1| TATA-box-binding protein isoform 2 [Homo sapiens]
Length = 319
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 123 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 182
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 183 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 242
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 243 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 293
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 234 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 293
Query: 80 GAK 82
GAK
Sbjct: 294 GAK 296
>gi|115496234|ref|NP_001069210.1| TATA-box-binding protein [Bos taurus]
gi|119367391|sp|Q2HJ52.1|TBP_BOVIN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|87578225|gb|AAI13309.1| TATA box binding protein [Bos taurus]
Length = 319
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 123 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 182
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 183 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 242
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 243 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 293
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 234 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 293
Query: 80 GAK 82
GAK
Sbjct: 294 GAK 296
>gi|149642959|ref|NP_001092323.1| TATA box-binding protein-like protein 2 [Gallus gallus]
gi|148910849|tpg|DAA06035.1| TPA_inf: TATA box binding protein-like 2 [Gallus gallus]
Length = 328
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/172 (89%), Positives = 158/172 (91%), Gaps = 4/172 (2%)
Query: 3 PSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
P TP PMTPV + G VPQLQNIVSTVNL CKLDLK IALHARNAEYNPKRFAAVI
Sbjct: 131 PLTPMTPMTPVTPASESSGIVPQLQNIVSTVNLACKLDLKNIALHARNAEYNPKRFAAVI 190
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGS
Sbjct: 191 MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 250
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 251 CDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 243 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 302
Query: 80 GAKSEED 86
GAK +
Sbjct: 303 GAKERSE 309
>gi|54696180|gb|AAV38462.1| TATA box binding protein [synthetic construct]
Length = 337
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 140 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 199
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 200 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 259
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 260 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 251 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Query: 80 GAK 82
GAK
Sbjct: 311 GAK 313
>gi|426235061|ref|XP_004011509.1| PREDICTED: TATA-box-binding protein isoform 2 [Ovis aries]
Length = 306
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 110 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 169
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 170 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 229
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 230 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 280
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 221 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 280
Query: 80 GAK 82
GAK
Sbjct: 281 GAK 283
>gi|426235059|ref|XP_004011508.1| PREDICTED: TATA-box-binding protein isoform 1 [Ovis aries]
Length = 314
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 118 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 177
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 178 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 237
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 238 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 288
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 229 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 288
Query: 80 GAK 82
GAK
Sbjct: 289 GAK 291
>gi|147906485|ref|NP_001089038.1| TATA box binding protein [Xenopus laevis]
gi|57032530|gb|AAH88819.1| LOC503680 protein [Xenopus laevis]
Length = 296
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 100 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 159
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 160 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 219
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 220 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 270
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 211 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 270
Query: 80 GAK 82
GAK
Sbjct: 271 GAK 273
>gi|355562211|gb|EHH18843.1| hypothetical protein EGK_15529 [Macaca mulatta]
Length = 326
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/173 (88%), Positives = 158/173 (91%), Gaps = 4/173 (2%)
Query: 2 SPSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
SP TP P+TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAV
Sbjct: 128 SPVTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAV 187
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG
Sbjct: 188 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 247
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 SCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 241 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Query: 80 GAK 82
GAK
Sbjct: 301 GAK 303
>gi|440894479|gb|ELR46921.1| TATA-box-binding protein [Bos grunniens mutus]
Length = 312
Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 116 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 175
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 176 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 235
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 236 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 286
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 227 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 286
Query: 80 GAK 82
GAK
Sbjct: 287 GAK 289
>gi|62858635|ref|NP_001016339.1| TATA-box-binding protein [Xenopus (Silurana) tropicalis]
gi|123907365|sp|Q28GG8.1|TBP_XENTR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|89266978|emb|CAJ83650.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|169642632|gb|AAI60510.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213624491|gb|AAI71176.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
gi|213627356|gb|AAI71174.1| TATA box binding protein [Xenopus (Silurana) tropicalis]
Length = 297
Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 101 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 160
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 161 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 220
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 221 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 271
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 212 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 271
Query: 80 GAK 82
GAK
Sbjct: 272 GAK 274
>gi|402868787|ref|XP_003898469.1| PREDICTED: TATA-box-binding protein isoform 1 [Papio anubis]
Length = 335
Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 139 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 198
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 199 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 258
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 259 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 309
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 250 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 309
Query: 80 GAK 82
GAK
Sbjct: 310 GAK 312
>gi|344273811|ref|XP_003408712.1| PREDICTED: TATA box-binding protein-like protein 2-like [Loxodonta
africana]
Length = 344
Score = 308 bits (790), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 150/163 (92%), Positives = 156/163 (95%), Gaps = 1/163 (0%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIREPRTT
Sbjct: 157 PMTPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTT 216
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+FPIRL
Sbjct: 217 ALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRL 276
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 277 EGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 319
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 260 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 319
Query: 80 GAK 82
GAK
Sbjct: 320 GAK 322
>gi|348534076|ref|XP_003454529.1| PREDICTED: TATA-box-binding protein-like [Oreochromis niloticus]
Length = 333
Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 137 LTPMTPITPATPASETSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 196
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 197 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 256
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 257 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 307
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 248 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 307
Query: 80 GAK 82
GAK
Sbjct: 308 GAK 310
>gi|291190590|ref|NP_001167145.1| TATA-box-binding protein [Salmo salar]
gi|223648344|gb|ACN10930.1| TATA-box-binding protein [Salmo salar]
Length = 299
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 103 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 162
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 163 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 222
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 223 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 273
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 214 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 273
Query: 80 GAK 82
GAK
Sbjct: 274 GAK 276
>gi|195122370|ref|XP_002005684.1| GI18943 [Drosophila mojavensis]
gi|193910752|gb|EDW09619.1| GI18943 [Drosophila mojavensis]
Length = 348
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLK+IALHARNAEYNPKRFAAVIM
Sbjct: 152 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKRIALHARNAEYNPKRFAAVIM 211
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 212 RIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 271
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 272 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 263 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 322
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 323 GAKVRQEIYDAFDKIFPILKKF 344
>gi|29477183|gb|AAH50136.1| Tbp protein [Mus musculus]
Length = 316
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VP+LQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPRLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|109073359|ref|XP_001085368.1| PREDICTED: TATA-box-binding protein isoform 3 [Macaca mulatta]
gi|75075688|sp|Q4R4F5.1|TBP_MACFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|67968013|dbj|BAE00488.1| unnamed protein product [Macaca fascicularis]
gi|67971336|dbj|BAE02010.1| unnamed protein product [Macaca fascicularis]
gi|355749048|gb|EHH53531.1| hypothetical protein EGM_14191 [Macaca fascicularis]
Length = 326
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 153/173 (88%), Positives = 158/173 (91%), Gaps = 4/173 (2%)
Query: 2 SPSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
SP TP P+TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAV
Sbjct: 128 SPVTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAV 187
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG
Sbjct: 188 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 247
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 SCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 241 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Query: 80 GAK 82
GAK
Sbjct: 301 GAK 303
>gi|395839043|ref|XP_003792412.1| PREDICTED: TATA-box-binding protein [Otolemur garnettii]
Length = 326
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 130 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 189
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 190 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 249
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 250 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 241 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Query: 80 GAK 82
GAK
Sbjct: 301 GAK 303
>gi|403305888|ref|XP_003943481.1| PREDICTED: TATA-box-binding protein [Saimiri boliviensis
boliviensis]
Length = 326
Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 153/173 (88%), Positives = 158/173 (91%), Gaps = 4/173 (2%)
Query: 2 SPSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
SP TP P+TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAV
Sbjct: 128 SPVTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAV 187
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG
Sbjct: 188 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 247
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 248 SCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 241 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Query: 80 GAK 82
GAK
Sbjct: 301 GAK 303
>gi|41056135|ref|NP_956390.1| TATA-box-binding protein [Danio rerio]
gi|82187626|sp|Q7SXL3.1|TBP_DANRE RecName: Full=TATA-box-binding protein; Short=zTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
Short=zfTBF; AltName: Full=Transcription initiation
factor TFIID TBP subunit
gi|33416871|gb|AAH55549.1| TATA box binding protein [Danio rerio]
gi|37727187|gb|AAO34524.1| TATA-binding protein [Danio rerio]
gi|41351472|gb|AAH65860.1| TATA box binding protein [Danio rerio]
Length = 302
Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|26351419|dbj|BAC39346.1| unnamed protein product [Mus musculus]
Length = 316
Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL RNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRPRNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 239
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 240 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 231 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 290
Query: 80 GAK 82
GAK
Sbjct: 291 GAK 293
>gi|432852539|ref|XP_004067298.1| PREDICTED: TATA-box-binding protein [Oryzias latipes]
Length = 305
Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 109 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 168
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 169 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 228
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 229 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 279
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 220 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 279
Query: 80 GAK 82
GAK
Sbjct: 280 GAK 282
>gi|195346517|ref|XP_002039804.1| GM15696 [Drosophila sechellia]
gi|194135153|gb|EDW56669.1| GM15696 [Drosophila sechellia]
Length = 352
Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 156 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIM 215
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSE+ SRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC
Sbjct: 216 RIREPRTTALIFSSGKMVCTGAKSEDSSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 275
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 276 DVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 267 KIQNMVGSCDVKFPIRLEGLVLTHCNFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 326
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 327 GAKVRQEIYDAFDKIFPILKKF 348
>gi|157265563|ref|NP_001098077.1| TATA-box-binding protein [Pan troglodytes]
gi|148910853|tpg|DAA06037.1| TPA_inf: TATA box binding protein [Pan troglodytes]
Length = 336
Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNP RFAAVIM
Sbjct: 140 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPTRFAAVIM 199
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 200 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 259
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 260 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 251 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Query: 80 GAK 82
GAK
Sbjct: 311 GAK 313
>gi|147900802|ref|NP_001084369.1| TATA-box-binding protein [Xenopus laevis]
gi|135642|sp|P27633.1|TBP_XENLA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|65149|emb|CAA46832.1| transcription factor [Xenopus laevis]
gi|76779674|gb|AAI06645.1| TFIIDtau protein [Xenopus laevis]
Length = 297
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 101 ITPMTPISPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 160
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 161 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 220
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 221 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 271
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 212 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 271
Query: 80 GAK 82
GAK
Sbjct: 272 GAK 274
>gi|153792245|ref|NP_001093264.1| TATA box binding protein [Takifugu rubripes]
gi|148910855|tpg|DAA06038.1| TPA_inf: TATA box binding protein [Takifugu rubripes]
Length = 301
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 105 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 164
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 165 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 224
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 225 DVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 275
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 216 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 275
Query: 80 GAK 82
GAK
Sbjct: 276 GAK 278
>gi|17298076|dbj|BAB78512.1| TATA-box binding protein [Oryzias latipes]
Length = 320
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 124 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 183
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 184 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 243
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 244 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 294
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 294
Query: 80 GAK 82
GAK
Sbjct: 295 GAK 297
>gi|449667471|ref|XP_002160884.2| PREDICTED: TATA-box-binding protein-like isoform 1 [Hydra
magnipapillata]
Length = 255
Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/184 (83%), Positives = 162/184 (88%), Gaps = 14/184 (7%)
Query: 1 MSPSTP--GPPMTPV------------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARN 46
++P+TP GPPMTP+ + G +PQLQNIVSTVNL CKLDLKKIALHARN
Sbjct: 47 IAPNTPMIGPPMTPLTPMVAPMTPMSAEASGIIPQLQNIVSTVNLSCKLDLKKIALHARN 106
Query: 47 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAK 106
AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR+IQKLGFPAK
Sbjct: 107 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAK 166
Query: 107 FLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGK 166
F+DFKIQN+VGSCDVKFPIRLEGLVL H QF SYEPELFPGLIYRMVKPRIVLLIFVSGK
Sbjct: 167 FVDFKIQNIVGSCDVKFPIRLEGLVLAHSQFCSYEPELFPGLIYRMVKPRIVLLIFVSGK 226
Query: 167 VVLT 170
VVLT
Sbjct: 227 VVLT 230
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ + L H++ Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 171 KIQNIVGSCDVKFPIRLEGLVLAHSQFCSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 230
Query: 80 GAK 82
GAK
Sbjct: 231 GAK 233
>gi|2897847|gb|AAC03409.1| transcription factor IID [Homo sapiens]
Length = 339
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL RNAEYNPKRFAAVIM
Sbjct: 143 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIM 202
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 203 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 262
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 263 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 313
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 254 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 313
Query: 80 GAK 82
GAK
Sbjct: 314 GAK 316
>gi|126282854|ref|XP_001376601.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Monodelphis domestica]
Length = 342
Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 157/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV G G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 151 TPLTPMTPVSEGSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 210
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARK+AR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 211 PRTTALIFSSGKMVCTGAKSEELSRLAARKFARVVQKLGFPARFLDFKIQNMVGSCDVRF 270
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLE LVLTH QFSSYEPELFPGL+YRMVKPRIVLLIFVSGKVVLT
Sbjct: 271 PIRLESLVLTHQQFSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLT 317
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F ++ R+ +PR LIF SGK+V T
Sbjct: 258 KIQNMVGSCDVRFPIRLESLVLTHQQFSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLT 317
Query: 80 GAK 82
GAK
Sbjct: 318 GAK 320
>gi|426376979|ref|XP_004055257.1| PREDICTED: TATA box-binding protein-like protein 2 [Gorilla gorilla
gorilla]
Length = 375
Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 157/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIAL A+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALQAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 304 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Query: 80 GAKSEED 86
GAK +
Sbjct: 351 GAKERSE 357
>gi|54696182|gb|AAV38463.1| TATA box binding protein [Homo sapiens]
Length = 336
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 140 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 199
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 200 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 259
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEG VLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 260 DVKFPIRLEGPVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 251 KIQNMVGSCDVKFPIRLEGPVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 310
Query: 80 GAK 82
GAK
Sbjct: 311 GAK 313
>gi|431895824|gb|ELK05242.1| TATA box-binding protein-like protein 2 [Pteropus alecto]
Length = 342
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 149/167 (89%), Positives = 156/167 (93%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV + G +PQLQNIVST NL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 151 TPMTPMTPVSECSGIMPQLQNIVSTANLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 210
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 211 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 270
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 271 SIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 317
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 258 KIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 317
Query: 80 GAKSEED 86
GAK +
Sbjct: 318 GAKERSE 324
>gi|44969211|gb|AAS49602.1| TATA box-binding protein [Scyliorhinus canicula]
Length = 253
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P T P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 70 MTPMTLITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 129
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGA+SEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 130 RIREPRTTALIFSSGKMVCTGARSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 189
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 190 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 240
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 181 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 240
Query: 80 GAK 82
GAK
Sbjct: 241 GAK 243
>gi|297695161|ref|XP_002824816.1| PREDICTED: TATA box-binding protein-like protein 2 [Pongo abelii]
Length = 375
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 157/167 (94%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 184 TPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 243
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 244 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 303
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 304 SIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 291 KIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 350
Query: 80 GAKSEED 86
GAK +
Sbjct: 351 GAKERSE 357
>gi|315418834|gb|ADU15470.1| TATA box binding protein [Penaeus monodon]
Length = 300
Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 155/173 (89%), Positives = 160/173 (92%), Gaps = 5/173 (2%)
Query: 3 PSTP-GPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
PSTP G PMTP+ G VPQLQNIVSTVNL CKL+LKKIALHARNAEYNPKRFAAV
Sbjct: 103 PSTPIGGPMTPMTPHSADPGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAV 162
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSE+DSRLAARKYARI+QKLGFPAKF+DFKIQNMVG
Sbjct: 163 IMRIREPRTTALIFSSGKMVCTGAKSEQDSRLAARKYARIVQKLGFPAKFMDFKIQNMVG 222
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVS KVVLT
Sbjct: 223 SCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSRKVVLT 275
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF S K+V T
Sbjct: 216 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSRKVVLT 275
Query: 80 GAK 82
GAK
Sbjct: 276 GAK 278
>gi|147902539|ref|NP_001080921.1| TATA box-binding protein-like protein 2 [Xenopus laevis]
gi|75570954|sp|Q5UE94.1|TBPL2_XENLA RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|54402365|gb|AAV34742.1| TATA-binding protein 2 [Xenopus laevis]
Length = 320
Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/158 (93%), Positives = 151/158 (95%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 137 AESSGIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 196
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV+FPIRLEGLVL
Sbjct: 197 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVL 256
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 257 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAK 82
GAK
Sbjct: 295 GAK 297
>gi|47551211|ref|NP_999786.1| TATA-box-binding protein [Strongylocentrotus purpuratus]
gi|3122940|sp|P91809.1|TBP_STRPU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1840134|gb|AAB47272.1| TATA binding protein [Strongylocentrotus purpuratus]
Length = 265
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 158/170 (92%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M+P TP P + + G VPQLQNIVSTVNL C+LDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 71 MAPLTPATPAS-SESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMR 129
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAK E++SRLAARKYAR++QKLGF AKFLDFKIQNMVGSCD
Sbjct: 130 IREPRTTALIFSSGKMVCTGAKREDNSRLAARKYARVVQKLGFAAKFLDFKIQNMVGSCD 189
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 190 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 239
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 180 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 239
Query: 80 GAKSEED 86
GAK ++
Sbjct: 240 GAKVRQE 246
>gi|62859883|ref|NP_001017309.1| TATA box-binding protein-like protein 2 [Xenopus (Silurana)
tropicalis]
gi|123915918|sp|Q28DH2.1|TBPL2_XENTR RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; Short=xTBPL2; AltName:
Full=TATA box-binding protein-related factor 3;
Short=TBP-related factor 3
gi|89274001|emb|CAJ81377.1| Novel protein similar to TBP [Xenopus (Silurana) tropicalis]
Length = 322
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/158 (93%), Positives = 151/158 (95%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 139 AESSGIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 198
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV+FPIRLEGLVL
Sbjct: 199 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVL 258
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 259 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 296
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 237 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 296
Query: 80 GAKSEED 86
GAK +
Sbjct: 297 GAKERSE 303
>gi|296215093|ref|XP_002807283.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2 [Callithrix jacchus]
Length = 373
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 150/166 (90%), Positives = 156/166 (93%), Gaps = 4/166 (2%)
Query: 9 PMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP 64
PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIREP
Sbjct: 183 PMTPVTSVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREP 242
Query: 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFP 124
RTTALIFSSGKMVCTGA+SEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDVKFP
Sbjct: 243 RTTALIFSSGKMVCTGARSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVKFP 302
Query: 125 IRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 303 IRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 348
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 289 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 348
Query: 80 GAKSEED 86
GAK +
Sbjct: 349 GAKERSE 355
>gi|348573495|ref|XP_003472526.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cavia
porcellus]
Length = 397
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/181 (84%), Positives = 159/181 (87%), Gaps = 12/181 (6%)
Query: 2 SPSTPGP--------PMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEY 49
SP P P PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEY
Sbjct: 192 SPENPSPHTLPLSIAPMTPVAPASECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEY 251
Query: 50 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLD 109
NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLD
Sbjct: 252 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLD 311
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
FKIQNMVGSCDV+F IRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL
Sbjct: 312 FKIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 371
Query: 170 T 170
T
Sbjct: 372 T 372
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 313 KIQNMVGSCDVRFSIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 372
Query: 80 GAKSEED 86
GAK +
Sbjct: 373 GAKERSE 379
>gi|3122921|sp|O17488.1|TBP_ARTSF RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2623958|emb|CAA05488.1| TATA-binding protein [Artemia franciscana]
Length = 275
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/172 (88%), Positives = 158/172 (91%), Gaps = 4/172 (2%)
Query: 3 PSTPGP--PMTPVDMG--GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
P TP P P TP + G +P L+NIVSTVNLGC+LDLKKIAL ARNAEYNPKRFAAVI
Sbjct: 80 PGTPAPATPHTPASVADPGIIPVLENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVI 139
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARI+QKLGF AKFLDFKIQNMVGS
Sbjct: 140 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIVQKLGFSAKFLDFKIQNMVGS 199
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 200 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 251
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 192 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 251
Query: 80 GAKSEED 86
GAK ++
Sbjct: 252 GAKVRQE 258
>gi|226088558|dbj|BAH37024.1| TATA-box binding protein [Oryzias latipes]
Length = 305
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 109 VTPMTPIAPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 168
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLD KIQNMVGSC
Sbjct: 169 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDLKIQNMVGSC 228
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 229 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 279
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 220 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 279
Query: 80 GAK 82
GAK
Sbjct: 280 GAK 282
>gi|164429967|gb|ABY55311.1| TATA-binding protein 1 [Gallus gallus]
Length = 302
Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 158/171 (92%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEY+PKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR+++KLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVRKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|395535316|ref|XP_003769674.1| PREDICTED: TATA-box-binding protein [Sarcophilus harrisii]
Length = 309
Score = 305 bits (781), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/172 (88%), Positives = 158/172 (91%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 112 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 171
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 172 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 231
Query: 120 DVKFPIRLEGLVLTHGQF-SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QF SSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 232 DVKFPIRLEGLVLTHQQFSSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 283
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHAR--NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QN+V + ++ + L+ + L + ++ Y P+ F +I R+ +PR LIF SGK+V
Sbjct: 223 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVL 282
Query: 79 TGAK 82
TGAK
Sbjct: 283 TGAK 286
>gi|39725630|tpg|DAA02137.1| TPA_exp: TBP-related factor 3 [Xenopus laevis]
Length = 320
Score = 305 bits (780), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 146/158 (92%), Positives = 151/158 (95%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 137 AESSGIVPQLQNIVSTVNLACKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 196
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV+FPIRLEGLVL
Sbjct: 197 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFPIRLEGLVL 256
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QF+SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 257 THQQFNSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVGSCDVRFPIRLEGLVLTHQQFNSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAK 82
GAK
Sbjct: 295 GAK 297
>gi|378401306|emb|CBK13156.1| TATA binding protein, partial [Oreochromis mossambicus]
Length = 247
Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 149/170 (87%), Positives = 157/170 (92%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEY+PKRFAAVIM
Sbjct: 78 LTPMTPITPATPASETSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYDPKRFAAVIM 137
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG+C
Sbjct: 138 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGNC 197
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVL
Sbjct: 198 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVL 247
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y+P+ F +I R+ +PR LIF SGK+V T
Sbjct: 99 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYDPKRFAAVIMRIREPRTTALIFSSGKMVCT 157
>gi|291403917|ref|XP_002718356.1| PREDICTED: TATA box binding protein like 2-like [Oryctolagus
cuniculus]
Length = 345
Score = 304 bits (779), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 151/168 (89%), Positives = 158/168 (94%), Gaps = 2/168 (1%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 153 TPMTPMTPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 212
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLG+PA+FLDFKIQNMVGSCDV+F
Sbjct: 213 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGYPARFLDFKIQNMVGSCDVRF 272
Query: 124 PIRLEGLVLTHGQF-SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QF SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 273 PIRLEGLVLTHQQFSSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 320
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHAR--NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QN+V + ++ + L+ + L + ++ Y P+ F +I R+ +PR LIF SGK+V
Sbjct: 260 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 319
Query: 79 TGAKSEED 86
TGAK +
Sbjct: 320 TGAKERSE 327
>gi|444728605|gb|ELW69055.1| TATA box-binding protein-like protein 2 [Tupaia chinensis]
Length = 378
Score = 304 bits (778), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 156/167 (93%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP + VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 187 TPMMPMTPASECSEIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 246
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 247 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 306
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 307 PIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 353
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 294 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 353
Query: 80 GAKSEED 86
GAK +
Sbjct: 354 GAKERSE 360
>gi|225719098|gb|ACO15395.1| TATA-box-binding protein [Caligus clemensi]
Length = 323
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 158/170 (92%), Gaps = 1/170 (0%)
Query: 2 SPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+P+TP P M G VPQLQNIVSTV+LGCKLDLKKIALHARNAEYNPKRFAAVIMR
Sbjct: 129 APATPLSLQPPGSMDPGIVPQLQNIVSTVSLGCKLDLKKIALHARNAEYNPKRFAAVIMR 188
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARI+QKLGFPA+F DFKIQNMVGSCD
Sbjct: 189 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIVQKLGFPARFKDFKIQNMVGSCD 248
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTH QFSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 249 VKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 298
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 239 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 298
Query: 80 GAKSEED 86
GAK ++
Sbjct: 299 GAKVRQE 305
>gi|33323635|gb|AAQ07596.1|AF503449_1 TATA-binding protein [Danio rerio]
Length = 302
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 157/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 106 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMV TGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVGTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|37726863|gb|AAO34522.1| TATA-binding protein [Ginglymostoma cirratum]
Length = 302
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/171 (88%), Positives = 156/171 (91%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAE PKRFAAVIM
Sbjct: 106 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEKKPKRFAAVIM 165
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 166 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 225
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 226 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 217 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 276
Query: 80 GAK 82
GAK
Sbjct: 277 GAK 279
>gi|156392660|ref|XP_001636166.1| predicted protein [Nematostella vectensis]
gi|156223266|gb|EDO44103.1| predicted protein [Nematostella vectensis]
Length = 194
Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 157/170 (92%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M P TP PMT + G +PQLQNIVSTVNLGCKLDLKKIAL ARNAEYNPKRFAAVIMR
Sbjct: 1 MPPLTPMTPMTG-EPSGILPQLQNIVSTVNLGCKLDLKKIALQARNAEYNPKRFAAVIMR 59
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSEE S+LAARKYAR++QKLGFPAKF +FKIQNMVGSCD
Sbjct: 60 IREPRTTALIFSSGKMVCTGAKSEEQSKLAARKYARVVQKLGFPAKFTEFKIQNMVGSCD 119
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVL HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 120 VKFPIRLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 169
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 110 KIQNMVGSCDVKFPIRLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 169
Query: 80 GAKSEED 86
GAK ++
Sbjct: 170 GAKVRQE 176
>gi|224051924|ref|XP_002200431.1| PREDICTED: TATA box-binding protein-like protein 2 [Taeniopygia
guttata]
Length = 322
Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/181 (83%), Positives = 158/181 (87%), Gaps = 12/181 (6%)
Query: 2 SPSTPG-----PPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEY 49
SP PG PMTP+ + G VPQLQNIVSTVNL CKLDLK IAL ARNAEY
Sbjct: 116 SPEAPGVCPPLAPMTPITPATSASESSGIVPQLQNIVSTVNLACKLDLKNIALRARNAEY 175
Query: 50 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLD 109
NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLD
Sbjct: 176 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLD 235
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
FKIQNMVGSCDV+FPIRLEGLVLTH QFSSYEPELFPGL+YRMVKPRIVLLIFVSGKVVL
Sbjct: 236 FKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVL 295
Query: 170 T 170
T
Sbjct: 296 T 296
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F ++ R+ +PR LIF SGK+V T
Sbjct: 237 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLVYRMVKPRIVLLIFVSGKVVLT 296
Query: 80 GAKSEED 86
GAK +
Sbjct: 297 GAKDRSE 303
>gi|297479762|ref|XP_002690959.1| PREDICTED: TATA box binding protein like 2 [Bos taurus]
gi|296483126|tpg|DAA25241.1| TPA: TATA box binding protein like 2-like [Bos taurus]
Length = 341
Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/167 (88%), Positives = 154/167 (92%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PM P+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 150 TPMTPMAPISECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 209
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDF IQNMV SCDV+F
Sbjct: 210 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRF 269
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI LEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 270 PISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 316
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 258 IQNMVASCDVRFPISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 317
Query: 81 AKSEED 86
AK D
Sbjct: 318 AKKRSD 323
>gi|15826400|pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 150/157 (95%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
M G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSS
Sbjct: 3 HMSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 62
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT
Sbjct: 63 GKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 122
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 123 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 100 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Query: 80 GAK 82
GAK
Sbjct: 160 GAK 162
>gi|194670970|ref|XP_871896.3| PREDICTED: TATA box binding protein like 2 [Bos taurus]
Length = 377
Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/167 (88%), Positives = 154/167 (92%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PM P+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 186 TPMTPMAPISECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 245
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDF IQNMV SCDV+F
Sbjct: 246 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRF 305
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI LEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 306 PISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 352
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 294 IQNMVASCDVRFPISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 353
Query: 81 AKSEED 86
AK D
Sbjct: 354 AKKRSD 359
>gi|440897977|gb|ELR49561.1| TATA box-binding protein-like protein 2, partial [Bos grunniens
mutus]
Length = 374
Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/167 (88%), Positives = 154/167 (92%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PM P+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 183 TPMTPMAPISECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 242
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDF IQNMV SCDV+F
Sbjct: 243 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRF 302
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI LEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 303 PISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 349
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 291 IQNMVASCDVRFPISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 350
Query: 81 AKSEED 86
AK D
Sbjct: 351 AKKRSD 356
>gi|37726742|gb|AAO34521.1| TATA-binding protein [Eptatretus stoutii]
Length = 324
Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 151/157 (96%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS
Sbjct: 142 ESSGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 201
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMVCTGAKSE+ SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT
Sbjct: 202 GKMVCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 261
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 262 HQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 239 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 298
Query: 80 GAK 82
GAK
Sbjct: 299 GAK 301
>gi|17298078|dbj|BAB78513.1| TATA-box binding protein [Lethenteron reissneri]
Length = 301
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/154 (95%), Positives = 150/154 (97%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 122 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 181
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE+ SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 182 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 241
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 242 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 275
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 216 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 275
Query: 80 GAK 82
GAK
Sbjct: 276 GAK 278
>gi|345803952|ref|XP_853710.2| PREDICTED: TATA box binding protein like 2 [Canis lupus familiaris]
Length = 431
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/167 (89%), Positives = 156/167 (93%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 240 TPMTPMTPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 299
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F
Sbjct: 300 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRF 359
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
I LEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 360 AISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 406
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 347 KIQNMVGSCDVRFAISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 406
Query: 80 GAKSEED 86
GAK +
Sbjct: 407 GAKERSE 413
>gi|44967740|gb|AAS49577.1| TATA box binding protein (TBP)-associated factor [Latimeria
chalumnae]
Length = 249
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/171 (87%), Positives = 155/171 (90%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P T P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 70 MTPMTLITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 129
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 130 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 189
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH Q SSYEPELFPGLIYRM+KPRIVLL FVSGKVVLT
Sbjct: 190 DVKFPIRLEGLVLTHQQSSSYEPELFPGLIYRMIKPRIVLLXFVSGKVVLT 240
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H +++ Y P+ F +I R+ +PR L F SGK+V T
Sbjct: 181 KIQNMVGSCDVKFPIRLEGLVLTHQQSSSYEPELFPGLIYRMIKPRIVLLXFVSGKVVLT 240
Query: 80 GAK 82
GAK
Sbjct: 241 GAK 243
>gi|37726728|gb|AAO34515.1| TATA-binding protein [Petromyzon marinus]
Length = 292
Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/154 (95%), Positives = 150/154 (97%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 113 GIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 172
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE+ SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 173 VCTGAKSEDQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 232
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 233 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 266
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 207 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 266
Query: 80 GAK 82
GAK
Sbjct: 267 GAK 269
>gi|354486300|ref|XP_003505319.1| PREDICTED: TATA-box-binding protein-like [Cricetulus griseus]
gi|344249386|gb|EGW05490.1| TATA-box-binding protein [Cricetulus griseus]
Length = 315
Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 150/157 (95%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSS
Sbjct: 133 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 192
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT
Sbjct: 193 GKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 252
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 253 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 289
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 230 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 289
Query: 80 GAK 82
GAK
Sbjct: 290 GAK 292
>gi|426234189|ref|XP_004011082.1| PREDICTED: TATA box-binding protein-like protein 2 [Ovis aries]
Length = 443
Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/167 (88%), Positives = 154/167 (92%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PM P+ + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 252 TPMTPMAPISECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 311
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDF IQNMV SCDV+F
Sbjct: 312 PRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFTIQNMVASCDVRF 371
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI LEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 372 PISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 418
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 360 IQNMVASCDVRFPISLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG 419
Query: 81 AKSEED 86
AK D
Sbjct: 420 AKKRSD 425
>gi|351714662|gb|EHB17581.1| TATA-box-binding protein [Heterocephalus glaber]
Length = 300
Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/171 (87%), Positives = 155/171 (90%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 104 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 163
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE S ARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 164 RIREPRTTALIFSSGKMVCTGAKSEEQSSRLARKYARVVQKLGFPAKFLDFKIQNMVGSC 223
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 224 DVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 215 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 274
Query: 80 GAK 82
GAK
Sbjct: 275 GAK 277
>gi|1942827|pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 150/154 (97%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE+SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 62 VCTGAKSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 96 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Query: 80 GAK 82
GAK
Sbjct: 156 GAK 158
>gi|405952231|gb|EKC20068.1| TATA-box-binding protein [Crassostrea gigas]
Length = 452
Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 5/167 (2%)
Query: 9 PMTPVDMGGS-----VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
P TP GG+ PQLQNIV TVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 81 PATPASEGGAGMVPLRPQLQNIVCTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 140
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSE+ ++LAARKYARI+QKLGF AKFLDFKIQNMVGSCDVKF
Sbjct: 141 PRTTALIFSSGKMVCTGAKSEDQAKLAARKYARIVQKLGFAAKFLDFKIQNMVGSCDVKF 200
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 201 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 247
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 188 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 247
Query: 80 GAKSEE 85
GAK E
Sbjct: 248 GAKDWE 253
>gi|38492542|pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 301 bits (770), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 62 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 96 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Query: 80 GAK 82
GAK
Sbjct: 156 GAK 158
>gi|194388082|dbj|BAG65425.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 300 bits (769), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 146/157 (92%), Positives = 150/157 (95%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSS
Sbjct: 136 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 195
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT
Sbjct: 196 GKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 255
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 256 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 233 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 292
Query: 80 GAK 82
GAK
Sbjct: 293 GAK 295
>gi|335280289|ref|XP_001924325.3| PREDICTED: TATA box-binding protein-like protein 2-like [Sus
scrofa]
Length = 379
Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/167 (87%), Positives = 156/167 (93%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PM PV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKR AAVIMRIRE
Sbjct: 188 TPMTPMIPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRLAAVIMRIRE 247
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLA+RKYAR++QKLGFPA+FL+FKIQNMVGSCDV+F
Sbjct: 248 PRTTALIFSSGKMVCTGAKSEEQSRLASRKYARVVQKLGFPARFLNFKIQNMVGSCDVRF 307
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH +FSSYEPELFPGLIYRMVKP+IVLLIFVSGKVVLT
Sbjct: 308 PIRLEGLVLTHPEFSSYEPELFPGLIYRMVKPQIVLLIFVSGKVVLT 354
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 295 KIQNMVGSCDVRFPIRLEGLVLTHPEFSSYEPELFPGLIYRMVKPQIVLLIFVSGKVVLT 354
Query: 80 GAKSEED 86
GAK +
Sbjct: 355 GAKERSE 361
>gi|1827869|pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 6 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 65
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 66 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 125
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 126 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 100 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Query: 80 GAK 82
GAK
Sbjct: 160 GAK 162
>gi|6980708|pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980712|pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980714|pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 3 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 62
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 63 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 122
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 123 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 156
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 97 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 156
Query: 80 GAK 82
GAK
Sbjct: 157 GAK 159
>gi|391336328|ref|XP_003742533.1| PREDICTED: TATA-box-binding protein-like [Metaseiulus occidentalis]
Length = 295
Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 149/170 (87%), Positives = 158/170 (92%), Gaps = 2/170 (1%)
Query: 2 SPSTPGPPMTPVDMGGSV-PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+P+TP P TP + ++ PQLQNIVSTVNLGC+LDLKKIAL ARNAEYNPKRFAAVIMR
Sbjct: 102 APATPAP-QTPASVDPNIIPQLQNIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMR 160
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREPRTTALIFSSGKMVCTGAKSE+ SRLAARKYARI+QKLGF AKFLDFKIQNMVGSCD
Sbjct: 161 IREPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARIVQKLGFEAKFLDFKIQNMVGSCD 220
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V+FPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 221 VRFPIRLEGLVLTHCQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 270
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 211 KIQNMVGSCDVRFPIRLEGLVLTHCQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 270
Query: 80 GAK 82
GAK
Sbjct: 271 GAK 273
>gi|196007384|ref|XP_002113558.1| TATA-binding protein [Trichoplax adhaerens]
gi|190583962|gb|EDV24032.1| TATA-binding protein [Trichoplax adhaerens]
Length = 203
Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/165 (87%), Positives = 154/165 (93%), Gaps = 1/165 (0%)
Query: 6 PGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
PG P T + +PQLQNIVSTVNLGC+L+L++IALHARNAEYNPKRFAAVIMRIREPR
Sbjct: 15 PGTPAT-AEAASILPQLQNIVSTVNLGCRLELQRIALHARNAEYNPKRFAAVIMRIREPR 73
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIFSSGKMVCTGAKSEE SRLAARKYAR+IQKLGFPAKF +F+IQNMVGSCDVKFPI
Sbjct: 74 TTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAKFTEFRIQNMVGSCDVKFPI 133
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
RLEGLVL HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 134 RLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 178
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 119 RIQNMVGSCDVKFPIRLEGLVLAHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 178
Query: 80 GAKSEED 86
GAK ++
Sbjct: 179 GAKVRDE 185
>gi|443688559|gb|ELT91221.1| hypothetical protein CAPTEDRAFT_209597 [Capitella teleta]
Length = 209
Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 148/177 (83%), Positives = 158/177 (89%), Gaps = 7/177 (3%)
Query: 1 MSPSTPGPPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR 53
M S PG P+TP+ + G VPQLQNIV TVN+ CKL+LK+IALHARNAEYNPKR
Sbjct: 8 MYGSIPGGPLTPMNPATPASESSGIVPQLQNIVCTVNMACKLELKRIALHARNAEYNPKR 67
Query: 54 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQ 113
FAAVIMRIREPRTTALIFSSGKMVCTGAKSE+ ++LAARKYARI+QKLGF AKFLDFKIQ
Sbjct: 68 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEDQAKLAARKYARIVQKLGFEAKFLDFKIQ 127
Query: 114 NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
NMVGSCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 128 NMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 184
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 125 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 184
Query: 80 GAK 82
GAK
Sbjct: 185 GAK 187
>gi|62528966|gb|AAX84779.1| TATA-binding protein [Hydractinia echinata]
Length = 227
Score = 298 bits (762), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/176 (85%), Positives = 156/176 (88%), Gaps = 7/176 (3%)
Query: 2 SPSTP-GPPMTPV------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRF 54
+P TP PMTP+ G VPQLQNIVSTVNL CKLDLKKIA HARNAEYNPKRF
Sbjct: 27 NPMTPMTAPMTPIATPMSAGASGIVPQLQNIVSTVNLSCKLDLKKIASHARNAEYNPKRF 86
Query: 55 AAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQN 114
AAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR+IQKLGFPAKF+DFKIQN
Sbjct: 87 AAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVIQKLGFPAKFVDFKIQN 146
Query: 115 MVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+VGSCDVKFPIRLEGLVL H QF SYEPELFPGLIYRMVKP+IVLLIFVSGKVVLT
Sbjct: 147 IVGSCDVKFPIRLEGLVLAHSQFCSYEPELFPGLIYRMVKPKIVLLIFVSGKVVLT 202
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ + L H++ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 143 KIQNIVGSCDVKFPIRLEGLVLAHSQFCSYEPELFPGLIYRMVKPKIVLLIFVSGKVVLT 202
Query: 80 GAKSEED 86
GAK +
Sbjct: 203 GAKVRSE 209
>gi|123909816|sp|Q1JPY4.1|TBPL2_DANRE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|94574475|gb|AAI16554.1| TATA box binding protein like 2 [Danio rerio]
gi|182890344|gb|AAI64097.1| Tbpl2 protein [Danio rerio]
Length = 312
Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/158 (90%), Positives = 147/158 (93%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G +PQLQNIVSTVNL C LDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 130 AESSGIIPQLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 189
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV FPIRLEGLVL
Sbjct: 190 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVL 249
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 250 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 228 KIQNMVGSCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Query: 80 GAK 82
GAK
Sbjct: 288 GAK 290
>gi|47550887|ref|NP_999961.1| TATA box-binding protein-like protein 2 [Danio rerio]
gi|32765839|gb|AAP87373.1| TATA-binding protein 2 [Danio rerio]
Length = 312
Score = 297 bits (761), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 143/158 (90%), Positives = 147/158 (93%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G +PQLQNIVSTVNL C LDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 130 AESSGIIPQLQNIVSTVNLACPLDLKSIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 189
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV FPIRLEGLVL
Sbjct: 190 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVCFPIRLEGLVL 249
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 250 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 228 KIQNMVGSCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 287
Query: 80 GAK 82
GAK
Sbjct: 288 GAK 290
>gi|198427023|ref|XP_002127120.1| PREDICTED: similar to TATA-box binding protein [Ciona intestinalis]
Length = 356
Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 145/165 (87%), Positives = 150/165 (90%)
Query: 6 PGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
P P TP + G PQLQNIVSTVNL KLDLK+IALHARNAEYNPKRFAAVIMRIREPR
Sbjct: 166 PMTPRTPAEFGVGPPQLQNIVSTVNLDTKLDLKRIALHARNAEYNPKRFAAVIMRIREPR 225
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIFSSGKMVCTGAKSE SRLAARKYAR++QKLGFPAKF+DFKIQNMVGS DVKFPI
Sbjct: 226 TTALIFSSGKMVCTGAKSENASRLAARKYARVVQKLGFPAKFIDFKIQNMVGSVDVKFPI 285
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
RLEGLVL H QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 286 RLEGLVLAHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 330
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V +V++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 271 KIQNMVGSVDVKFPIRLEGLVLAHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 330
Query: 80 GAK 82
GAK
Sbjct: 331 GAK 333
>gi|296482511|tpg|DAA24626.1| TPA: TBP protein-like [Bos taurus]
Length = 303
Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 154/173 (89%), Gaps = 4/173 (2%)
Query: 2 SPSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
SP TP PMTP ++ VPQL N+V TVNLGCKLDLK IAL ARNAEYNPKRFAAV
Sbjct: 105 SPMTPMIPMTPAMPASEIAELVPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKRFAAV 164
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTAL+FSSGKMVCTG KSEE SRLAARKYARIIQKLGFPAKFLDFKIQNMVG
Sbjct: 165 IMRIREPRTTALLFSSGKMVCTGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 224
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLE LVL+H QF+SYEPELFPGL+YRM+KPRIVLLIFVSGKVVLT
Sbjct: 225 SCDVKFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLT 277
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + A Y P+ F ++ R+ +PR LIF SGK+V T
Sbjct: 218 KIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLT 277
Query: 80 GAK 82
GAK
Sbjct: 278 GAK 280
>gi|17298080|dbj|BAB78514.1| TATA-box binding protein [Ephydatia fluviatilis]
Length = 281
Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 146/173 (84%), Positives = 154/173 (89%), Gaps = 7/173 (4%)
Query: 5 TPGPPMTPVDMGGSVP-------QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
P P TP+ G P QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV
Sbjct: 84 NPVSPRTPLSSAGVTPESIGIEPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 143
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIR+PRTTAL+FSSGKMVCTGAKSE+ SRLAARKYARIIQKLGFPA+F++FKIQNMVG
Sbjct: 144 IMRIRDPRTTALVFSSGKMVCTGAKSEDLSRLAARKYARIIQKLGFPARFMEFKIQNMVG 203
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGLV+ H QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 204 SCDVKFPIRLEGLVVQHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 256
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + + H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 197 KIQNMVGSCDVKFPIRLEGLVVQHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 256
Query: 80 GAKSEED 86
GAK +
Sbjct: 257 GAKERTE 263
>gi|338726931|ref|XP_001496050.2| PREDICTED: TATA box-binding protein-like protein 2-like [Equus
caballus]
Length = 555
Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/167 (85%), Positives = 154/167 (92%), Gaps = 1/167 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMT V + G+VPQLQN+VST NL CKLDLKKIAL ARNAEYNPKRFAAVIMRIRE
Sbjct: 364 TPMTPMTSVSECSGTVPQLQNVVSTANLACKLDLKKIALQARNAEYNPKRFAAVIMRIRE 423
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGK+VCTGA+SEE SRLAARK+AR+IQKLGFPA+FLDFKIQN+VGSCDV+F
Sbjct: 424 PRTTALIFSSGKIVCTGARSEEQSRLAARKFARVIQKLGFPARFLDFKIQNLVGSCDVRF 483
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGLVLTH QF SYEPELFPGLIYRMV PR+VLLIFVSGKVVLT
Sbjct: 484 PIRLEGLVLTHQQFCSYEPELFPGLIYRMVNPRVVLLIFVSGKVVLT 530
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 471 KIQNLVGSCDVRFPIRLEGLVLTHQQFCSYEPELFPGLIYRMVNPRVVLLIFVSGKVVLT 530
Query: 80 GAKSEED 86
GAK +
Sbjct: 531 GAKERSE 537
>gi|440902256|gb|ELR53068.1| TATA-box-binding protein, partial [Bos grunniens mutus]
Length = 247
Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/175 (82%), Positives = 154/175 (88%), Gaps = 6/175 (3%)
Query: 2 SPSTPGP--PMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFA 55
+P P P PMTP ++ VPQL N+V TVNLGCKLDLK IAL ARNAEYNPKRFA
Sbjct: 64 TPLYPSPMIPMTPAMPASEIAELVPQLHNVVCTVNLGCKLDLKSIALLARNAEYNPKRFA 123
Query: 56 AVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNM 115
AVIMRIREPRTTAL+FSSGKMVCTG KSEE SRLAARKYARIIQKLGFPAKFLDFKIQNM
Sbjct: 124 AVIMRIREPRTTALLFSSGKMVCTGGKSEEQSRLAARKYARIIQKLGFPAKFLDFKIQNM 183
Query: 116 VGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VGSCDVKFPIRLE LVL+H QF+SYEPELFPGL+YRM+KPRIVLLIFVSGKVVLT
Sbjct: 184 VGSCDVKFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLT 238
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + A Y P+ F ++ R+ +PR LIF SGK+V T
Sbjct: 179 KIQNMVGSCDVKFPIRLEPLVLSHQQFASYEPELFPGLVYRMIKPRIVLLIFVSGKVVLT 238
Query: 80 GAK 82
GAK
Sbjct: 239 GAK 241
>gi|297478910|ref|XP_002690449.1| PREDICTED: TATA-box-binding protein, partial [Bos taurus]
gi|296483816|tpg|DAA25931.1| TPA: TATA box binding protein-like [Bos taurus]
Length = 227
Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/163 (87%), Positives = 148/163 (90%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P P+ G +NIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTT
Sbjct: 58 PDAHPLPHGAVHNTTENIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTT 117
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRL
Sbjct: 118 ALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 177
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 178 EGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 220
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 161 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 220
Query: 80 GAK 82
GAK
Sbjct: 221 GAK 223
>gi|47214810|emb|CAF89637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 309
Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 142/158 (89%), Positives = 147/158 (93%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G +PQLQNIVSTVNLGC LDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 127 TERSGIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 186
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FLDFKIQNMV SCDV FPIRLEGLVL
Sbjct: 187 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVASCDVCFPIRLEGLVL 246
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 247 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 284
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 225 KIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 284
Query: 80 GAK 82
GAK
Sbjct: 285 GAK 287
>gi|340371811|ref|XP_003384438.1| PREDICTED: TATA-box-binding protein-like [Amphimedon queenslandica]
Length = 291
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 146/170 (85%), Positives = 154/170 (90%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+SP TP T MG +PQLQNIVSTV LGCKLDLK IAL ARNAEYNPKRFAAVIMR
Sbjct: 97 VSPRTPLSASTAESMG-IIPQLQNIVSTVTLGCKLDLKDIALRARNAEYNPKRFAAVIMR 155
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IR+PRTTAL+FSSGKMVCTGAKSE+ SRLAARKYARIIQKLGFPAKFL+FKIQNMVGSCD
Sbjct: 156 IRDPRTTALVFSSGKMVCTGAKSEDFSRLAARKYARIIQKLGFPAKFLEFKIQNMVGSCD 215
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLV+ H QFSSYEPELFPGLIYRMV+PRIVLLIFVSGKVVLT
Sbjct: 216 VKFPIRLEGLVVAHSQFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 265
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + + H++ + Y P+ F +I R+ PR LIF SGK+V T
Sbjct: 206 KIQNMVGSCDVKFPIRLEGLVVAHSQFSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLT 265
Query: 80 GAK 82
GAK
Sbjct: 266 GAK 268
>gi|74095979|ref|NP_001027845.1| TATA box-binding protein-like protein 2 [Takifugu rubripes]
gi|82127187|sp|Q6SJ94.1|TBPL2_FUGRU RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569213|gb|AAR24283.1| TBP-related factor 3 [Takifugu rubripes]
gi|148910851|tpg|DAA06036.1| TPA_inf: TATA box binding protein-like 2 [Takifugu rubripes]
Length = 322
Score = 291 bits (746), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/158 (89%), Positives = 147/158 (93%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G +PQLQNIVSTVNLGC LDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 140 TERSGIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 199
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+F+DFKIQNMV SCDV FPIRLEGLVL
Sbjct: 200 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFMDFKIQNMVASCDVCFPIRLEGLVL 259
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 260 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 297
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 238 KIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 297
Query: 80 GAK 82
GAK
Sbjct: 298 GAK 300
>gi|348539536|ref|XP_003457245.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/158 (89%), Positives = 147/158 (93%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
+ G +PQLQNIVSTVNLGC LDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFS
Sbjct: 137 TERSGIIPQLQNIVSTVNLGCPLDLKFIALQARNAEYNPKRFAAVIMRIREPRTTALIFS 196
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE SRLAARKYAR++QKLGFPA+FL+FKIQNMV SCDV FPIRLEGLVL
Sbjct: 197 SGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLEFKIQNMVASCDVCFPIRLEGLVL 256
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
TH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 257 THQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 235 KIQNMVASCDVCFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 294
Query: 80 GAK 82
GAK
Sbjct: 295 GAK 297
>gi|339251280|ref|XP_003373123.1| TATA-box-binding protein [Trichinella spiralis]
gi|316968993|gb|EFV53163.1| TATA-box-binding protein [Trichinella spiralis]
Length = 260
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/163 (85%), Positives = 149/163 (91%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PP VD VPQLQNIVSTVNLGCKLDLK+IAL ARNAEYNPKRFAAVIMRIREPRTT
Sbjct: 73 PPTPSVDTSMPVPQLQNIVSTVNLGCKLDLKQIALQARNAEYNPKRFAAVIMRIREPRTT 132
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGKMVCTGAKSE+ SRLAARKYARI+QKLGF AKF+DFK+QNMVGSCDV+FPI+L
Sbjct: 133 ALIFSSGKMVCTGAKSEDLSRLAARKYARIVQKLGFDAKFMDFKVQNMVGSCDVRFPIQL 192
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E LTH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 193 ESFCLTHSQFSAYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 235
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 176 KVQNMVGSCDVRFPIQLESFCLTHSQFSAYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 235
Query: 80 GAKSEED 86
GAK + D
Sbjct: 236 GAKEKRD 242
>gi|335309027|ref|XP_003361466.1| PREDICTED: TATA-box-binding protein [Sus scrofa]
Length = 326
Score = 289 bits (739), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/147 (95%), Positives = 143/147 (97%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
NIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS
Sbjct: 154 NIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 213
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 143
EE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPE
Sbjct: 214 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 273
Query: 144 LFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 274 LFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 241 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 300
Query: 80 GAKSEED 86
GAK +
Sbjct: 301 GAKVRAE 307
>gi|14423952|sp|Q9NHP5.1|TBP_DROVI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|8050582|gb|AAF71711.1|AF220262_1 TATA box-binding protein [Drosophila virilis]
Length = 349
Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/171 (85%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M PSTP P TP G VPQLQNIVSTVNL CKLDLKKIALHARNAEYNPKRFA VIM
Sbjct: 153 MGPSTPMTPATPGSADPGIVPQLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIM 212
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAK E+DSRLAARKYARIIQKLGF AKFLD KIQNMVG C
Sbjct: 213 RIREPRTTALIFSSGKMVCTGAKGEDDSRLAARKYARIIQKLGFRAKFLDLKIQNMVGLC 272
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEGLVLTH FS YEPELFPGLIYRMV+PRIVLL+ GKVVLT
Sbjct: 273 DVKFPIRLEGLVLTHCNFSRYEPELFPGLIYRMVRPRIVLLLPAPGKVVLT 323
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V ++ + L+ + L H + Y P+ F +I R+ PR L+ + GK+V T
Sbjct: 264 KIQNMVGLCDVKFPIRLEGLVLTHCNFSRYEPELFPGLIYRMVRPRIVLLLPAPGKVVLT 323
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK ++ A K I++K
Sbjct: 324 GAKVRQEIYDAFDKIFSILKKF 345
>gi|449278063|gb|EMC86030.1| TATA-box-binding protein [Columba livia]
Length = 301
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 144/171 (84%), Positives = 149/171 (87%), Gaps = 3/171 (1%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 107 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 166
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSC
Sbjct: 167 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSC 226
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPIRLEG YEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 227 DVKFPIRLEGXXXXKKML--YEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 275
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V + ++ + L+ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 218 KIQNMVGSCDVKFPIRLEG-XXXXKKMLYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG 276
Query: 81 AK 82
AK
Sbjct: 277 AK 278
>gi|312069027|ref|XP_003137490.1| TATA-box binding protein [Loa loa]
gi|307767348|gb|EFO26582.1| TATA-box binding protein [Loa loa]
Length = 369
Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 140/167 (83%), Positives = 150/167 (89%), Gaps = 6/167 (3%)
Query: 8 PPMTP----VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
PP TP +D+ P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 181 PPQTPGSQLIDI--PSPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIRE 238
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +FK+QNMVGSCDV+F
Sbjct: 239 PRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRF 298
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI+LEGL LTH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 299 PIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 345
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 286 KVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 345
Query: 80 GAKSEED 86
GAK ++D
Sbjct: 346 GAKYKKD 352
>gi|170591981|ref|XP_001900748.1| TATA-box binding protein [Brugia malayi]
gi|158591900|gb|EDP30503.1| TATA-box binding protein, putative [Brugia malayi]
Length = 347
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/167 (83%), Positives = 150/167 (89%), Gaps = 6/167 (3%)
Query: 8 PPMTP----VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
PP TP +D+ P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIRE
Sbjct: 159 PPQTPGSQLIDI--PSPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIRE 216
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +FK+QNMVGSCDV+F
Sbjct: 217 PRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRF 276
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PI+LEGL LTH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 277 PIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 323
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 264 KVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 323
Query: 80 GAKSEED 86
GAK ++D
Sbjct: 324 GAKYKKD 330
>gi|366987133|ref|XP_003673333.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
gi|342299196|emb|CCC66945.1| hypothetical protein NCAS_0A03870 [Naumovozyma castellii CBS 4309]
Length = 252
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 74 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 133
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 134 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 193
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 194 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 227
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 168 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 227
Query: 80 GAKSEED 86
GAK E+
Sbjct: 228 GAKQREE 234
>gi|135634|sp|P26354.1|TBP_ACACA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|5593|emb|CAA44843.1| TFIID [Acanthamoeba castellanii]
gi|155636|gb|AAA27712.1| transcription factor [Acanthamoeba castellanii]
gi|155638|gb|AAA27713.1| TFIID [Acanthamoeba castellanii]
gi|440795312|gb|ELR16441.1| TATAbox-binding protein [Acanthamoeba castellanii str. Neff]
Length = 258
Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/154 (87%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIVSTVNLGCKLDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 80 GIVPTLQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 139
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYARIIQKLGF AKFLDFKIQN+VGSCDV+FPIRLEGL H
Sbjct: 140 VCTGAKSEEASRLAARKYARIIQKLGFAAKFLDFKIQNIVGSCDVRFPIRLEGLAFAHNH 199
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ SYEPELFPGLIYRMV+P+IVLLIFVSGK+VLT
Sbjct: 200 YCSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLT 233
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 174 KIQNIVGSCDVRFPIRLEGLAFAHNHYCSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLT 233
Query: 80 GAKSEED 86
GAK E+
Sbjct: 234 GAKVREE 240
>gi|384501418|gb|EIE91909.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 239
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/176 (78%), Positives = 150/176 (85%), Gaps = 8/176 (4%)
Query: 3 PSTPGP--------PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRF 54
PSTP P P + G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRF
Sbjct: 39 PSTPAPVDAPTPSSNANPYAVAGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRF 98
Query: 55 AAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQN 114
AAVIMRIREP+TTALIF+SGKMV TGAKSE+DS+LAARKYARIIQKLGF AKF DFKIQN
Sbjct: 99 AAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLAARKYARIIQKLGFQAKFTDFKIQN 158
Query: 115 MVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+VGSCD+KFPIRLEGL +HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 159 IVGSCDIKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 155 KIQNIVGSCDIKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Query: 80 GAKSEED 86
GAK E+
Sbjct: 215 GAKVREE 221
>gi|156846828|ref|XP_001646300.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
gi|156116975|gb|EDO18442.1| hypothetical protein Kpol_1032p36 [Vanderwaltozyma polyspora DSM
70294]
Length = 251
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 145/155 (93%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 72 SGIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 131
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 132 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 191
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 192 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 226
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 167 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 226
Query: 80 GAKSEED 86
GAK E+
Sbjct: 227 GAKQREE 233
>gi|444316966|ref|XP_004179140.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
gi|387512180|emb|CCH59621.1| hypothetical protein TBLA_0B08050 [Tetrapisispora blattae CBS 6284]
Length = 242
Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 64 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 123
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 124 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 183
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 184 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 158 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 217
Query: 80 GAKSEED 86
GAK E+
Sbjct: 218 GAKQREE 224
>gi|324518621|gb|ADY47156.1| TATA-box-binding protein, partial [Ascaris suum]
Length = 384
Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 135/151 (89%), Positives = 143/151 (94%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT
Sbjct: 210 PALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 269
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKSEE SRLAARKYARI+QKLGF AKF +FK+QNMVGSCDV+FPI+LEGL LTH QFS+
Sbjct: 270 GAKSEEASRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFST 329
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 330 YEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 360
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 301 KVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 360
Query: 80 GAKSEED 86
GAK ++D
Sbjct: 361 GAKFKKD 367
>gi|260941770|ref|XP_002615051.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
gi|238851474|gb|EEQ40938.1| TATA-box binding protein [Clavispora lusitaniae ATCC 42720]
Length = 237
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 145/156 (92%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 57 MSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 116
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 117 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSH 176
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 177 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 212
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 153 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 212
Query: 80 GAKSEED 86
GAK E+
Sbjct: 213 GAKQREE 219
>gi|410076168|ref|XP_003955666.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
gi|372462249|emb|CCF56531.1| hypothetical protein KAFR_0B02330 [Kazachstania africana CBS 2517]
Length = 230
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 145/155 (93%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 51 SGIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 110
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 111 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 170
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 171 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 146 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 205
Query: 80 GAKSEED 86
GAK E+
Sbjct: 206 GAKQREE 212
>gi|365987133|ref|XP_003670398.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
gi|343769168|emb|CCD25155.1| hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Length = 264
Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 86 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 145
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 146 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 205
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 206 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 239
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 180 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 239
Query: 80 GAKSEED 86
GAK E+
Sbjct: 240 GAKQREE 246
>gi|254566373|ref|XP_002490297.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|238030093|emb|CAY68016.1| TATA-binding protein, general transcription factor [Komagataella
pastoris GS115]
gi|328350692|emb|CCA37092.1| TATA-box-binding protein [Komagataella pastoris CBS 7435]
Length = 243
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 64 SGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 123
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 124 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 183
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 184 HFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 218
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 159 KIQNIVGSCDVKFPIRLEGLAFSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 218
Query: 80 GAKSEED 86
GAK E+
Sbjct: 219 GAKKREE 225
>gi|254586113|ref|XP_002498624.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
gi|238941518|emb|CAR29691.1| ZYRO0G14806p [Zygosaccharomyces rouxii]
Length = 239
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 61 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 155 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Query: 80 GAKSEED 86
GAK E+
Sbjct: 215 GAKQREE 221
>gi|50290217|ref|XP_447540.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526850|emb|CAG60477.1| unnamed protein product [Candida glabrata]
Length = 233
Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 145/155 (93%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 54 SGIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 113
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 114 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 173
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 174 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 149 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Query: 80 GAKSEED 86
GAK E+
Sbjct: 209 GAKQREE 215
>gi|148676212|gb|EDL08159.1| TBP-related factor 3 [Mus musculus]
Length = 208
Score = 281 bits (720), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 148/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 21 PMNPVPGFSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 80
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGK+VCTGAKSEE+SRLAARKYAR++QKLGFP +F +FKIQNMVGSCDVKFPIRL
Sbjct: 81 ALIFSSGKVVCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRL 140
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QFSSYEPELFPGLIY+MVKP++VLLIF SGKVVLT
Sbjct: 141 EILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 183
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +AL H + + Y P+ F +I ++ +P+ LIF+SGK+V T
Sbjct: 124 KIQNMVGSCDVKFPIRLEILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 183
Query: 80 GAKSEED 86
GAK +
Sbjct: 184 GAKERSE 190
>gi|409046465|gb|EKM55945.1| hypothetical protein PHACADRAFT_256913 [Phanerochaete carnosa
HHB-10118-sp]
Length = 321
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 139/181 (76%), Positives = 155/181 (85%), Gaps = 13/181 (7%)
Query: 3 PSTPGP---PMTPVDMG----------GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEY 49
PSTP P P TPV + G VP LQNIV+TVNL C+LDLK IALHARNAEY
Sbjct: 116 PSTPAPTTIPSTPVPLTLEQQHITAVEGIVPTLQNIVATVNLDCRLDLKTIALHARNAEY 175
Query: 50 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLD 109
NPKRFAAVIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +
Sbjct: 176 NPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSE 235
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
FKIQN+VGSCDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VL
Sbjct: 236 FKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVL 295
Query: 170 T 170
T
Sbjct: 296 T 296
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 237 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 296
Query: 80 GAKSEED 86
GAK E+
Sbjct: 297 GAKVREE 303
>gi|367010504|ref|XP_003679753.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
gi|359747411|emb|CCE90542.1| hypothetical protein TDEL_0B04130 [Torulaspora delbrueckii]
Length = 235
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 57 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 116
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 117 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 176
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLL+FVSGKVVLT
Sbjct: 177 FSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLT 210
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ L+F SGK+V T
Sbjct: 151 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLT 210
Query: 80 GAKSEED 86
GAK E+
Sbjct: 211 GAKQREE 217
>gi|403418333|emb|CCM05033.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/181 (76%), Positives = 154/181 (85%), Gaps = 13/181 (7%)
Query: 3 PSTPGP---PMTPVDMG----------GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEY 49
PSTP P P TP + G VP LQNIV+TVNL C+LDLK IALHARNAEY
Sbjct: 112 PSTPAPTAVPATPAPLTLEQQHITAVEGIVPTLQNIVATVNLDCRLDLKTIALHARNAEY 171
Query: 50 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLD 109
NPKRFAAVIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +
Sbjct: 172 NPKRFAAVIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSE 231
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
FKIQN+VGSCDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VL
Sbjct: 232 FKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVL 291
Query: 170 T 170
T
Sbjct: 292 T 292
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 233 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 292
Query: 80 GAKSEED 86
GAK E+
Sbjct: 293 GAKVREE 299
>gi|17555358|ref|NP_498635.1| Protein TBP-1 [Caenorhabditis elegans]
gi|417896|sp|P32085.1|TBP_CAEEL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|12275988|gb|AAG50207.1|AF303249_1 transcription factor TFIID [Caenorhabditis elegans]
gi|156448|gb|AAA03582.1| TATA-box binding protein [Caenorhabditis elegans]
gi|351061293|emb|CCD69071.1| Protein TBP-1 [Caenorhabditis elegans]
Length = 340
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 150/165 (90%), Gaps = 2/165 (1%)
Query: 6 PGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
P P + +D+ +P LQNIVSTVNLG +LDLKKIALHARNAEYNPKRFAAVIMRIREPR
Sbjct: 154 PATPASQLDI--PMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPR 211
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +F +QNMVGSCDV+FPI
Sbjct: 212 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPI 271
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+LEGL +TH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 272 QLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 316
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++ + L+ + + H++ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 258 VQNMVGSCDVRFPIQLEGLCITHSQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 317
Query: 81 AKSEED 86
AK++ D
Sbjct: 318 AKTKRD 323
>gi|172899|gb|AAA35146.1| tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 147/167 (88%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
+TP G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIRE
Sbjct: 49 ATPESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIRE 108
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKF
Sbjct: 109 PKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKF 168
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGL +HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 169 PIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|341900545|gb|EGT56480.1| CBN-TBP-1 protein [Caenorhabditis brenneri]
Length = 337
Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 148/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPVD-MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P TP M +P LQNIVSTVNLG +LDLKKIALHARNAEYNPKRFAAVIMRIREPRTT
Sbjct: 151 PATPASHMEIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 210
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +F +QNMVGSCDV+FPI+L
Sbjct: 211 ALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQL 270
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +TH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 271 EGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 313
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++ + L+ + + HA+ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 255 VQNMVGSCDVRFPIQLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 314
Query: 81 AKSEED 86
AK+++D
Sbjct: 315 AKTKKD 320
>gi|357155673|ref|XP_003577198.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 202
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 13 PVDLSQHPSGIVPMLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 72
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 73 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 132
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 133 EGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 175
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+R+P+ LIF SGK+V T
Sbjct: 116 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 175
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 176 GAKVREETYTA 186
>gi|72679753|gb|AAI00306.1| TATA box binding protein like 2 [Mus musculus]
gi|148910845|tpg|DAA06033.1| TPA_inf: TATA box binding protein-like 2 [Mus musculus]
gi|219520477|gb|AAI44905.1| Tbpl2 protein [Mus musculus]
Length = 349
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 148/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 162 PMNPVPGFSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 221
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGK+VCTGAKSEE+SRLAARKYAR++QKLGFP +F +FKIQNMVGSCDVKFPIRL
Sbjct: 222 ALIFSSGKVVCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRL 281
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QFSSYEPELFPGLIY+MVKP++VLLIF SGKVVLT
Sbjct: 282 EILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 324
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +AL H + + Y P+ F +I ++ +P+ LIF+SGK+V T
Sbjct: 265 KIQNMVGSCDVKFPIRLEILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 324
Query: 80 GAKSEED 86
GAK +
Sbjct: 325 GAKERSE 331
>gi|294659650|ref|XP_002770623.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
gi|199434124|emb|CAR65957.1| DEHA2G11836p [Debaryomyces hansenii CBS767]
Length = 243
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 64 SGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 123
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 124 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 183
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 184 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 218
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 159 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 218
Query: 80 GAKSEED 86
GAK E+
Sbjct: 219 GAKQREE 225
>gi|448112531|ref|XP_004202120.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|448115084|ref|XP_004202744.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359383612|emb|CCE79528.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
gi|359465109|emb|CCE88814.1| Piso0_001599 [Millerozyma farinosa CBS 7064]
Length = 241
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 62 SGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 121
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 122 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 181
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 182 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 216
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 157 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 216
Query: 80 GAKSEED 86
GAK E+
Sbjct: 217 GAKQREE 223
>gi|366997981|ref|XP_003683727.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
gi|357522022|emb|CCE61293.1| hypothetical protein TPHA_0A02110 [Tetrapisispora phaffii CBS 4417]
Length = 244
Score = 281 bits (719), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 145/155 (93%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNLGC+LDLK +ALHARNAE+NPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 65 SGIVPTLQNIVATVNLGCRLDLKTVALHARNAEFNPKRFAAVIMRIREPKTTALIFASGK 124
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 125 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 184
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLL+FVSGK+VLT
Sbjct: 185 TFSSYEPELFPGLIYRMVKPKIVLLVFVSGKIVLT 219
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ L+F SGK+V T
Sbjct: 160 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLVFVSGKIVLT 219
Query: 80 GAKSEED 86
GAK E+
Sbjct: 220 GAKQREE 226
>gi|390598615|gb|EIN08013.1| TATA-box binding protein, partial [Punctularia strigosozonata
HHB-11173 SS5]
Length = 189
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 146/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 11 GIVPQLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLAARKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 71 VVTGAKSEDDSRLAARKYARIIQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 131 FSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 164
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFS 72
D S ++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF
Sbjct: 98 DAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFV 157
Query: 73 SGKMVCTGAKSEED 86
SGK+V TGAK E+
Sbjct: 158 SGKIVLTGAKVREE 171
>gi|302758308|ref|XP_002962577.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
gi|302824582|ref|XP_002993933.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300138205|gb|EFJ04980.1| hypothetical protein SELMODRAFT_163230 [Selaginella moellendorffii]
gi|300169438|gb|EFJ36040.1| hypothetical protein SELMODRAFT_270329 [Selaginella moellendorffii]
Length = 199
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVN+ CKLDLK IALHARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 10 PVDLAKHPSGIIPTLQNIVSTVNMDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTT 69
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPA+F DFKIQN+VGSCDVKFPIRL
Sbjct: 70 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRL 129
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 130 EGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 172
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 113 KIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 172
Query: 80 GAKSEED 86
GAK ++
Sbjct: 173 GAKVRDE 179
>gi|414872052|tpg|DAA50609.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 215
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|320582327|gb|EFW96544.1| TATA-binding protein, general transcription factor [Ogataea
parapolymorpha DL-1]
Length = 246
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 143/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+L+LK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 67 SGIVPTLQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 126
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL HG
Sbjct: 127 MVVTGAKSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHG 186
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 187 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 221
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 162 KIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 221
Query: 80 GAKSEED 86
GAK E+
Sbjct: 222 GAKQREE 228
>gi|403216725|emb|CCK71221.1| hypothetical protein KNAG_0G01630 [Kazachstania naganishii CBS
8797]
Length = 255
Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNLGC+LDLK +ALHARNAEYNP+RFAAVIMRIREP+TTALIF+SGKM
Sbjct: 77 GIVPTLQNIVATVNLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGKM 136
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 196
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 197 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 230
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKQREE 237
>gi|974216|emb|CAA62224.1| TATA-box binding protein [Zea mays]
Length = 215
Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|149248310|ref|XP_001528542.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
gi|146448496|gb|EDK42884.1| TATA-box binding protein [Lodderomyces elongisporus NRRL YB-4239]
Length = 248
Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 70 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 129
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 130 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 189
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 190 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 223
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 164 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 223
Query: 80 GAKSEED 86
GAK E+
Sbjct: 224 GAKQREE 230
>gi|4102725|gb|AAD10238.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|392596142|gb|EIW85465.1| TBP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 295
Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/174 (79%), Positives = 154/174 (88%), Gaps = 8/174 (4%)
Query: 3 PSTPGP------PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
PSTP P +T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAA
Sbjct: 99 PSTPAPLTLEQQHITAVD--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAA 156
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+V
Sbjct: 157 VIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIV 216
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GSCDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 217 GSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 270
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 211 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 270
Query: 80 GAKSEED 86
GAK E+
Sbjct: 271 GAKVREE 277
>gi|357119735|ref|XP_003561589.1| PREDICTED: TATA-box-binding protein 2-like [Brachypodium
distachyon]
Length = 200
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|162459891|ref|NP_001105318.1| TATA-box-binding protein 1 [Zea mays]
gi|1729907|sp|P50158.1|TBP1_MAIZE RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|293904|gb|AAA65941.1| TATA-binding protein [Zea mays]
gi|414872053|tpg|DAA50610.1| TPA: TATA-box-binding protein 1(TATA-binding factor 1)(TATA
sequence-binding protein 1) [Zea mays]
Length = 200
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|45201230|ref|NP_986800.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|44986084|gb|AAS54624.1| AGR134Wp [Ashbya gossypii ATCC 10895]
gi|374110049|gb|AEY98954.1| FAGR134Wp [Ashbya gossypii FDAG1]
Length = 239
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 61 GIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 155 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Query: 80 GAKSEED 86
GAK E+
Sbjct: 215 GAKQREE 221
>gi|348168341|gb|AEP68421.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168347|gb|AEP68424.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|449452638|ref|XP_004144066.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
gi|449493574|ref|XP_004159356.1| PREDICTED: TATA-box-binding protein-like [Cucumis sativus]
Length = 200
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLKKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|169854094|ref|XP_001833724.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
gi|116505191|gb|EAU88086.1| transcription initiation factor TFIID-1 [Coprinopsis cinerea
okayama7#130]
Length = 308
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 130 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 189
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 190 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 249
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 250 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 283
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 224 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 283
Query: 80 GAKSEED 86
GAK E+
Sbjct: 284 GAKVREE 290
>gi|308467285|ref|XP_003095891.1| CRE-TBP-1 protein [Caenorhabditis remanei]
gi|308244262|gb|EFO88214.1| CRE-TBP-1 protein [Caenorhabditis remanei]
Length = 338
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 149/165 (90%), Gaps = 2/165 (1%)
Query: 6 PGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
P P + +D+ +P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIREPR
Sbjct: 152 PATPASQLDI--PMPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPR 209
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +F +QNMVGSCDV+FPI
Sbjct: 210 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPI 269
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+LEGL +TH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 270 QLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 314
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++ + L+ + + HA+ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 256 VQNMVGSCDVRFPIQLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 315
Query: 81 AKSEED 86
AK+++D
Sbjct: 316 AKTKKD 321
>gi|385301759|gb|EIF45927.1| tata-box binding protein [Dekkera bruxellensis AWRI1499]
Length = 259
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/155 (85%), Positives = 143/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+L+LK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 80 SGIVPTLQNIVATVNLDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 139
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL HG
Sbjct: 140 MVVTGAKSEDDSKLAARKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYAHG 199
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 200 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 175 KIQNIVGSCDVKFPIRLEGLAYAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Query: 80 GAKSEED 86
GAK E+
Sbjct: 235 GAKQREE 241
>gi|150247085|ref|NP_001092831.1| TATA box-binding protein-like protein 2 [Rattus norvegicus]
gi|166987367|sp|A6H909.1|TBPL2_RAT RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|148910847|tpg|DAA06034.1| TPA_inf: TATA box binding protein-like 2 [Rattus norvegicus]
Length = 344
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 148/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV + G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 157 PMNPVTECSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 216
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGK+VCTGAKSE++SRLAARKYAR++QKLGFP +F +FKIQNMV SCDVKFPIRL
Sbjct: 217 ALIFSSGKVVCTGAKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRL 276
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QFSSYEPELFPGLIY+MVKP++VLLIF SGKVVLT
Sbjct: 277 EILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 319
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ +AL H + + Y P+ F +I ++ +P+ LIF+SGK+V T
Sbjct: 260 KIQNMVASCDVKFPIRLEILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 319
Query: 80 GAK 82
GAK
Sbjct: 320 GAK 322
>gi|255568956|ref|XP_002525448.1| TATA-box binding protein, putative [Ricinus communis]
gi|223535261|gb|EEF36938.1| TATA-box binding protein, putative [Ricinus communis]
Length = 201
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 148/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK+IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 12 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKQIALQARNAEYNPKRFAAVIMRIREPKTT 71
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 72 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 131
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+T
Sbjct: 132 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 115 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 175 GAKVRDETYTA 185
>gi|395843435|ref|XP_003794490.1| PREDICTED: TATA box-binding protein-like protein 2 [Otolemur
garnettii]
Length = 364
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/166 (81%), Positives = 150/166 (90%), Gaps = 1/166 (0%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTPV + G VP+LQNIV T+NL CKLDL++IAL A+N EYNP+RF+AVIMRIRE
Sbjct: 173 TPMTPMTPVSECCGIVPELQNIVCTINLACKLDLREIALRAKNTEYNPQRFSAVIMRIRE 232
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIFSSGK+VCTGAKSEE SRLAARK+AR++QKLGFPA+FLDFKI NMVGSCDV F
Sbjct: 233 PRTTALIFSSGKIVCTGAKSEEQSRLAARKFARVVQKLGFPARFLDFKIHNMVGSCDVGF 292
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PIRLEGLVL H QF SYEPELFPGLIYRMVKPR+V+LIFVSGKVVL
Sbjct: 293 PIRLEGLVLAHQQFCSYEPELFPGLIYRMVKPRVVVLIFVSGKVVL 338
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ N+V + ++G + L+ + L H + Y P+ F +I R+ +PR LIF SGK+V
Sbjct: 280 KIHNMVGSCDVGFPIRLEGLVLAHQQFCSYEPELFPGLIYRMVKPRVVVLIFVSGKVVLA 339
Query: 80 GAKSEED 86
GAK +
Sbjct: 340 GAKKRSE 346
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 190 ELQNIVCTINLACKLDLREIAL-RAKNTEYNPQRFSAVIMRIREPRTTALIFSSGKIVCT 248
>gi|398364911|ref|NP_011075.3| Spt15p [Saccharomyces cerevisiae S288c]
gi|135643|sp|P13393.3|TBP_YEAST RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription factor D; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|73535263|pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|4610|emb|CAA34751.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171132|gb|AAA34458.1| TATA box factor [Saccharomyces cerevisiae]
gi|172901|gb|AAA35147.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|603388|gb|AAB64675.1| Spt15p: TATA-box binding protein tfIId [Saccharomyces cerevisiae]
gi|151944866|gb|EDN63125.1| TBP [Saccharomyces cerevisiae YJM789]
gi|190405707|gb|EDV08974.1| TATA-box binding protein [Saccharomyces cerevisiae RM11-1a]
gi|256272072|gb|EEU07084.1| Spt15p [Saccharomyces cerevisiae JAY291]
gi|259146076|emb|CAY79336.1| Spt15p [Saccharomyces cerevisiae EC1118]
gi|285811781|tpg|DAA07809.1| TPA: Spt15p [Saccharomyces cerevisiae S288c]
gi|323309314|gb|EGA62532.1| Spt15p [Saccharomyces cerevisiae FostersO]
gi|323333807|gb|EGA75198.1| Spt15p [Saccharomyces cerevisiae AWRI796]
gi|323337848|gb|EGA79088.1| Spt15p [Saccharomyces cerevisiae Vin13]
gi|323348846|gb|EGA83084.1| Spt15p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355333|gb|EGA87158.1| Spt15p [Saccharomyces cerevisiae VL3]
gi|348168207|gb|AEP68354.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168209|gb|AEP68355.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168211|gb|AEP68356.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168213|gb|AEP68357.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168215|gb|AEP68358.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168217|gb|AEP68359.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168219|gb|AEP68360.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168221|gb|AEP68361.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168223|gb|AEP68362.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168225|gb|AEP68363.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168227|gb|AEP68364.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168229|gb|AEP68365.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168235|gb|AEP68368.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168237|gb|AEP68369.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168239|gb|AEP68370.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168241|gb|AEP68371.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168243|gb|AEP68372.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168245|gb|AEP68373.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168247|gb|AEP68374.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168249|gb|AEP68375.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168251|gb|AEP68376.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168253|gb|AEP68377.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168255|gb|AEP68378.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168257|gb|AEP68379.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168259|gb|AEP68380.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168261|gb|AEP68381.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168263|gb|AEP68382.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168265|gb|AEP68383.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168267|gb|AEP68384.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168269|gb|AEP68385.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168271|gb|AEP68386.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168273|gb|AEP68387.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168275|gb|AEP68388.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168277|gb|AEP68389.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168279|gb|AEP68390.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168281|gb|AEP68391.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168283|gb|AEP68392.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168285|gb|AEP68393.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168287|gb|AEP68394.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168289|gb|AEP68395.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168291|gb|AEP68396.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168293|gb|AEP68397.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168295|gb|AEP68398.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168297|gb|AEP68399.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168299|gb|AEP68400.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168301|gb|AEP68401.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168303|gb|AEP68402.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168305|gb|AEP68403.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168307|gb|AEP68404.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168309|gb|AEP68405.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168311|gb|AEP68406.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168313|gb|AEP68407.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168315|gb|AEP68408.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168317|gb|AEP68409.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168319|gb|AEP68410.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168321|gb|AEP68411.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168323|gb|AEP68412.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168325|gb|AEP68413.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168327|gb|AEP68414.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168329|gb|AEP68415.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168331|gb|AEP68416.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168333|gb|AEP68417.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168335|gb|AEP68418.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168337|gb|AEP68419.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168339|gb|AEP68420.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168343|gb|AEP68422.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168345|gb|AEP68423.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168349|gb|AEP68425.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168351|gb|AEP68426.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168353|gb|AEP68427.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168355|gb|AEP68428.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168357|gb|AEP68429.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168361|gb|AEP68431.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168363|gb|AEP68432.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168365|gb|AEP68433.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168367|gb|AEP68434.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168369|gb|AEP68435.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168371|gb|AEP68436.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|349577810|dbj|GAA22978.1| K7_Spt15p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765929|gb|EHN07432.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299852|gb|EIW10944.1| Spt15p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|226502|prf||1515352A transcription initiation factor TFIID
Length = 240
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|268575218|ref|XP_002642588.1| C. briggsae CBR-TBP-1 protein [Caenorhabditis briggsae]
Length = 337
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 149/165 (90%), Gaps = 2/165 (1%)
Query: 6 PGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
P P + +D+ +P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIREPR
Sbjct: 151 PATPASQLDI--PMPALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPR 208
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +F +QNMVGSCDV+FPI
Sbjct: 209 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPI 268
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+LEGL +TH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 269 QLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 313
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++ + L+ + + HA+ + Y P+ F +I R+ +PR LIF SGK+V TG
Sbjct: 255 VQNMVGSCDVRFPIQLEGLCITHAQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITG 314
Query: 81 AKSEED 86
AK+++D
Sbjct: 315 AKTKKD 320
>gi|242038657|ref|XP_002466723.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
gi|241920577|gb|EER93721.1| hypothetical protein SORBIDRAFT_01g012880 [Sorghum bicolor]
Length = 200
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|448513790|ref|XP_003867010.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
gi|380351348|emb|CCG21572.1| Tbp1 transcription initiation factor [Candida orthopsilosis Co
90-125]
Length = 251
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 73 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 132
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 133 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 192
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 193 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 226
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 167 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 226
Query: 80 GAKSEED 86
GAK E+
Sbjct: 227 GAKQREE 233
>gi|344228428|gb|EGV60314.1| TBP-domain-containing protein [Candida tenuis ATCC 10573]
Length = 237
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/154 (87%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL CKLDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 59 GIVPTLQNIVATVNLDCKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 118
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 119 VVTGAKSENDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 178
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 179 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 212
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 153 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 212
Query: 80 GAKSEED 86
GAK E+
Sbjct: 213 GAKQREE 219
>gi|149039452|gb|EDL93672.1| rCG45623 [Rattus norvegicus]
Length = 190
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 148/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV + G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 3 PMNPVTECSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 62
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGK+VCTGAKSE++SRLAARKYAR++QKLGFP +F +FKIQNMV SCDVKFPIRL
Sbjct: 63 ALIFSSGKVVCTGAKSEDESRLAARKYARVVQKLGFPVRFFNFKIQNMVASCDVKFPIRL 122
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QFSSYEPELFPGLIY+MVKP++VLLIF SGKVVLT
Sbjct: 123 EILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 165
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ +AL H + + Y P+ F +I ++ +P+ LIF+SGK+V T
Sbjct: 106 KIQNMVASCDVKFPIRLEILALTHRQFSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 165
Query: 80 GAKSEED 86
GAK +
Sbjct: 166 GAKERSE 172
>gi|50547559|ref|XP_501249.1| YALI0B23056p [Yarrowia lipolytica]
gi|49647115|emb|CAG83502.1| YALI0B23056p [Yarrowia lipolytica CLIB122]
Length = 227
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/160 (84%), Positives = 147/160 (91%), Gaps = 2/160 (1%)
Query: 13 VDMG--GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 70
VD G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALI
Sbjct: 43 VDSGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALI 102
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
F+SGKMV TGA+SE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL
Sbjct: 103 FASGKMVVTGARSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGL 162
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 163 AFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 202
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 143 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 202
Query: 80 GAKSEED 86
GAK E+
Sbjct: 203 GAKQREE 209
>gi|4102723|gb|AAD10237.1| TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/165 (83%), Positives = 148/165 (89%), Gaps = 4/165 (2%)
Query: 10 MTPVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
+ PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+
Sbjct: 9 IQPVDLQRHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPK 68
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPI 125
TTALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPI
Sbjct: 69 TTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPI 128
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
RLEGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 129 RLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|406607792|emb|CCH40897.1| TATA-box-binding protein [Wickerhamomyces ciferrii]
Length = 238
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 60 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 119
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 120 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGP 179
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 180 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 154 KIQNIVGSCDVKFPIRLEGLAFSHGPFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Query: 80 GAKSEED 86
GAK E+
Sbjct: 214 GAKQREE 220
>gi|540193|gb|AAA79367.1| TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/160 (83%), Positives = 146/160 (91%)
Query: 11 TPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 70
T + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALI
Sbjct: 45 TFAGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALI 104
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
F+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL
Sbjct: 105 FASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGL 164
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 165 AYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 204
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 145 KIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 204
Query: 80 GAKSEED 86
GAK E+
Sbjct: 205 GAKVREE 211
>gi|115454423|ref|NP_001050812.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|73919858|sp|Q8W0W4.2|TBP2_ORYSJ RecName: Full=TATA-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|31415973|gb|AAP50993.1| TATA-binding protein TBP2 [Oryza sativa Japonica Group]
gi|108710181|gb|ABF97976.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113549283|dbj|BAF12726.1| Os03g0657000 [Oryza sativa Japonica Group]
gi|215686467|dbj|BAG87728.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 14 PVDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 73
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 74 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 133
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 134 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 117 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 177 GAKVRDETYTA 187
>gi|413933539|gb|AFW68090.1| TATA-binding protein2, partial [Zea mays]
Length = 205
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|162459971|ref|NP_001105319.1| TATA-box-binding protein 2 [Zea mays]
gi|1729908|sp|P50159.1|TBP2_MAIZE RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|293906|gb|AAA65942.1| TATA-binding protein [Zea mays]
gi|195604414|gb|ACG24037.1| TATA-binding protein 2 [Zea mays]
gi|238014342|gb|ACR38206.1| unknown [Zea mays]
gi|413933540|gb|AFW68091.1| TATA-binding protein2 [Zea mays]
Length = 200
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|222625492|gb|EEE59624.1| hypothetical protein OsJ_11965 [Oryza sativa Japonica Group]
Length = 207
Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 14 PVDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 73
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 74 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 133
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 134 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 117 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 177 GAKVRDETYTA 187
>gi|348168231|gb|AEP68366.1| TATA-binding protein [Saccharomyces cerevisiae]
gi|348168233|gb|AEP68367.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|348168359|gb|AEP68430.1| TATA-binding protein [Saccharomyces cerevisiae]
Length = 240
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|50308801|ref|XP_454405.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643540|emb|CAG99492.1| KLLA0E10099p [Kluyveromyces lactis]
Length = 233
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 134/173 (77%), Positives = 148/173 (85%), Gaps = 6/173 (3%)
Query: 4 STPGPPMTPVD------MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
S PG D G +P LQNIV+TVNL C+LDLK +ALHARNAEYNPKRFAAV
Sbjct: 36 SLPGTDANAEDADKGSATSGIIPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAV 95
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VG
Sbjct: 96 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVG 155
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDVKFPIRLEGL +HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 156 SCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 149 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Query: 80 GAKSEED 86
GAK E+
Sbjct: 209 GAKQREE 215
>gi|414872051|tpg|DAA50608.1| TPA: hypothetical protein ZEAMMB73_869091, partial [Zea mays]
Length = 195
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAK 82
GAK
Sbjct: 174 GAK 176
>gi|294034|gb|AAA16924.1| TATA box-binding protein, partial [Onchocerca volvulus]
Length = 179
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/151 (89%), Positives = 143/151 (94%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVSTVNLG LDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT
Sbjct: 5 PALQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 64
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKSEE SRLAARKYARI+QKLGF AKF +FK+QNMVGSCDV+FPI+LEGL LTH QFS+
Sbjct: 65 GAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGSCDVRFPIQLEGLCLTHTQFST 124
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 125 YEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 155
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 96 KVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 155
Query: 80 GAKSEED 86
GAK ++D
Sbjct: 156 GAKYKKD 162
>gi|388512865|gb|AFK44494.1| unknown [Lotus japonicus]
Length = 200
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK IAL ARNAE+NPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLQKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEFNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSEE SRLAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEEQSRLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|58270288|ref|XP_572300.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134117708|ref|XP_772488.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255102|gb|EAL17841.1| hypothetical protein CNBL1030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228558|gb|AAW44993.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 232
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 149/163 (91%), Gaps = 2/163 (1%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P +T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNP+RFAAV+MRIR+PRTT
Sbjct: 46 PEITAVD--GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTT 103
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQNMVGSCDVKFPIRL
Sbjct: 104 ALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRL 163
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM+KP++V+LIFVSGK+VLT
Sbjct: 164 EGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 147 KIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Query: 80 GAKSEEDSRLA 90
GAK E+ +A
Sbjct: 207 GAKVREEIYMA 217
>gi|242084298|ref|XP_002442574.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
gi|241943267|gb|EES16412.1| hypothetical protein SORBIDRAFT_08g022273 [Sorghum bicolor]
Length = 200
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/163 (84%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|405124108|gb|AFR98870.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 232
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 149/163 (91%), Gaps = 2/163 (1%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P +T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNP+RFAAV+MRIR+PRTT
Sbjct: 46 PEITAVD--GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTT 103
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQNMVGSCDVKFPIRL
Sbjct: 104 ALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRL 163
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM+KP++V+LIFVSGK+VLT
Sbjct: 164 EGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 147 KIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Query: 80 GAKSEEDSRLA 90
GAK E+ +A
Sbjct: 207 GAKVREEIYMA 217
>gi|321264592|ref|XP_003197013.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Cryptococcus gattii WM276]
gi|317463491|gb|ADV25226.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit), putative [Cryptococcus gattii WM276]
Length = 232
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 149/163 (91%), Gaps = 2/163 (1%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P +T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNP+RFAAV+MRIR+PRTT
Sbjct: 46 PEITAVD--GLVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPRRFAAVVMRIRDPRTT 103
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQNMVGSCDVKFPIRL
Sbjct: 104 ALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFEAKFAEFKIQNMVGSCDVKFPIRL 163
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM+KP++V+LIFVSGK+VLT
Sbjct: 164 EGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 147 KIQNMVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVILIFVSGKIVLT 206
Query: 80 GAKSEEDSRLA 90
GAK E+ +A
Sbjct: 207 GAKVREEIYMA 217
>gi|354546879|emb|CCE43611.1| hypothetical protein CPAR2_212550 [Candida parapsilosis]
Length = 259
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 81 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 140
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 141 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 200
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 201 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 175 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Query: 80 GAKSEED 86
GAK E+
Sbjct: 235 GAKQREE 241
>gi|349602909|gb|AEP98902.1| TATA-box-binding protein-like protein, partial [Equus caballus]
Length = 169
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/143 (94%), Positives = 138/143 (96%)
Query: 28 TVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDS 87
VNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE S
Sbjct: 1 AVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQS 60
Query: 88 RLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPG 147
RLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPELFPG
Sbjct: 61 RLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPG 120
Query: 148 LIYRMVKPRIVLLIFVSGKVVLT 170
LIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 121 LIYRMIKPRIVLLIFVSGKVVLT 143
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 84 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 143
Query: 80 GAK 82
GAK
Sbjct: 144 GAK 146
>gi|356532171|ref|XP_003534647.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|213401857|ref|XP_002171701.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
gi|211999748|gb|EEB05408.1| TATA-box-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 231
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 133/156 (85%), Positives = 145/156 (92%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 51 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 110
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 111 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 170
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 171 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 206
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 147 KIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 206
Query: 80 GAKSEED 86
GAK E+
Sbjct: 207 GAKVREE 213
>gi|1351224|sp|P48511.1|TBP_MESCR RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|841440|gb|AAA80641.1| TATA-binding protein [Mesembryanthemum crystallinum]
Length = 200
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 1/163 (0%)
Query: 9 PMTPVDM-GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P+ P+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDPIKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|344305038|gb|EGW35270.1| hypothetical protein SPAPADRAFT_58486 [Spathaspora passalidarum
NRRL Y-27907]
Length = 246
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGK
Sbjct: 67 SGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGK 126
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 127 MVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 186
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 187 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 221
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 162 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 221
Query: 80 GAKSEED 86
GAK E+
Sbjct: 222 GAKQREE 228
>gi|146415198|ref|XP_001483569.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
gi|146392042|gb|EDK40200.1| TATA-box binding protein [Meyerozyma guilliermondii ATCC 6260]
Length = 240
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 62 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 121
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 122 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 181
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSG++VLT
Sbjct: 182 FSSYEPELFPGLIYRMVKPKIVLLIFVSGRIVLT 215
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SG++V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGRIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|409082748|gb|EKM83106.1| hypothetical protein AGABI1DRAFT_111611 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 306
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/174 (78%), Positives = 154/174 (88%), Gaps = 8/174 (4%)
Query: 3 PSTPGP------PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
PSTP P +T V+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAA
Sbjct: 110 PSTPVPLTLEQQHITAVE--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAA 167
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+V
Sbjct: 168 VIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIV 227
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GSCDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 228 GSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 281
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 222 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 281
Query: 80 GAKSEED 86
GAK E+
Sbjct: 282 GAKVREE 288
>gi|326490497|dbj|BAJ84912.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 200
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+V SCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 173
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV++ ++ + L+ +A H + Y P+ F +I R+R+P+ LIF SGK+V T
Sbjct: 114 KIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKVREETYTA 184
>gi|297746507|emb|CBI16563.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 11 PVDLSKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|328768487|gb|EGF78533.1| Tata-Box binding protein ytbp [Batrachochytrium dendrobatidis
JAM81]
Length = 218
Score = 279 bits (714), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 148/164 (90%), Gaps = 4/164 (2%)
Query: 11 TPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
T +D+G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+T
Sbjct: 30 TGIDLGVHPSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKT 89
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMV TGAKSE++S+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIR
Sbjct: 90 TALIFASGKMVVTGAKSEDNSKLASRKYARIIQKLGFQAKFTDFKIQNIVGSCDVKFPIR 149
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 150 LEGLAYAHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEED 86
GAK E+
Sbjct: 194 GAKVREE 200
>gi|168003287|ref|XP_001754344.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162694446|gb|EDQ80794.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 214
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVN+ C+L+LK IALHARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLAKHPSGIVPTLQNIVSTVNMDCRLELKTIALHARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPA+F DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAQFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK ++
Sbjct: 174 GAKVRDE 180
>gi|401886560|gb|EJT50588.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 2479]
gi|406698490|gb|EKD01726.1| TATA-box binding protein (Transcription initiation factor TFIID TBP
subunit) [Trichosporon asahii var. asahii CBS 8904]
Length = 231
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/168 (79%), Positives = 150/168 (89%), Gaps = 2/168 (1%)
Query: 3 PSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIR 62
P P ++PV G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAV+MRIR
Sbjct: 40 PQASVPEISPVQ--GLVPVLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIR 97
Query: 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVK 122
EP+TTALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDVK
Sbjct: 98 EPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVK 157
Query: 123 FPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPIRLEGL +HG FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 158 FPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 205
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 146 KIQNIVGSCDVKFPIRLEGLAFSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 205
Query: 80 GAKSEEDSRLAARK 93
GAK E+ +A ++
Sbjct: 206 GAKVREEIYMAFKQ 219
>gi|218184579|gb|EEC67006.1| hypothetical protein OsI_33717 [Oryza sativa Indica Group]
Length = 226
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 148/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLKKIAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 35 PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 94
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 95 ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 154
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 155 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 197
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 138 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 197
Query: 80 GAKSEED 86
GAK ++
Sbjct: 198 GAKYRKE 204
>gi|125574885|gb|EAZ16169.1| hypothetical protein OsJ_31618 [Oryza sativa Japonica Group]
Length = 224
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 148/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLKKIAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 33 PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 92
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 93 ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 152
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 153 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 136 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Query: 80 GAKSEED 86
GAK ++
Sbjct: 196 GAKYRKE 202
>gi|363753780|ref|XP_003647106.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890742|gb|AET40289.1| hypothetical protein Ecym_5549 [Eremothecium cymbalariae
DBVPG#7215]
Length = 239
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 61 GIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 VVTGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 180
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 155 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 214
Query: 80 GAKSEED 86
GAK E+
Sbjct: 215 GAKQREE 221
>gi|126274078|ref|XP_001387406.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|126213276|gb|EAZ63383.1| TATA-binding protein [Scheffersomyces stipitis CBS 6054]
Length = 247
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 69 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 128
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 129 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 188
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 189 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 222
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 163 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 222
Query: 80 GAKSEED 86
GAK E+
Sbjct: 223 GAKQREE 229
>gi|351727953|ref|NP_001238202.1| TATA-box-binding protein [Glycine max]
gi|3122946|sp|Q42808.1|TBP_SOYBN RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1220522|gb|AAA91948.1| TATA-box binding protein [Glycine max]
Length = 200
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 11 PVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|401625996|gb|EJS43965.1| spt15p [Saccharomyces arboricola H-6]
Length = 240
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNP+RFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|417882|sp|Q02879.1|TBP2_WHEAT RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|21877|emb|CAA79268.1| DNA binding protein [Triticum aestivum]
gi|170778|gb|AAA34307.1| DNA-binding protein [Triticum aestivum]
Length = 201
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 12 PVDLTKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 71
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+V SCDVKFPIRL
Sbjct: 72 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVASCDVKFPIRL 131
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 132 EGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 174
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV++ ++ + L+ +A H + Y P+ F +I R+R+P+ LIF SGK+V T
Sbjct: 115 KIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLT 174
Query: 80 GAKSEEDS 87
GAK E++
Sbjct: 175 GAKVREET 182
>gi|115482150|ref|NP_001064668.1| Os10g0432300 [Oryza sativa Japonica Group]
gi|78708692|gb|ABB47667.1| TATA-box binding protein 1, putative, expressed [Oryza sativa
Japonica Group]
gi|113639277|dbj|BAF26582.1| Os10g0432300 [Oryza sativa Japonica Group]
Length = 223
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 148/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLKKIAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 33 PVDLVEHPSGIVPTLQNIVSTVNLDCRLDLKKIALQARNAEYNPKRFAAVIMRIRDPKTT 92
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 93 ALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 152
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 153 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 136 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 195
Query: 80 GAKSEED 86
GAK ++
Sbjct: 196 GAKYRKE 202
>gi|365761010|gb|EHN02687.1| Spt15p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842615|gb|EJT44751.1| SPT15-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 240
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNP+RFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPRRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|135640|sp|P26357.1|TBP_SOLTU RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|21581|emb|CAA44360.1| TATA-binding protein [Solanum tuberosum]
Length = 200
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+T
Sbjct: 131 EGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYAHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|402225771|gb|EJU05832.1| TBP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 235
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 133/161 (82%), Positives = 149/161 (92%), Gaps = 2/161 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
+T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTAL
Sbjct: 52 ITAVD--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTAL 109
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 129
IF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF +F+DFKIQN+VGSCDVKFPIRLEG
Sbjct: 110 IFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDTRFVDFKIQNIVGSCDVKFPIRLEG 169
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 170 LAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 210
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 151 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 210
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP 104
GAK E+ A ++Q+ P
Sbjct: 211 GAKVREEIYTAFNTIYTVLQEFKKP 235
>gi|302693080|ref|XP_003036219.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
gi|300109915|gb|EFJ01317.1| hypothetical protein SCHCODRAFT_81516 [Schizophyllum commune H4-8]
Length = 286
Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/174 (77%), Positives = 154/174 (88%), Gaps = 8/174 (4%)
Query: 3 PSTPGP------PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
P+TP P +T V+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAA
Sbjct: 90 PATPAPLTLEQQHITAVE--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAA 147
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+V
Sbjct: 148 VIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIV 207
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GSCDV+FPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 208 GSCDVRFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 261
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 202 KIQNIVGSCDVRFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 261
Query: 80 GAKSEED 86
GAK E+
Sbjct: 262 GAKVREE 268
>gi|170093960|ref|XP_001878201.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646655|gb|EDR10900.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 189
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 11 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 164
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFS 72
D S ++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF
Sbjct: 98 DAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFV 157
Query: 73 SGKMVCTGAKSEED 86
SGK+V TGAK E+
Sbjct: 158 SGKIVLTGAKVREE 171
>gi|999660|pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|999661|pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
gi|1633307|pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
gi|5822424|pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
gi|29726664|pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726668|pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726672|pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|29726676|pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
gi|38492530|pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 62 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 122 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 96 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Query: 80 GAKSEED 86
GAK E+
Sbjct: 156 GAKQREE 162
>gi|384500347|gb|EIE90838.1| TATA-box-binding protein [Rhizopus delemar RA 99-880]
Length = 248
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 150/180 (83%), Gaps = 12/180 (6%)
Query: 3 PSTPGP---------PMTPVDMGGSVPQLQ---NIVSTVNLGCKLDLKKIALHARNAEYN 50
PSTP P P + G P LQ NIV+TVNL C+LDLK IALHARNAEYN
Sbjct: 44 PSTPAPNDAPTPSSRDANPYAVAGITPTLQVFRNIVATVNLDCRLDLKTIALHARNAEYN 103
Query: 51 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDF 110
PKRFAAVIMRIREP+TTALIF+SGKMV TGAKSE+DS+LAARKYARIIQKLGF AKF DF
Sbjct: 104 PKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLAARKYARIIQKLGFQAKFTDF 163
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KIQN+VGSCDVKFPIRLEGL +HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 164 KIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 223
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 164 KIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 223
Query: 80 GAKSEED 86
GAK E+
Sbjct: 224 GAKVREE 230
>gi|358060360|dbj|GAA93765.1| hypothetical protein E5Q_00411 [Mixia osmundae IAM 14324]
Length = 367
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 134/162 (82%), Positives = 149/162 (91%), Gaps = 1/162 (0%)
Query: 9 PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
P+ P ++ G VP LQNIV+TVNL CKLDLK IALHARNAEYNPKRFAAVIMRIREP+TTA
Sbjct: 182 PIIP-NVHGLVPTLQNIVATVNLECKLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTA 240
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 128
LIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF A+F +FKIQN+VGSCDVKFPIRLE
Sbjct: 241 LIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFEAQFKEFKIQNIVGSCDVKFPIRLE 300
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GL +HG FSSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 301 GLAYSHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 342
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 283 KIQNIVGSCDVKFPIRLEGLAYSHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 342
Query: 80 GAKSEED 86
GAK E+
Sbjct: 343 GAKVREE 349
>gi|494632|pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
gi|494633|pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 62 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 122 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 96 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Query: 80 GAKSEED 86
GAK E+
Sbjct: 156 GAKQREE 162
>gi|393220621|gb|EJD06107.1| TATA-box binding protein, partial [Fomitiporia mediterranea MF3/22]
Length = 189
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G +P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 11 GIIPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 164
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFS 72
D S ++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF
Sbjct: 98 DAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFV 157
Query: 73 SGKMVCTGAKSEED 86
SGK+V TGAK E+
Sbjct: 158 SGKIVLTGAKVREE 171
>gi|207345821|gb|EDZ72518.1| YER148Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 240
Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 143/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNP RFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPSRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|340939166|gb|EGS19788.1| putative tata-box binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 255
Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 149/172 (86%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 59 VTPATPAATPGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 118
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 119 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 178
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 179 CDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|392567667|gb|EIW60842.1| TBP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 308
Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/174 (78%), Positives = 154/174 (88%), Gaps = 8/174 (4%)
Query: 3 PSTPGP------PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
P+TP P +T V+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAA
Sbjct: 112 PATPAPLTLEQQHITAVE--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAA 169
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+V
Sbjct: 170 VIMRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIV 229
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GSCDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 230 GSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 283
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 224 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 283
Query: 80 GAKSEED 86
GAK E+
Sbjct: 284 GAKVREE 290
>gi|224285248|gb|ACN40350.1| unknown [Picea sitchensis]
Length = 200
Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLEKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPA F DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|255936921|ref|XP_002559487.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584107|emb|CAP92136.1| Pc13g10670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 135/170 (79%), Positives = 148/170 (87%), Gaps = 1/170 (0%)
Query: 2 SPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
SP+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMR
Sbjct: 71 SPATPAATPGATTGSSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 130
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD
Sbjct: 131 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 190
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 181 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Query: 80 GAKSEED 86
GAK E+
Sbjct: 241 GAKVREE 247
>gi|63145982|gb|AAY33926.1| TATA box binding protein [Ovis aries]
Length = 141
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 134/141 (95%), Positives = 137/141 (97%)
Query: 27 STVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEED 86
STVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE
Sbjct: 1 STVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQ 60
Query: 87 SRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFP 146
SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPELFP
Sbjct: 61 SRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFP 120
Query: 147 GLIYRMVKPRIVLLIFVSGKV 167
GLIYRM+KPRIVLLIFVSGKV
Sbjct: 121 GLIYRMIKPRIVLLIFVSGKV 141
>gi|225435804|ref|XP_002285755.1| PREDICTED: TATA-box-binding protein-like [Vitis vinifera]
Length = 200
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 11 PVDLSKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIRDPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEHQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|3122941|sp|P93348.1|TBP_TOBAC RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|1498162|dbj|BAA13156.1| TATA binding protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQSSKLAARKYARIIQKLGFDAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|425767263|gb|EKV05837.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum PHI26]
gi|425780061|gb|EKV18083.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Penicillium digitatum Pd1]
Length = 263
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 135/170 (79%), Positives = 148/170 (87%), Gaps = 1/170 (0%)
Query: 2 SPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
SP+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMR
Sbjct: 69 SPATPAATPGATTGSSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 128
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD
Sbjct: 129 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 188
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 189 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 179 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Query: 80 GAKSEED 86
GAK E+
Sbjct: 239 GAKVREE 245
>gi|356571702|ref|XP_003554013.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +H FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|242034379|ref|XP_002464584.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
gi|241918438|gb|EER91582.1| hypothetical protein SORBIDRAFT_01g021297 [Sorghum bicolor]
Length = 218
Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 29 PVDLARHPSGIVPALQNIVSTVNLDCQLDLKMIALQARNAEYNPKRFAAVIMRIREPKTT 88
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
AL+F+SGKMVCTGAKSEE S+LAARKYARI+QKLG+PAKF DFKIQNMVGSCDVKFPIRL
Sbjct: 89 ALVFASGKMVCTGAKSEEHSKLAARKYARIVQKLGYPAKFKDFKIQNMVGSCDVKFPIRL 148
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FS+YEPELFPGLIYRM P+IVLLIFVSGK+VLT
Sbjct: 149 EGLAFSHGAFSNYEPELFPGLIYRMKNPKIVLLIFVSGKIVLT 191
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 132 KIQNMVGSCDVKFPIRLEGLAFSHGAFSNYEPELFPGLIYRMKNPKIVLLIFVSGKIVLT 191
Query: 80 GAKSEED 86
GAK E+
Sbjct: 192 GAKVREE 198
>gi|361131465|gb|EHL03148.1| putative TATA-box-binding protein [Glarea lozoyensis 74030]
Length = 255
Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 136/173 (78%), Positives = 152/173 (87%), Gaps = 3/173 (1%)
Query: 1 MSPSTPGP-PMT--PVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
++P+TP P T P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAV
Sbjct: 58 VAPATPAATPGTSAPTGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAV 117
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VG
Sbjct: 118 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 177
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 178 SCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|18481630|gb|AAL73490.1|AF464907_1 TATA-binding protein TBP2 [Oryza sativa]
Length = 203
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 14 PVDLAKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 73
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKI N+VGSCDVKFPIRL
Sbjct: 74 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIXNIVGSCDVKFPIRL 133
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 134 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ NIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 117 KIXNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 176
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 177 GAKVRDETYTA 187
>gi|323305296|gb|EGA59043.1| Spt15p [Saccharomyces cerevisiae FostersB]
Length = 240
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 143/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPK FAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKXFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>gi|328856236|gb|EGG05358.1| hypothetical protein MELLADRAFT_75016 [Melampsora larici-populina
98AG31]
Length = 233
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 132/158 (83%), Positives = 145/158 (91%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
++ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+
Sbjct: 51 TNVQGIVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFA 110
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMV TGAKSE+DSRLAARKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL
Sbjct: 111 SGKMVVTGAKSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVKFPIRLEGLAY 170
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
HG FSSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 171 NHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 208
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 149 KIQNIVGSCDVKFPIRLEGLAYNHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 208
Query: 80 GAKSEED 86
GAK E+
Sbjct: 209 GAKVREE 215
>gi|255719850|ref|XP_002556205.1| KLTH0H07502p [Lachancea thermotolerans]
gi|238942171|emb|CAR30343.1| KLTH0H07502p [Lachancea thermotolerans CBS 6340]
Length = 230
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 143/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TVNL C+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 51 SGIVPTLQNIVATVNLDCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 110
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV GAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 111 MVVIGAKSEDDSKLASRKYARIIQKIGFSAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 170
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 171 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 205
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 146 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 205
Query: 80 GAKSEED 86
GAK E+
Sbjct: 206 GAKQREE 212
>gi|440638539|gb|ELR08458.1| TATA-box-binding protein [Geomyces destructans 20631-21]
Length = 262
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 150/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 67 VTPATPAATPGATQGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 126
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 127 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 186
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 187 DIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 237
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|115489282|ref|NP_001067128.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|77556288|gb|ABA99084.1| TATA-binding protein 2, putative, expressed [Oryza sativa Japonica
Group]
gi|113649635|dbj|BAF30147.1| Os12g0580300 [Oryza sativa Japonica Group]
gi|215736829|dbj|BAG95758.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 208
Score = 277 bits (709), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 19 PVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 78
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 79 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 138
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 139 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 181
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 122 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 181
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 182 GAKVRDETYTA 192
>gi|356568214|ref|XP_003552308.1| PREDICTED: TATA-box-binding protein-like [Glycine max]
Length = 200
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTV+L CKL+LK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVSLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|426200613|gb|EKV50537.1| hypothetical protein AGABI2DRAFT_44722, partial [Agaricus bisporus
var. bisporus H97]
Length = 189
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 11 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 71 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 131 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 164
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFS 72
D S ++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF
Sbjct: 98 DAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFV 157
Query: 73 SGKMVCTGAKSEED 86
SGK+V TGAK E+
Sbjct: 158 SGKIVLTGAKVREE 171
>gi|389749066|gb|EIM90243.1| TBP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 301
Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 123 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 182
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 183 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 242
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 243 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 276
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 217 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 276
Query: 80 GAKSEED 86
GAK E+
Sbjct: 277 GAKVREE 283
>gi|388580273|gb|EIM20589.1| TBP-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 238
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/175 (78%), Positives = 151/175 (86%), Gaps = 7/175 (4%)
Query: 3 PSTPGPPMTP--VDMG-----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFA 55
P TP TP D G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFA
Sbjct: 39 PPTPQAVQTPSHTDTGFTHSAGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFA 98
Query: 56 AVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNM 115
AVIMRIR+P+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF +FKIQN+
Sbjct: 99 AVIMRIRDPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFDAKFSEFKIQNI 158
Query: 116 VGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VGSCDVKFPIRLEGL THG FSSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 159 VGSCDVKFPIRLEGLAYTHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 213
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 154 KIQNIVGSCDVKFPIRLEGLAYTHGHFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 213
Query: 80 GAKSEED 86
GAK E+
Sbjct: 214 GAKVREE 220
>gi|453083461|gb|EMF11507.1| transcription initiation factor TFIID, TATA binding protein
[Mycosphaerella populorum SO2202]
Length = 258
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 150/172 (87%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 62 VTPATPAATPGQANTGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 121
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 122 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 181
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 182 CDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 233
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 174 KIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 233
Query: 80 GAKSEED 86
GAK E+
Sbjct: 234 GAKVREE 240
>gi|393238580|gb|EJD46116.1| TBP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 305
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 149/161 (92%), Gaps = 2/161 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
+T VD G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTAL
Sbjct: 122 ITAVD--GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTAL 179
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 129
IF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEG
Sbjct: 180 IFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEG 239
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 240 LAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 280
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 221 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 280
Query: 80 GAKSEED 86
GAK E+
Sbjct: 281 GAKVREE 287
>gi|336367903|gb|EGN96247.1| hypothetical protein SERLA73DRAFT_76226 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380633|gb|EGO21786.1| hypothetical protein SERLADRAFT_410307 [Serpula lacrymans var.
lacrymans S7.9]
Length = 306
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 145/154 (94%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 128 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 187
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEGL +HGQ
Sbjct: 188 VVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEGLAYSHGQ 247
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 248 FSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 281
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 222 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 281
Query: 80 GAKSEED 86
GAK E+
Sbjct: 282 GAKVREE 288
>gi|217075508|gb|ACJ86114.1| unknown [Medicago truncatula]
Length = 200
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|367029935|ref|XP_003664251.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
gi|347011521|gb|AEO59006.1| hypothetical protein MYCTH_2306864 [Myceliophthora thermophila ATCC
42464]
Length = 257
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 149/172 (86%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 61 VTPATPAATPGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 120
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 121 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 180
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 181 CDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|217075458|gb|ACJ86089.1| unknown [Medicago truncatula]
gi|388502544|gb|AFK39338.1| unknown [Medicago truncatula]
gi|388506912|gb|AFK41522.1| unknown [Medicago truncatula]
Length = 200
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLSKHPSGIVPTLQNIVSTVNLDCKLELKSIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEVQSKLAARKYARIIQKLGFPAKFKDFKIQNVVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGTFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNVVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|222617361|gb|EEE53493.1| hypothetical protein OsJ_36653 [Oryza sativa Japonica Group]
Length = 225
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 19 PVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 78
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 79 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 138
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 139 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 181
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 122 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 181
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 182 GAKVRDETYTA 192
>gi|354503979|ref|XP_003514057.1| PREDICTED: TATA box-binding protein-like protein 2-like [Cricetulus
griseus]
Length = 350
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/164 (81%), Positives = 149/164 (90%), Gaps = 2/164 (1%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV + G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 162 PMNPVPECSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 221
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
AL+FSSGK+VCTGAKSEE+SRLAARKYAR++QKLGFP KF +FKIQNMVGSCDVKFPIRL
Sbjct: 222 ALLFSSGKVVCTGAKSEEESRLAARKYARVVQKLGFPVKFFNFKIQNMVGSCDVKFPIRL 281
Query: 128 EGLVLTHGQF-SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QF SSYEPELFPGLIY+MV+P++VLLIF SGKVVLT
Sbjct: 282 EILALTHRQFSSSYEPELFPGLIYKMVRPQVVLLIFASGKVVLT 325
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHAR--NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QN+V + ++ + L+ +AL R ++ Y P+ F +I ++ P+ LIF+SGK+V
Sbjct: 265 KIQNMVGSCDVKFPIRLEILALTHRQFSSSYEPELFPGLIYKMVRPQVVLLIFASGKVVL 324
Query: 79 TGAKSEED 86
TGAK +
Sbjct: 325 TGAKERSE 332
>gi|367040469|ref|XP_003650615.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
gi|346997876|gb|AEO64279.1| hypothetical protein THITE_2110255 [Thielavia terrestris NRRL 8126]
Length = 256
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 149/172 (86%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 60 VTPATPAATPGAGPAGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 119
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 120 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 179
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 180 CDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 172 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Query: 80 GAKSEED 86
GAK E+
Sbjct: 232 GAKVREE 238
>gi|452989027|gb|EME88782.1| hypothetical protein MYCFIDRAFT_209898 [Pseudocercospora fijiensis
CIRAD86]
Length = 260
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 150/172 (87%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 64 VTPATPAATPGQANTGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 123
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 124 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 183
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 184 CDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 235
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 176 KIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 235
Query: 80 GAKSEED 86
GAK E+
Sbjct: 236 GAKVREE 242
>gi|39979630|ref|NP_951014.1| TATA box-binding protein-like protein 2 [Mus musculus]
gi|81870779|sp|Q6SJ95.1|TBPL2_MOUSE RecName: Full=TATA box-binding protein-like protein 2;
Short=TBP-like protein 2; AltName: Full=TATA box-binding
protein-related factor 3; Short=TBP-related factor 3
gi|38569211|gb|AAR24282.1| TBP-related factor 3 [Mus musculus]
gi|111600530|gb|AAI19161.1| TATA box binding protein like 2 [Mus musculus]
Length = 350
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 148/164 (90%), Gaps = 2/164 (1%)
Query: 9 PMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PM PV G VPQLQN+VST NL CKLDL+KIAL+A+N EYNPKRFAAVIMRIREPRTT
Sbjct: 162 PMNPVPGFSGIVPQLQNVVSTANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTT 221
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIFSSGK+VCTGAKSEE+SRLAARKYAR++QKLGFP +F +FKIQNMVGSCDVKFPIRL
Sbjct: 222 ALIFSSGKVVCTGAKSEEESRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRL 281
Query: 128 EGLVLTHGQF-SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L LTH QF SSYEPELFPGLIY+MVKP++VLLIF SGKVVLT
Sbjct: 282 EILALTHRQFSSSYEPELFPGLIYKMVKPQVVLLIFASGKVVLT 325
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHAR--NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QN+V + ++ + L+ +AL R ++ Y P+ F +I ++ +P+ LIF+SGK+V
Sbjct: 265 KIQNMVGSCDVKFPIRLEILALTHRQFSSSYEPELFPGLIYKMVKPQVVLLIFASGKVVL 324
Query: 79 TGAKSEED 86
TGAK +
Sbjct: 325 TGAKERSE 332
>gi|392573053|gb|EIW66195.1| hypothetical protein TREMEDRAFT_41045 [Tremella mesenterica DSM
1558]
Length = 255
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 148/163 (90%), Gaps = 2/163 (1%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P +T V G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAV+MRIREP+TT
Sbjct: 66 PEITAVQ--GLVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVVMRIREPKTT 123
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRL
Sbjct: 124 ALIFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFAEFKIQNIVGSCDVKFPIRL 183
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 184 EGLAYSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 226
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 167 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 226
Query: 80 GAKSEEDSRLA 90
GAK E+ +A
Sbjct: 227 GAKVREEIYMA 237
>gi|363814312|ref|NP_001242795.1| uncharacterized protein LOC100810213 [Glycine max]
gi|255644444|gb|ACU22726.1| unknown [Glycine max]
Length = 200
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 11 PVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFP KF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPPKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKVRDETYTA 184
>gi|224123800|ref|XP_002319167.1| global transcription factor group [Populus trichocarpa]
gi|222857543|gb|EEE95090.1| global transcription factor group [Populus trichocarpa]
Length = 202
Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKL+LK+IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 12 PVDLSKHPSGIVPTLQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTT 71
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 72 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 131
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+V+T
Sbjct: 132 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 115 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 175 GAKVREETYTA 185
>gi|398406521|ref|XP_003854726.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
gi|339474610|gb|EGP89702.1| transcription factor TFIID complex [Zymoseptoria tritici IPO323]
Length = 261
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/172 (77%), Positives = 150/172 (87%), Gaps = 2/172 (1%)
Query: 1 MSPSTPG--PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVI
Sbjct: 65 VTPATPAATPGQAGTGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVI 124
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 125 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 184
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 185 CDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 236
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 177 KIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 236
Query: 80 GAKSEED 86
GAK E+
Sbjct: 237 GAKVREE 243
>gi|302663669|ref|XP_003023473.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
gi|291187474|gb|EFE42855.1| hypothetical protein TRV_02367 [Trichophyton verrucosum HKI 0517]
Length = 275
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 148/171 (86%), Gaps = 7/171 (4%)
Query: 7 GPPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
G P TPV + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 62 GTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 121
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 122 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 181
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 182 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|168052908|ref|XP_001778881.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
gi|162669750|gb|EDQ56331.1| TATA-box binding protein, component of TFIID and TFIIIB
[Physcomitrella patens subsp. patens]
Length = 200
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 145/163 (88%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVN+ C+LDLKKIAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLAKHPSGIIPTLQNIVSTVNMDCRLDLKKIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF A F DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFQAHFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 131 EGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYAHGHFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK ++
Sbjct: 174 GAKVRDE 180
>gi|212526960|ref|XP_002143637.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526962|ref|XP_002143638.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|212526964|ref|XP_002143639.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|62956011|gb|AAY23352.1| TATA-binding protein [Talaromyces marneffei]
gi|62956013|gb|AAY23353.1| TATA-binding protein [Talaromyces marneffei]
gi|210073035|gb|EEA27122.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073036|gb|EEA27123.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
gi|210073037|gb|EEA27124.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces marneffei ATCC 18224]
Length = 255
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 151/171 (88%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP ++G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 60 VTPATPAATPGANNVGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 119
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 120 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 179
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 180 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 230
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|242782217|ref|XP_002479956.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|242782222|ref|XP_002479957.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720103|gb|EED19522.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
gi|218720104|gb|EED19523.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Talaromyces stipitatus ATCC 10500]
Length = 255
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 151/171 (88%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP ++G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 60 VTPATPAATPGANNVGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 119
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 120 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 179
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 180 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|218187146|gb|EEC69573.1| hypothetical protein OsI_38882 [Oryza sativa Indica Group]
Length = 221
Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/163 (82%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G +P LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 15 PVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 74
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 75 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 134
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 135 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKLVLT 177
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 118 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKLVLT 177
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 178 GAKVRDETYTA 188
>gi|345560531|gb|EGX43656.1| hypothetical protein AOL_s00215g392 [Arthrobotrys oligospora ATCC
24927]
Length = 257
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/174 (77%), Positives = 151/174 (86%), Gaps = 7/174 (4%)
Query: 2 SPSTPGPPMTPVDMGGS-----VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
+P+TP TP + G+ VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAA
Sbjct: 61 TPATPA--ATPSNGNGNGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAA 118
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+V
Sbjct: 119 VIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIV 178
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
GSCD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 179 GSCDIKFPIRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|346974478|gb|EGY17930.1| TATA-box-binding protein [Verticillium dahliae VdLs.17]
Length = 249
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P V G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 54 VTPATPAATPGALVGGSGLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 113
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 114 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 173
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 174 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 224
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 165 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 224
Query: 80 GAKSEED 86
GAK E+
Sbjct: 225 GAKVREE 231
>gi|296414351|ref|XP_002836865.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632706|emb|CAZ81056.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 150/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 58 VTPATPAATPGGGPTVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 117
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 118 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 177
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 178 DIKFPIRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHHFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEEDSRLA 90
GAK E+ +A
Sbjct: 229 GAKVREEIYIA 239
>gi|326522452|dbj|BAK07688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 132/163 (80%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLK+IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 44 PVDLARHPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTT 103
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSEE S+LAARKYARI+QKLGFPA F DFKIQN+V SCDVKFPIRL
Sbjct: 104 ALIFASGKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRL 163
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLL+FVSGK+VLT
Sbjct: 164 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV++ ++ + L+ +A H + Y P+ F +I R+++P+ L+F SGK+V T
Sbjct: 147 KIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 206
Query: 80 GAKSEED 86
GAK ++
Sbjct: 207 GAKVRDE 213
>gi|320591748|gb|EFX04187.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 265
Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 135/173 (78%), Positives = 150/173 (86%), Gaps = 5/173 (2%)
Query: 1 MSPSTPGPPMTPVDM---GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
++P+TP TPV M G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAV
Sbjct: 70 VAPATPV--ATPVAMHSGSGLTPTLQNIVATVNLACRLDLKTIALHARNAEYNPKRFAAV 127
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VG
Sbjct: 128 IMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVG 187
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCD+KFP+RLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK VLT
Sbjct: 188 SCDIKFPVRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKTVLT 240
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK V T
Sbjct: 181 KIQNIVGSCDIKFPVRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKTVLT 240
Query: 80 GAKSEED 86
GAK E+
Sbjct: 241 GAKVREE 247
>gi|119491905|ref|XP_001263447.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
gi|119411607|gb|EAW21550.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Neosartorya fischeri NRRL 181]
Length = 264
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 69 VTPATPAATPGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 128
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 129 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 188
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 189 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 180 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Query: 80 GAKSEED 86
GAK E+
Sbjct: 240 GAKVREE 246
>gi|135641|sp|P26356.1|TBP1_WHEAT RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|21875|emb|CAA42531.1| TATA binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 132/163 (80%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLK+IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 44 PVDLARHPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTT 103
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSEE S+LAARKYARI+QKLGFPA F DFKIQN+V SCDVKFPIRL
Sbjct: 104 ALIFASGKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRL 163
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLL+FVSGK+VLT
Sbjct: 164 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV++ ++ + L+ +A H + Y P+ F +I R+++P+ L+F SGK+V T
Sbjct: 147 KIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 206
Query: 80 GAKSEED 86
GAK ++
Sbjct: 207 GAKVRDE 213
>gi|3122925|sp|Q12731.1|TBP_EMENI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|887878|gb|AAB57874.1| TATA-box binding protein [Emericella nidulans]
gi|887880|gb|AAB57876.1| TATA-box binding protein [Emericella nidulans]
Length = 268
Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 134/169 (79%), Positives = 147/169 (86%), Gaps = 1/169 (0%)
Query: 3 PSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRI
Sbjct: 75 PATPAATPGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI 134
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
REP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+
Sbjct: 135 REPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDI 194
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 KFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 243
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 184 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 243
Query: 80 GAKSEED 86
GAK E+
Sbjct: 244 GAKVREE 250
>gi|540195|gb|AAA79368.1| TATA binding protein [Pneumocystis wakefieldiae]
Length = 229
Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IAL RNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 48 VSGIVPSLQNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASG 107
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 108 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 167
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 168 GTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 203
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 144 KIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 203
Query: 80 GAKSEED 86
GAK E+
Sbjct: 204 GAKVREE 210
>gi|70999782|ref|XP_754608.1| RNA polymerase I and III transcription factor complex component Tbp
[Aspergillus fumigatus Af293]
gi|66852245|gb|EAL92570.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus Af293]
gi|159127621|gb|EDP52736.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus fumigatus A1163]
Length = 283
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 69 VTPATPAATPGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 128
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 129 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 188
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 189 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 180 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Query: 80 GAKSEED 86
GAK E+
Sbjct: 240 GAKVREE 246
>gi|358368366|dbj|GAA84983.1| TATA-box binding protein [Aspergillus kawachii IFO 4308]
Length = 262
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 67 VAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 126
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 127 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 186
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 187 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|317036144|ref|XP_001397705.2| TATA-box-binding protein [Aspergillus niger CBS 513.88]
Length = 262
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 67 VAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 126
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 127 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 186
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 187 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|357146320|ref|XP_003573949.1| PREDICTED: TATA-box-binding protein 1-like [Brachypodium
distachyon]
Length = 235
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 132/163 (80%), Positives = 146/163 (89%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLK+IAL ARNAEYNPKRFAAVIMRIR+P+TT
Sbjct: 46 PVDLARHPSGIVPVLQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTT 105
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSEE S+LAARKYARI+QKLGFPA F DFKIQN+V SCDVKFPIRL
Sbjct: 106 ALIFASGKMVCTGAKSEEHSKLAARKYARIVQKLGFPATFKDFKIQNIVASCDVKFPIRL 165
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPELFPGLIYRM +P+IVLL+FVSGK+VLT
Sbjct: 166 EGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 208
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV++ ++ + L+ +A H + Y P+ F +I R+++P+ L+F SGK+V T
Sbjct: 149 KIQNIVASCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLT 208
Query: 80 GAKSEED 86
GAK ++
Sbjct: 209 GAKVRDE 215
>gi|115396162|ref|XP_001213720.1| TATA-box binding protein [Aspergillus terreus NIH2624]
gi|114193289|gb|EAU34989.1| TATA-box binding protein [Aspergillus terreus NIH2624]
Length = 263
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 68 VTPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 127
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 128 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 187
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 188 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 179 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Query: 80 GAKSEED 86
GAK E+
Sbjct: 239 GAKVREE 245
>gi|225556591|gb|EEH04879.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
G186AR]
gi|240273705|gb|EER37225.1| TATA-binding protein [Ajellomyces capsulatus H143]
gi|325087599|gb|EGC40909.1| transcription initiation factor TFIID-2 [Ajellomyces capsulatus
H88]
Length = 262
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 148/167 (88%), Gaps = 1/167 (0%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
+TPG P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIRE
Sbjct: 72 ATPGAGAGP-GVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRE 130
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KF
Sbjct: 131 PKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKF 190
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 PIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|19115478|ref|NP_594566.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe 972h-]
gi|135639|sp|P17871.1|TBP_SCHPO RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|295936|emb|CAA37494.1| TFIID [Schizosaccharomyces pombe]
gi|1044934|emb|CAA91430.1| transcription initiation factor tfiid [Schizosaccharomyces pombe]
gi|6723895|emb|CAB66471.1| TATA-binding protein (TBP) [Schizosaccharomyces pombe]
gi|226987|prf||1612348A transcription factor IID
Length = 231
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP++TALIF+SG
Sbjct: 51 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASG 110
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV G KSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 111 KMVVLGGKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDVKFPIRLEGLAYSH 170
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G FSSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 171 GTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 206
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 147 KIQNIVGSCDVKFPIRLEGLAYSHGTFSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 206
Query: 80 GAKSEED 86
GAK E+
Sbjct: 207 GAKVREE 213
>gi|358335036|dbj|GAA53489.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 436
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 136/169 (80%), Positives = 148/169 (87%)
Query: 2 SPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
+P+T P+ D G PQLQNIV TV LGCKL+LK+IAL ARNAEYNPKRFAAVIMRI
Sbjct: 227 TPNTLATPLHERDGGIPQPQLQNIVCTVYLGCKLNLKQIALSARNAEYNPKRFAAVIMRI 286
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
REPRTTALIFSSGKMVCTGAKSEE +RLAARKYARIIQKLGF A F +FKIQNMVGSCDV
Sbjct: 287 REPRTTALIFSSGKMVCTGAKSEERARLAARKYARIIQKLGFEAHFKEFKIQNMVGSCDV 346
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+F IRLEGLVL GQF++YEPELFPGLIYRM KP+IVLLIFVSGK+VLT
Sbjct: 347 RFHIRLEGLVLAQGQFATYEPELFPGLIYRMTKPKIVLLIFVSGKIVLT 395
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L + A Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 336 KIQNMVGSCDVRFHIRLEGLVLAQGQFATYEPELFPGLIYRMTKPKIVLLIFVSGKIVLT 395
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAK 106
GAK ++ A R I++ P K
Sbjct: 396 GAKVRDEIYEAFRNIYPILKNFRKPDK 422
>gi|261194208|ref|XP_002623509.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239588523|gb|EEQ71166.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
SLH14081]
gi|239606906|gb|EEQ83893.1| transcription initiation factor TFIID-2 [Ajellomyces dermatitidis
ER-3]
gi|327351372|gb|EGE80229.1| hypothetical protein BDDG_03170 [Ajellomyces dermatitidis ATCC
18188]
Length = 262
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 148/167 (88%), Gaps = 1/167 (0%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
+TPG P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIRE
Sbjct: 72 ATPGAGAGP-GVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRE 130
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KF
Sbjct: 131 PKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKF 190
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 PIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|121705502|ref|XP_001271014.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
gi|119399160|gb|EAW09588.1| RNA polymerase I and III transcription factor complex component
Tbp, putative [Aspergillus clavatus NRRL 1]
Length = 273
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 69 VTPATPAATPGANAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 128
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 129 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 188
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 189 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 180 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 239
Query: 80 GAKSEED 86
GAK E+
Sbjct: 240 GAKVREE 246
>gi|322711070|gb|EFZ02644.1| TATA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 253
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 133/171 (77%), Positives = 148/171 (86%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 58 VTPATPAATPSATQGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 117
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 118 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 177
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 178 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|303317340|ref|XP_003068672.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108353|gb|EER26527.1| TATA-box-binding protein, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320038620|gb|EFW20555.1| TATA-box binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/170 (78%), Positives = 149/170 (87%), Gaps = 1/170 (0%)
Query: 2 SPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMR
Sbjct: 58 APATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 117
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD
Sbjct: 118 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 177
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 178 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 227
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 168 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 227
Query: 80 GAKSEED 86
GAK E+
Sbjct: 228 GAKVREE 234
>gi|224145959|ref|XP_002325828.1| global transcription factor group [Populus trichocarpa]
gi|222862703|gb|EEF00210.1| global transcription factor group [Populus trichocarpa]
Length = 201
Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 147/163 (90%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL C+LDLK+IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 12 PVDLSKHPSGIVPILQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTT 71
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGF AKF DFKIQN+VGSCDVKFPIRL
Sbjct: 72 ALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKDFKIQNIVGSCDVKFPIRL 131
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +HG FSSYEPE+FPGLIYRM +P+IVLLIFVSGK+V+T
Sbjct: 132 EGLAYSHGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 115 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPEIFPGLIYRMKQPKIVLLIFVSGKIVIT 174
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 175 GAKVRDETYTA 185
>gi|326471025|gb|EGD95034.1| TATA-box-binding protein [Trichophyton tonsurans CBS 112818]
Length = 257
Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 148/171 (86%), Gaps = 7/171 (4%)
Query: 7 GPPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
G P TPV + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 62 GTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 121
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 122 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 181
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 182 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|169770491|ref|XP_001819715.1| TATA-box-binding protein [Aspergillus oryzae RIB40]
gi|238487092|ref|XP_002374784.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|83767574|dbj|BAE57713.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699663|gb|EED56002.1| transcription factor TFIID [Aspergillus flavus NRRL3357]
gi|391867294|gb|EIT76540.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aspergillus oryzae 3.042]
Length = 263
Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 68 VTPATPVATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 127
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 128 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 187
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 188 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 179 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 238
Query: 80 GAKSEED 86
GAK E+
Sbjct: 239 GAKVREE 245
>gi|259482151|tpe|CBF76358.1| TPA: TATA-box-binding protein (TATA-box factor)(TATA-binding
factor)(TATA sequence-binding
protein)(TBP)(Transcription initiation factor TFIID TBP
subunit) [Source:UniProtKB/Swiss-Prot;Acc:Q12731]
[Aspergillus nidulans FGSC A4]
Length = 284
Score = 274 bits (701), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 134/169 (79%), Positives = 147/169 (86%), Gaps = 1/169 (0%)
Query: 3 PSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRI
Sbjct: 75 PATPAATPGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI 134
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
REP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+
Sbjct: 135 REPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDI 194
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 KFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 243
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 184 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 243
Query: 80 GAKSEED 86
GAK E+
Sbjct: 244 GAKVREE 250
>gi|164656154|ref|XP_001729205.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
gi|159103095|gb|EDP41991.1| hypothetical protein MGL_3672 [Malassezia globosa CBS 7966]
Length = 257
Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/169 (78%), Positives = 149/169 (88%), Gaps = 2/169 (1%)
Query: 4 STPGP--PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
S P P T +M G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRI
Sbjct: 57 SIPAPITEQTLSNMHGIVPTLQNIVATVNLEARLDLKTIALHARNAEYNPKRFAAVIMRI 116
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
REP+TTALIF+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF A+F +FKIQN+VGSCDV
Sbjct: 117 REPKTTALIFASGKMVITGAKSEDDSRLASRKYARIIQKLGFEARFSEFKIQNIVGSCDV 176
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+FPIRLEGL +HG +SSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 177 RFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 225
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 166 KIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 225
Query: 80 GAKS 83
GAKS
Sbjct: 226 GAKS 229
>gi|134083254|emb|CAK46825.1| unnamed protein product [Aspergillus niger]
gi|350633630|gb|EHA21995.1| hypothetical protein ASPNIDRAFT_210581 [Aspergillus niger ATCC
1015]
Length = 282
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 149/171 (87%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 67 VAPATPAATPGANTPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 126
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 127 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 186
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 187 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|342879468|gb|EGU80715.1| hypothetical protein FOXB_08755 [Fusarium oxysporum Fo5176]
Length = 254
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/171 (77%), Positives = 148/171 (86%), Gaps = 1/171 (0%)
Query: 1 MSPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 59 VAPATPVATPAATQGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 118
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 119 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 178
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 179 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 229
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 170 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 229
Query: 80 GAKSEED 86
GAK E+
Sbjct: 230 GAKVREE 236
>gi|449296869|gb|EMC92888.1| hypothetical protein BAUCODRAFT_76816 [Baudoinia compniacensis UAMH
10762]
Length = 240
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 60 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 119
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 120 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 179
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 180 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 215
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKVREE 222
>gi|392870835|gb|EAS32669.2| TATA-box-binding protein [Coccidioides immitis RS]
Length = 299
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/170 (78%), Positives = 149/170 (87%), Gaps = 1/170 (0%)
Query: 2 SPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+P+TP P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMR
Sbjct: 105 APATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMR 164
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD
Sbjct: 165 IREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCD 224
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 225 IKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 274
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 215 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 274
Query: 80 GAKSEED 86
GAK E+
Sbjct: 275 GAKVREE 281
>gi|256089271|ref|XP_002580736.1| TATA-box binding protein [Schistosoma mansoni]
gi|350646100|emb|CCD59202.1| TATA-box binding protein, putative [Schistosoma mansoni]
Length = 271
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/172 (79%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 2 SPSTPGPPMTPV-DMGGS--VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
+P TP TP+ D G+ VPQLQNIV TV LGCKL+LK IAL ARNAEYNPKRFAAVI
Sbjct: 57 TPCTPLTLSTPLQDRDGAIPVPQLQNIVCTVYLGCKLNLKNIALSARNAEYNPKRFAAVI 116
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE +RLAARKYARIIQ+LGF A F +FKIQNMVGS
Sbjct: 117 MRIREPRTTALIFSSGKMVCTGAKSEEQARLAARKYARIIQRLGFEAHFKEFKIQNMVGS 176
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+F IRLEGLVL+ GQF++YEPELFPGLIYRM KP+IVLL+FVSGK+VLT
Sbjct: 177 CDVRFHIRLEGLVLSQGQFATYEPELFPGLIYRMTKPKIVLLVFVSGKIVLT 228
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L + A Y P+ F +I R+ +P+ L+F SGK+V T
Sbjct: 169 KIQNMVGSCDVRFHIRLEGLVLSQGQFATYEPELFPGLIYRMTKPKIVLLVFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|85096222|ref|XP_960219.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|28921702|gb|EAA30983.1| TATA-box binding protein [Neurospora crassa OR74A]
gi|39979211|emb|CAE85582.1| probable TRANSCRIPTION INITIATION FACTOR TFIID [Neurospora crassa]
Length = 257
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|336465922|gb|EGO54087.1| hypothetical protein NEUTE1DRAFT_118055 [Neurospora tetrasperma
FGSC 2508]
gi|350287243|gb|EGZ68490.1| putative transcription initiation factor [Neurospora tetrasperma
FGSC 2509]
Length = 257
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|378727024|gb|EHY53483.1| TATA-box-binding protein [Exophiala dermatitidis NIH/UT8656]
Length = 268
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 146/164 (89%), Gaps = 1/164 (0%)
Query: 8 PPMTP-VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
P TP + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+T
Sbjct: 72 PSATPGAGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKT 131
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIR
Sbjct: 132 TALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIR 191
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 192 LEGLASKHHPFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 176 KIQNIVGSCDIKFPIRLEGLASKHHPFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Query: 80 GAKSEED 86
GAK E+
Sbjct: 236 GAKVREE 242
>gi|353234891|emb|CCA66911.1| probable TATA-box-binding factor TBP [Piriformospora indica DSM
11827]
Length = 297
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/157 (82%), Positives = 146/157 (92%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++ G VP LQNIV+TVNLG +LDLK IA+HARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 116 NVEGIVPILQNIVATVNLGTRLDLKTIAMHARNAEYNPKRFAAVIMRIREPKTTALIFAS 175
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
G+MV TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDVKFPIRLEGL
Sbjct: 176 GQMVVTGAKSEDDSRLASRKYARIIQKLGFDAKFTEFKIQNIVGSCDVKFPIRLEGLHYG 235
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
HG+FSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 236 HGKFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 272
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ + H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 213 KIQNIVGSCDVKFPIRLEGLHYGHGKFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 272
Query: 80 GAKSEED 86
GAK E+
Sbjct: 273 GAKVREE 279
>gi|154284482|ref|XP_001543036.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
gi|150406677|gb|EDN02218.1| TATA-box binding protein [Ajellomyces capsulatus NAm1]
Length = 268
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 148/167 (88%), Gaps = 1/167 (0%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
+TPG P + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIRE
Sbjct: 72 ATPGAGAGP-GVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRE 130
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTALIF+SGKMV TGAKSE+DS+LA++KYARIIQKLGF AKF DFKIQN+VGSCD+KF
Sbjct: 131 PKTTALIFASGKMVVTGAKSEDDSKLASKKYARIIQKLGFNAKFTDFKIQNIVGSCDIKF 190
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 PIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 178 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 237
Query: 80 GAKSEED 86
GAK E+
Sbjct: 238 GAKVREE 244
>gi|408395610|gb|EKJ74788.1| hypothetical protein FPSE_05036 [Fusarium pseudograminearum CS3096]
Length = 254
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/171 (77%), Positives = 148/171 (86%), Gaps = 1/171 (0%)
Query: 1 MSPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P+TP P G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 59 VAPATPVATPAATQGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 118
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSC
Sbjct: 119 RIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSC 178
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 179 DIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 229
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 170 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 229
Query: 80 GAKSEED 86
GAK E+
Sbjct: 230 GAKVREE 236
>gi|171681966|ref|XP_001905926.1| hypothetical protein [Podospora anserina S mat+]
gi|170940942|emb|CAP66592.1| unnamed protein product [Podospora anserina S mat+]
Length = 255
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 77 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 196
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|443925999|gb|ELU44748.1| transcription initiation factor TFIID-1 [Rhizoctonia solani AG-1
IA]
Length = 985
Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/161 (81%), Positives = 148/161 (91%), Gaps = 3/161 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
+T VD G VP L NIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTAL
Sbjct: 62 ITAVD--GIVPTL-NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTAL 118
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 129
IF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIRLEG
Sbjct: 119 IFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIRLEG 178
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 179 LAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 219
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 160 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMLKPKVVLLIFVSGKIVLT 219
Query: 80 GAK 82
GAK
Sbjct: 220 GAK 222
>gi|79313217|ref|NP_001030688.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|332641835|gb|AEE75356.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
Length = 196
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 145/164 (88%), Gaps = 4/164 (2%)
Query: 11 TPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+T
Sbjct: 10 NPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKT 69
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIR
Sbjct: 70 TALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIR 129
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 130 LEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Query: 80 GAK 82
GAK
Sbjct: 174 GAK 176
>gi|15231241|ref|NP_187953.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|135626|sp|P28147.1|TBP1_ARATH RecName: Full=TATA-box-binding protein 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP-1; AltName:
Full=TATA-binding factor 1; AltName: Full=TATA-box
factor 1; AltName: Full=Transcription initiation factor
TFIID TBP-1 subunit
gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245867|pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245897|pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245909|pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
gi|11692888|gb|AAG40047.1|AF324696_1 AT3g13445 [Arabidopsis thaliana]
gi|11935207|gb|AAG42019.1|AF327429_1 putative transcription initiation factor TFIID-1 [Arabidopsis
thaliana]
gi|13194816|gb|AAK15570.1|AF349523_1 putative TATA sequence-binding transcription initiation factor
protein [Arabidopsis thaliana]
gi|16548|emb|CAA38743.1| transcription initiation factor II [Arabidopsis thaliana]
gi|9280296|dbj|BAB01751.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|15451056|gb|AAK96799.1| transcription initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
gi|18377408|gb|AAL66870.1| transcription initiation factor TFIID-1 [Arabidopsis thaliana]
gi|21537103|gb|AAM61444.1| transcription initiation factor TFIID-1 (TATA sequence-binding
protein 1) [Arabidopsis thaliana]
gi|39545928|gb|AAR28027.1| TBP1 [Arabidopsis thaliana]
gi|225898637|dbj|BAH30449.1| hypothetical protein [Arabidopsis thaliana]
gi|332641834|gb|AEE75355.1| TATA-box-binding protein 1 [Arabidopsis thaliana]
gi|227074|prf||1613452B transcription initiation factor TFIID-2
Length = 200
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 145/164 (88%), Gaps = 4/164 (2%)
Query: 11 TPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+T
Sbjct: 10 NPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKT 69
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIR
Sbjct: 70 TALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIR 129
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 130 LEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 174 GAKMRDETYKA 184
>gi|407927098|gb|EKG20002.1| TATA-box binding protein [Macrophomina phaseolina MS6]
Length = 250
Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 70 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 129
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 130 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 189
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 190 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 225
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 166 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 225
Query: 80 GAKSEED 86
GAK E+
Sbjct: 226 GAKVREE 232
>gi|402588148|gb|EJW82082.1| TATA box binding protein [Wuchereria bancrofti]
Length = 198
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/172 (79%), Positives = 149/172 (86%), Gaps = 8/172 (4%)
Query: 3 PSTPGPPMTPVDMGGSVPQLQNIVSTVNLG----CKLDLKKIALHARNAEYNPKRFAAVI 58
P TPG + +D+ P LQNIVSTVNLG C +KIALHARNAEYNPKRFAAVI
Sbjct: 7 PQTPGSQL--IDIPS--PALQNIVSTVNLGESLKCAAGFEKIALHARNAEYNPKRFAAVI 62
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKF +FK+QNMVGS
Sbjct: 63 MRIREPRTTALIFSSGKMVCTGAKSEESSRLAARKYARIVQKLGFNAKFTEFKVQNMVGS 122
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDV+FPI+LEGL LTH QFS+YEPELFPGLIYRMVKPR+VLLIFVSGKVV+T
Sbjct: 123 CDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 174
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 115 KVQNMVGSCDVRFPIQLEGLCLTHTQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVIT 174
Query: 80 GAKSEED 86
GAK ++D
Sbjct: 175 GAKYKKD 181
>gi|336276668|ref|XP_003353087.1| hypothetical protein SMAC_03405 [Sordaria macrospora k-hell]
gi|380092572|emb|CCC09849.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 79 GMTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 138
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 139 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASKHHN 198
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 199 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|296824240|ref|XP_002850621.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
gi|238838175|gb|EEQ27837.1| TATA-box-binding protein [Arthroderma otae CBS 113480]
Length = 266
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 86 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 145
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 146 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 205
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 206 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 241
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 182 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 241
Query: 80 GAKSEED 86
GAK E+
Sbjct: 242 GAKVREE 248
>gi|451854730|gb|EMD68022.1| hypothetical protein COCSADRAFT_156488 [Cochliobolus sativus
ND90Pr]
gi|452000886|gb|EMD93346.1| hypothetical protein COCHEDRAFT_1153946 [Cochliobolus
heterostrophus C5]
Length = 249
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 132/168 (78%), Positives = 144/168 (85%), Gaps = 5/168 (2%)
Query: 8 PPMTPVDMGGSVPQ-----LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIR 62
P TP G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIR
Sbjct: 57 PAATPDTQNGQVPSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIR 116
Query: 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVK 122
EP+TTAL+F+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF DFKIQN+VGSCD++
Sbjct: 117 EPKTTALVFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIR 176
Query: 123 FPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPIRLEGL H FSSYEPELFPGLIYRM+KPRIVLLIFVSGK+VLT
Sbjct: 177 FPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLT 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 165 KIQNIVGSCDIRFPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLT 224
Query: 80 GAKSEED 86
GAK E+
Sbjct: 225 GAKVREE 231
>gi|67537612|ref|XP_662580.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
gi|40741864|gb|EAA61054.1| TF22_MAIZE Transcription initiation factor TFIID-2 (TATA-box factor
2) (TATA sequence-binding protein 2) (TBP-2)
[Aspergillus nidulans FGSC A4]
Length = 211
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/169 (79%), Positives = 147/169 (86%), Gaps = 1/169 (0%)
Query: 3 PSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
P+TP P G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRI
Sbjct: 2 PATPAATPGASAPGSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI 61
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
REP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+
Sbjct: 62 REPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDI 121
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 122 KFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 170
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 111 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 170
Query: 80 GAKSEED 86
GAK E+
Sbjct: 171 GAKVREE 177
>gi|297853252|ref|XP_002894507.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
gi|297340349|gb|EFH70766.1| hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp.
lyrata]
Length = 200
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 144/163 (88%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 131 EGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKMREETYTA 184
>gi|315055559|ref|XP_003177154.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
gi|311339000|gb|EFQ98202.1| TATA-box-binding protein [Arthroderma gypseum CBS 118893]
Length = 257
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 77 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 136
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 137 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 196
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 197 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKVREE 239
>gi|15222732|ref|NP_175948.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|30695955|ref|NP_849812.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|135627|sp|P28148.1|TBP2_ARATH RecName: Full=TATA-box-binding protein 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP-2; AltName:
Full=TATA-binding factor 2; AltName: Full=TATA-box
factor 2; AltName: Full=Transcription initiation factor
TFIID TBP-2 subunit
gi|16546|emb|CAA38742.1| transcription initiation factor II [Arabidopsis thaliana]
gi|4204264|gb|AAD10645.1| transcription initiation factor II [Arabidopsis thaliana]
gi|30102756|gb|AAP21296.1| At1g55520 [Arabidopsis thaliana]
gi|39545930|gb|AAR28028.1| TBP2 [Arabidopsis thaliana]
gi|110743161|dbj|BAE99472.1| transcription initiation factor TFIID-2 [Arabidopsis thaliana]
gi|225898024|dbj|BAH30344.1| hypothetical protein [Arabidopsis thaliana]
gi|332195136|gb|AEE33257.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|332195137|gb|AEE33258.1| TATA-box-binding protein 2 [Arabidopsis thaliana]
gi|227073|prf||1613452A transcription initiation factor TFIID-1
Length = 200
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/163 (82%), Positives = 144/163 (88%), Gaps = 4/163 (2%)
Query: 12 PVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 11 PVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 70
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE S+LAARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 71 ALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 130
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 131 EGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHSAFSSYEPELFPGLIYRMKLPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKMREETYTA 184
>gi|295670940|ref|XP_002796017.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284150|gb|EEH39716.1| TATA-box-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 265
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 85 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 144
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 145 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 204
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 205 HNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 181 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Query: 80 GAKSEED 86
GAK E+
Sbjct: 241 GAKVREE 247
>gi|339961162|pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
gi|339961163|pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/163 (81%), Positives = 145/163 (88%), Gaps = 4/163 (2%)
Query: 12 PVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
PVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TT
Sbjct: 1 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 60
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
ALIF+SGKMVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRL
Sbjct: 61 ALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 120
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 121 EGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 163
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 104 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 163
Query: 80 GAKSEEDS 87
GAK +++
Sbjct: 164 GAKMRDET 171
>gi|396467023|ref|XP_003837823.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
gi|312214387|emb|CBX94379.1| similar to transcription initiation factor TFIID [Leptosphaeria
maculans JN3]
Length = 246
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/167 (79%), Positives = 145/167 (86%), Gaps = 4/167 (2%)
Query: 8 PPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
P TP G G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIRE
Sbjct: 55 PAATPDTNGQVPSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIRE 114
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTAL+F+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KF
Sbjct: 115 PKTTALVFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKF 174
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 175 PIRLEGLASRHHTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 221
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 162 KIQNIVGSCDIKFPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 221
Query: 80 GAKSEED 86
GAK E+
Sbjct: 222 GAKVREE 228
>gi|255728115|ref|XP_002548983.1| TATA-box binding protein [Candida tropicalis MYA-3404]
gi|240133299|gb|EER32855.1| TATA-box binding protein [Candida tropicalis MYA-3404]
Length = 257
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/171 (78%), Positives = 146/171 (85%), Gaps = 3/171 (1%)
Query: 3 PSTPGPPMTPVDMG---GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
PS P D G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 62 PSDVIEPKQEDDDGATSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 121
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIR+P+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 122 RIRDPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGST 181
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKF IRLEGL HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 182 DVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 232
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 173 KIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 232
Query: 80 GAKSEED 86
GAK E+
Sbjct: 233 GAKKREE 239
>gi|406862826|gb|EKD15875.1| transcription initiation factor TFIID-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 264
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 84 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 143
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 144 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 203
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 204 HNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 239
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 180 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 239
Query: 80 GAKSEED 86
GAK E+
Sbjct: 240 GAKVREE 246
>gi|225681638|gb|EEH19922.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb03]
gi|226288778|gb|EEH44290.1| TATA-box-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 265
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 142/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 87 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 146
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 147 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 206
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 207 FSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 181 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 240
Query: 80 GAKSEED 86
GAK E+
Sbjct: 241 GAKVREE 247
>gi|241949839|ref|XP_002417642.1| TATA sequence-binding protein, putative; TATA-binding factor,
putative; TATA-box binding protein, putative; TATA-box
factor, putative; transcription initiation factor tfIID
TBP subunit, putative [Candida dubliniensis CD36]
gi|223640980|emb|CAX45328.1| TATA sequence-binding protein, putative [Candida dubliniensis CD36]
Length = 233
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 144/164 (87%), Gaps = 1/164 (0%)
Query: 8 PPMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
P D G G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+T
Sbjct: 45 PKQEDTDGGIGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKT 104
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS DVKF IR
Sbjct: 105 TALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIR 164
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL HG FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 165 LEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 149 KIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Query: 80 GAKSEED 86
GAK E+
Sbjct: 209 GAKKREE 215
>gi|55583664|gb|AAV53354.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 340
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/177 (74%), Positives = 150/177 (84%), Gaps = 8/177 (4%)
Query: 2 SPSTPGPPMTPVDM--------GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR 53
+P PP+T ++ G PQLQN+V+TVNLG KLDLK+IA+HARNAEYNPKR
Sbjct: 9 APPVATPPLTAANVEAEMAAHVSGITPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKR 68
Query: 54 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQ 113
FAAVIMRIREP+TTALIF+SGKMVCTGAKSE+DSR AAR+YA+I+QKLGFPA F +FKIQ
Sbjct: 69 FAAVIMRIREPKTTALIFASGKMVCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQ 128
Query: 114 NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
N+VGSCDVKFPIRLEGL H F+SYEPELFPGLIYRM +P+IVLLIFVSGKVVLT
Sbjct: 129 NIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 185
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ A Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 126 KIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 185
Query: 80 GAKS 83
GAK+
Sbjct: 186 GAKT 189
>gi|189192825|ref|XP_001932751.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|330941403|ref|XP_003306059.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
gi|187978315|gb|EDU44941.1| TATA-box-binding protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|311316652|gb|EFQ85856.1| hypothetical protein PTT_19076 [Pyrenophora teres f. teres 0-1]
Length = 249
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 132/168 (78%), Positives = 144/168 (85%), Gaps = 5/168 (2%)
Query: 8 PPMTPVDMGGSVPQ-----LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIR 62
P TP G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIR
Sbjct: 57 PAATPDTQNGQVPSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIR 116
Query: 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVK 122
EP+TTAL+F+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF DFKIQN+VGSCD++
Sbjct: 117 EPKTTALVFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFSAKFTDFKIQNIVGSCDIR 176
Query: 123 FPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPIRLEGL H FSSYEPELFPGLIYRM+KPRIVLLIFVSGK+VLT
Sbjct: 177 FPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLT 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 165 KIQNIVGSCDIRFPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPRIVLLIFVSGKIVLT 224
Query: 80 GAKSEED 86
GAK E+
Sbjct: 225 GAKVREE 231
>gi|358386238|gb|EHK23834.1| hypothetical protein TRIVIDRAFT_89322 [Trichoderma virens Gv29-8]
Length = 253
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|452839378|gb|EME41317.1| TATA-box binding-like protein [Dothistroma septosporum NZE10]
Length = 254
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/156 (83%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SG
Sbjct: 74 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 133
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 134 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 193
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 194 HMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 229
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 170 KIQNIVGSCDIKFPIRLEGLASRHHMFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 229
Query: 80 GAKSEED 86
GAK E+
Sbjct: 230 GAKVREE 236
>gi|302773061|ref|XP_002969948.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
gi|302799318|ref|XP_002981418.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300150958|gb|EFJ17606.1| hypothetical protein SELMODRAFT_37142 [Selaginella moellendorffii]
gi|300162459|gb|EFJ29072.1| hypothetical protein SELMODRAFT_16705 [Selaginella moellendorffii]
Length = 196
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 127/154 (82%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVN+ CKL+LK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 16 GIVPTLQNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 75
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE++ RLAARKYARIIQKLGFP++F DFKIQN+VGSCDV+FPIRLEGL +HG
Sbjct: 76 VCTGAKSEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDVRFPIRLEGLAFSHGH 135
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FS+YEPE+FPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 136 FSTYEPEIFPGLIYRMKQPKIVLLIFVSGKIVLT 169
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 110 KIQNIVGSCDVRFPIRLEGLAFSHGHFSTYEPEIFPGLIYRMKQPKIVLLIFVSGKIVLT 169
Query: 80 GAKSEED 86
GAK ++
Sbjct: 170 GAKVRDE 176
>gi|170674514|gb|ACB30147.1| TATA binding protein [Epichloe festucae]
Length = 256
Score = 272 bits (695), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 78 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 137
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 138 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 197
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 198 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 172 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Query: 80 GAKSEED 86
GAK E+
Sbjct: 232 GAKVREE 238
>gi|156053057|ref|XP_001592455.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980]
gi|154704474|gb|EDO04213.1| TATA-box binding protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 251
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SG
Sbjct: 71 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASG 130
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 131 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 190
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 MNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 226
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 167 KIQNIVGSCDIKFPIRLEGLASRHMNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 226
Query: 80 GAKSEED 86
GAK E+
Sbjct: 227 GAKVREE 233
>gi|380491274|emb|CCF35436.1| TATA-box-binding protein [Colletotrichum higginsianum]
Length = 304
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 143/157 (91%), Gaps = 2/157 (1%)
Query: 16 GGS--VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
GGS P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 77 GGSGLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 136
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL
Sbjct: 137 GKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASR 196
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 197 HHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 233
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 174 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 233
Query: 80 GAKSEED 86
GAK E+
Sbjct: 234 GAKVREE 240
>gi|340517005|gb|EGR47251.1| TATA binding protein [Trichoderma reesei QM6a]
Length = 253
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|302833409|ref|XP_002948268.1| TATA-box binding protein [Volvox carteri f. nagariensis]
gi|300266488|gb|EFJ50675.1| TATA-box binding protein [Volvox carteri f. nagariensis]
Length = 338
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/154 (82%), Positives = 142/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G PQLQN+V+TVNLG KLDLK+IA+HARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 7 GITPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 66
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE+DSR AAR+YA+I+QKLGFPA F +FKIQN+VGSCDVKFPIRLEGL H
Sbjct: 67 VCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSL 126
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F+SYEPELFPGLIYRM +P+IVLLIFVSGKVVLT
Sbjct: 127 FASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 160
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ A Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 101 KIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 160
Query: 80 GAKS 83
GAK+
Sbjct: 161 GAKT 164
>gi|310798673|gb|EFQ33566.1| transcription factor TFIID [Glomerella graminicola M1.001]
Length = 256
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 143/157 (91%), Gaps = 2/157 (1%)
Query: 16 GGS--VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
GGS P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 75 GGSGLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 134
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL
Sbjct: 135 GKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASR 194
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 HHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 172 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Query: 80 GAKSEED 86
GAK E+
Sbjct: 232 GAKVREE 238
>gi|358394886|gb|EHK44279.1| hypothetical protein TRIATDRAFT_300545 [Trichoderma atroviride IMI
206040]
Length = 253
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|302918240|ref|XP_003052617.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733557|gb|EEU46904.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 253
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|169606198|ref|XP_001796519.1| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
gi|160706937|gb|EAT85966.2| hypothetical protein SNOG_06135 [Phaeosphaeria nodorum SN15]
Length = 247
Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 132/168 (78%), Positives = 144/168 (85%), Gaps = 5/168 (2%)
Query: 8 PPMTPVDMGGSVPQ-----LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIR 62
P TP G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIR
Sbjct: 55 PAATPDTQNGQVPSGIVPTLQNIVATVNLSARLDLKTIALHARNAEYNPKRFAAVIMRIR 114
Query: 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVK 122
EP+TTAL+F+SGKMV TGAKSE+DSRLA+RKYARIIQKLGF AKF DFKIQN+VGSCD+K
Sbjct: 115 EPKTTALVFASGKMVVTGAKSEDDSRLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIK 174
Query: 123 FPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 175 FPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 222
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 163 KIQNIVGSCDIKFPIRLEGLASRHHTFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 222
Query: 80 GAKSEED 86
GAK E+
Sbjct: 223 GAKVREE 229
>gi|89267100|emb|CAJ41964.1| TF21_MAIZE Transcription initiation factor TFIID-1 [Ustilago
hordei]
gi|388856434|emb|CCF49983.1| probable TATA-box-binding factor TBP [Ustilago hordei]
Length = 239
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 61 GIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 120
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDV+FPIRLEGL +HG
Sbjct: 121 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGV 180
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+SSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 181 YSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 214
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 155 KIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 214
Query: 80 GAKSEED 86
GAK E+
Sbjct: 215 GAKVREE 221
>gi|238878530|gb|EEQ42168.1| TATA-box binding protein [Candida albicans WO-1]
Length = 238
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/154 (84%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKM
Sbjct: 60 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKM 119
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS DVKF IRLEGL HG
Sbjct: 120 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGT 179
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 180 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 154 KIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Query: 80 GAKSEED 86
GAK E+
Sbjct: 214 GAKKREE 220
>gi|429859533|gb|ELA34313.1| RNA polymerase i and iii transcription factor complex component
[Colletotrichum gloeosporioides Nara gc5]
Length = 256
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 143/157 (91%), Gaps = 2/157 (1%)
Query: 16 GGS--VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
GGS P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 75 GGSGLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFAS 134
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL
Sbjct: 135 GKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASR 194
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 HHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 172 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 231
Query: 80 GAKSEED 86
GAK E+
Sbjct: 232 GAKVREE 238
>gi|339961157|pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
gi|339961158|pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 141/155 (90%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 7 SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 66
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 67 MVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHA 126
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 127 AFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 161
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 102 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 161
Query: 80 GAKSEEDS 87
GAK +++
Sbjct: 162 GAKMRDET 169
>gi|154318373|ref|XP_001558505.1| transcription initiation factor TFIID, TATA binding protein
[Botryotinia fuckeliana B05.10]
gi|347837614|emb|CCD52186.1| similar to transcription initiation factor TFIID [Botryotinia
fuckeliana]
Length = 251
Score = 271 bits (693), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 129/156 (82%), Positives = 143/156 (91%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SG
Sbjct: 71 VSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASG 130
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
KMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 131 KMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRH 190
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 191 MNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 226
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 167 KIQNIVGSCDIKFPIRLEGLASRHMNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 226
Query: 80 GAKSEED 86
GAK E+
Sbjct: 227 GAKVREE 233
>gi|389632499|ref|XP_003713902.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|351646235|gb|EHA54095.1| TATA-box-binding protein [Magnaporthe oryzae 70-15]
gi|440473248|gb|ELQ42063.1| TATA-box-binding protein [Magnaporthe oryzae Y34]
gi|440480212|gb|ELQ60887.1| TATA-box-binding protein [Magnaporthe oryzae P131]
Length = 255
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 77 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|343427608|emb|CBQ71135.1| probable TATA-box-binding factor TBP [Sporisorium reilianum SRZ2]
Length = 241
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 63 GIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 122
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDV+FPIRLEGL +HG
Sbjct: 123 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGV 182
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+SSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 183 YSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 216
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 157 KIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 216
Query: 80 GAKSEED 86
GAK E+
Sbjct: 217 GAKVREE 223
>gi|346323634|gb|EGX93232.1| TATA-box binding protein [Cordyceps militaris CM01]
Length = 264
Score = 271 bits (692), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|71012922|ref|XP_758541.1| transcription initiation factor TFIID-1 [Ustilago maydis 521]
gi|46098199|gb|EAK83432.1| TF21_MAIZE Transcription initiation factor TFIID-1 (TATA-box factor
1) (TATA sequence-binding protein 1) (TBP-1) [Ustilago
maydis 521]
Length = 189
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 11 GIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDV+FPIRLEGL +HG
Sbjct: 71 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGV 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+SSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 131 YSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 164
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 105 KIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 164
Query: 80 GAKSEED 86
GAK E+
Sbjct: 165 GAKVREE 171
>gi|297829888|ref|XP_002882826.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
gi|297328666|gb|EFH59085.1| transcription factor IID-1 [Arabidopsis lyrata subsp. lyrata]
Length = 200
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/164 (81%), Positives = 144/164 (87%), Gaps = 4/164 (2%)
Query: 11 TPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
TPVD+ G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+T
Sbjct: 10 TPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKT 69
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMVCTGAKSE S++AARKYARI+QKLGF AKF DFKIQN+VGSCDVKFPIR
Sbjct: 70 TALIFASGKMVCTGAKSEYFSKMAARKYARIVQKLGFSAKFKDFKIQNIVGSCDVKFPIR 129
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 130 LEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 174 GAKMREETYRA 184
>gi|402086781|gb|EJT81679.1| TATA-box-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 255
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 77 GLTPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 136
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 137 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 196
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 197 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 171 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 230
Query: 80 GAKSEED 86
GAK E+
Sbjct: 231 GAKVREE 237
>gi|68490865|ref|XP_710759.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
gi|68490947|ref|XP_710721.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|3334374|sp|O43133.1|TBP_CANAL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2708495|gb|AAC49985.1| TATA-binding protein [Candida albicans]
gi|2708497|gb|AAC49986.1| TATA-binding protein [Candida albicans]
gi|46431958|gb|EAK91473.1| hypothetical protein CaO19.1837 [Candida albicans SC5314]
gi|46432000|gb|EAK91511.1| hypothetical protein CaO19.9395 [Candida albicans SC5314]
Length = 238
Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 129/152 (84%), Positives = 140/152 (92%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKMV
Sbjct: 62 VPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVV 121
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS DVKF IRLEGL HG FS
Sbjct: 122 TGAKSEDDSKLASRKYARIIQKLGFNAKFCDFKIQNIVGSTDVKFAIRLEGLAFAHGTFS 181
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 182 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 154 KIQNIVGSTDVKFAIRLEGLAFAHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 213
Query: 80 GAKSEED 86
GAK E+
Sbjct: 214 GAKKREE 220
>gi|218193429|gb|EEC75856.1| hypothetical protein OsI_12863 [Oryza sativa Indica Group]
Length = 190
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/148 (87%), Positives = 139/148 (93%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+NIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMVCTGAK
Sbjct: 12 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 71
Query: 83 SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
SE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSYEP
Sbjct: 72 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 131
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
ELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 132 ELFPGLIYRMKQPKIVLLIFVSGKIVLT 159
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 100 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 159
Query: 80 GAKSEEDSRLA 90
GAK +++ A
Sbjct: 160 GAKVRDETYTA 170
>gi|400597791|gb|EJP65515.1| transcription factor TFIID [Beauveria bassiana ARSEF 2860]
Length = 253
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 141/154 (91%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G P LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 75 GITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 134
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H
Sbjct: 135 VVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHN 194
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 195 FSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 169 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 228
Query: 80 GAKSEED 86
GAK E+
Sbjct: 229 GAKVREE 235
>gi|48374976|gb|AAT42173.1| TATA sequence-binding protein 2 (TBP-2) [Zea mays]
gi|413933541|gb|AFW68092.1| TATA-binding protein2 [Zea mays]
Length = 392
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/148 (87%), Positives = 139/148 (93%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+NIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMVCTGAK
Sbjct: 173 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 232
Query: 83 SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
SE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSYEP
Sbjct: 233 SEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEP 292
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
ELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 293 ELFPGLIYRMKQPKIVLLIFVSGKIVLT 320
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 261 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 320
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 321 GAKVREETYTA 331
>gi|48374984|gb|AAT42180.1| TATA sequence-binding protein 1 (TBP-1) [Zea mays]
gi|414872054|tpg|DAA50611.1| TPA: TATA sequence-binding protein 1 [Zea mays]
Length = 287
Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/149 (86%), Positives = 140/149 (93%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++NIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMVCTGA
Sbjct: 102 VRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 161
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
KSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSYE
Sbjct: 162 KSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYE 221
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 222 PELFPGLIYRMKQPKIVLLIFVSGKIVLT 250
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 191 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 250
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 251 GAKVREETYTA 261
>gi|443895156|dbj|GAC72502.1| hypothetical protein PANT_7d00127 [Pseudozyma antarctica T-34]
Length = 238
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 143/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL +LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 60 GIVPTLQNIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 119
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DSRLA+RKYARIIQKLGF AKF +FKIQN+VGSCDV+FPIRLEGL +HG
Sbjct: 120 VVTGAKSEDDSRLASRKYARIIQKLGFEAKFSEFKIQNIVGSCDVRFPIRLEGLAYSHGV 179
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+SSYEPELFPGLIYRMVKP++VLLIFVSGK+VLT
Sbjct: 180 YSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 213
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 154 KIQNIVGSCDVRFPIRLEGLAYSHGVYSSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLT 213
Query: 80 GAKSEED 86
GAK E+
Sbjct: 214 GAKVREE 220
>gi|159465587|ref|XP_001691004.1| global transcription factor [Chlamydomonas reinhardtii]
gi|158279690|gb|EDP05450.1| global transcription factor [Chlamydomonas reinhardtii]
Length = 325
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 127/154 (82%), Positives = 142/154 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G PQLQN+V+TVNLG KLDLK+IA+HARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 28 GIKPQLQNVVATVNLGTKLDLKEIAMHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 87
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE+DSR AAR+YA+I+QKLGFPA F +FKIQN+VGSCDVKFPIRLEGL H
Sbjct: 88 VCTGAKSEDDSRTAARRYAKIVQKLGFPATFKEFKIQNIVGSCDVKFPIRLEGLAYAHSL 147
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F+SYEPELFPGLIYRM +P+IVLLIFVSGKVVLT
Sbjct: 148 FASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 181
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H+ A Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 122 KIQNIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLT 181
Query: 80 GAKS 83
GAK+
Sbjct: 182 GAKT 185
>gi|331213275|ref|XP_003319319.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309298309|gb|EFP74900.1| TATA-box-binding protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 209
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 141/156 (90%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
++ G VP LQNIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+
Sbjct: 54 TNVQGIVPTLQNIVATVNLECRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFA 113
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMV TGAKSE+DSRLAARKYARI+QKLGF AKF +FKIQN+VGSCDV+FPIRLEGL
Sbjct: 114 SGKMVVTGAKSEDDSRLAARKYARIVQKLGFEAKFTEFKIQNIVGSCDVRFPIRLEGLAY 173
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
HG FSSYEPELFPGLIYRM K ++VLLIFVSGK+V
Sbjct: 174 NHGHFSSYEPELFPGLIYRMNKQKVVLLIFVSGKIV 209
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+QN+V + +++ + L+ + L H + + Y P+ F +I R+ +P+ LIF SGK+V+T
Sbjct: 63 LQNIVATVNLECRLDLKTIAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVT 120
>gi|1174643|sp|P46272.1|TBP_ACECL RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|2654376|emb|CAA82267.1| TATA box binding protein [Acetabularia peniculus]
Length = 191
Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 128/162 (79%), Positives = 145/162 (89%), Gaps = 4/162 (2%)
Query: 13 VDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
VDM G +P+LQN+VSTVNLGC L+LK+IA+ ARNAEYNPKRFAAVIMRIR+P+TTA
Sbjct: 5 VDMSLHPSGIIPELQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTA 64
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 128
LIF SGKMVCTGAKSE+DSR AARKYA+I+QKLGFPAKF +FKIQN+VGSCDVKFPIR+E
Sbjct: 65 LIFGSGKMVCTGAKSEQDSRTAARKYAKIVQKLGFPAKFTEFKIQNIVGSCDVKFPIRME 124
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L H QF SYEPELFPGLIYRM++P+IVLLIFVSGKVVLT
Sbjct: 125 PLAYQHQQFCSYEPELFPGLIYRMLQPKIVLLIFVSGKVVLT 166
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + ++ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 107 KIQNIVGSCDVKFPIRMEPLAYQHQQFCSYEPELFPGLIYRMLQPKIVLLIFVSGKVVLT 166
Query: 80 GAKSEED 86
GAK +
Sbjct: 167 GAKERTE 173
>gi|322698718|gb|EFY90486.1| TATA binding protein [Metarhizium acridum CQMa 102]
Length = 260
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/178 (74%), Positives = 148/178 (83%), Gaps = 8/178 (4%)
Query: 1 MSPSTPGP-PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK------- 52
++P+TP P G P LQNIV+TVNL C+LDLK IALHARNAEYNPK
Sbjct: 58 VTPATPAATPSATQGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKMLTFDPK 117
Query: 53 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKI 112
RFAAVIMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKI
Sbjct: 118 RFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKI 177
Query: 113 QNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
QN+VGSCD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 178 QNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 176 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Query: 80 GAKSEED 86
GAK E+
Sbjct: 236 GAKVREE 242
>gi|290994623|ref|XP_002679931.1| TATA-box binding protein [Naegleria gruberi]
gi|284093550|gb|EFC47187.1| TATA-box binding protein [Naegleria gruberi]
Length = 318
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 128/167 (76%), Positives = 145/167 (86%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
STP + +D GG +P +QN+VSTVNL C+L LK IALHARNAEYNPKRFAAVIMRIRE
Sbjct: 117 STPSNQVPELDSGGIIPVIQNVVSTVNLACELKLKMIALHARNAEYNPKRFAAVIMRIRE 176
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P+TTALIF SGKMV TGAKSEE+SRLAARKYARIIQKLGF AKF +FKIQN+VGSCDV F
Sbjct: 177 PKTTALIFQSGKMVVTGAKSEEESRLAARKYARIIQKLGFNAKFTEFKIQNIVGSCDVGF 236
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
P+RLEGL H ++SYEPE+FPGLIYRMV P++VLLIFVSGK+VLT
Sbjct: 237 PVRLEGLNCQHHSYASYEPEIFPGLIYRMVDPKVVLLIFVSGKIVLT 283
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++G + L+ + H A Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 224 KIQNIVGSCDVGFPVRLEGLNCQHHSYASYEPEIFPGLIYRMVDPKVVLLIFVSGKIVLT 283
Query: 80 GAKSEE 85
GAK +
Sbjct: 284 GAKHRD 289
>gi|449543430|gb|EMD34406.1| hypothetical protein CERSUDRAFT_97665 [Ceriporiopsis subvermispora
B]
Length = 338
Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/164 (79%), Positives = 145/164 (88%), Gaps = 10/164 (6%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK----------RFAAVIMRIREPRT 66
G VP LQNIV+TVNL C+LDLK IALHARNAEYNPK RFAAVIMRIR+P+T
Sbjct: 137 GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKWPDFRVCALQRFAAVIMRIRDPKT 196
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGSCDVKFPIR
Sbjct: 197 TALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGSCDVKFPIR 256
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 257 LEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 300
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 241 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 300
Query: 80 GAK 82
GAK
Sbjct: 301 GAK 303
>gi|320588959|gb|EFX01427.1| RNA polymerase 1 and 3 transcription factor complex component
[Grosmannia clavigera kw1407]
Length = 268
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 124/150 (82%), Positives = 139/150 (92%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ +NIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKMV TG
Sbjct: 94 RWENIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTG 153
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
AKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H FSSY
Sbjct: 154 AKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSY 213
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 214 EPELFPGLIYRMIKPKIVLLIFVSGKIVLT 243
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 184 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 243
Query: 80 GAKSEED 86
GAK E+
Sbjct: 244 GAKVREE 250
>gi|46128099|ref|XP_388603.1| hypothetical protein FG08427.1 [Gibberella zeae PH-1]
Length = 290
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/177 (75%), Positives = 148/177 (83%), Gaps = 7/177 (3%)
Query: 1 MSPSTP-GPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK------R 53
++P+TP P G P LQNIV+TVNL C+LDLK IALHARNAEYNPK R
Sbjct: 59 VAPATPVATPAATQGPSGITPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVHQTLRR 118
Query: 54 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQ 113
FAAVIMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQ
Sbjct: 119 FAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQ 178
Query: 114 NMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
N+VGSCD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 179 NIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 176 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 235
Query: 80 GAKSEED 86
GAK E+
Sbjct: 236 GAKVREE 242
>gi|384245994|gb|EIE19486.1| TBP-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/158 (81%), Positives = 140/158 (88%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
V G VP LQNIV+TVNL CKLDLK IA ARNAEYNPKRFAAVIMRIR+P+TTAL+F+
Sbjct: 21 VHRSGIVPTLQNIVATVNLDCKLDLKTIAQKARNAEYNPKRFAAVIMRIRDPKTTALVFA 80
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAKSEE +R AARKYA+IIQKL FPA F DFKIQN+VGSCDVKFPIRLEGL
Sbjct: 81 SGKMVCTGAKSEEHARTAARKYAKIIQKLDFPATFKDFKIQNIVGSCDVKFPIRLEGLNY 140
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+HG FSSYEPELFPGLIYRM +P++VLLIFVSGKVVLT
Sbjct: 141 SHGMFSSYEPELFPGLIYRMKEPKVVLLIFVSGKVVLT 178
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ + H + Y P+ F +I R++EP+ LIF SGK+V T
Sbjct: 119 KIQNIVGSCDVKFPIRLEGLNYSHGMFSSYEPELFPGLIYRMKEPKVVLLIFVSGKVVLT 178
Query: 80 GAKSEED 86
G K ED
Sbjct: 179 GGKKRED 185
>gi|309252549|gb|ADO60139.1| TATA-binding protein, partial [Beauveria bassiana]
Length = 159
Score = 265 bits (676), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 125/147 (85%), Positives = 137/147 (93%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
NIV+TVNL C+LDLK IALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMV TGAKS
Sbjct: 1 NIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKS 60
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 143
E+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H FSSYEPE
Sbjct: 61 EDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPE 120
Query: 144 LFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 121 LFPGLIYRMIKPKIVLLIFVSGKIVLT 147
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 88 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 147
Query: 80 GAKSEED 86
GAK E+
Sbjct: 148 GAKVREE 154
>gi|255078440|ref|XP_002502800.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
gi|226518066|gb|ACO64058.1| transcription elongation-nucleosome displacement protein
[Micromonas sp. RCC299]
Length = 240
Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 125/154 (81%), Positives = 136/154 (88%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIV+TVNL CKLDLK IA HARN EYNPKRFAA IMRIR P+TTALIFSSGKM
Sbjct: 36 GIVPQLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFSSGKM 95
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAK+E +R AARKYA++I KLGFPA+F DFKIQNMVGSCDVKFPIRLEGL +HG
Sbjct: 96 VCTGAKTEALAREAARKYAKVISKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGH 155
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F+ YEPELFPGLIYRM P+IVLLIFVSGK+VLT
Sbjct: 156 FAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 189
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H A+Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 130 KIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 189
Query: 80 GAKSEED 86
G K+ +D
Sbjct: 190 GGKNRDD 196
>gi|303283248|ref|XP_003060915.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
gi|226457266|gb|EEH54565.1| transcription elongation-nucleosome displacement protein
[Micromonas pusilla CCMP1545]
Length = 249
Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/158 (79%), Positives = 137/158 (86%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
V G VP LQNIV+TVNL CKLDLK IA HARN EYNPKRFAA IMRIR P+TTALIFS
Sbjct: 37 VHPSGIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRAPKTTALIFS 96
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
SGKMVCTGAK+E +R AARKYA++I KLGFPA+F +FKIQNMVGSCDVKFPIRLEGL
Sbjct: 97 SGKMVCTGAKTEALAREAARKYAKVISKLGFPAQFKEFKIQNMVGSCDVKFPIRLEGLAW 156
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+HG F+ YEPELFPGLIYRMV P+IVLLIFVSGK+VLT
Sbjct: 157 SHGHFAQYEPELFPGLIYRMVVPKIVLLIFVSGKIVLT 194
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H A+Y P+ F +I R+ P+ LIF SGK+V T
Sbjct: 135 KIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMVVPKIVLLIFVSGKIVLT 194
Query: 80 GAKSEED 86
G K ED
Sbjct: 195 GGKKRED 201
>gi|307109595|gb|EFN57833.1| hypothetical protein CHLNCDRAFT_20778 [Chlorella variabilis]
Length = 209
Score = 261 bits (667), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 123/155 (79%), Positives = 137/155 (88%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VPQLQN+V+TVNL CKLDLK IALHARNAEYNPKRFAAVIMRIREP++TALIF SGK
Sbjct: 25 SGIVPQLQNVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRIREPKSTALIFHSGK 84
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTG KSE+++R+A+RKYA+I+QKL + F +FKIQNMVGSCDVKFPIRLEGL TH
Sbjct: 85 MVCTGTKSEQEARIASRKYAKILQKLQYSVSFKEFKIQNMVGSCDVKFPIRLEGLASTHA 144
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F SYEPELFPGLIYRM P+IVLLIFVSGKVVLT
Sbjct: 145 VFCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLT 179
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A HA Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 120 KIQNMVGSCDVKFPIRLEGLASTHAVFCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLT 179
Query: 80 GAKSEED 86
GAK ED
Sbjct: 180 GAKKRED 186
>gi|302508189|ref|XP_003016055.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
gi|291179624|gb|EFE35410.1| hypothetical protein ARB_05452 [Arthroderma benhamiae CBS 112371]
Length = 295
Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 148/195 (75%), Gaps = 31/195 (15%)
Query: 7 GPPMTPV-------DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK------- 52
G P TPV + G VP LQNIV+TVNL C+LDLK IALHARNAEYNPK
Sbjct: 62 GTPATPVATPGAGPGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKVGAGEVA 121
Query: 53 -----------------RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYA 95
RFAAVIMRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYA
Sbjct: 122 CLLFSFHTQVKIYILFVRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 181
Query: 96 RIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKP 155
RIIQKLGF AKF DFKIQN+VGSCD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP
Sbjct: 182 RIIQKLGFNAKFTDFKIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKP 241
Query: 156 RIVLLIFVSGKVVLT 170
+IVLLIFVSGK+VLT
Sbjct: 242 KIVLLIFVSGKIVLT 256
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 197 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 256
Query: 80 GAKSEED 86
GAK E+
Sbjct: 257 GAKVREE 263
>gi|145352509|ref|XP_001420584.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580819|gb|ABO98877.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 226
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 123/154 (79%), Positives = 134/154 (87%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TVNL CKLDLK IA HARN EYNPKRFAA IMRIR P+TTALIFSSGKM
Sbjct: 28 GIVPVLQNIVATVNLDCKLDLKTIAFHARNVEYNPKRFAAAIMRIRNPKTTALIFSSGKM 87
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAK+E +R AARKYA++I KLGFPA+F DFKIQNMVGSCDV+FPIRLEGL HG
Sbjct: 88 VCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVQFPIRLEGLAWQHGH 147
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F+ YEPELFPGLIYRM P+IVLLIFVSGK+VLT
Sbjct: 148 FAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 181
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H A+Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 122 KIQNMVGSCDVQFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 181
Query: 80 GAKSEED 86
G K ED
Sbjct: 182 GGKRRED 188
>gi|330846314|ref|XP_003294984.1| TATA-binding protein [Dictyostelium purpureum]
gi|325074431|gb|EGC28489.1| TATA-binding protein [Dictyostelium purpureum]
Length = 224
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/171 (72%), Positives = 143/171 (83%), Gaps = 4/171 (2%)
Query: 4 STPGPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
ST P VD+ G +P LQNIVSTVN+ +LDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 23 STSSTPAQNVDLSKHPSGIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIM 82
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIREP+TTALIF SGKMVCTGAKSE+ S+ AARKYARIIQKL FPA+F DFKIQN+VGSC
Sbjct: 83 RIREPKTTALIFKSGKMVCTGAKSEDASKYAARKYARIIQKLDFPARFTDFKIQNIVGSC 142
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DVKFPI+LE L H F++YEPE+FPGLIY+M++P++VLLIFVSGK+VLT
Sbjct: 143 DVKFPIKLELLHNAHTSFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLT 193
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 21 QLQNIVST--VNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV + V KL+L A H Y P+ F +I ++ +P+ LIF SGK+V
Sbjct: 134 KIQNIVGSCDVKFPIKLELLHNA-HTSFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVL 192
Query: 79 TGAKSEED 86
TGAK E+
Sbjct: 193 TGAKVREE 200
>gi|320164625|gb|EFW41524.1| Tbpl2 protein [Capsaspora owczarzaki ATCC 30864]
Length = 208
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/152 (80%), Positives = 135/152 (88%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQN+VST NLG LDLK I + ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMVCT
Sbjct: 25 PVLQNVVSTANLGVTLDLKTITMQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCT 84
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSE DSR AARK+A+IIQK+G+ AKFLDFKIQNMV SCDVKFPIRLEGLVL H F+
Sbjct: 85 GAKSEHDSREAARKFAKIIQKVGYKNAKFLDFKIQNMVASCDVKFPIRLEGLVLGHSTFA 144
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPE+FPGL+Y MV P++VLLIFVSGKVVLT
Sbjct: 145 SYEPEIFPGLVYHMVSPKVVLLIFVSGKVVLT 176
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ + L H+ A Y P+ F ++ + P+ LIF SGK+V T
Sbjct: 117 KIQNMVASCDVKFPIRLEGLVLGHSTFASYEPEIFPGLVYHMVSPKVVLLIFVSGKVVLT 176
Query: 80 GAKSEED 86
GAK +E
Sbjct: 177 GAKEKEQ 183
>gi|428176634|gb|EKX45518.1| hypothetical protein GUITHDRAFT_152740 [Guillardia theta CCMP2712]
Length = 212
Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/161 (75%), Positives = 138/161 (85%), Gaps = 1/161 (0%)
Query: 11 TPVDM-GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
+DM G P LQNIV+TVNL C L+LK I L ARNAEYNPKRFAAVIMRIREP+TTAL
Sbjct: 18 NDLDMTNGITPSLQNIVATVNLNCSLNLKTITLQARNAEYNPKRFAAVIMRIREPKTTAL 77
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 129
IF+SGKMVCTGAKSEE +RLA+RK+ARIIQKLGF AKF +FKIQN+VGSCDV+FPIRLE
Sbjct: 78 IFASGKMVCTGAKSEESARLASRKFARIIQKLGFSAKFTEFKIQNIVGSCDVRFPIRLEK 137
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L H + SYEPELFPGLIYRM+ P++VLLIFVSGK+VLT
Sbjct: 138 LAYAHQNYCSYEPELFPGLIYRMLVPKVVLLIFVSGKIVLT 178
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+K+A H Y P+ F +I R+ P+ LIF SGK+V T
Sbjct: 119 KIQNIVGSCDVRFPIRLEKLAYAHQNYCSYEPELFPGLIYRMLVPKVVLLIFVSGKIVLT 178
Query: 80 GAKSEEDSRLAAR 92
GAK++ D +A R
Sbjct: 179 GAKNKRDIDIAFR 191
>gi|242039091|ref|XP_002466940.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
gi|241920794|gb|EER93938.1| hypothetical protein SORBIDRAFT_01g017130 [Sorghum bicolor]
Length = 225
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/155 (79%), Positives = 141/155 (90%), Gaps = 1/155 (0%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIVSTVNLGCKLDL++IA ARNAEYNPKRFAAVI+RIR+P+TTAL+F+SGKM
Sbjct: 41 GFVPTLQNIVSTVNLGCKLDLQQIASGARNAEYNPKRFAAVIVRIRDPKTTALVFASGKM 100
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
VCTGAKSEE SRLA RK+ARI+ KLGF A+F DFKIQN+VGSCDVKFPIRLEGL L G
Sbjct: 101 VCTGAKSEEHSRLAGRKFARIVHKLGFQSARFKDFKIQNIVGSCDVKFPIRLEGLALASG 160
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F++YEPE+FPGLIYRMV+P+IV+LIFVSGK+VLT
Sbjct: 161 TFANYEPEIFPGLIYRMVEPKIVILIFVSGKIVLT 195
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +AL + A Y P+ F +I R+ EP+ LIF SGK+V T
Sbjct: 136 KIQNIVGSCDVKFPIRLEGLALASGTFANYEPEIFPGLIYRMVEPKIVILIFVSGKIVLT 195
Query: 80 GAKSEED 86
GAK E+
Sbjct: 196 GAKVREE 202
>gi|66819952|ref|XP_643633.1| TATA-binding protein [Dictyostelium discoideum AX4]
gi|166210407|sp|P26355.2|TBP_DICDI RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|60471603|gb|EAL69559.1| TATA-binding protein [Dictyostelium discoideum AX4]
Length = 205
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/155 (77%), Positives = 137/155 (88%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G +P LQNIVSTVN+ +LDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF SGK
Sbjct: 21 SGIIPTLQNIVSTVNMATELDLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGK 80
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ SR AARKYARIIQKL FPA+F DFKIQN+VGSCDVKFPI+LE L H
Sbjct: 81 MVCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHT 140
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F++YEPE+FPGLIY+M++P++VLLIFVSGK+VLT
Sbjct: 141 SFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLT 175
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 21 QLQNIVST--VNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV + V KL+L A H Y P+ F +I ++ +P+ LIF SGK+V
Sbjct: 116 KIQNIVGSCDVKFPIKLELLHNA-HTSFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVL 174
Query: 79 TGAKSEED 86
TGAK E+
Sbjct: 175 TGAKVREE 182
>gi|19074223|ref|NP_584829.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|19068865|emb|CAD25333.1| TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1 [Encephalitozoon
cuniculi GB-M1]
gi|449329027|gb|AGE95302.1| transcription initiation factor tfIId [Encephalitozoon cuniculi]
Length = 198
Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 17 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 77 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 114 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK +D
Sbjct: 174 GAKVRDD 180
>gi|303389118|ref|XP_003072792.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
gi|303301934|gb|ADM11432.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon intestinalis ATCC 50506]
Length = 198
Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 17 NSSGIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 77 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 114 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK +D
Sbjct: 174 GAKVRDD 180
>gi|413933837|gb|AFW68388.1| hypothetical protein ZEAMMB73_647229, partial [Zea mays]
Length = 189
Score = 254 bits (649), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 116/154 (75%), Positives = 138/154 (89%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIVSTVNL CK+DL+ +A ARNAEYNP+RF A IMRIREP+TTALIF++GKM
Sbjct: 12 GIVPNLQNIVSTVNLDCKVDLQHVANSARNAEYNPRRFGAAIMRIREPKTTALIFATGKM 71
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSE DSRLAARK+ARI+QKLGFPA+F DFK+QN+VGSCD+KFPIRLEGL L G
Sbjct: 72 VCTGAKSEADSRLAARKFARIVQKLGFPARFKDFKVQNIVGSCDLKFPIRLEGLALASGL 131
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++YEPE+FPGL+YRMV P++V+L+FVSGK+VLT
Sbjct: 132 SATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLT 165
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHAR-NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + +L + L+ +AL + +A Y P+ F ++ R+ +P+ L+F SGK+V T
Sbjct: 106 KVQNIVGSCDLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLT 165
Query: 80 GAKSEED 86
GAK +E+
Sbjct: 166 GAKVQEE 172
>gi|396081293|gb|AFN82911.1| eukaryotic TATA box binding transcription initiation factor TFIID-1
[Encephalitozoon romaleae SJ-2008]
Length = 198
Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/157 (75%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 17 NRSGIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ S++AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 77 GKMVITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 114 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK +D
Sbjct: 174 GAKVRDD 180
>gi|339961266|pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961267|pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
gi|339961268|pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
gi|339961269|pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEED 86
GAK +D
Sbjct: 194 GAKVRDD 200
>gi|259090139|pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
gi|259090140|pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEED 86
GAK +D
Sbjct: 194 GAKVRDD 200
>gi|401826152|ref|XP_003887170.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
gi|392998328|gb|AFM98189.1| TATA-box binding protein [Encephalitozoon hellem ATCC 50504]
Length = 198
Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/157 (75%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 17 NRSGIIPTLQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 76
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ S++AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 77 GKMVITGAKSEKSSKMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 136
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 137 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 114 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 173
Query: 80 GAKSEED 86
GAK +D
Sbjct: 174 GAKVRDD 180
>gi|328870425|gb|EGG18799.1| TATA-binding protein [Dictyostelium fasciculatum]
Length = 236
Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/180 (71%), Positives = 146/180 (81%), Gaps = 13/180 (7%)
Query: 4 STPGPPMTP---------VDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYN 50
S P PP TP +D+ G VP LQNIVSTVN+G +L+LK IAL A NAEYN
Sbjct: 20 SLPLPPTTPSISTQQASTIDLVKHPSGIVPVLQNIVSTVNMGTELNLKTIALGALNAEYN 79
Query: 51 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDF 110
PKRFAAVIMRIR+P+TTALIF SGKMVCTGAKSEE S+LAARKYARIIQKL FPA F DF
Sbjct: 80 PKRFAAVIMRIRDPKTTALIFKSGKMVCTGAKSEEASKLAARKYARIIQKLDFPAIFKDF 139
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KIQN+VGSCDVKFPIRLE L H F++YEPE+FPGLIY+M++P++VLLIFVSGK+VLT
Sbjct: 140 KIQNIVGSCDVKFPIRLENLNNAHKVFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLT 199
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ + H Y P+ F +I ++ +P+ LIF SGK+V T
Sbjct: 140 KIQNIVGSCDVKFPIRLENLNNAHKVFTNYEPEIFPGLIYKMIQPKVVLLIFVSGKIVLT 199
Query: 80 GAKSEED 86
GAK E+
Sbjct: 200 GAKVREE 206
>gi|255552716|ref|XP_002517401.1| TATA-box binding protein, putative [Ricinus communis]
gi|223543412|gb|EEF44943.1| TATA-box binding protein, putative [Ricinus communis]
Length = 190
Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/163 (73%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
Query: 9 PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
P P D P LQNIVSTVNL CKLDLK IALH+RN+EYNP+RF+AVIMR+R+P+TTA
Sbjct: 4 PSIPSDHLIPTPILQNIVSTVNLDCKLDLKDIALHSRNSEYNPRRFSAVIMRLRDPKTTA 63
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 128
L+F+SGKMVCTGAKSE S++AARKYARI+QKLGFPAKF DFKIQN+V SCDV F IRLE
Sbjct: 64 LLFASGKMVCTGAKSEAQSKIAARKYARIVQKLGFPAKFKDFKIQNIVASCDVNFRIRLE 123
Query: 129 GLVLT-HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V + H FSSYEPE+FPG+IYRM KP+IV+LIFVSGK+V+T
Sbjct: 124 KFVYSKHAAFSSYEPEIFPGMIYRMTKPKIVMLIFVSGKIVIT 166
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ ++ ++ L+K HA + Y P+ F +I R+ +P+ LIF SGK+V
Sbjct: 106 KIQNIVASCDVNFRIRLEKFVYSKHAAFSSYEPEIFPGMIYRMTKPKIVMLIFVSGKIVI 165
Query: 79 TGAKSEEDSRLA 90
TGAK+ ED+ A
Sbjct: 166 TGAKTREDTYAA 177
>gi|429962646|gb|ELA42190.1| TATA-box-binding protein [Vittaforma corneae ATCC 50505]
Length = 197
Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/166 (72%), Positives = 140/166 (84%)
Query: 5 TPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP 64
TP P T + G P LQN+V+TVNL CKLDL+ IAL ARNAEYNPKRFAAVIMRIR+P
Sbjct: 7 TPEPKQTHLQRTGITPVLQNVVATVNLNCKLDLRSIALRARNAEYNPKRFAAVIMRIRDP 66
Query: 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFP 124
+TTALIF+SGKMV TGAKSE+ S++A+++YA+II KLGF A+F DFKIQN+V SCD+KF
Sbjct: 67 KTTALIFASGKMVVTGAKSEKASKMASQRYAKIISKLGFNAQFTDFKIQNIVSSCDLKFC 126
Query: 125 IRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
I+LEGL H F SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 127 IKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 172
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ +L + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 113 KIQNIVSSCDLKFCIKLEGLAYAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 172
Query: 80 GAKSEED 86
GAK ED
Sbjct: 173 GAKVRED 179
>gi|300701392|ref|XP_002994966.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
gi|239603310|gb|EEQ81295.1| hypothetical protein NCER_102344 [Nosema ceranae BRL01]
Length = 199
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/160 (74%), Positives = 136/160 (85%)
Query: 11 TPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 70
T + G P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALI
Sbjct: 15 TVENRSGITPILQNVVATVNLNCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALI 74
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
F+SGK+V TGAKSE+ S+LAA++Y++II KLGF A F DFKIQN+V SCD KF IRLEGL
Sbjct: 75 FASGKVVITGAKSEKQSKLAAQRYSKIINKLGFNADFNDFKIQNIVSSCDTKFSIRLEGL 134
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 135 AYSHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 174
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ + + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 115 KIQNIVSSCDTKFSIRLEGLAYSHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 174
Query: 80 GAKSEED 86
GAK +D
Sbjct: 175 GAKVRDD 181
>gi|6063008|gb|AAF03091.1|AF144035_1 transcription initiation factor TFIID [Antonospora locustae]
Length = 259
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 133/152 (87%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKMV
Sbjct: 83 LPALQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVV 142
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE+ S+LAA+K++RII KLGF KF DFKIQN+V SCD +F IRLEGL H F
Sbjct: 143 TGAKSEQTSKLAAQKFSRIIHKLGFNTKFADFKIQNIVSSCDTQFSIRLEGLAFAHSNFC 202
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 203 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ + + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 175 KIQNIVSSCDTQFSIRLEGLAFAHSNFCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 234
Query: 80 GAKSEED 86
GAK ++
Sbjct: 235 GAKMRDE 241
>gi|167899|gb|AAA33256.1| TFIID [Dictyostelium discoideum]
Length = 205
Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/155 (76%), Positives = 136/155 (87%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G +P LQNIVSTVN+ +L LK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF SGK
Sbjct: 21 SGIIPTLQNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGK 80
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ SR AARKYARIIQKL FPA+F DFKIQN+VGSCDVKFPI+LE L H
Sbjct: 81 MVCTGAKSEDASRFAARKYARIIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHNAHT 140
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
F++YEPE+FPGLIY+M++P+++LLIFVSGK+VLT
Sbjct: 141 SFTNYEPEIFPGLIYKMIQPKVLLLIFVSGKIVLT 175
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 21 QLQNIVST--VNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV + V KL+L A H Y P+ F +I ++ +P+ LIF SGK+V
Sbjct: 116 KIQNIVGSCDVKFPIKLELLHNA-HTSFTNYEPEIFPGLIYKMIQPKVLLLIFVSGKIVL 174
Query: 79 TGAKSEE 85
TGAK E
Sbjct: 175 TGAKVRE 181
>gi|387592277|gb|EIJ87301.1| TATA-box binding protein [Nematocida parisii ERTm3]
gi|387596323|gb|EIJ93945.1| TATA-box binding protein [Nematocida parisii ERTm1]
Length = 189
Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/154 (76%), Positives = 138/154 (89%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP +QNIV+TVNL C+LDLK IAL ARNAEYNPKRFAAVI+RIR+PRTTALIF+SGKM
Sbjct: 11 GLVPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRKPRTTALIFASGKM 70
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGA+SEEDS++AA+KY+ II++LG+P +F +FKIQN+V SCD KF IRLEGLV H
Sbjct: 71 VVTGARSEEDSKIAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKFSIRLEGLVFGHSN 130
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+SSYEPELFPGLIYRMVKP+IVLL+FVSGKVVLT
Sbjct: 131 YSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLT 164
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ + + L+ + H+ + Y P+ F +I R+ +P+ L+F SGK+V T
Sbjct: 105 KIQNIVSSCDTKFSIRLEGLVFGHSNYSSYEPELFPGLIYRMVKPKIVLLVFVSGKVVLT 164
Query: 80 GAKSEED 86
GAK E+
Sbjct: 165 GAKHREE 171
>gi|196001097|ref|XP_002110416.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
gi|190586367|gb|EDV26420.1| hypothetical protein TRIADDRAFT_22173 [Trichoplax adhaerens]
Length = 220
Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/152 (77%), Positives = 135/152 (88%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
VPQ+QN+VST NL C L L+ IA ARNAEYNPKRFAA+IMRIR+P+TTALIFSSGK+VC
Sbjct: 32 VPQIQNVVSTFNLKCSLKLRDIASKARNAEYNPKRFAALIMRIRDPKTTALIFSSGKIVC 91
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKS E SRLAARK+ARIIQKLG+PAKF F+IQN+VGSCDVKF I LEGLV+TH F
Sbjct: 92 AGAKSPELSRLAARKHARIIQKLGYPAKFTQFQIQNIVGSCDVKFHISLEGLVVTHSHFC 151
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMV+P++VLL+FVSGK+VLT
Sbjct: 152 SYEPELFPGLIYRMVQPKVVLLVFVSGKIVLT 183
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
Q+QNIV + ++ + L+ + + H+ Y P+ F +I R+ +P+ L+F SGK+V T
Sbjct: 124 QIQNIVGSCDVKFHISLEGLVVTHSHFCSYEPELFPGLIYRMVQPKVVLLVFVSGKIVLT 183
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAK 106
GAK EED A +K +++ P K
Sbjct: 184 GAKVEEDILEAFKKIYPMLRAFMKPQK 210
>gi|429964398|gb|ELA46396.1| TATA-box-binding protein [Vavraia culicis 'floridensis']
Length = 201
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/151 (77%), Positives = 131/151 (86%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQN+V+TVNL C+L+LK IAL ARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKMV T
Sbjct: 26 PTLQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVIT 85
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKSE+ SR+AA+KYARII KLGF +F DFKIQN+V SCD KF IRLEGL H F S
Sbjct: 86 GAKSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFCS 145
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGLIYRMV P+IVLLIFVSGK+VLT
Sbjct: 146 YEPELFPGLIYRMVNPKIVLLIFVSGKIVLT 176
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ + + L+ +A H+ Y P+ F +I R+ P+ LIF SGK+V T
Sbjct: 117 KIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEPELFPGLIYRMVNPKIVLLIFVSGKIVLT 176
Query: 80 GAKSEED 86
GAK ++
Sbjct: 177 GAKVRDE 183
>gi|169806112|ref|XP_001827801.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
gi|161779087|gb|EDQ31113.1| transcription initiation factor TFIID [Enterocytozoon bieneusi
H348]
Length = 233
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/152 (75%), Positives = 134/152 (88%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
VP LQN+V+TVNL CKLDLK IALHARNAEYNPK+FAAVIMRIREP+TTALIF+SGKMV
Sbjct: 57 VPILQNVVATVNLNCKLDLKSIALHARNAEYNPKKFAAVIMRIREPKTTALIFASGKMVV 116
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE+ SR+A+++Y++IIQKLGF F F +QN+V SCD+KFPI+LEGL H +
Sbjct: 117 TGAKSEKASRIASQRYSKIIQKLGFSVYFDSFTVQNIVSSCDLKFPIKLEGLAYAHSNYC 176
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 177 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 208
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QNIVS+ +L + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V TG
Sbjct: 150 VQNIVSSCDLKFPIKLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 209
Query: 81 AKSEED 86
AK ED
Sbjct: 210 AKKRED 215
>gi|399949933|gb|AFP65589.1| TATA binding protein of transcription factor IID [Chroomonas
mesostigmatica CCMP1168]
Length = 262
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 139/168 (82%), Gaps = 3/168 (1%)
Query: 6 PGPPMTPVDMGGS--VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
P P + M G+ +P +QN+VSTVNLG +LDLK+IAL RNAEYNP+RFAAV+MRIR+
Sbjct: 70 PSPLVALRIMKGNQIIPDIQNVVSTVNLGIQLDLKRIALKTRNAEYNPRRFAAVVMRIRD 129
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVK 122
P+TTALIFSSGKMV TGAKSEE ++L +KYARIIQK+G+ KFLDFKIQN+V SCD K
Sbjct: 130 PKTTALIFSSGKMVITGAKSEETAKLGGKKYARIIQKIGYGHIKFLDFKIQNIVASCDTK 189
Query: 123 FPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPIRLE L H QF SYEPELFPGLIYRM+ P++VLLIFVSGK+VLT
Sbjct: 190 FPIRLESLAHAHNQFCSYEPELFPGLIYRMISPKVVLLIFVSGKLVLT 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN--AEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ + + L+ +A HA N Y P+ F +I R+ P+ LIF SGK+V
Sbjct: 178 KIQNIVASCDTKFPIRLESLA-HAHNQFCSYEPELFPGLIYRMISPKVVLLIFVSGKLVL 236
Query: 79 TGAKSEED 86
TGAK D
Sbjct: 237 TGAKQRND 244
>gi|440494309|gb|ELQ76708.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Trachipleistophora hominis]
Length = 234
Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/152 (76%), Positives = 131/152 (86%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
P LQN+V+TVNL C+L+LK IAL ARNAEYNPKRFAAVIMRIR+P+TTALIF+SGKMV
Sbjct: 58 TPTLQNVVATVNLECRLELKVIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVI 117
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE+ SR+AA+KYARII KLGF +F DFKIQN+V SCD KF IRLEGL H F
Sbjct: 118 TGAKSEQASRIAAKKYARIIHKLGFNTQFSDFKIQNIVSSCDTKFNIRLEGLAYAHSNFC 177
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMV P+IVLLIFVSGK+VLT
Sbjct: 178 SYEPELFPGLIYRMVNPKIVLLIFVSGKIVLT 209
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ + + L+ +A H+ Y P+ F +I R+ P+ LIF SGK+V T
Sbjct: 150 KIQNIVSSCDTKFNIRLEGLAYAHSNFCSYEPELFPGLIYRMVNPKIVLLIFVSGKIVLT 209
Query: 80 GAKSEED 86
GAK ++
Sbjct: 210 GAKVRDE 216
>gi|162605642|ref|XP_001713336.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162605926|ref|XP_001713478.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|162606298|ref|XP_001713179.1| TATA binding protein of transcription factor IID [Guillardia theta]
gi|6690140|gb|AAF24005.1|AF083031_2 TATA binding protein of transcription factor IID [Guillardia theta]
gi|13794403|gb|AAK39780.1|AF083031_144 TATA binding protein of transcription factor IID [Guillardia theta]
gi|4583657|emb|CAB40395.1| TATA binding protein of transcription factor IID [Guillardia theta]
Length = 249
Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/173 (68%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Query: 3 PSTPGP----PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
PST P V P +QN+VSTV+LG +LDLK+IAL ARNAEYNP+RFAAVI
Sbjct: 52 PSTEAQSSVVPFRAVRANEITPNIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVI 111
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVG 117
MRIR+P+TTALIFSSGKMV TGAKSE+ +R+A +KYARIIQ+LG+ AKF+DF+IQN+V
Sbjct: 112 MRIRDPKTTALIFSSGKMVVTGAKSEDSARVACKKYARIIQRLGYGHAKFIDFRIQNIVA 171
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SCDV+FPIRLE L H QF SYEPELFPGLIYRM+ P++VLLIFVSGK+VLT
Sbjct: 172 SCDVRFPIRLESLAHAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVLT 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN--AEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ ++ + L+ +A HA N Y P+ F +I R+ P+ LIF SGK+V
Sbjct: 165 RIQNIVASCDVRFPIRLESLA-HAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVL 223
Query: 79 TGAKSEED 86
TGAK D
Sbjct: 224 TGAKQRND 231
>gi|431904621|gb|ELK10003.1| TATA-box-binding protein [Pteropus alecto]
Length = 193
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/140 (86%), Positives = 125/140 (89%), Gaps = 4/140 (2%)
Query: 2 SPSTPGPPMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
SP TP P+TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAV
Sbjct: 42 SPVTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAV 101
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
IMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG
Sbjct: 102 IMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 161
Query: 118 SCDVKFPIRLEGLVLTHGQF 137
SCDVKFPIRLEGLVLTH QF
Sbjct: 162 SCDVKFPIRLEGLVLTHQQF 181
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 65 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 123
>gi|118352110|ref|XP_001009328.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89291095|gb|EAR89083.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 246
Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 131/151 (86%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P+LQNIVSTVNL KLDLK+IAL ARNAEYNPKRFAAVIMR+R+P+TTALIF+SGKMVCT
Sbjct: 51 PKLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCT 110
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAK+EEDS AARKYA+IIQK+GFP +F DFKIQN+VGS DVKFPI L+ L H +F
Sbjct: 111 GAKTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQ 170
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGLIYR +IVLLIFVSGK+VLT
Sbjct: 171 YEPEIFPGLIYREFNTKIVLLIFVSGKIVLT 201
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ ++L + H + +Y P+ F +I R + LIF SGK+V T
Sbjct: 142 KIQNIVGSTDVKFPINLDHLEQDHKKFVQYEPEIFPGLIYREFNTKIVLLIFVSGKIVLT 201
Query: 80 GAKSEEDSRLAARK 93
GAK+ E+ A +K
Sbjct: 202 GAKTRENINKAFQK 215
>gi|160331843|ref|XP_001712628.1| tfIID [Hemiselmis andersenii]
gi|159766077|gb|ABW98303.1| tfIID [Hemiselmis andersenii]
Length = 267
Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/170 (70%), Positives = 140/170 (82%), Gaps = 3/170 (1%)
Query: 4 STPGP--PMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
S PG P V +P +QN+VSTV+LG +LDLK+IAL ARNAEYNP+RFAAVIMRI
Sbjct: 73 SFPGSLVPFKLVKGNEIIPDVQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRI 132
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCD 120
R+P+TTALIFSSGKMV TGAKSEE ++L +KYARIIQ+LG+ KFLDF+IQN+V SCD
Sbjct: 133 RDPKTTALIFSSGKMVITGAKSEEAAKLGCKKYARIIQRLGYGHVKFLDFRIQNIVASCD 192
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLE L H QF SYEPELFPGLIYRM+ P++VLLIFVSGK+VLT
Sbjct: 193 VKFPIRLESLAHAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVLT 242
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN--AEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ ++ + L+ +A HA N Y P+ F +I R+ P+ LIF SGK+V
Sbjct: 183 RIQNIVASCDVKFPIRLESLA-HAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVL 241
Query: 79 TGAKSEED 86
TGAK +D
Sbjct: 242 TGAKERKD 249
>gi|330038400|ref|XP_003239586.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
gi|327206510|gb|AEA38688.1| TATA binding protein of transcription factor IID [Cryptomonas
paramecium]
Length = 231
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/166 (68%), Positives = 142/166 (85%), Gaps = 4/166 (2%)
Query: 9 PMTPVDMGGS---VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPR 65
P+T ++ + +P +QN+V+TVNLG +LDLK+IA+ ARNAE+NP+RFAAVIMRIREP+
Sbjct: 41 PVTTFELAKANEVIPDIQNVVATVNLGIQLDLKRIAIKARNAEFNPRRFAAVIMRIREPK 100
Query: 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFP 124
TTALIFSSGK+V TGAKSE+ SR+A +KY RIIQ+LG+ AKFL+F+IQN+V SCDV+FP
Sbjct: 101 TTALIFSSGKIVVTGAKSEDTSRIACKKYTRIIQRLGYGHAKFLNFRIQNIVASCDVRFP 160
Query: 125 IRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IRLE L H QF SYEPELFPGLIYRM+ P++VLLIFVSGK+VLT
Sbjct: 161 IRLESLAHAHNQFCSYEPELFPGLIYRMINPKVVLLIFVSGKLVLT 206
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN--AEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ ++ + L+ +A HA N Y P+ F +I R+ P+ LIF SGK+V
Sbjct: 147 RIQNIVASCDVRFPIRLESLA-HAHNQFCSYEPELFPGLIYRMINPKVVLLIFVSGKLVL 205
Query: 79 TGAKSEED 86
TGAK +D
Sbjct: 206 TGAKQRKD 213
>gi|3122945|sp|Q27850.1|TBP_TETTH RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; Short=TBP; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|349811|gb|AAC14470.1| TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/151 (75%), Positives = 130/151 (86%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P+LQNIVSTVNL KLDLK+IAL ARNAEYNPKRFAAVIMR+R+P+TTALIF+SGKMVCT
Sbjct: 51 PKLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCT 110
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAK+EEDS AARKYA+IIQK+GFP +F DFKIQN+VGS DVKFPI L+ L H +F
Sbjct: 111 GAKTEEDSNRAARKYAKIIQKIGFPVQFKDFKIQNIVGSTDVKFPINLDHLEQDHKKFVQ 170
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPG IYR +IVLLIFVSGK+VLT
Sbjct: 171 YEPEIFPGKIYREFNTKIVLLIFVSGKIVLT 201
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ ++L + H + +Y P+ F I R + LIF SGK+V T
Sbjct: 142 KIQNIVGSTDVKFPINLDHLEQDHKKFVQYEPEIFPGKIYREFNTKIVLLIFVSGKIVLT 201
Query: 80 GAKSEEDSRLAARK 93
GAK+ E+ A +K
Sbjct: 202 GAKTRENINKAFQK 215
>gi|402470285|gb|EJW04618.1| TATA-box-binding protein [Edhazardia aedis USNM 41457]
Length = 198
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 116/155 (74%), Positives = 130/155 (83%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G P +QN+V+TVNLG L L+ IA RNAEYNPKRFAAVIMRIREP+TTALIFSSGK
Sbjct: 19 SGIFPIIQNVVATVNLGHHLTLQDIAYKTRNAEYNPKRFAAVIMRIREPKTTALIFSSGK 78
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE S AARK+ARIIQK GFPAKF D+KIQN+V SCD+KF +RLEGL HG
Sbjct: 79 MVVTGAKSEASSMFAARKFARIIQKAGFPAKFKDYKIQNIVSSCDIKFNVRLEGLAFMHG 138
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ SYEPELFPGLIYRMVKP+IVLLIFVSGK+V+T
Sbjct: 139 PYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVIT 173
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A +H Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 114 KIQNIVSSCDIKFNVRLEGLAFMHGPYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEED 86
GAK+ E+
Sbjct: 174 GAKAREE 180
>gi|424513557|emb|CCO66179.1| predicted protein [Bathycoccus prasinos]
Length = 289
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/202 (62%), Positives = 140/202 (69%), Gaps = 33/202 (16%)
Query: 2 SPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK--------- 52
+ +T G V G VP LQNIV+TVNL CKLDLK IA HARN EYNPK
Sbjct: 30 TETTDGGIDRSVHPSGIVPTLQNIVATVNLDCKLDLKTIAFHARNVEYNPKVCRAVGGKE 89
Query: 53 ------------------------RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSR 88
RFAA IMRIR P+TTALIF+SGKMVCTGAK+E +R
Sbjct: 90 IVKTDAFLHHSFHQTFRCALLNKQRFAAAIMRIRNPKTTALIFASGKMVCTGAKTEALAR 149
Query: 89 LAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGL 148
AARKYA++I KLGFPA+F DFKIQNMVGSCDVKFPIRLEGL +HG F+ YEPELFPGL
Sbjct: 150 EAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGL 209
Query: 149 IYRMVKPRIVLLIFVSGKVVLT 170
IYRM P+IVLLIFVSGK+VLT
Sbjct: 210 IYRMQMPKIVLLIFVSGKIVLT 231
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H A+Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 172 KIQNMVGSCDVKFPIRLEGLAWSHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 231
Query: 80 GAKSEED 86
G K ED
Sbjct: 232 GGKRRED 238
>gi|351694348|gb|EHA97266.1| TATA box-binding protein-like protein 2 [Heterocephalus glaber]
Length = 354
Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 117/133 (87%), Positives = 122/133 (91%), Gaps = 4/133 (3%)
Query: 9 PMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP 64
PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIREP
Sbjct: 193 PMTPVTPALERSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREP 252
Query: 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFP 124
RTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDV+F
Sbjct: 253 RTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVRFS 312
Query: 125 IRLEGLVLTHGQF 137
IRLEGLVLTH QF
Sbjct: 313 IRLEGLVLTHQQF 325
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 209 QLQNIVSTVNLACKLDLKKIAL-HAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 267
>gi|255579166|ref|XP_002530430.1| TATA-box binding protein, putative [Ricinus communis]
gi|223530038|gb|EEF31961.1| TATA-box binding protein, putative [Ricinus communis]
Length = 193
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/152 (73%), Positives = 134/152 (88%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNI STVNL CKLDLK+IALH+ N+EY+PKRF+AV MRIR P+TTALIF+SG++VCT
Sbjct: 18 PVLQNIASTVNLDCKLDLKRIALHSLNSEYDPKRFSAVTMRIRHPQTTALIFASGRVVCT 77
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT-HGQFS 138
GAK+EEDS+LA RK+ARI+QKLGFPAKF DFKIQN+V SCD+KFP+RLE + T H FS
Sbjct: 78 GAKTEEDSKLAMRKFARIVQKLGFPAKFKDFKIQNIVASCDMKFPLRLEKFIYTKHAAFS 137
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEP++FPGLIYRM + RI++LIFVSGKVV+T
Sbjct: 138 RYEPDVFPGLIYRMKESRIIMLIFVSGKVVIT 169
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ ++ L L+K HA + Y P F +I R++E R LIF SGK+V
Sbjct: 109 KIQNIVASCDMKFPLRLEKFIYTKHAAFSRYEPDVFPGLIYRMKESRIIMLIFVSGKVVI 168
Query: 79 TGAKSEEDS 87
TGAK +++
Sbjct: 169 TGAKKTDEA 177
>gi|414864598|tpg|DAA43155.1| TPA: hypothetical protein ZEAMMB73_034825 [Zea mays]
Length = 212
Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/176 (65%), Positives = 137/176 (77%), Gaps = 21/176 (11%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPK---------------------RF 54
G VP LQNIVSTVNL CK+DL+ +A ARNAEYNP+ RF
Sbjct: 11 SGIVPILQNIVSTVNLECKVDLQHVANSARNAEYNPRVCIIISAAAALFFFFFAWNYIRF 70
Query: 55 AAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQN 114
AA IMRIREP+TT LIF+SGKMVCTGAKSE DSRLAARK+ARI+QKLG PA+F DFK+QN
Sbjct: 71 AAAIMRIREPKTTTLIFASGKMVCTGAKSEADSRLAARKFARIVQKLGSPARFKDFKVQN 130
Query: 115 MVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+VGSCD+KFPIRLEGL L G ++YEPE+FPGL+YRMV P++V+L+FVSGK+VLT
Sbjct: 131 IVGSCDLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLT 186
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + +L + L+ +AL + +A Y P+ F ++ R+ +P+ L+F SGK+V T
Sbjct: 127 KVQNIVGSCDLKFPIRLEGLALASGLSATYEPEIFPGLVYRMVDPKVVILVFVSGKIVLT 186
Query: 80 GAKSEED 86
GAK E+
Sbjct: 187 GAKVREE 193
>gi|66498987|ref|XP_394229.2| PREDICTED: TATA-box-binding protein-like [Apis mellifera]
Length = 241
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/172 (68%), Positives = 136/172 (79%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P + PMTP + V P LQN+VSTVNLG +L L I RN+EYNP RF +I
Sbjct: 45 VNPQSLISPMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLI 104
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIR PR TALIF SGK+VCTGA+SEEDS LA RK+ARIIQKLGF AKF +FKIQN+V +
Sbjct: 105 MRIRNPRATALIFHSGKIVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVAT 164
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPI+LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GKVVLT
Sbjct: 165 CDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKVVLT 216
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + +H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 157 KIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKVVLT 216
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 217 GAKNRTE 223
>gi|380013265|ref|XP_003690685.1| PREDICTED: TATA-box-binding protein-like [Apis florea]
Length = 241
Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 117/172 (68%), Positives = 136/172 (79%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P + PMTP + V P LQN+VSTVNLG +L L I RN+EYNP RF +I
Sbjct: 45 VNPQSLISPMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLI 104
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIR PR TALIF SGK+VCTGA+SEEDS LA RK+ARIIQKLGF AKF +FKIQN+V +
Sbjct: 105 MRIRNPRATALIFHSGKIVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVAT 164
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPI+LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GKVVLT
Sbjct: 165 CDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKVVLT 216
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + +H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 157 KIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKVVLT 216
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 217 GAKNRTE 223
>gi|313226921|emb|CBY22066.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/129 (87%), Positives = 121/129 (93%)
Query: 42 LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL 101
+ ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR+IQKL
Sbjct: 1 MRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEKSRLAARKYARVIQKL 60
Query: 102 GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLI 161
GFPAKF DFKIQNMVGS DVKF IRLE LVL H QF+S+EPELFPGL+YRM+KP++VLLI
Sbjct: 61 GFPAKFKDFKIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLI 120
Query: 162 FVSGKVVLT 170
FVSGKVVLT
Sbjct: 121 FVSGKVVLT 129
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V +V++ + L+++ L HA+ + P+ F ++ R+ +P+ LIF SGK+V T
Sbjct: 70 KIQNMVGSVDVKFAIRLEQLVLNHAQFTSFEPELFPGLVYRMIKPKLVLLIFVSGKVVLT 129
Query: 80 GAKSEED 86
GAK ++
Sbjct: 130 GAKQRKE 136
>gi|308809792|ref|XP_003082205.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
gi|116060673|emb|CAL57151.1| transcription initiation factor tbp1-maize (ISS) [Ostreococcus
tauri]
Length = 258
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 130/169 (76%), Gaps = 21/169 (12%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPK---------------------RFAAVIMRI 61
+NIV+TVNL CKLDLK IA HARN EYNPK RFAA IMRI
Sbjct: 50 RNIVATVNLDCKLDLKTIAFHARNVEYNPKVRRATRAPTLGEPTRRDENDFRFAAAIMRI 109
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
R P+TTALIFSSGKMVCTGAK+E +R AARKYA++I KLGFPA+F DFKIQNMVGSCDV
Sbjct: 110 RNPKTTALIFSSGKMVCTGAKTEALAREAARKYAKVIIKLGFPAQFKDFKIQNMVGSCDV 169
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+FPIRLEGL HG F+ YEPELFPGLIYRM P+IVLLIFVSGK+VLT
Sbjct: 170 QFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 218
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ +A H A+Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 159 KIQNMVGSCDVQFPIRLEGLAWQHGHFAQYEPELFPGLIYRMQMPKIVLLIFVSGKIVLT 218
Query: 80 GAKSEED 86
G K ED
Sbjct: 219 GGKRRED 225
>gi|383860592|ref|XP_003705773.1| PREDICTED: TATA-box-binding protein-like [Megachile rotundata]
Length = 241
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 113/164 (68%), Positives = 131/164 (79%), Gaps = 2/164 (1%)
Query: 9 PMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
P+TP V P LQN+VSTVNLG +L L +I RN+EYNP RF +IMRIR PR
Sbjct: 53 PLTPAHSTKEVLEPCLQNVVSTVNLGTELKLMQINTRTRNSEYNPARFTGLIMRIRNPRA 112
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF SGK+VCTGA+ EEDS LA RK+ARIIQKLGFP KF +FKIQN+V +CD+KFPI+
Sbjct: 113 TALIFHSGKLVCTGARCEEDSYLATRKFARIIQKLGFPVKFYNFKIQNIVATCDLKFPIK 172
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GK+VLT
Sbjct: 173 LENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + +H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 157 KIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 217 GAKNRTE 223
>gi|407813853|gb|AFU35092.1| TATA box binding protein, partial [Tetranychus urticae]
Length = 122
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/120 (96%), Positives = 117/120 (97%)
Query: 51 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDF 110
PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKFLDF
Sbjct: 1 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 80 GA 81
GA
Sbjct: 121 GA 122
>gi|345492218|ref|XP_001603648.2| PREDICTED: TATA-box-binding protein-like [Nasonia vitripennis]
Length = 238
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 134/171 (78%), Gaps = 2/171 (1%)
Query: 2 SPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
+P PM P G + P LQN+VSTV+LGC+L+L I RN+EYNP RF +IM
Sbjct: 43 NPQASMTPMVPASGGKELVDPMLQNVVSTVSLGCELNLTYINTRTRNSEYNPARFTGLIM 102
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
RIR PR TALIF SGK+VCTGA+ EEDS LAA+K+ARIIQK+GFP KF DFKIQN+V +
Sbjct: 103 RIRNPRVTALIFRSGKLVCTGARCEEDSFLAAKKFARIIQKIGFPVKFRDFKIQNIVATA 162
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPI+LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GK+VLT
Sbjct: 163 DLKFPIKLENLSHKHGQFSSYEPELYPGLIYRMVLPRVVLLIFVNGKIVLT 213
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ ++ H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 154 KIQNIVATADLKFPIKLENLSHKHGQFSSYEPELYPGLIYRMVLPRVVLLIFVNGKIVLT 213
Query: 80 GAKSEED 86
GAK+ ++
Sbjct: 214 GAKNRQE 220
>gi|403333508|gb|EJY65856.1| Tata box binding protein [Oxytricha trifallax]
Length = 500
Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVST NLG KLDL+KIA++ RNAEYNPKRFAAVIMRIR+P+TTALIFSSGKMVCT
Sbjct: 310 PILQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCT 369
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE SR AA+KY++ I+K+GF DFKIQN+VGSCDV FPI LE L TH +FS
Sbjct: 370 GAKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFS 429
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGLIYRM P+IVLLIF SGK+VLT
Sbjct: 430 QYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 461
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++G + L+ ++ H + ++Y P+ F +I R+ P+ LIF+SGK+V T
Sbjct: 402 KIQNIVGSCDVGFPISLESLSSTHEKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 461
Query: 80 GAKSEEDSRLA 90
GAK++ D + A
Sbjct: 462 GAKNKNDIKEA 472
>gi|222433591|gb|ACM51140.1| TATA box binding protein [Tetranychus cinnabarinus]
Length = 122
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 115/120 (95%), Positives = 116/120 (96%)
Query: 51 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDF 110
PK FAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYARI+QKLGF AKFLDF
Sbjct: 1 PKSFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARIVQKLGFDAKFLDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H++ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 61 KIQNMVGSCDVKFPIRLEGLVLTHSQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 120
Query: 80 GA 81
GA
Sbjct: 121 GA 122
>gi|350425498|ref|XP_003494140.1| PREDICTED: TATA-box-binding protein-like [Bombus impatiens]
Length = 241
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 134/172 (77%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P + PMTP + V P LQN+VSTVNLG +L L I RN+EYNP RF ++
Sbjct: 45 LNPQSLINPMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFTGLV 104
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIR PR TALIF SGK+VCTGA+ EEDS LA RK+ARIIQKLGF KF +FKIQN+V +
Sbjct: 105 MRIRNPRATALIFHSGKLVCTGARCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVAT 164
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPI+LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GK+VLT
Sbjct: 165 CDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + +H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 157 KIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Query: 80 GAKS 83
GAK+
Sbjct: 217 GAKN 220
>gi|340728982|ref|XP_003402790.1| PREDICTED: TATA-box-binding protein-like [Bombus terrestris]
Length = 241
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/172 (65%), Positives = 134/172 (77%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P + PMTP + V P LQN+VSTVNLG +L L I RN+EYNP RF ++
Sbjct: 45 LNPQSLINPMTPANSTKEVIEPCLQNVVSTVNLGIQLPLMYINTRTRNSEYNPARFTGLV 104
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIR PR TALIF SGK+VCTGA+ EEDS LA RK+ARIIQKLGF KF +FKIQN+V +
Sbjct: 105 MRIRNPRATALIFHSGKLVCTGARCEEDSFLATRKFARIIQKLGFTVKFYNFKIQNIVAT 164
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPI+LE L HGQFSSYEPEL+PGLIYRMV PR+VLLIFV+GK+VLT
Sbjct: 165 CDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + +H + + Y P+ + +I R+ PR LIF +GK+V T
Sbjct: 157 KIQNIVATCDLKFPIKLENLNHIHGQFSSYEPELYPGLIYRMVSPRVVLLIFVNGKIVLT 216
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 217 GAKNRAE 223
>gi|331686250|gb|AED87005.1| tata box binding protein [Stylonychia lemnae]
Length = 285
Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVST NLG KLDL+KIAL+ RNAEYNPKRFAAVIMRIREP+TTALIFSSGKMVCT
Sbjct: 101 PVLQNIVSTANLGIKLDLRKIALNCRNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE S+ AA+KY++ I+K+GF DFKIQN+VGSCDV+FPI LE L H +FS
Sbjct: 161 GAKSEEFSKDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVRFPISLESLSQEHDKFS 220
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGLIYRM P+IVLLIF SGK+VLT
Sbjct: 221 QYEPEIFPGLIYRMANPKIVLLIFASGKIVLT 252
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ ++ H + ++Y P+ F +I R+ P+ LIF+SGK+V T
Sbjct: 193 KIQNIVGSCDVRFPISLESLSQEHDKFSQYEPEIFPGLIYRMANPKIVLLIFASGKIVLT 252
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAK++ D LA ++QK
Sbjct: 253 GAKNKNDITLAFNNIYPVLQKF 274
>gi|47217167|emb|CAG11003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 283
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/118 (94%), Positives = 116/118 (98%)
Query: 53 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKI 112
RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKI
Sbjct: 140 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKI 199
Query: 113 QNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
QNMVGSCDV+FPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 200 QNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 257
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 198 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 257
Query: 80 GAK 82
GAK
Sbjct: 258 GAK 260
>gi|331686248|gb|AED87004.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 302
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/152 (75%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVST NLG KLDL+KIA++ RNAEYNPKRFAAVIMRIR+P+TTALIFSSGKMVCT
Sbjct: 112 PILQNIVSTANLGMKLDLRKIAMNCRNAEYNPKRFAAVIMRIRDPKTTALIFSSGKMVCT 171
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE SR AA+KY++ I+K+GF DFKIQN+VGSCDV FPI LE L TH +FS
Sbjct: 172 GAKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSTHEKFS 231
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGLIYRM P+IVLLIF SGK+VLT
Sbjct: 232 QYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 263
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++G + L+ ++ H + ++Y P+ F +I R+ P+ LIF+SGK+V T
Sbjct: 204 KIQNIVGSCDVGFPISLESLSSTHEKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 263
Query: 80 GAKSEEDSRLA 90
GAK++ D + A
Sbjct: 264 GAKNKNDIKEA 274
>gi|332018160|gb|EGI58766.1| TATA-box-binding protein [Acromyrmex echinatior]
Length = 240
Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 111/164 (67%), Positives = 132/164 (80%), Gaps = 2/164 (1%)
Query: 9 PMTPVDMGGSVPQ--LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
P+TPV+ VP+ LQN+VSTVNL +L L I + RN+EYNP RF +IMRI+ PR
Sbjct: 52 PITPVNSTKEVPEPCLQNVVSTVNLQTELKLMYINVRTRNSEYNPARFTGLIMRIQNPRA 111
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIR 126
TALIF SGK+VCTGA+SE+DS LAA+K+ARIIQKLGFP KF FKIQN+V +CD+KFPI+
Sbjct: 112 TALIFRSGKLVCTGARSEQDSFLAAKKFARIIQKLGFPVKFSSFKIQNIVATCDLKFPIK 171
Query: 127 LEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LE L HGQFSSYEPEL+PGL YRM PR+VLLIFV+GKVVLT
Sbjct: 172 LEILYQCHGQFSSYEPELYPGLTYRMYSPRVVLLIFVNGKVVLT 215
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L+ + H + + Y P+ + + R+ PR LIF +GK+V T
Sbjct: 156 KIQNIVATCDLKFPIKLEILYQCHGQFSSYEPELYPGLTYRMYSPRVVLLIFVNGKVVLT 215
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 216 GAKNRTE 222
>gi|403278005|ref|XP_003930626.1| PREDICTED: TATA box-binding protein-like protein 2 [Saimiri
boliviensis boliviensis]
Length = 381
Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 121/169 (71%), Positives = 130/169 (76%), Gaps = 7/169 (4%)
Query: 9 PMTPV----DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA---VIMRI 61
PM+PV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPK +
Sbjct: 188 PMSPVTSVSECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKLCGEPWHIFSYD 247
Query: 62 REPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
+P + A EE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV
Sbjct: 248 YQPNLPCVKPLRSFTSPGSANCEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDV 307
Query: 122 KFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
KFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 308 KFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 356
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 297 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 356
Query: 80 GAKSEED 86
GAK +
Sbjct: 357 GAKERSE 363
>gi|449016069|dbj|BAM79471.1| TATA-box binding protein [Cyanidioschyzon merolae strain 10D]
Length = 260
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/171 (63%), Positives = 138/171 (80%), Gaps = 1/171 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+S +TP PV + +LQN+V++VNL C LDL+ IA+ ARNAEYNP+RFAAVIMR
Sbjct: 24 VSTTTPERLRRPVVVADVEVRLQNVVASVNLLCPLDLRHIAMRARNAEYNPQRFAAVIMR 83
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSC 119
IR+PRTTALIFSSGK+V TGA+SEED+RLAARKYA+I++KLG+ K DF++ N+V S
Sbjct: 84 IRDPRTTALIFSSGKVVITGARSEEDARLAARKYAKIVRKLGYADVKLADFELHNLVASA 143
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLE L H ++ YEPELFPGL+YRM++PR+ LLIFVSGKVV+T
Sbjct: 144 DVRFPIRLEALAHAHSNYAHYEPELFPGLVYRMLEPRLALLIFVSGKVVIT 194
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+L N+V++ ++ + L+ +A H+ A Y P+ F ++ R+ EPR LIF SGK+V T
Sbjct: 135 ELHNLVASADVRFPIRLEALAHAHSNYAHYEPELFPGLVYRMLEPRLALLIFVSGKVVIT 194
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 195 GAKSRDD 201
>gi|403354886|gb|EJY77003.1| Tata box binding protein [Oxytricha trifallax]
Length = 502
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 123/151 (81%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIV+T N GCKLDL++IAL+ARN EYNPKRFAA IMRIREP+TTALIF SGKMVCT
Sbjct: 299 PTLQNIVATCNFGCKLDLRQIALNARNCEYNPKRFAAAIMRIREPKTTALIFQSGKMVCT 358
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAK EE SR A ++YA+ ++K+GF + +FKIQN+V S D FPI LEGL H +FS+
Sbjct: 359 GAKDEEKSRTACKQYAKAVRKIGFNVQMKEFKIQNVVASHDCGFPISLEGLSNEHDKFST 418
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGLIYRM P++V+LIF SGK+V T
Sbjct: 419 YEPELFPGLIYRMASPKLVMLIFASGKIVFT 449
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ + G + L+ ++ H + + Y P+ F +I R+ P+ LIF+SGK+V TG
Sbjct: 391 IQNVVASHDCGFPISLEGLSNEHDKFSTYEPELFPGLIYRMASPKLVMLIFASGKIVFTG 450
Query: 81 AKSEEDSRLAARKYARIIQK 100
AK+ E R A R +++K
Sbjct: 451 AKTREQIRDAYRNIDPVLRK 470
>gi|167518271|ref|XP_001743476.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778575|gb|EDQ92190.1| predicted protein [Monosiga brevicollis MX1]
Length = 181
Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/152 (71%), Positives = 130/152 (85%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P +N+V+TV CKLDLK IA +ARNAEY+PKRF+AVIMRIREP TTALIFSSGKM+CT
Sbjct: 5 PYCRNLVATVTFNCKLDLKHIANNARNAEYSPKRFSAVIMRIREPHTTALIFSSGKMICT 64
Query: 80 GAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSE+D+ A RKYA+II+KLG+ + +F+IQNMVGSCDV+FPIRLEGL H F
Sbjct: 65 GAKSEDDAWRATRKYAQIIKKLGYGELRHENFQIQNMVGSCDVRFPIRLEGLAANHQCFC 124
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+YEPE+FPGL+YRMVKP++VLLIFVSGKVV+T
Sbjct: 125 TYEPEIFPGLVYRMVKPKVVLLIFVSGKVVVT 156
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
Q+QN+V + ++ + L+ +A H Y P+ F ++ R+ +P+ LIF SGK+V T
Sbjct: 97 QIQNMVGSCDVRFPIRLEGLAANHQCFCTYEPEIFPGLVYRMVKPKVVLLIFVSGKVVVT 156
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP 104
GAKS + A I+Q+ P
Sbjct: 157 GAKSRQTIHDAINAIYSILQQFRKP 181
>gi|18483230|gb|AAL73974.1|AF466201_3 TATA-binding protein [Sorghum bicolor]
Length = 203
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/150 (76%), Positives = 123/150 (82%), Gaps = 17/150 (11%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+NIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 59 DFRNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM---- 114
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
YARIIQKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +HG FSSY
Sbjct: 115 -------------YARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSY 161
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 162 EPELFPGLIYRMKQPKIVLLIFVSGKIVLT 191
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 132 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 191
Query: 80 GAKSEE 85
GAK +
Sbjct: 192 GAKMTQ 197
>gi|331686256|gb|AED87008.1| tata box binding protein [Nyctotherus ovalis]
Length = 195
Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 129/151 (85%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P+L+NIVSTVNL C+LDL+KI L A+NAEYNPKRFAAVIMRIR P+TTALIFSSGK+VCT
Sbjct: 15 PRLENIVSTVNLACELDLRKITLQAKNAEYNPKRFAAVIMRIRNPKTTALIFSSGKIVCT 74
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKSE DSR AA KYA+ I+KLGF KF +F IQNMV SC V+F I L+ L+L++ +FS+
Sbjct: 75 GAKSETDSRTAAMKYAKTIKKLGFNVKFKEFTIQNMVASCGVEFGINLDELLLSYNRFST 134
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y+PE+FPGLI+RM P+IV LIF SGK++LT
Sbjct: 135 YDPEIFPGLIFRMEDPKIVFLIFSSGKIILT 165
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V++ + ++L ++ L + R + Y+P+ F +I R+ +P+ LIFSSGK++ TG
Sbjct: 107 IQNMVASCGVEFGINLDELLLSYNRFSTYDPEIFPGLIFRMEDPKIVFLIFSSGKIILTG 166
Query: 81 AKSEE 85
AK +
Sbjct: 167 AKQRD 171
>gi|242014208|ref|XP_002427783.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512252|gb|EEB15045.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 231
Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/149 (72%), Positives = 126/149 (84%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
LQN+V+TVNL +LDL+KI RN EYNP RF ++MRIREP+TTALIF SGK+V TGA
Sbjct: 58 LQNVVATVNLMNELDLRKINFCTRNTEYNPSRFKGLVMRIREPKTTALIFRSGKIVVTGA 117
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
KSE+ + LAARKYARIIQKLGF KF FKIQN+VG+CDV+FPI+LE L HGQFSSYE
Sbjct: 118 KSEDAALLAARKYARIIQKLGFSIKFCSFKIQNIVGTCDVRFPIKLESLNQIHGQFSSYE 177
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFP LIYR+VKPR+VLLIFV+GK+VLT
Sbjct: 178 PELFPALIYRLVKPRVVLLIFVNGKIVLT 206
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV T ++ + L+ + +H + + Y P+ F A+I R+ +PR LIF +GK+V T
Sbjct: 147 KIQNIVGTCDVRFPIKLESLNQIHGQFSSYEPELFPALIYRLVKPRVVLLIFVNGKIVLT 206
Query: 80 GAKSEED 86
GA++++D
Sbjct: 207 GARTQQD 213
>gi|331686252|gb|AED87006.1| tata box binding protein [Sterkiella histriomuscorum]
Length = 299
Score = 228 bits (581), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 131/165 (79%), Gaps = 3/165 (1%)
Query: 9 PMTPVDMGGSVPQ--LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
P T +PQ LQNIVST NLG KLDL+KIAL+ RNAEYNP+RFAAVIMRIREP+T
Sbjct: 96 PQTAQTSSEKIPQPILQNIVSTANLGMKLDLRKIALNCRNAEYNPRRFAAVIMRIREPKT 155
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPI 125
TALIFSSGKMV TGAKSEE SR AA+KY++ I+K+GF DFKIQN+VGSCDV FPI
Sbjct: 156 TALIFSSGKMVRTGAKSEEFSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPI 215
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LE L H +FS YEPE+FPGLIYRM P+IVLLIF SGK+VLT
Sbjct: 216 SLESLSSAHDKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 260
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++G + L+ ++ H + ++Y P+ F +I R+ P+ LIF+SGK+V T
Sbjct: 201 KIQNIVGSCDVGFPISLESLSSAHDKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 260
Query: 80 GAKSEEDSRLA 90
GAK++ D + A
Sbjct: 261 GAKNKNDIKEA 271
>gi|348686379|gb|EGZ26194.1| hypothetical protein PHYSODRAFT_345098 [Phytophthora sojae]
Length = 255
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/149 (69%), Positives = 130/149 (87%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V TV+L LDLK IALHARNAEYNPKRF+AVIMR+R+P+TTALIF SGK+V TG
Sbjct: 53 KIMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITG 112
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
SEE RLAARK+ R+IQKL FPAKF +FK++N++G+CD++FPIRLEGL+ H +FSSY
Sbjct: 113 GTSEESCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSY 172
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
EPELFPGLIY++V+P++ LLIFVSGK+VL
Sbjct: 173 EPELFPGLIYKLVEPKLTLLIFVSGKIVL 201
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
L KI N+VG+ D+K P+ L+ + L H + + Y P+ F +I R+ P+ LIF SGK+
Sbjct: 50 LQVKIMNVVGTVDLKTPLDLKTIAL-HARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKI 108
Query: 168 VLT 170
V+T
Sbjct: 109 VIT 111
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+++N++ T ++ + L+ + HAR + Y P+ F +I ++ EP+ T LIF SGK+V
Sbjct: 143 KVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPELFPGLIYKLVEPKLTLLIFVSGKIVLC 202
Query: 80 GAKS 83
GA+
Sbjct: 203 GARD 206
>gi|432937597|ref|XP_004082456.1| PREDICTED: LOW QUALITY PROTEIN: TATA box-binding protein-like
protein 2-like [Oryzias latipes]
Length = 354
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/156 (74%), Positives = 127/156 (81%), Gaps = 2/156 (1%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTV LGC LDLK IA ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 174 GIVPQLQNIVSTVTLGCPLDLKFIARQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 233
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE+SRLAARKYAR++QKLGF A+FL+FKIQNMV SCDV FPIRLEGLVLTH Q
Sbjct: 234 VCTGAKSEEESRLAARKYARVVQKLGFSARFLEFKIQNMVASCDVCFPIRLEGLVLTHQQ 293
Query: 137 FSSYEPELFPGLIYRMVK-PRIVLLIFVSG-KVVLT 170
FS Y+ P + P+++L F+ VVLT
Sbjct: 294 FSRYQSHQHPTNSWTSCXFPKMLLCFFLDHISVVLT 329
>gi|301112330|ref|XP_002905244.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262095574|gb|EEY53626.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 251
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/149 (68%), Positives = 130/149 (87%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V TV+L LDLK IALHARNAEYNPKRF+AVIMR+R+P+TTALIF SGK+V TG
Sbjct: 49 KIMNVVGTVDLKTPLDLKTIALHARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKIVITG 108
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
SE+ RLAARK+ R+IQKL FPAKF +FK++N++G+CD++FPIRLEGL+ H +FSSY
Sbjct: 109 GTSEDSCRLAARKFTRVIQKLNFPAKFTEFKVRNVMGTCDIRFPIRLEGLLNDHARFSSY 168
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
EPELFPGLIY++V+P++ LLIFVSGK+VL
Sbjct: 169 EPELFPGLIYKLVEPKLTLLIFVSGKIVL 197
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
L+ KI N+VG+ D+K P+ L+ + L H + + Y P+ F +I R+ P+ LIF SGK+
Sbjct: 46 LEVKIMNVVGTVDLKTPLDLKTIAL-HARNAEYNPKRFSAVIMRLRDPKTTALIFGSGKI 104
Query: 168 VLT 170
V+T
Sbjct: 105 VIT 107
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+++N++ T ++ + L+ + HAR + Y P+ F +I ++ EP+ T LIF SGK+V
Sbjct: 139 KVRNVMGTCDIRFPIRLEGLLNDHARFSSYEPELFPGLIYKLVEPKLTLLIFVSGKIVLC 198
Query: 80 GAKS 83
GA+
Sbjct: 199 GARD 202
>gi|307206120|gb|EFN84200.1| TATA-box-binding protein [Harpegnathos saltator]
Length = 241
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/172 (61%), Positives = 135/172 (78%), Gaps = 2/172 (1%)
Query: 1 MSPSTPGPPMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
++P + PMTPV V P LQN+VST++L +L L I + RN+EYNP RF ++
Sbjct: 45 VNPQSMMSPMTPVHSTNEVLEPCLQNVVSTIDLQTELKLMYINVRTRNSEYNPARFTGLV 104
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRI+ PR TALIF SGK+VCTGA+SE++S LAA+K+ARIIQKLGFP +F F +QN+V +
Sbjct: 105 MRIQNPRATALIFRSGKLVCTGARSEDESLLAAKKFARIIQKLGFPVRFTSFTVQNIVAT 164
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPI+LE L HGQFSSYEPEL+PGL YRM+KPR+VLLIFV+GKVV+T
Sbjct: 165 CDLKFPIKLESLNQMHGQFSSYEPELYPGLTYRMLKPRVVLLIFVNGKVVIT 216
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QNIV+T +L + L+ + +H + + Y P+ + + R+ +PR LIF +GK+V TG
Sbjct: 158 VQNIVATCDLKFPIKLESLNQMHGQFSSYEPELYPGLTYRMLKPRVVLLIFVNGKVVITG 217
Query: 81 AKSEED 86
AK ED
Sbjct: 218 AKKRED 223
>gi|331686254|gb|AED87007.1| tata box binding protein [Sterkiella nova]
Length = 301
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/152 (71%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P LQNIVST NLG +L L++IA++ RNAEYNP+RFAAVIMRIREP+TTALIF SGKMVCT
Sbjct: 111 PTLQNIVSTANLGVELKLREIAMNCRNAEYNPRRFAAVIMRIREPKTTALIFRSGKMVCT 170
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE SR AA+KY++ I+K+GF DFKIQN+VGSCDV FPI LE L H +FS
Sbjct: 171 GAKSEELSRDAAKKYSKAIKKVGFEDVNMQDFKIQNIVGSCDVGFPISLESLSSAHDKFS 230
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGLIYRM P+IVLLIF SGK+VLT
Sbjct: 231 QYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 262
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++G + L+ ++ H + ++Y P+ F +I R+ P+ LIF+SGK+V T
Sbjct: 203 KIQNIVGSCDVGFPISLESLSSAHDKFSQYEPEIFPGLIYRMATPKIVLLIFASGKIVLT 262
Query: 80 GAKSEEDSRLA 90
GAK++ D + A
Sbjct: 263 GAKNKNDIKEA 273
>gi|170031575|ref|XP_001843660.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167870488|gb|EDS33871.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 236
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 127/149 (85%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N V+TV+LGC+L+L+ I RN+EYNP RF V+MRIR+PR TAL+F SGK+VCTGA
Sbjct: 63 VRNCVATVSLGCELNLQSINFRTRNSEYNPSRFHGVVMRIRDPRCTALVFRSGKIVCTGA 122
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
K+E D+ LAARK+ARIIQK+G+ KFL+FK+QN+V + D++FP+RLE L HGQFSSYE
Sbjct: 123 KNEHDANLAARKFARIIQKVGYNVKFLEFKVQNLVATVDLRFPVRLENLNQVHGQFSSYE 182
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFPGLIYRMVKPR+VLLIFV+GK+V T
Sbjct: 183 PELFPGLIYRMVKPRVVLLIFVNGKIVFT 211
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 152 KVQNLVATVDLRFPVRLENLNQVHGQFSSYEPELFPGLIYRMVKPRVVLLIFVNGKIVFT 211
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GAKSE + R + I+Q
Sbjct: 212 GAKSEWEIRESLENIYPILQSF 233
>gi|378755540|gb|EHY65566.1| TATA-binding protein, partial [Nematocida sp. 1 ERTm2]
Length = 159
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/151 (70%), Positives = 126/151 (83%), Gaps = 8/151 (5%)
Query: 12 PVDMG--------GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
PVD G G +P +QNIV+TVNL C+LDLK IAL ARNAEYNPKRFAAVI+RIR+
Sbjct: 9 PVDDGVDLSKHPSGLIPTIQNIVATVNLCCRLDLKAIALGARNAEYNPKRFAAVIIRIRK 68
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
PRTTALIF+SGKMV TGA+SEEDS++AA+KY+ II++LG+P +F +FKIQN+V SCD KF
Sbjct: 69 PRTTALIFASGKMVVTGARSEEDSKMAAKKYSIIIRRLGYPVRFTEFKIQNIVSSCDTKF 128
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVK 154
IRLEGLV H +SSYEPELFPGLIYRMVK
Sbjct: 129 SIRLEGLVFGHSNYSSYEPELFPGLIYRMVK 159
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IQN+V + ++ + L+ + L + + Y P+ F +I R+ KPR LIF SGK+V+T
Sbjct: 27 IQNIVATVNLCCRLDLKAIALG-ARNAEYNPKRFAAVIIRIRKPRTTALIFASGKMVVT 84
>gi|157126257|ref|XP_001654561.1| TATA binding protein, putative [Aedes aegypti]
gi|108882533|gb|EAT46758.1| AAEL002079-PA [Aedes aegypti]
Length = 234
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 127/149 (85%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N V+TV+LGC+L+L+ I RN+EYNP RF V+MRIREPR TAL+F SGK+VCTGA
Sbjct: 61 VRNCVATVSLGCELNLQAINFRLRNSEYNPARFHGVVMRIREPRCTALVFRSGKIVCTGA 120
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
++E D+ LAARK+ARIIQKLG+ +F++FK+QN+V + D++FPIRLE L HGQFSSYE
Sbjct: 121 RNEADAYLAARKFARIIQKLGYSVRFIEFKVQNLVATVDLRFPIRLENLNQVHGQFSSYE 180
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFPGLIYRMVKPR+VLLIFV+GK+V T
Sbjct: 181 PELFPGLIYRMVKPRVVLLIFVNGKIVFT 209
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 150 KVQNLVATVDLRFPIRLENLNQVHGQFSSYEPELFPGLIYRMVKPRVVLLIFVNGKIVFT 209
Query: 80 GAKSEED 86
GAKSE +
Sbjct: 210 GAKSERE 216
>gi|125984322|ref|XP_001355925.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|195172938|ref|XP_002027252.1| GL24756 [Drosophila persimilis]
gi|54644243|gb|EAL32984.1| GA20441 [Drosophila pseudoobscura pseudoobscura]
gi|194113089|gb|EDW35132.1| GL24756 [Drosophila persimilis]
Length = 220
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 27 LQPQQPAVLVEPKDAQHEI-KLQNIVATFSVNCELDLKTINSRTRNSEYSPKRFRGVIMR 85
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E D+ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 86 MHSPRCTALIFRTGKIICTGARNERDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 145
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 146 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 195
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 136 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 195
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 196 GAKSRKD 202
>gi|194759081|ref|XP_001961778.1| GF14757 [Drosophila ananassae]
gi|190615475|gb|EDV30999.1| GF14757 [Drosophila ananassae]
Length = 224
Score = 221 bits (563), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 102/170 (60%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPAALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E D+ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKIICTGARNEIDADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|126723804|gb|ABO26816.1| TATA-box binding protein, partial [Perna canaliculus]
Length = 111
Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/111 (92%), Positives = 109/111 (98%)
Query: 32 GCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAA 91
GCKLDLK+IALHARNAEYNPKRFAAVIMRIR+PRTTALIFSSGKMVCTGAKSE+ ++LAA
Sbjct: 1 GCKLDLKRIALHARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEDQAKLAA 60
Query: 92 RKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
RKYARI+QKLGF AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP
Sbjct: 61 RKYARIVQKLGFAAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 111
>gi|258563652|ref|XP_002582571.1| TATA-box binding protein [Uncinocarpus reesii 1704]
gi|237908078|gb|EEP82479.1| TATA-box binding protein [Uncinocarpus reesii 1704]
Length = 251
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 130/179 (72%), Gaps = 27/179 (15%)
Query: 2 SPSTPGP-PMTPVDMGGSVPQLQ---------NIVSTVNLGCKLDLKKIALHARNAEYNP 51
SP+TP P + G +P LQ NIV+TVNL C+LDLK IALHARNAEYNP
Sbjct: 59 SPATPAATPGAGPGVSGLLPTLQMLKAMLFSRNIVATVNLDCRLDLKTIALHARNAEYNP 118
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFK 111
KRFAAVIMRIREP+TTALIF+SGKMV TGAK+ GF AKF DFK
Sbjct: 119 KRFAAVIMRIREPKTTALIFASGKMVVTGAKNS-----------------GFNAKFTDFK 161
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
IQN+VGSCD+KF IRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 162 IQNIVGSCDIKFSIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 220
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 161 KIQNIVGSCDIKFSIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 220
Query: 80 GAKSEED 86
GAK E+
Sbjct: 221 GAKVREE 227
>gi|195117828|ref|XP_002003449.1| GI17918 [Drosophila mojavensis]
gi|193914024|gb|EDW12891.1| GI17918 [Drosophila mojavensis]
Length = 220
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P P D + +LQNIV+T ++ C+LDLK I RN+EY PKRF VIMR
Sbjct: 27 LQPQQPAVLTEPKDAQHEI-KLQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMR 85
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+D+K+QN+V + D
Sbjct: 86 MHSPRCTALIFRTGKVICTGARNETEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVD 145
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GK+V T
Sbjct: 146 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFT 195
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 136 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFT 195
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 196 GAKSRKD 202
>gi|323447675|gb|EGB03588.1| hypothetical protein AURANDRAFT_33824 [Aureococcus anophagefferens]
Length = 274
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/155 (65%), Positives = 128/155 (82%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G+ +QN+V+TVNL +DL+ +AL+ARNAEYNPK+FAAVIMR+REPR TAL+FS+GK
Sbjct: 44 SGATIDVQNVVATVNLRISIDLRTLALNARNAEYNPKKFAAVIMRVREPRCTALVFSTGK 103
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+ +R ARK+A II+K+GF KF +FK+QNMV + D FPIRLE LV H
Sbjct: 104 MVITGAKSEDAARRGARKFAAIIRKIGFQPKFGEFKVQNMVATSDAGFPIRLEALVYAHA 163
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+FSSYEPELFPGLIYR+V P+ VLL+FVSG++VLT
Sbjct: 164 KFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLT 198
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+T + G + L+ + HA+ + Y P+ F +I R+ P+T L+F SG+MV T
Sbjct: 139 KVQNMVATSDAGFPIRLEALVYAHAKFSSYEPELFPGLIYRLVIPKTVLLLFVSGRMVLT 198
Query: 80 GAKS 83
G KS
Sbjct: 199 GGKS 202
>gi|256084656|ref|XP_002578543.1| TATA-box binding protein [Schistosoma mansoni]
gi|353228683|emb|CCD74854.1| putative tata-box binding protein [Schistosoma mansoni]
Length = 211
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 136/173 (78%), Gaps = 3/173 (1%)
Query: 1 MSPSTP-GPPMTPVDM--GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
M+P P GP VD+ G P + N+VSTV+LGC ++L+K+ LH R+AEYNP+RF V
Sbjct: 13 MAPQRPIGPDSESVDLLCGIKKPVIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGV 72
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
+MR+REPR T L+F +G+MVCTGA+SE D+ L +RK ARI+Q+LGF KF++F IQNMVG
Sbjct: 73 VMRLREPRVTCLVFGTGRMVCTGARSESDANLGSRKCARILQRLGFDVKFMNFTIQNMVG 132
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D+KFPIRLEG+ L + Q + YEPE+FP LIYR++KPR+V+LIFV+GK+V+T
Sbjct: 133 LADLKFPIRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKIVMT 185
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V +L + L+ + L + + +Y P+ F A+I RI +PR LIF +GK+V TG
Sbjct: 127 IQNMVGLADLKFPIRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKIVMTG 186
Query: 81 AKSEE 85
AKS E
Sbjct: 187 AKSRE 191
>gi|195388008|ref|XP_002052684.1| GJ17690 [Drosophila virilis]
gi|194149141|gb|EDW64839.1| GJ17690 [Drosophila virilis]
Length = 220
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P P D + +LQNIV+T ++ C+LDLK I RN+EY PKRF VIMR
Sbjct: 27 LQPQQPAVLTEPKDAQHEI-KLQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMR 85
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+D+K+QN+V + D
Sbjct: 86 MHSPRCTALIFRTGKVICTGARNEMEANIGSRKFARILQKLGFPVKFVDYKLQNIVATVD 145
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GK+V T
Sbjct: 146 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFT 195
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 136 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKIVFT 195
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 196 GAKSRKD 202
>gi|195434401|ref|XP_002065191.1| GK15318 [Drosophila willistoni]
gi|194161276|gb|EDW76177.1| GK15318 [Drosophila willistoni]
Length = 226
Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 133/171 (77%), Gaps = 2/171 (1%)
Query: 1 MSPSTPGPPMT-PVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
+ P P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIM
Sbjct: 32 LQPQQPMPALVEPKDAQHEI-KLQNIVATFSVACELDLKSINSRTRNSEYSPKRFRGVIM 90
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119
R+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF D+K+QN+V +
Sbjct: 91 RMHSPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFTDYKLQNIVATV 150
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 151 DLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 201
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 142 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 201
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 202 GAKSRKD 208
>gi|189236649|ref|XP_969256.2| PREDICTED: similar to TATA-box-binding protein [Tribolium
castaneum]
Length = 236
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/175 (60%), Positives = 131/175 (74%), Gaps = 7/175 (4%)
Query: 3 PSTPGPPMTPVDMGGSVP-------QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFA 55
PS PG V GS +QN V+TV+L KLDL I RN+EYNP RF
Sbjct: 37 PSIPGKSNMIVATPGSAAGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARFH 96
Query: 56 AVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNM 115
+IMR+R+PRTTALIF +GK+VCTGAKSE+D+ LA++K+ARIIQKLGF KF +FKIQN+
Sbjct: 97 GLIMRLRDPRTTALIFQTGKIVCTGAKSEQDALLASKKFARIIQKLGFDIKFDNFKIQNL 156
Query: 116 VGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V +CD++FPI+LE L L HGQF SYEPELFPG+IYRM+KP + LLIFV+GK+V T
Sbjct: 157 VATCDLRFPIKLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFT 211
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+T +L + L+ ++L H + Y P+ F +I R+ +P LIF +GK+V T
Sbjct: 152 KIQNLVATCDLRFPIKLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFT 211
Query: 80 GAKSEE 85
G+KS E
Sbjct: 212 GSKSRE 217
>gi|195472903|ref|XP_002088737.1| GE18732 [Drosophila yakuba]
gi|194174838|gb|EDW88449.1| GE18732 [Drosophila yakuba]
Length = 224
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPVALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|17136834|ref|NP_476939.1| TBP-related factor [Drosophila melanogaster]
gi|25091428|sp|Q27896.1|TRF_DROME RecName: Full=TBP-related factor
gi|11136|emb|CAA50185.1| TBP-related factor [Drosophila melanogaster]
gi|11138|emb|CAA50186.1| TBP-related factor [Drosophila melanogaster]
gi|7297339|gb|AAF52600.1| TBP-related factor [Drosophila melanogaster]
gi|21711771|gb|AAM75076.1| RE61442p [Drosophila melanogaster]
gi|220942420|gb|ACL83753.1| Trf-PA [synthetic construct]
gi|220955718|gb|ACL90402.1| Trf-PA [synthetic construct]
gi|445085|prf||1908393A TATA-binding protein-related factor
Length = 224
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPVALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|194863019|ref|XP_001970236.1| GG10512 [Drosophila erecta]
gi|190662103|gb|EDV59295.1| GG10512 [Drosophila erecta]
Length = 224
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPVALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKIICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNHVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|195339082|ref|XP_002036150.1| GM16720 [Drosophila sechellia]
gi|194130030|gb|EDW52073.1| GM16720 [Drosophila sechellia]
Length = 224
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPVALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|195035545|ref|XP_001989238.1| GH11614 [Drosophila grimshawi]
gi|193905238|gb|EDW04105.1| GH11614 [Drosophila grimshawi]
Length = 220
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P P D + +LQNIV+T ++ C+LDLK I RN+EY PKRF VIMR
Sbjct: 27 LQPQQPAILTEPKDAQHEI-KLQNIVATFSVDCELDLKTINSRTRNSEYTPKRFRGVIMR 85
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+D+K+QN+V + D
Sbjct: 86 MHSPRCTALIFRTGKVICTGARNEIEANMGSRKFARILQKLGFPVKFVDYKLQNIVATVD 145
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPR+VLLIFV+GKVV T
Sbjct: 146 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRLVLLIFVNGKVVFT 195
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 136 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRLVLLIFVNGKVVFT 195
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 196 GAKSRKD 202
>gi|270005208|gb|EFA01656.1| hypothetical protein TcasGA2_TC007228 [Tribolium castaneum]
Length = 238
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/176 (60%), Positives = 131/176 (74%), Gaps = 7/176 (3%)
Query: 2 SPSTPGPPMTPVDMGGSVP-------QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRF 54
SP PG V GS +QN V+TV+L KLDL I RN+EYNP RF
Sbjct: 38 SPQIPGKSNMIVATPGSAAGEPHTNITIQNCVTTVDLNTKLDLALINARTRNSEYNPARF 97
Query: 55 AAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQN 114
+IMR+R+PRTTALIF +GK+VCTGAKSE+D+ LA++K+ARIIQKLGF KF +FKIQN
Sbjct: 98 HGLIMRLRDPRTTALIFQTGKIVCTGAKSEQDALLASKKFARIIQKLGFDIKFDNFKIQN 157
Query: 115 MVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+V +CD++FPI+LE L L HGQF SYEPELFPG+IYRM+KP + LLIFV+GK+V T
Sbjct: 158 LVATCDLRFPIKLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFT 213
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+T +L + L+ ++L H + Y P+ F +I R+ +P LIF +GK+V T
Sbjct: 154 KIQNLVATCDLRFPIKLESLSLLHGQFCSYEPELFPGIIYRMIKPHLCLLIFVNGKIVFT 213
Query: 80 GAKSEE 85
G+KS E
Sbjct: 214 GSKSRE 219
>gi|195577454|ref|XP_002078585.1| GD23502 [Drosophila simulans]
gi|194190594|gb|EDX04170.1| GD23502 [Drosophila simulans]
Length = 224
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/170 (59%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P P + P D + +LQNIV+T ++ C+LDLK I RN+EY+PKRF VIMR
Sbjct: 31 LQPQQPVALVEPKDAQHEI-RLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMR 89
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
+ PR TALIF +GK++CTGA++E ++ + +RK+ARI+QKLGFP KF+++K+QN+V + D
Sbjct: 90 MHSPRCTALIFRTGKVICTGARNEIEADIGSRKFARILQKLGFPVKFMEYKLQNIVATVD 149
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++FPIRLE L HGQFSSYEPE+FPGLIYRMVKPRIVLLIFV+GKVV T
Sbjct: 150 LRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+LQNIV+TV+L + L+ + +H + + Y P+ F +I R+ +PR LIF +GK+V T
Sbjct: 140 KLQNIVATVDLRFPIRLENLNQVHGQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFT 199
Query: 80 GAKSEED 86
GAKS +D
Sbjct: 200 GAKSRKD 206
>gi|226466670|emb|CAX69470.1| TATA box binding protein like 2 [Schistosoma japonicum]
Length = 212
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 136/173 (78%), Gaps = 3/173 (1%)
Query: 1 MSPSTP-GPPMTPVDM--GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
MSP P GP +D+ G P + N+VSTV+LGC ++L+K+ LH R+AEYNP+RF V
Sbjct: 14 MSPQRPVGPDSDSLDLLCGIRKPVIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGV 73
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
++R+REPR T L+F +G+MVCTGA+SE D+ L +RK ARIIQKLGF KF++F IQNMVG
Sbjct: 74 VIRLREPRVTCLVFGTGRMVCTGARSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVG 133
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D++FP+RLEG+ L + Q + YEPE+FP LIYR++KPR+V+LIFV+GKVV+T
Sbjct: 134 LADLRFPVRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKVVMT 186
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V +L + L+ + L + + +Y P+ F A+I RI +PR LIF +GK+V TG
Sbjct: 128 IQNMVGLADLRFPVRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKVVMTG 187
Query: 81 AKSEE 85
AKS E
Sbjct: 188 AKSRE 192
>gi|76155499|gb|AAX26791.2| SJCHGC06425 protein [Schistosoma japonicum]
Length = 227
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 136/173 (78%), Gaps = 3/173 (1%)
Query: 1 MSPSTP-GPPMTPVDM--GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
M+P P GP +D+ G P + N+VSTV+LGC ++L+K+ LH R+AEYNP+RF V
Sbjct: 29 MAPQRPVGPDSDSLDLLCGIRKPVIHNMVSTVDLGCPIELRKLVLHVRSAEYNPRRFPGV 88
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
++R+REPR T L+F +G+MVCTGA+SE D+ L +RK ARIIQKLGF KF++F IQNMVG
Sbjct: 89 VIRLREPRVTCLVFGTGRMVCTGARSEADANLGSRKCARIIQKLGFDVKFMNFTIQNMVG 148
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D++FP+RLEG+ L + Q + YEPE+FP LIYR++KPR+V+LIFV+GKVV+T
Sbjct: 149 LADLRFPVRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKVVMT 201
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V +L + L+ + L + + +Y P+ F A+I RI +PR LIF +GK+V TG
Sbjct: 143 IQNMVGLADLRFPVRLEGVQLANEQMTQYEPEIFPALIYRIIKPRLVMLIFVNGKVVMTG 202
Query: 81 AKSEE 85
AKS E
Sbjct: 203 AKSRE 207
>gi|281203489|gb|EFA77689.1| TATA-binding protein [Polysphondylium pallidum PN500]
Length = 192
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 121/152 (79%), Gaps = 4/152 (2%)
Query: 1 MSPSTPGPPMTPVDMG----GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA 56
++ ST P T VD+ G VP LQNIVSTVN+G +LDLK IAL ARNAEYNPKRFAA
Sbjct: 5 LAASTSSGPSTQVDLSKHPSGIVPVLQNIVSTVNMGTQLDLKTIALGARNAEYNPKRFAA 64
Query: 57 VIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
VIMRIREP+TTALIF SGKMVCTGAKSEE S+LAARKYARIIQKL FPA+F DFKIQN+V
Sbjct: 65 VIMRIREPKTTALIFKSGKMVCTGAKSEEASKLAARKYARIIQKLDFPAQFTDFKIQNIV 124
Query: 117 GSCDVKFPIRLEGLVLTHGQFSSYEPELFPGL 148
GSCDVKFPI+LE L TH F++ E++
Sbjct: 125 GSCDVKFPIKLEMLNNTHNSFTNVREEIYEAF 156
>gi|118789378|ref|XP_317373.3| AGAP008084-PA [Anopheles gambiae str. PEST]
gi|116123189|gb|EAA12691.4| AGAP008084-PA [Anopheles gambiae str. PEST]
Length = 200
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/169 (60%), Positives = 127/169 (75%), Gaps = 10/169 (5%)
Query: 8 PPMTPVDMGGSVPQ----------LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAV 57
PP + M VP ++N V+TV++GC+L+LK I RN+EYNP RF V
Sbjct: 32 PPQAGIQMQIPVPTGPQEAINSVLVRNCVATVSVGCELNLKTINFRTRNSEYNPSRFHGV 91
Query: 58 IMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
+MRIR+PR TAL+F SGK++CTGAK+E+ + L RK+ RIIQKLGF KFLDFK+QN+V
Sbjct: 92 VMRIRDPRCTALVFRSGKVICTGAKNEQQAHLGLRKFVRIIQKLGFDVKFLDFKVQNLVA 151
Query: 118 SCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGK 166
+ D++FPIRLE L HGQFSSYEPELFPGLIYRMVKPR+VLLIFV+GK
Sbjct: 152 TADLRFPIRLENLNQVHGQFSSYEPELFPGLIYRMVKPRVVLLIFVNGK 200
>gi|219113475|ref|XP_002186321.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583171|gb|ACI65791.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 203
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/151 (66%), Positives = 125/151 (82%), Gaps = 1/151 (0%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+ STVNLG +LDLKKIAL RN E+NP+RF AVIMR+REPR TALIFSSGKM TG
Sbjct: 3 RIQNMSSTVNLGTRLDLKKIALKCRNTEFNPRRFGAVIMRLREPRATALIFSSGKMCVTG 62
Query: 81 AKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
KS ++ LAA+K+A I++++GF P + +DFK+QN+VG+ DV FPIRLEGLV H F+S
Sbjct: 63 VKSTHNANLAAKKFAYIVERVGFKPKENIDFKVQNIVGTADVGFPIRLEGLVYAHSAFAS 122
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGLIYR V PR+V LIFVSGK+V+T
Sbjct: 123 YEPELFPGLIYRFVNPRVVFLIFVSGKIVIT 153
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV T ++G + L+ + H+ A Y P+ F +I R PR LIF SGK+V T
Sbjct: 94 KVQNIVGTADVGFPIRLEGLVYAHSAFASYEPELFPGLIYRFVNPRVVFLIFVSGKIVIT 153
Query: 80 GAKSEED 86
GAK E D
Sbjct: 154 GAKKEMD 160
>gi|325182645|emb|CCA17100.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 270
Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 126/149 (84%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V T++L +L+LK IALHARNAEYNPKRF AV+MR+R+P+TTALIFSSGK+V TG
Sbjct: 75 KVMNVVGTIDLKTRLELKTIALHARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKIVITG 134
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
A+SEE RLA RK+ R+IQKL FPA+F +F+IQN++G+ DV F IRLEG++ H +F SY
Sbjct: 135 ARSEEFCRLAGRKFTRVIQKLHFPARFENFRIQNIMGTSDVHFSIRLEGILNDHARFCSY 194
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
EPELFPGLIYR+ +P++ +LIFVSGK+V
Sbjct: 195 EPELFPGLIYRLTEPKLTMLIFVSGKIVF 223
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
++ K+ N+VG+ D+K + L+ + L H + + Y P+ F ++ R+ P+ LIF SGK+
Sbjct: 72 IETKVMNVVGTIDLKTRLELKTIAL-HARNAEYNPKRFCAVVMRLRDPKTTALIFSSGKI 130
Query: 168 VLT 170
V+T
Sbjct: 131 VIT 133
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNI+ T ++ + L+ I HAR Y P+ F +I R+ EP+ T LIF SGK+V
Sbjct: 165 RIQNIMGTSDVHFSIRLEGILNDHARFCSYEPELFPGLIYRLTEPKLTMLIFVSGKIVFC 224
Query: 80 GAKS 83
GAK
Sbjct: 225 GAKD 228
>gi|37727185|gb|AAO34523.1| TATA-binding protein isoform 4 [Branchiostoma floridae]
Length = 136
Score = 214 bits (546), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 103/110 (93%), Positives = 107/110 (97%)
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
IR+PRTTALIFSSGKMVCTGAKSE+ SRLAARKYAR++QKLGFP KFLDFKIQNMVGSCD
Sbjct: 1 IRDPRTTALIFSSGKMVCTGAKSEDQSRLAARKYARVVQKLGFPCKFLDFKIQNMVGSCD 60
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKFPIRLEGLVLTH QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 61 VKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 110
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L HA+ + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 51 KIQNMVGSCDVKFPIRLEGLVLTHAQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 110
Query: 80 GAKSEED 86
GAK E+
Sbjct: 111 GAKVREE 117
>gi|452819885|gb|EME26936.1| transcription initiation factor TFIID TATA-box-binding protein
[Galdieria sulphuraria]
Length = 206
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/152 (67%), Positives = 128/152 (84%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCK-LDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ N+V TVNLG + LDLK IA+ ARNAEYNPKRF AVIMR+REP+TTALIFSSGK+V T
Sbjct: 29 EIVNLVCTVNLGVRNLDLKTIAIKARNAEYNPKRFQAVIMRVREPKTTALIFSSGKIVVT 88
Query: 80 GAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE+S+ AA+K+ I++K G+ AKF +FK+QN+VG+ V FPIRLE L H QF
Sbjct: 89 GAKSEEESKRAAKKFVVIVRKCGYEEAKFSEFKVQNVVGTSAVDFPIRLEALAQAHTQFC 148
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+YEPELFPGL+YRM++P+IVLLIFVSGK+VLT
Sbjct: 149 TYEPELFPGLVYRMMEPKIVLLIFVSGKLVLT 180
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V T + + L+ +A H + Y P+ F ++ R+ EP+ LIF SGK+V T
Sbjct: 121 KVQNVVGTSAVDFPIRLEALAQAHTQFCTYEPELFPGLVYRMMEPKIVLLIFVSGKLVLT 180
Query: 80 GAKSEEDSRLAARKYARII 98
G K+ + A K ++
Sbjct: 181 GGKTRKQIDEALEKIKNVL 199
>gi|332374320|gb|AEE62301.1| unknown [Dendroctonus ponderosae]
Length = 243
Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 125/149 (83%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
LQN V+TV++ L+L+ I RN E+NP+RF +IMRIREP+TTALIF SGK+VCTGA
Sbjct: 70 LQNCVATVDMHTTLNLQLINAKTRNTEFNPQRFHGLIMRIREPKTTALIFRSGKIVCTGA 129
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
++E D+ +A++K+AR+IQKLGF KF +FK+QN+V +CD+KFPI+LE L HGQFSSYE
Sbjct: 130 RNEFDALIASKKFARVIQKLGFHIKFANFKVQNLVATCDLKFPIKLENLNHMHGQFSSYE 189
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFPGL+YRM+KP+IVLLIFV+GK+V T
Sbjct: 190 PELFPGLVYRMIKPKIVLLIFVNGKIVFT 218
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V+T +L + L+ + +H + + Y P+ F ++ R+ +P+ LIF +GK+V T
Sbjct: 159 KVQNLVATCDLKFPIKLENLNHMHGQFSSYEPELFPGLVYRMIKPKIVLLIFVNGKIVFT 218
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
G KS ED + A I++
Sbjct: 219 GGKSREDIKEALENIHPILRSF 240
>gi|307180303|gb|EFN68336.1| TATA-box-binding protein [Camponotus floridanus]
Length = 252
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/181 (60%), Positives = 129/181 (71%), Gaps = 15/181 (8%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
MSP+ P V P LQN+VST NLG +L L I + RN+EYNP RF +IMR
Sbjct: 51 MSPTIPANSTKEV----WEPCLQNVVSTANLGTELKLNYINIRTRNSEYNPARFTGLIMR 106
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGS 118
IR PR TALIFSSGK+VCTGAKSE DS LAA+++ARIIQKLGFP KF+ FK+QN+V +
Sbjct: 107 IRNPRATALIFSSGKLVCTGAKSENDSFLAAKRFARIIQKLGFPVKFMSDSFKVQNIVAT 166
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKP---------RIVLLIFVSGKVVL 169
CDVKFPI+LE L H Q SYEPEL+PGLIYR+ P ++VLLIFV+GKVVL
Sbjct: 167 CDVKFPIKLENLYREHPQLCSYEPELYPGLIYRVYIPGNRDNPPISKVVLLIFVNGKVVL 226
Query: 170 T 170
T
Sbjct: 227 T 227
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREP------ 64
PV ++QNIV+T ++ + L+ + H + Y P+ + +I R+ P
Sbjct: 150 PVKFMSDSFKVQNIVATCDVKFPIKLENLYREHPQLCSYEPELYPGLIYRVYIPGNRDNP 209
Query: 65 ---RTTALIFSSGKMVCTGAKSEEDSRLA 90
+ LIF +GK+V TGAK+ ++ R A
Sbjct: 210 PISKVVLLIFVNGKVVLTGAKNIDELRNA 238
>gi|224009416|ref|XP_002293666.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
gi|220970338|gb|EED88675.1| transcription factor IID, TATA box binding protein [Thalassiosira
pseudonana CCMP1335]
Length = 167
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/144 (68%), Positives = 122/144 (84%), Gaps = 1/144 (0%)
Query: 28 TVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDS 87
T +LG +LDLK+IAL RN E+NP+RFAAVIMR+REPR TAL+FSSG+MV TG KS +
Sbjct: 1 TADLGVRLDLKQIALRCRNTEFNPRRFAAVIMRLREPRATALLFSSGRMVITGTKSSHNC 60
Query: 88 RLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFP 146
LA +K+A I++++GF PA F+DFKIQN+VG+ DV FPIRLEG+V H FSSYEPELFP
Sbjct: 61 SLATKKFAYILERVGFQPAGFIDFKIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFP 120
Query: 147 GLIYRMVKPRIVLLIFVSGKVVLT 170
GLIYR+V+PR+VLLIFVSGKVV+T
Sbjct: 121 GLIYRLVQPRVVLLIFVSGKVVIT 144
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V TV++G + L+ + H + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 85 KIQNVVGTVDVGFPIRLEGVVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVSGKVVIT 144
Query: 80 GAKSEEDSRLAARK 93
GAK+EE A RK
Sbjct: 145 GAKTEEQMVEALRK 158
>gi|195964300|gb|ACG60161.1| TATA binding protein [Notothenia coriiceps]
Length = 171
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/119 (85%), Positives = 107/119 (89%), Gaps = 1/119 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 53 LTPMTPATPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 112
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGS
Sbjct: 113 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 171
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 74 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 132
>gi|357612499|gb|EHJ68033.1| putative TATA binding protein [Danaus plexippus]
Length = 283
Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 95/163 (58%), Positives = 126/163 (77%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P + V+ + + QN +STV+L C+L+L I R +EYNP RF V+M+I EPR T
Sbjct: 96 PMASAVNQAKNSIKFQNCISTVSLDCELNLLDIYCRTRFSEYNPARFNGVVMKILEPRAT 155
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
AL+F SGK+VCTGAK+ DS +AARK+ARIIQKLGFP KF+DFK+ N + + D++FPI+L
Sbjct: 156 ALVFRSGKIVCTGAKNGHDSYIAARKFARIIQKLGFPVKFVDFKVLNFLATADLRFPIKL 215
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L HGQF+SYEPELF GL+YRM++PR+VLLIFV+GK+V+T
Sbjct: 216 EALQQAHGQFTSYEPELFSGLVYRMIRPRVVLLIFVNGKMVIT 258
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 24 NIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
N ++T +L + L+ + H + Y P+ F+ ++ R+ PR LIF +GKMV TGAK
Sbjct: 202 NFLATADLRFPIKLEALQQAHGQFTSYEPELFSGLVYRMIRPRVVLLIFVNGKMVITGAK 261
Query: 83 SEED 86
+ ++
Sbjct: 262 TNQE 265
>gi|389748066|gb|EIM89244.1| TATA-box binding protein-like protein [Stereum hirsutum FP-91666
SS1]
Length = 249
Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 118/148 (79%), Gaps = 5/148 (3%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQ IV TVNL C+LDLK IALHARNAEY PK FAA+I+ IR+P+ TALIF SGKM
Sbjct: 45 GIVPTLQTIVVTVNLDCRLDLKTIALHARNAEYTPKCFAAIIVCIRDPKMTALIFPSGKM 104
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
+ T AKSE+DSRLA RKYARI+QKLGF AKF +FKIQN+V SCD+KF IRLEGL G
Sbjct: 105 IVTDAKSEDDSRLAPRKYARIVQKLGFNAKFSEFKIQNIVRSCDIKFFIRLEGLAYITG- 163
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVS 164
LFPGLIYRM+KP++VLLIFVS
Sbjct: 164 ----SSALFPGLIYRMIKPKVVLLIFVS 187
>gi|413933536|gb|AFW68087.1| TATA-binding protein2 [Zea mays]
Length = 139
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 106/112 (94%)
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMVCTGAKSE+ S+LAARKYARIIQKLGFPAKF DFKIQN+VGS
Sbjct: 1 MRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGS 60
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDVKFPIRLEGL +HG FSSYEPELFPGLIYRM +P+IVLLIFVSGK+VLT
Sbjct: 61 CDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 112
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+++P+ LIF SGK+V T
Sbjct: 53 KIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 112
Query: 80 GAKSEEDSRLA 90
GAK E++ A
Sbjct: 113 GAKVREETYTA 123
>gi|195964302|gb|ACG60162.1| TATA binding protein [Chionodraco rastrospinosus]
Length = 173
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/119 (84%), Positives = 106/119 (89%), Gaps = 1/119 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 55 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 114
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
RIREPRTTALIFSSGKMVC GAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGS
Sbjct: 115 RIREPRTTALIFSSGKMVCAGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V
Sbjct: 76 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 132
>gi|195964298|gb|ACG60160.1| TATA binding protein [Chaenocephalus aceratus]
Length = 173
Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/119 (84%), Positives = 106/119 (89%), Gaps = 1/119 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIV TVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 55 LTPMTPITPATPASESSGIVPQLQNIVPTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 114
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGS
Sbjct: 115 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS 173
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 76 QLQNIVPTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 134
>gi|291191925|gb|ADD83026.1| TATA box binding protein [Gobiocypris rarus]
Length = 224
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/118 (85%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
++P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 107 LTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 166
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVG 117
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVG
Sbjct: 167 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVG 224
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 128 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 186
>gi|322802013|gb|EFZ22550.1| hypothetical protein SINV_10179 [Solenopsis invicta]
Length = 158
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 111/131 (84%)
Query: 40 IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQ 99
I + RN+EYNP RF +IMRI+ PR TALIF SGK+VCTGA+SEEDS LAA+K+ARIIQ
Sbjct: 3 INVRTRNSEYNPARFTGLIMRIQNPRATALIFRSGKLVCTGARSEEDSLLAAKKFARIIQ 62
Query: 100 KLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVL 159
KLGFP KF FKIQN+V +CD+KFPI+L+ L HGQFSSYEPEL+PGL YRMV PR+VL
Sbjct: 63 KLGFPVKFTCFKIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVL 122
Query: 160 LIFVSGKVVLT 170
LIFV+GKVVLT
Sbjct: 123 LIFVNGKVVLT 133
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T +L + L + +H + + Y P+ + + R+ PR LIF +GK+V T
Sbjct: 74 KIQNIVATCDLKFPIKLDNLNQMHGQFSSYEPELYPGLTYRMVLPRVVLLIFVNGKVVLT 133
Query: 80 GAKSEED 86
GAK+ +
Sbjct: 134 GAKNRTE 140
>gi|395330269|gb|EJF62653.1| TBP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 137
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 107/112 (95%)
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIR+P+TTALIF+SGKMV TGAKSE+DSRLA+RKYARI+QKLGF AKF +FKIQN+VGS
Sbjct: 1 MRIRDPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIVQKLGFDAKFSEFKIQNIVGS 60
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CDVKFPIRLEGL +HGQFSSYEPELFPGLIYRM+KP++VLLIFVSGK+VLT
Sbjct: 61 CDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 112
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 53 KIQNIVGSCDVKFPIRLEGLAYSHGQFSSYEPELFPGLIYRMIKPKVVLLIFVSGKIVLT 112
Query: 80 GAKSEED 86
GAK E+
Sbjct: 113 GAKVREE 119
>gi|341886263|gb|EGT42198.1| hypothetical protein CAEBREN_08601 [Caenorhabditis brenneri]
Length = 210
Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 123/152 (80%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+P ++N+VST++LG LDL+KIAL+ RN EYNP RF A IMRIR PRTT LIFSSGK+VC
Sbjct: 37 IPIIENVVSTISLGVPLDLEKIALNGRNIEYNPSRFGAAIMRIRNPRTTGLIFSSGKIVC 96
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKSEE R A+RKYARI++KLG+ AK + F+IQN+V +C+V+F I L G+ TH +F
Sbjct: 97 AGAKSEESCRRASRKYARIVEKLGYQAKSVVFEIQNIVATCNVRFSINLGGISFTHLKFC 156
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++EPE+FPGL YRM++P++ ++IF SGK+ +T
Sbjct: 157 TFEPEIFPGLHYRMLQPKVTIVIFPSGKLNIT 188
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV+T N+ ++L I+ H + + P+ F + R+ +P+ T +IF SGK+ T
Sbjct: 129 EIQNIVATCNVRFSINLGGISFTHLKFCTFEPEIFPGLHYRMLQPKVTIVIFPSGKLNIT 188
Query: 80 GAKSEEDSRLAARKYARIIQK 100
GAK++ED A R I++K
Sbjct: 189 GAKNKEDIDTAFRHIYPILRK 209
>gi|326497179|dbj|BAK02174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 137
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 104/112 (92%)
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 112
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 53 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLT 112
Query: 80 GAKSEED 86
GAK E+
Sbjct: 113 GAKVREE 119
>gi|119187015|ref|XP_001244114.1| hypothetical protein CIMG_03555 [Coccidioides immitis RS]
Length = 137
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 104/112 (92%)
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MRIREP+TTALIF+SGKMV TGAKSE+DS+LA+RKYARIIQKLGF AKF DFKIQN+VGS
Sbjct: 1 MRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKLGFNAKFTDFKIQNIVGS 60
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
CD+KFPIRLEGL H FSSYEPELFPGLIYRM+KP+IVLLIFVSGK+VLT
Sbjct: 61 CDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 112
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A N + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 53 KIQNIVGSCDIKFPIRLEGLASRHHNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLT 112
Query: 80 GAKSEED 86
GAK E+
Sbjct: 113 GAKVREE 119
>gi|7960166|gb|AAF71245.1| TA-TA binding protein 1 [Gallus gallus]
gi|7960168|gb|AAF71246.1| TA-TA binding protein 1 [Gallus gallus]
Length = 210
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/116 (84%), Positives = 102/116 (87%), Gaps = 1/116 (0%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 94 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 153
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNM 115
RIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQ
Sbjct: 154 RIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQTW 209
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 115 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 173
>gi|440295403|gb|ELP88316.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 236
Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 1/160 (0%)
Query: 12 PVDMGG-SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 70
PVD+ +P +QNIV+TV L C ++L+ + RNAEYNPKRF A+I+RI P+TTAL+
Sbjct: 50 PVDINKIELPIIQNIVATVELDCNVNLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALV 109
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
F SGK+V TG K+ +DSRLA RKYARI+Q+LG+ KF FK+QN+V SCD+KF I L L
Sbjct: 110 FHSGKLVITGGKTIDDSRLAGRKYARILQRLGYEVKFNHFKVQNVVASCDMKFAISLRDL 169
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + + YEPE+FPG++YR+ +P++VLLIF SGK+V T
Sbjct: 170 ITLSPKNTKYEPEIFPGVVYRLAEPKMVLLIFASGKIVFT 209
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + L+ I L +N +Y P+ F V+ R+ EP+ LIF+SGK+V T
Sbjct: 150 KVQNVVASCDMKFAISLRDLITLSPKNTKYEPEIFPGVVYRLAEPKMVLLIFASGKIVFT 209
Query: 80 GAKSEEDSRLAARKYARII 98
G K E A + +I+
Sbjct: 210 GGKEVEQINQAFKTIYKIL 228
>gi|67479107|ref|XP_654935.1| TATA binding protein [Entamoeba histolytica HM-1:IMSS]
gi|296439771|sp|A7UFC2.1|TBPL1_ENTHI RecName: Full=TATA-box-binding protein-like protein 1; Short=EhTRF1
gi|56472030|gb|EAL49549.1| TATA binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|155007635|gb|ABS89251.1| TBP-related factor [Entamoeba histolytica]
gi|407041324|gb|EKE40663.1| transcription initiation factor TFIID family protein [Entamoeba
nuttalli P19]
gi|449703269|gb|EMD43751.1| TBPrelated factor, putative [Entamoeba histolytica KU27]
Length = 216
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 116/151 (76%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P +QNIV+TV L C ++L+ + RNAEYNPKRF A+I+RI P+TTAL+F SGK+V T
Sbjct: 39 PVIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVT 98
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
G K+ +DSRLA RKYARI+Q+LG+ KF FKIQN+V SCD+KF I L+ L+ + +
Sbjct: 99 GGKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITK 158
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPG++YR+ P++VLLIF SGK+V T
Sbjct: 159 YEPEIFPGVVYRLADPKMVLLIFASGKIVFT 189
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + LK+ I L + +Y P+ F V+ R+ +P+ LIF+SGK+V T
Sbjct: 130 KIQNVVASCDMKFAISLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKIVFT 189
Query: 80 GAKSEEDSRLAARKYARIIQKLG 102
G K E A + +I+ ++
Sbjct: 190 GGKEIEQINKAFSEIYKILLQVA 212
>gi|167386161|ref|XP_001737643.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165899478|gb|EDR26064.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 216
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 116/151 (76%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P +QNIV+TV L C ++L+ + RNAEYNPKRF A+I+RI P+TTAL+F SGK+V T
Sbjct: 39 PVIQNIVATVELDCTINLQDVVRRVRNAEYNPKRFGALIIRITNPKTTALVFHSGKLVVT 98
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
G K+ +DSRLA RKYARI+Q+LG+ KF FKIQN+V SCD+KF I L+ L+ + +
Sbjct: 99 GGKTVDDSRLAGRKYARILQRLGYNVKFNHFKIQNVVASCDMKFAISLKELIQLAPKITK 158
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPG++YR+ P++VLLIF SGK+V T
Sbjct: 159 YEPEIFPGVVYRLADPKMVLLIFASGKIVFT 189
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V++ ++ + LK+ I L + +Y P+ F V+ R+ +P+ LIF+SGK+V T
Sbjct: 130 KIQNVVASCDMKFAISLKELIQLAPKITKYEPEIFPGVVYRLADPKMVLLIFASGKIVFT 189
Query: 80 GAKSEEDSRLAARKYARIIQKLG 102
G K E A + +I+ ++
Sbjct: 190 GGKEIEQINKAFSEIYKILLQVA 212
>gi|8777987|gb|AAF79170.1| TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/109 (85%), Positives = 98/109 (89%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC L+LKKIAL+ARNAEYNPKRFAAVIMRIR PRTTALIFSSGKMVCTGAKSEEDSRLA
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
ARKYARIIQKLGFPAKF+DFKIQN+VGS DV F +RLE H QFSS
Sbjct: 61 ARKYARIIQKLGFPAKFMDFKIQNIVGSIDVGFCLRLECFHTCHSQFSS 109
>gi|8777983|gb|AAF79168.1| TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/107 (86%), Positives = 96/107 (89%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC LDLK+IAL ARNAEYNPKRFAAVIMRIR PRTTALIF SGKMVCTGAKSEEDS A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AR+YAR+IQKLGFPAKF DFKIQNMVGS DVKFPIRLE LVL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
>gi|374719192|gb|AEZ67282.1| TBP, partial [Eidolon helvum]
gi|374719194|gb|AEZ67283.1| TBP, partial [Myotis daubentonii]
gi|374719196|gb|AEZ67284.1| TBP, partial [Pipistrellus sp. DR-2011]
Length = 96
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/96 (94%), Positives = 93/96 (96%)
Query: 37 LKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 96
LK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR
Sbjct: 1 LKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYAR 60
Query: 97 IIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 132
++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL
Sbjct: 61 VVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVL 96
>gi|116195450|ref|XP_001223537.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
gi|88180236|gb|EAQ87704.1| hypothetical protein CHGG_04323 [Chaetomium globosum CBS 148.51]
Length = 242
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 117/152 (76%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
P +QN+V+TV+LGC+LDL+ I+ ARN EYN ++F A+IMRIREPRTT L+FSSGKMV
Sbjct: 34 APIIQNVVATVDLGCRLDLRLISEQARNVEYNRRKFHALIMRIREPRTTTLVFSSGKMVI 93
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE ++LAARK+AR +QK GF F DFK+QN VGS F IRLE + + + +
Sbjct: 94 TGAKSEALAKLAARKHARALQKCGFGTGFSDFKVQNYVGSATCDFLIRLERIAHMYRESA 153
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPELFPGL+Y M++P++ L+F +GK+VLT
Sbjct: 154 MYEPELFPGLVYTMLRPKLKCLVFSTGKIVLT 185
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
G S ++QN V + + L++IA ++ +A Y P+ F ++ + P+ L+FS+G
Sbjct: 121 GFSDFKVQNYVGSATCDFLIRLERIAHMYRESAMYEPELFPGLVYTMLRPKLKCLVFSTG 180
Query: 75 KMVCTGAKSEED 86
K+V TGAK+ ED
Sbjct: 181 KIVLTGAKAVED 192
>gi|8777977|gb|AAF79165.1|AF249988_1 TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 92/107 (85%), Positives = 95/107 (88%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC LDLK+IAL ARNAEYNPKRFAAVIMRIR PRTTALIF SGKMVCTGAKSE DS A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AR+YAR+IQKLGFPAKF DFKIQNMVGS DVKFPIRLE LVL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
>gi|394774083|gb|AFN37232.1| TATA-box binding protein [Aphis glycines]
Length = 149
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/109 (86%), Positives = 98/109 (89%), Gaps = 3/109 (2%)
Query: 2 SPSTPGP--PMTPVDMG-GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
+P+TP P PMTP G VPQLQNIVSTVNLGC+LDLK IALHARNAE+NPKRFAAVI
Sbjct: 41 NPATPAPMTPMTPASADPGVVPQLQNIVSTVNLGCRLDLKTIALHARNAEFNPKRFAAVI 100
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKF 107
MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL FPAKF
Sbjct: 101 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLSFPAKF 149
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L H + + + P+ F +I R+ +PR LIF SGK+V T
Sbjct: 63 QLQNIVSTVNLGCRLDLKTIAL-HARNAEFNPKRFAAVIMRIREPRTTALIFSSGKMVCT 121
>gi|8777985|gb|AAF79169.1| TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/107 (83%), Positives = 95/107 (88%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC+LDLK+IAL ARNAEYNPKRFAAVIMRIR PRTTALIFSSGKMVCTGAKSEEDS A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AR+YAR+IQKLGFPAKFLDFKIQNMVGS DV F I+LE L L H +
Sbjct: 61 ARRYARVIQKLGFPAKFLDFKIQNMVGSADVSFKIQLEALALKHATY 107
>gi|398412558|ref|XP_003857600.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
gi|339477485|gb|EGP92576.1| hypothetical protein MYCGRDRAFT_32491 [Zymoseptoria tritici IPO323]
Length = 177
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
PQ+ N+V+ VNL C+LDLK IAL RNA Y PKRF AV++R REPR+TALIF SGKM
Sbjct: 3 PQVHNVVAGVNLNCRLDLKHIALSVRNASYRPKRFPAVVVRQREPRSTALIFRSGKMQIV 62
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
G KS +D+RLA RK+AR++QKLG+ +F DF +QNMV + D + I LEGL+LT G +
Sbjct: 63 GTKSVDDARLAGRKFARMLQKLGYQPRFEDFTVQNMVANVDTRMTIHLEGLMLTPGT-HN 121
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
YEPELFPG +RMV P + L+F SGKVVL
Sbjct: 122 YEPELFPGAAFRMVDPLVTFLVFHSGKVVL 151
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QN+V+ V+ + L+ + L Y P+ F R+ +P T L+F SGK+V A
Sbjct: 95 VQNMVANVDTRMTIHLEGLMLTPGTHNYEPELFPGAAFRMVDPLVTFLVFHSGKVVLLKA 154
Query: 82 KSEEDSRLAARKY 94
K+EED A K+
Sbjct: 155 KNEEDMHEAWDKF 167
>gi|209877002|ref|XP_002139943.1| TATA-box-binding protein [Cryptosporidium muris RN66]
gi|209555549|gb|EEA05594.1| TATA-box-binding protein, putative [Cryptosporidium muris RN66]
Length = 211
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 121/159 (76%), Gaps = 5/159 (3%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G +P++QNI+++V+L C+LDL+ IA+ ARNAEYNPK+ AV+MR+REPR T L+F SG+M
Sbjct: 29 GVMPEIQNIIASVHLQCELDLRSIAISARNAEYNPKKVNAVVMRLREPRCTGLLFRSGRM 88
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
+ TGA++E D+R +K A+I QK G P KF +F+++NM+ + D KFPIRLEGL H
Sbjct: 89 MITGARNENDARYGGKKMAKICQKSGHPRVKFSNFRMENMIATADCKFPIRLEGLAYDHR 148
Query: 136 QFSSYEPELFPGLIYRM----VKPRIVLLIFVSGKVVLT 170
+F +YEPELFPGL+YR + V+L+FVSGKV++T
Sbjct: 149 EFCNYEPELFPGLVYRYHPENSPTKAVILLFVSGKVIVT 187
>gi|167387403|ref|XP_001738146.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898721|gb|EDR25505.1| TATA-box-binding protein [Entamoeba dispar SAW760]
Length = 212
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 127/170 (74%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
MS ST + + + P++ N+VST LG KL+L+KI ARNAEYNPKRFA IMR
Sbjct: 13 MSTSTESQERSLNNPNDTHPEIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMR 72
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
I P++TALIF +GK+VCTG +S E+S++A++KYA+II+K+G+P + +F +QN+VGSCD
Sbjct: 73 ISSPKSTALIFQTGKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCD 132
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKF I L LV ++ F YEPE+FPGL+YRM P++ LL+F +GKVVLT
Sbjct: 133 VKFQIALRALVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 182
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + ++ ++ L+ + + +Y P+ F ++ R+ P+ T L+FS+GK+V T
Sbjct: 123 NVQNIVGSCDVKFQIALRALVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 182
Query: 80 GAKSEEDSRLAARK 93
GAK EE LA +
Sbjct: 183 GAKDEESLNLAYKN 196
>gi|8777979|gb|AAF79166.1| TATA-box binding protein 2 [Macrotrachela quadricornifera]
gi|8777981|gb|AAF79167.1| TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/107 (85%), Positives = 94/107 (87%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC LDLK+IAL ARNAEYNPKRFAAVIMRIR PRTTALIF SGKMVCTGAKSE S A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AR+YAR+IQKLGFPAKF DFKIQNMVGS DVKFPIRLE LVL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
>gi|8777975|gb|AAF79164.1|AF249987_1 TATA-box binding protein 1 [Macrotrachela quadricornifera]
Length = 108
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/107 (85%), Positives = 94/107 (87%)
Query: 31 LGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
LGC LDLK+IAL ARNAEYNPKRFAAVIM IR PRTTALIF SGKMVCTGAKSE DS A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 91 ARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AR+YAR+IQKLGFPAKF DFKIQNMVGS DVKFPIRLE LVL H QF
Sbjct: 61 ARRYARVIQKLGFPAKFRDFKIQNMVGSVDVKFPIRLEALVLKHYQF 107
>gi|67473541|ref|XP_652533.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|296439770|sp|C4M7H7.1|TBP2_ENTHI RecName: Full=TATA-box-binding protein 2; Short=EhTBP2; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|56469391|gb|EAL47145.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 212
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 127/170 (74%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
MS ST + + + P++ N+VST LG KL+L+KI ARNAEYNPKRFA IMR
Sbjct: 13 MSTSTESQERSLNNPNDTHPEIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMR 72
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
I P++TALIF +GK+VCTG +S E+S++A++KYA+II+K+G+P + +F +QN+VGSCD
Sbjct: 73 ISSPKSTALIFQTGKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCD 132
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKF I L LV ++ F YEPE+FPGL+YRM P++ LL+F +GKVVLT
Sbjct: 133 VKFQIALRTLVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 182
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + ++ ++ L+ + + +Y P+ F ++ R+ P+ T L+FS+GK+V T
Sbjct: 123 NVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 182
Query: 80 GAKSEEDSRLAARK 93
GAK EE LA +
Sbjct: 183 GAKDEESLNLAYKN 196
>gi|167387263|ref|XP_001738088.1| TATA-box-binding protein [Entamoeba dispar SAW760]
gi|165898834|gb|EDR25598.1| TATA-box-binding protein, putative [Entamoeba dispar SAW760]
Length = 234
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 127/170 (74%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
MS ST + + + P++ N+VST LG KL+L+KI ARNAEYNPKRFA IMR
Sbjct: 35 MSTSTESQERSLNNPNDTHPEIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMR 94
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
I P++TALIF +GK+VCTG +S E+S++A++KYA+II+K+G+P + +F +QN+VGSCD
Sbjct: 95 ISSPKSTALIFQTGKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCD 154
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKF I L LV ++ F YEPE+FPGL+YRM P++ LL+F +GKVVLT
Sbjct: 155 VKFQIALRALVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 204
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + ++ ++ L+ + + +Y P+ F ++ R+ P+ T L+FS+GK+V T
Sbjct: 145 NVQNIVGSCDVKFQIALRALVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 204
Query: 80 GAKSEEDSRLAARK 93
GAK EE LA +
Sbjct: 205 GAKDEESLNLAYKN 218
>gi|183235483|ref|XP_001914239.1| transcription initiation factor TFIID [Entamoeba histolytica
HM-1:IMSS]
gi|3915894|sp|P52653.2|TBP1_ENTHI RecName: Full=TATA-box-binding protein 1; Short=EhTBP; AltName:
Full=TATA sequence-binding protein; AltName:
Full=TATA-binding factor; AltName: Full=TATA-box factor;
AltName: Full=Transcription initiation factor TFIID TBP
subunit
gi|3201503|emb|CAA88304.1| TATA box-binding protein [Entamoeba histolytica]
gi|169800528|gb|EDS88986.1| transcription initiation factor TFIID, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449703333|gb|EMD43805.1| transcription initiation factor tfiid, putative [Entamoeba
histolytica KU27]
Length = 234
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 127/170 (74%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
MS ST + + + P++ N+VST LG KL+L+KI ARNAEYNPKRFA IMR
Sbjct: 35 MSTSTESQERSLNNPNDTHPEIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMR 94
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
I P++TALIF +GK+VCTG +S E+S++A++KYA+II+K+G+P + +F +QN+VGSCD
Sbjct: 95 ISSPKSTALIFQTGKIVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCD 154
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VKF I L LV ++ F YEPE+FPGL+YRM P++ LL+F +GKVVLT
Sbjct: 155 VKFQIALRTLVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 204
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKK-IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + ++ ++ L+ + + +Y P+ F ++ R+ P+ T L+FS+GK+V T
Sbjct: 145 NVQNIVGSCDVKFQIALRTLVDSYLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 204
Query: 80 GAKSEEDSRLAARK 93
GAK EE LA +
Sbjct: 205 GAKDEESLNLAYKN 218
>gi|66359858|ref|XP_627107.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|38491418|gb|AAR21861.1| TATA-binding protein [Cryptosporidium parvum]
gi|46228532|gb|EAK89402.1| TATA-box factor binding protein [Cryptosporidium parvum Iowa II]
gi|323509817|dbj|BAJ77801.1| cgd8_2030 [Cryptosporidium parvum]
Length = 249
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 119/157 (75%), Gaps = 5/157 (3%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
P++QNI+++V+L C+LDL+ IA+ ARNAEYNPK+ AV+MR+R+P+ T L+F SG+++
Sbjct: 69 TPEIQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMI 128
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
TGA+ E D++L +K A+I QK GFP KF +FK++N++ + D KFPIRLEGL H F
Sbjct: 129 TGARLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDF 188
Query: 138 SSYEPELFPGLIYRM----VKPRIVLLIFVSGKVVLT 170
+YEPELFPGL+YR + VLL+FVSGKV++T
Sbjct: 189 CNYEPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVT 225
>gi|67611070|ref|XP_667132.1| TATA-binding protein [Cryptosporidium hominis TU502]
gi|54658235|gb|EAL36903.1| TATA-binding protein [Cryptosporidium hominis]
Length = 249
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 119/157 (75%), Gaps = 5/157 (3%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
P++QNI+++V+L C+LDL+ IA+ ARNAEYNPK+ AV+MR+R+P+ T L+F SG+++
Sbjct: 69 TPEIQNIIASVHLQCELDLRMIAISARNAEYNPKKVNAVVMRLRDPKCTGLLFRSGRLMI 128
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
TGA+ E D++L +K A+I QK GFP KF +FK++N++ + D KFPIRLEGL H F
Sbjct: 129 TGARLENDAKLGGKKMAKICQKSGFPKVKFTNFKMENIIATADCKFPIRLEGLAYDHRDF 188
Query: 138 SSYEPELFPGLIYRM----VKPRIVLLIFVSGKVVLT 170
+YEPELFPGL+YR + VLL+FVSGKV++T
Sbjct: 189 CNYEPELFPGLVYRYHPDNSPTKAVLLLFVSGKVIVT 225
>gi|328705141|ref|XP_001943046.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Acyrthosiphon pisum]
Length = 343
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 111/163 (68%)
Query: 8 PPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P + GG Q+QNIV N+GC LDL +I + N+EYNP+RF +IMR+R P T
Sbjct: 156 PQFIRCNKGGQSIQVQNIVCGANMGCPLDLVRIVMWTSNSEYNPQRFNGLIMRLRTPNVT 215
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
+L+F SGKM+ GAK + L RK A+I+++LG +F D+ + N+V + DV FPI L
Sbjct: 216 SLLFPSGKMIMQGAKDDRTGNLGCRKVAKILERLGHNVQFCDYTVHNIVCTWDVGFPIML 275
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E L H QF+S+EPE+FP LIYRMVKPR V L+FV+GKVVLT
Sbjct: 276 EELNTAHSQFTSFEPEVFPALIYRMVKPRAVFLMFVNGKVVLT 318
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ NIV T ++G + L+++ H++ + P+ F A+I R+ +PR L+F +GK+V TG
Sbjct: 260 VHNIVCTWDVGFPIMLEELNTAHSQFTSFEPEVFPALIYRMVKPRAVFLMFVNGKVVLTG 319
Query: 81 AKSEED 86
K++ D
Sbjct: 320 LKTKAD 325
>gi|145494864|ref|XP_001433426.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400543|emb|CAK66029.1| unnamed protein product [Paramecium tetraurelia]
Length = 208
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 119/156 (76%), Gaps = 6/156 (3%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++QN+VSTV+LG +L+L I+ AR AEYNPKRF+AVIMR+ P TTALIF SGKMVCT
Sbjct: 25 PKIQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLNNPSTTALIFQSGKMVCT 84
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS- 138
GAKSE+ S +AARKYA+IIQKLGFPA F +F IQN+V S D + PI+L+ Q+
Sbjct: 85 GAKSEDQSLVAARKYAKIIQKLGFPAVFKNFTIQNIVASFDFRKPIKLDEFT-KDQQYRP 143
Query: 139 --SYEPELFPGLIYRMV--KPRIVLLIFVSGKVVLT 170
YEPE+FPGLI+R + + +I LLIFVSG+ V+T
Sbjct: 144 VVQYEPEIFPGLIFRKITDQKKITLLIFVSGRCVIT 179
>gi|345312931|ref|XP_001513505.2| PREDICTED: TATA box-binding protein-like protein 2-like
[Ornithorhynchus anatinus]
Length = 170
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/170 (61%), Positives = 115/170 (67%), Gaps = 19/170 (11%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP PMTP + G+VPQLQNIVSTVNL CKLDLK+IAL ARNAEYNPKRFAAVIMRIRE
Sbjct: 2 TPLTPMTPASEASGTVPQLQNIVSTVNLACKLDLKRIALQARNAEYNPKRFAAVIMRIRE 61
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSR---LAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
PRTTALIFSSGKMVCTG++ + AR R + F+ + V
Sbjct: 62 PRTTALIFSSGKMVCTGSQKRPTGNVFLVDARDGDRALATFS-------FRDVSTVKISL 114
Query: 121 VKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ P R +YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 115 SRPPDR--------DDIPTYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 156
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 49 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSE 84
Y P+ F +I R+ +PR LIF SGK+V TG E
Sbjct: 126 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGESGE 161
>gi|242247621|ref|NP_001156189.1| TATA-box-binding protein-like [Acyrthosiphon pisum]
gi|239791994|dbj|BAH72388.1| ACYPI005546 [Acyrthosiphon pisum]
Length = 331
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 106/150 (70%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV N+GC LDL +I + N+EYNP RF +IMR+R P T+L+F SGKM+ G
Sbjct: 157 QVQNIVCGANMGCPLDLVRIVMWTSNSEYNPLRFNGLIMRLRTPNVTSLLFPSGKMIMQG 216
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
AK + L RK A+I+++LG KF D+ + N+V + DV FPI LE L H QF+S+
Sbjct: 217 AKDDRTGNLGCRKVAKILERLGHNVKFSDYTVHNIVCTWDVGFPIMLEELNTAHSQFTSF 276
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE+FP LIYRMVKPR V L+FV+GKVVLT
Sbjct: 277 EPEVFPALIYRMVKPRAVFLMFVNGKVVLT 306
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ NIV T ++G + L+++ H++ + P+ F A+I R+ +PR L+F +GK+V TG
Sbjct: 248 VHNIVCTWDVGFPIMLEELNTAHSQFTSFEPEVFPALIYRMVKPRAVFLMFVNGKVVLTG 307
Query: 81 AKSEED 86
K++ D
Sbjct: 308 LKTKSD 313
>gi|444728636|gb|ELW69085.1| TATA-box-binding protein [Tupaia chinensis]
Length = 313
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 143
EE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH QFSSYEPE
Sbjct: 201 EEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 260
Query: 144 LFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 261 LFPGLIYRMIKPRIVLLIFVSGKVVLT 287
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 228 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 287
Query: 80 GAK 82
GAK
Sbjct: 288 GAK 290
>gi|367044928|ref|XP_003652844.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
gi|347000106|gb|AEO66508.1| hypothetical protein THITE_2046631 [Thielavia terrestris NRRL 8126]
Length = 224
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 115/152 (75%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
PQ+QN+V+TVNL C+LDL IA ARN EY K+F A++MRIREPRTT L+F+SG+MV
Sbjct: 45 TPQIQNVVATVNLDCRLDLTLIAQQARNVEYRRKKFHALVMRIREPRTTTLVFASGRMVV 104
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKS E +RLAAR++AR IQK GF +F DF +QN VGS FPIRLEG+ + +++
Sbjct: 105 AGAKSAELARLAARRHARAIQKCGFRTRFRDFAVQNFVGSAACGFPIRLEGIARQYWEWA 164
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+EPE+FPGL++ + KP + L+F +GKVVLT
Sbjct: 165 RHEPEIFPGLVFTVQKPSLKCLVFTTGKVVLT 196
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN V + G + L+ IA + A + P+ F ++ +++P L+F++GK+V TG
Sbjct: 138 VQNFVGSAACGFPIRLEGIARQYWEWARHEPEIFPGLVFTVQKPSLKCLVFTTGKVVLTG 197
Query: 81 AKSEED 86
AK E+D
Sbjct: 198 AKCEDD 203
>gi|367033977|ref|XP_003666271.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
gi|347013543|gb|AEO61026.1| hypothetical protein MYCTH_2310794 [Myceliophthora thermophila ATCC
42464]
Length = 242
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 116/152 (76%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
VP +QN+V+T +L C+LDL+ IA HARN EYN ++F A++MRIREPRTT L+F+SG+MV
Sbjct: 51 VPTIQNVVATASLECRLDLQAIAQHARNVEYNRRKFHALVMRIREPRTTTLVFASGRMVV 110
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKS +RLAAR++AR IQK GFP + DF++QN VGS F +RLE + + Q +
Sbjct: 111 TGAKSAGLARLAARRHARAIQKCGFPTRLADFRVQNFVGSAACGFLVRLERISHRYWQSA 170
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+EPELFPGL+Y MV+P + L+F +GKVVLT
Sbjct: 171 RHEPELFPGLVYTMVRPSLKCLVFTTGKVVLT 202
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN V + G + L++I+ + ++A + P+ F ++ + P L+F++GK+V T
Sbjct: 143 RVQNFVGSAACGFLVRLERISHRYWQSARHEPELFPGLVYTMVRPSLKCLVFTTGKVVLT 202
Query: 80 GAKSEED 86
GAK ED
Sbjct: 203 GAKKRED 209
>gi|410989830|ref|XP_004001158.1| PREDICTED: TATA box-binding protein-like protein 2-like [Felis
catus]
Length = 135
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 85/87 (97%)
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 143
EE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+FPIRLEGLVLTH QFSSYEPE
Sbjct: 24 EEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPE 83
Query: 144 LFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 84 LFPGLIYRMVKPRIVLLIFVSGKVVLT 110
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 51 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 110
Query: 80 GAKSEED 86
GAK +
Sbjct: 111 GAKERSE 117
>gi|392522721|gb|AFM78149.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 97/114 (85%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIFSSG+MV TG KS +S LA RK+A I++++GF PA LDF
Sbjct: 1 RRFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H FSSYEPELFPGLIYR+V+PR+VLLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ + H + Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|1078776|pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 116/151 (76%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++ N+VS LG KL+L+KI A NA YNPKRFA IMRI P++TALIF +GK+VCT
Sbjct: 53 PEIVNVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAIMRISSPKSTALIFQTGKIVCT 112
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
G +S E+S++A++KYA+II+K+G+P + +F +QN+VGSCDVKF I L LV + F
Sbjct: 113 GTRSIEESKIASKKYAKIIKKIGYPIHYSNFNVQNIVGSCDVKFQIALRTLVDSDLAFCQ 172
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGL+YRM P++ LL+F +GKVVLT
Sbjct: 173 YEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 203
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + ++ ++ L+ + +Y P+ F ++ R+ P+ T L+FS+GK+V T
Sbjct: 144 NVQNIVGSCDVKFQIALRTLVDSDLAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLT 203
Query: 80 GAKSEEDSRLAARK 93
GAK EE LA +
Sbjct: 204 GAKDEESLNLAYKN 217
>gi|281344600|gb|EFB20184.1| hypothetical protein PANDA_019435 [Ailuropoda melanoleuca]
Length = 89
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 85/88 (96%)
Query: 83 SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
SEE SRLAARKYAR++QKLGFPA+FLDFKIQNMVGSCDV+F IRLEGLVLTH QFSSYEP
Sbjct: 1 SEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEP 60
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
ELFPGLIYRMVKPRIVLLIFVSGKVVLT
Sbjct: 61 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 88
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 29 KIQNMVGSCDVRFAIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 88
Query: 80 G 80
G
Sbjct: 89 G 89
>gi|392522653|gb|AFM78115.1| TATA box-binding protein, partial [Skeletonema costatum]
Length = 114
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 97/114 (85%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SG+MV TG KS +S LA RK+A I++++GF PA LDF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGRMVVTGTKSTHNSALATRKFAYILERVGFQPAGMLDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H FSSYEPELFPGLIYR+V+PR+VLLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ + H + Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVYAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|171691522|ref|XP_001910686.1| hypothetical protein [Podospora anserina S mat+]
gi|170945709|emb|CAP71822.1| unnamed protein product [Podospora anserina S mat+]
Length = 223
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 117/167 (70%), Gaps = 14/167 (8%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G +P+LQN V TVNL C++DL +A ARN EY P+RF AVIMRIR+PRTTALIF++G+
Sbjct: 25 GWPIPKLQNFVVTVNLDCRIDLNYLAQRARNVEYRPRRFNAVIMRIRDPRTTALIFATGR 84
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLV---L 132
MV TGAKSE +RLAA+K+ +QK GF KF DF +QN++GS +V F IRLEGL +
Sbjct: 85 MVVTGAKSEALARLAAKKHTYALQKCGFTPKFRDFTVQNIIGSANVGFNIRLEGLANKYV 144
Query: 133 THGQFSSYEPELFPGLIYRMV-------KPRI--VLLIFVSGKVVLT 170
T G +S+ PE+FPGL ++ PR LLIF +GK+V+T
Sbjct: 145 TVG--ASFVPEIFPGLSFKQYLGYRADGTPRSCPTLLIFTTGKIVVT 189
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 20/102 (19%)
Query: 22 LQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIR-------EPRT--TALI 70
+QNI+ + N+G + L+ +A A + P+ F + + PR+ T LI
Sbjct: 121 VQNIIGSANVGFNIRLEGLANKYVTVGASFVPEIFPGLSFKQYLGYRADGTPRSCPTLLI 180
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKI 112
F++GK+V TGAK+EED R A +AR+ +P F DF+
Sbjct: 181 FTTGKIVVTGAKTEEDFRAA---FARV-----YPL-FFDFRF 213
>gi|392522723|gb|AFM78150.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 96/114 (84%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDF 110
+RFAAVIMR+REPR TALIFSSG+MV TG KS +S LA RK+A I++++GF A LDF
Sbjct: 1 RRFAAVIMRLREPRATALIFSSGRMVVTGTKSTHNSALATRKFAYILERVGFQLAGMLDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H FSSYEPELFPGLIYR+V+PR+VLLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ + H + Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGLVFAHPTFSSYEPELFPGLIYRLVQPRVVLLIFVS 114
>gi|440294161|gb|ELP87178.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++ N+VST L +LDL+KI ARNAEYNPKRFA IMRI P++TALIF +GK+VCT
Sbjct: 52 PEIVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCT 111
Query: 80 GAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
G +S E+S++AA+KYA+II+K+G+ +F +F +QN+VGSCDVKF I L L ++
Sbjct: 112 GTRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMC 171
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGL++RM +P++ LL+F +GKVVLT
Sbjct: 172 QYEPEVFPGLVFRMTQPKVTLLVFSTGKVVLT 203
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAE---YNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+QNIV + ++ ++ L+ +L+ N + Y P+ F ++ R+ +P+ T L+FS+GK+V
Sbjct: 144 NVQNIVGSCDVKFQISLR--SLYDSNTDMCQYEPEVFPGLVFRMTQPKVTLLVFSTGKVV 201
Query: 78 CTGAKSEEDSRLAARK 93
TGAK +E A K
Sbjct: 202 LTGAKDDESLNTAYTK 217
>gi|440298942|gb|ELP91557.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 233
Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/152 (56%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++ N+VST L +LDL+KI ARNAEYNPKRFA IMRI P++TALIF +GK+VCT
Sbjct: 52 PEIVNVVSTFQLNQQLDLRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGKIVCT 111
Query: 80 GAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
G +S E+S++AA+KYA+II+K+G+ +F +F +QN+VGSCDVKF I L L ++
Sbjct: 112 GTRSIEESKIAAKKYAKIIKKIGYNEVRFSNFNVQNIVGSCDVKFQISLRSLYDSNTDMC 171
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGL++RM +P++ LL+F +GKVVLT
Sbjct: 172 QYEPEVFPGLVFRMTQPKVTLLVFSTGKVVLT 203
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAE---YNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+QNIV + ++ ++ L+ +L+ N + Y P+ F ++ R+ +P+ T L+FS+GK+V
Sbjct: 144 NVQNIVGSCDVKFQISLR--SLYDSNTDMCQYEPEVFPGLVFRMTQPKVTLLVFSTGKVV 201
Query: 78 CTGAKSEEDSRLAARK 93
TGAK +E A K
Sbjct: 202 LTGAKDDESLNTAYTK 217
>gi|392522761|gb|AFM78169.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 93/113 (82%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFK 111
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LAA+++A II+K+GF + LDFK
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
+QNMVG+ DV FP+RLEGLV H +SSYEPELFPGLIYR+ PR+V LIFVS
Sbjct: 61 VQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V TV++G + L+ + H+ + Y P+ F +I R+ PR LIF S
Sbjct: 60 KVQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|298710178|emb|CBJ26253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 358
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 113/161 (70%), Gaps = 14/161 (8%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI---REPRTTALIFSSGKMVCTG 80
N+ +T ++ C +DLK + + ARNAEYNPKRF+A I+R+ EP+ TAL+F +GK+V TG
Sbjct: 137 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTG 196
Query: 81 AKSEEDSRLAARKYARIIQKL----GFPAKFLDF------KIQNMVGSCDVKFPIRLEGL 130
++S A + +ARI+ KL G P+ ++F ++QNMV + DV FPIRLEGL
Sbjct: 197 SRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGL 256
Query: 131 VLTH-GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
V ++ G F +YEPELFPGLIYRM P+I LIFVSGKVVLT
Sbjct: 257 VASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLT 297
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNA--EYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QN+V+T ++G + L+ + + Y P+ F +I R+++P+ LIF SGK+V
Sbjct: 237 RVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVL 296
Query: 79 TGAKSEED 86
TGAKS +
Sbjct: 297 TGAKSAQQ 304
>gi|390986539|gb|AFM35789.1| hypothetical protein, partial [Oryza eichingeri]
Length = 88
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/88 (86%), Positives = 83/88 (94%)
Query: 53 RFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKI 112
RFAAVIMRIREP+TTALIF+SGKMVCTGAKSE+ S+LAARKYARI+QKLGFPAKF DFKI
Sbjct: 1 RFAAVIMRIREPKTTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGFPAKFKDFKI 60
Query: 113 QNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
QN+VGSCDVKFPIRLEGL +HG FSSY
Sbjct: 61 QNIVGSCDVKFPIRLEGLAYSHGAFSSY 88
>gi|392522763|gb|AFM78170.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 93/113 (82%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFK 111
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LAA+++A II+K+GF + LDFK
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
+QN+VG+ DV FP+RLEGLV H +SSYEPELFPGLIYR+ PR+V LIFVS
Sbjct: 61 VQNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ + H+ + Y P+ F +I R+ PR LIF S
Sbjct: 60 KVQNIVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|392522759|gb|AFM78168.1| TATA box-binding protein, partial [uncultured diatom]
Length = 113
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 92/113 (81%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFK 111
+RFAAVIMR+REPR ALIF+SGKM TG KS +S LAA+++A II+K+GF + LDFK
Sbjct: 1 RRFAAVIMRLREPRAAALIFASGKMCVTGTKSTHNSSLAAKRFAYIIEKVGFKSTGLDFK 60
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
+QNMVG+ DV FP+RLEGLV H +SSYEPELFPGLIYR+ PR+V LIFVS
Sbjct: 61 VQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V TV++G + L+ + H+ + Y P+ F +I R+ PR LIF S
Sbjct: 60 KVQNMVGTVDVGFPVRLEGLVYAHSMYSSYEPELFPGLIYRLGIPRVVFLIFVS 113
>gi|392522651|gb|AFM78114.1| TATA box-binding protein, partial [Chaetoceros affinis]
gi|392522765|gb|AFM78171.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522771|gb|AFM78174.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522773|gb|AFM78175.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522777|gb|AFM78177.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 96/114 (84%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS ++ LA++K+A II+K+GF A +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+V+PR+V+LIFVS
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV T ++G + L+ + H+ A Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|326431087|gb|EGD76657.1| TATA box binding protein [Salpingoeca sp. ATCC 50818]
Length = 166
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 16 GGSVPQLQNIVSTVNLG-CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
S P + NIV+T +L +L L++IA A+N+EYNPKR++A+IMRI+EP TALIFS+G
Sbjct: 8 ANSSPNIVNIVATAHLSRTQLKLEEIAEKAKNSEYNPKRYSAIIMRIKEPSATALIFSTG 67
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH 134
K+V GAKSEE + AAR++A+ I K G + KI N+VG D+ F + L+ L + H
Sbjct: 68 KVVIMGAKSEEAAHAAARQFAQNITKAGTRVSLREIKIHNVVGRVDIGFKLHLDNLHVEH 127
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+S+Y+PE FPGL YRM +P +VLLIF SGK+VLT
Sbjct: 128 PAWSTYDPESFPGLTYRMQEPDVVLLIFHSGKIVLT 163
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ N+V V++G KL L + + H + Y+P+ F + R++EP LIF SGK+V T
Sbjct: 104 KIHNVVGRVDIGFKLHLDNLHVEHPAWSTYDPESFPGLTYRMQEPDVVLLIFHSGKIVLT 163
Query: 80 GAK 82
AK
Sbjct: 164 KAK 166
>gi|392522775|gb|AFM78176.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 96/114 (84%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS ++ LA++K+A II+++GF A +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEEVGFETAPEVDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+V+PR+V+LIFVS
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV T ++G + L+ + H+ A Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522767|gb|AFM78172.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAV MR+REPR TALIF+SGKM TG KS ++ LA++K+A II+K+GF A +DF
Sbjct: 1 RRFAAVTMRLREPRATALIFASGKMCATGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+V+PR+V+LIFVS
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV T ++G + L+ + H+ A Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTADVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|392522769|gb|AFM78173.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 96/114 (84%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS ++ LA++K+A II+K+GF A +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSTHNASLASKKFALIIEKVGFKTAPEVDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPI+LEGLV H F+SYEPELFPGLIYR+V+PR+V+LIFVS
Sbjct: 61 KVQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV T ++G + L+ + H+ A Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTADVGFPIQLEGLVYAHSTFASYEPELFPGLIYRLVQPRVVILIFVS 114
>gi|348669793|gb|EGZ09615.1| hypothetical protein PHYSODRAFT_522103 [Phytophthora sojae]
Length = 216
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 104/137 (75%)
Query: 34 KLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARK 93
K++++K+AL RNA+Y P+ F+A++MR +EPR T L++ SGK V GA S +DS+LAA K
Sbjct: 42 KVNIEKLALLVRNADYAPRSFSALVMRFQEPRATVLVYRSGKFVVIGATSVDDSKLAADK 101
Query: 94 YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMV 153
I +K+ FP+ F ++N+VGS DV F IRLEGL H +FS+YEPE+FPGLIYRM+
Sbjct: 102 LVSIFKKVSFPSDCSPFTVRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRML 161
Query: 154 KPRIVLLIFVSGKVVLT 170
+P+ LLIF+SGK+V+T
Sbjct: 162 RPKCTLLIFISGKIVIT 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V + ++G ++ L+ +A H R + Y P+ F +I R+ P+ T LIF SGK+V TG
Sbjct: 120 VRNVVGSSDVGFRIRLEGLARDHLRFSTYEPEMFPGLIYRMLRPKCTLLIFISGKIVITG 179
Query: 81 AKS 83
+S
Sbjct: 180 CES 182
>gi|392522739|gb|AFM78158.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFTSYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522747|gb|AFM78162.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHSSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVSFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522731|gb|AFM78154.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TAL+F+SGK V TG KS +S LA +K A I++++GF PA +++F
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKTVITGTKSSHNSSLATKKIAYILERIGFQPASYINF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEG+ H FSSYEPELFPGLIYR+V+PR+ LLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ +A H + Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVCLLIFVS 114
>gi|392522735|gb|AFM78156.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522757|gb|AFM78167.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|301113196|ref|XP_002998368.1| TATA-box-binding protein [Phytophthora infestans T30-4]
gi|262111669|gb|EEY69721.1| TATA-box-binding protein [Phytophthora infestans T30-4]
Length = 220
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 103/137 (75%)
Query: 34 KLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARK 93
++D+KK+AL RNA+Y P+ F+A++MR + PR T L++ SGK V GA S D++LAA K
Sbjct: 39 RVDIKKLALLVRNADYAPRGFSALVMRFQAPRATVLLYRSGKFVVIGATSVADAKLAAEK 98
Query: 94 YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMV 153
I++K+ FP+ F I+N+VGS DV F +RLEGL H +FS+YEPELFPGLIYRM+
Sbjct: 99 LVSILKKVSFPSDNSPFTIRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIYRML 158
Query: 154 KPRIVLLIFVSGKVVLT 170
+P+ LLIF+SGK+V+T
Sbjct: 159 RPKCTLLIFISGKLVIT 175
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V + ++ ++ L+ +A H R + Y P+ F +I R+ P+ T LIF SGK+V TG
Sbjct: 117 IRNVVGSADVCFRVRLEGLARDHLRFSTYEPELFPGLIYRMLRPKCTLLIFISGKLVITG 176
Query: 81 AKSEEDSRLA 90
+S D A
Sbjct: 177 CESSADGERA 186
>gi|403220982|dbj|BAM39115.1| transcription initiation factor [Theileria orientalis strain
Shintoku]
Length = 276
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 114/156 (73%), Gaps = 4/156 (2%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+P +QNIV++V+LG +LDL++IA+ RNAEYNPK+F A+++R++ P+ T LIF +G+++
Sbjct: 97 IPMVQNIVASVHLGQELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRIII 156
Query: 79 TGAKSEEDSRLAARKYARIIQK-LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
TG+K+ ED++L A++ A++I+K LG KF +FKI+N++ + + PIRLE H +
Sbjct: 157 TGSKTIEDTKLGAKRMAKMIRKELGADLKFNNFKIENIIATFNCNVPIRLEVFSQEHKEL 216
Query: 138 SSYEPELFPGLIYRM---VKPRIVLLIFVSGKVVLT 170
S+YEPE F GL+YR VLLIFVSG V++T
Sbjct: 217 SNYEPEFFAGLVYRCRISESSEAVLLIFVSGNVIIT 252
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTA---LIFSSGKM 76
+++NI++T N + L+ + H + Y P+ FA ++ R R ++ LIF SG +
Sbjct: 190 KIENIIATFNCNVPIRLEVFSQEHKELSNYEPEFFAGLVYRCRISESSEAVLLIFVSGNV 249
Query: 77 VCTGAKSEED 86
+ TG KS +
Sbjct: 250 IITGCKSAHE 259
>gi|392522745|gb|AFM78161.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P +V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ A Y P+ F +I R+ EP L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPMVVFLVFVS 114
>gi|119601082|gb|EAW80676.1| TATA box binding protein like 2, isoform CRA_b [Homo sapiens]
Length = 113
Score = 158 bits (400), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/82 (90%), Positives = 79/82 (96%)
Query: 89 LAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGL 148
+ RKYAR++QKLGFPA+FLDFKIQNMVGSCDV+FPIRLEGLVLTH QFSSYEPELFPGL
Sbjct: 7 ITQRKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGL 66
Query: 149 IYRMVKPRIVLLIFVSGKVVLT 170
IYRMVKPRIVLLIFVSGKVVLT
Sbjct: 67 IYRMVKPRIVLLIFVSGKVVLT 88
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 29 KIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 88
Query: 80 GAKSEED 86
GAK +
Sbjct: 89 GAKERSE 95
>gi|300120388|emb|CBK19942.2| unnamed protein product [Blastocystis hominis]
Length = 199
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/150 (54%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
NIVSTVN+ +++L ++ RN EYNPKRF A+IMRIREP+ TAL+F SGK+V G K
Sbjct: 25 SNIVSTVNMKKEINLPEVVDKLRNTEYNPKRFDAMIMRIREPKCTALVFKSGKVVLAGTK 84
Query: 83 SEEDSRLAARKYARIIQKLGFPAKFLDFK--IQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
S +D+ A R+ I+ + K D K I NMV D KFPIRLEGL + + + ++Y
Sbjct: 85 STKDTEAAGRRVVDILSRFTGGNKSDDTKPIIHNMVAVGDFKFPIRLEGLSIEYLESTTY 144
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPELF GLIYRM P +VLLIFVSGKVV+T
Sbjct: 145 EPELFSGLIYRMKNPDVVLLIFVSGKVVVT 174
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
P + N+V+ + + L+ +++ + + Y P+ F+ +I R++ P LIF SGK+V
Sbjct: 114 PIIHNMVAVGDFKFPIRLEGLSIEYLESTTYEPELFSGLIYRMKNPDVVLLIFVSGKVVV 173
Query: 79 TGAKSEEDSRLAARKYARII 98
TGAK E D R A RK + +I
Sbjct: 174 TGAKDESDIRQAFRKISPLI 193
>gi|392522755|gb|AFM78166.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGL H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ +A H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLAYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522727|gb|AFM78152.1| TATA box-binding protein, partial [uncultured diatom]
gi|392522729|gb|AFM78153.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TAL+F+SGK+V TG KS +S LA +K A I++++GF PA +++F
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKLVITGTKSSHNSSLATKKIAYILERVGFQPASYINF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEG+ H FSSYEPELFPGLIYR+ +PR+V LIFVS
Sbjct: 61 KMQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ +A H + Y P+ F +I R+ EPR LIF S
Sbjct: 61 KMQNIVGTVDVGFPIRLEGVAFGHPTFSSYEPELFPGLIYRLFEPRVVFLIFVS 114
>gi|392522725|gb|AFM78151.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TAL+F+SGK+V TG KS +S LA +K A I++++GF P+ +++F
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKIVITGTKSSHNSGLATKKIAYILERVGFRPSSYINF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEG+ H FSSYEPELFPGLIYR+ +PR+VLLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ +A H + Y P+ F +I R+ +PR LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLGQPRVVLLIFVS 114
>gi|392522737|gb|AFM78157.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVI R+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522741|gb|AFM78159.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLE LV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+++ H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLERLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522743|gb|AFM78160.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHSPTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|392522753|gb|AFM78165.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/114 (65%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDETDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P+ V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHFTFASYEPELFPGLIYRLYEPKAVFLVFVS 114
>gi|294939318|ref|XP_002782410.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894016|gb|EER14205.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 273
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 21/172 (12%)
Query: 20 PQLQNIVSTVNLGC-------------------KLDLKKIALHARNAEYNPKRFAAVIMR 60
P L+N++++V LG +DLKK+A ARNAEYNP++ AV++R
Sbjct: 78 PVLENVIASVELGIINSTHSTTTTGGSSSSSSHLIDLKKVAFKARNAEYNPRKVNAVVIR 137
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG-FP-AKFLDFKIQNMVGS 118
R+P+ TA+++ +GK++ TG+ SEE ++ AA+K A+I+ K G +P A+F FKI+NMV S
Sbjct: 138 FRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKVAKIVIKSGAYPQARFRRFKIENMVAS 197
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLE L H + SYEPEL+PGL++R+ +P++ LLIFVSGK+V T
Sbjct: 198 ADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVALLIFVSGKIVFT 249
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 17 GSVPQ-------LQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTA 68
G+ PQ ++N+V++ ++ + L+ +A R+ Y P+ + ++ R+ EP+
Sbjct: 179 GAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVAL 238
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARK 93
LIF SGK+V TGAK+ +D A R
Sbjct: 239 LIFVSGKIVFTGAKNRDDITNAFRN 263
>gi|392522749|gb|AFM78163.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFA VI R+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFATVITRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDGIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FPIRLEGLV H F+SYEPELFPGLIYR+ +P++V L+FVS
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QN+V T+++G + L+ + H+ A Y P+ F +I R+ EP+ L+F S
Sbjct: 61 KVQNMVGTLDVGFPIRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVFVS 114
>gi|294939316|ref|XP_002782409.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239894015|gb|EER14204.1| TATA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 302
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 119/172 (69%), Gaps = 21/172 (12%)
Query: 20 PQLQNIVSTVNLGC-------------------KLDLKKIALHARNAEYNPKRFAAVIMR 60
P L+N++++V LG +DLKK+A ARNAEYNP++ AV++R
Sbjct: 107 PVLENVIASVELGIINSTHSTTTTGGSSSSSSHLIDLKKVAFKARNAEYNPRKVNAVVIR 166
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG-FP-AKFLDFKIQNMVGS 118
R+P+ TA+++ +GK++ TG+ SEE ++ AA+K A+I+ K G +P A+F FKI+NMV S
Sbjct: 167 FRDPKATAMLYGTGKVMVTGSNSEETAKDAAKKVAKIVIKSGAYPQARFRRFKIENMVAS 226
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
DV+FPIRLE L H + SYEPEL+PGL++R+ +P++ LLIFVSGK+V T
Sbjct: 227 ADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVALLIFVSGKIVFT 278
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 17 GSVPQ-------LQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTA 68
G+ PQ ++N+V++ ++ + L+ +A R+ Y P+ + ++ R+ EP+
Sbjct: 208 GAYPQARFRRFKIENMVASADVRFPIRLEALAYEHRSYCSYEPELYPGLVFRLFEPKVAL 267
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARK 93
LIF SGK+V TGAK+ +D A R
Sbjct: 268 LIFVSGKIVFTGAKNRDDITNAFRN 292
>gi|156083957|ref|XP_001609462.1| TATA-box binding protein [Babesia bovis T2Bo]
gi|154796713|gb|EDO05894.1| TATA-box binding protein [Babesia bovis]
Length = 277
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 114/155 (73%), Gaps = 4/155 (2%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P +QNIV++V+LG ++DL++IA+ RNAEYNP++F A+I+R++ PR T L+F +G+++ T
Sbjct: 99 PVVQNIVASVHLGNEIDLREIAISTRNAEYNPRKFNALILRMQNPRCTGLVFRTGRLIVT 158
Query: 80 GAKSEEDSRLAARKYARIIQK-LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
G K+ E +RL A++ A+++++ LG +F DFKI+N++ + + PIRLE L H F
Sbjct: 159 GCKTVESARLGAKRIAKMVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFC 218
Query: 139 SYEPELFPGLIYRMV---KPRIVLLIFVSGKVVLT 170
+YEPE+F GL+YR+ K VLL+FVSG V++T
Sbjct: 219 NYEPEIFAGLVYRIAIPCKSEAVLLVFVSGNVIVT 253
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 10 MTPVDMGGSVP----QLQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREP 64
M ++GG + +++NI++T N + L+++ H Y P+ FA ++ RI P
Sbjct: 176 MVRRELGGGIQFNDFKIENIIATFNCNVPIRLERLYEEHKLFCNYEPEIFAGLVYRIAIP 235
Query: 65 ---RTTALIFSSGKMVCTGAKSEEDSRLAARKYARII 98
L+F SG ++ TG +S ED L R+ A I+
Sbjct: 236 CKSEAVLLVFVSGNVIVTGCRSPEDIYLIYRRMAPIL 272
>gi|392522733|gb|AFM78155.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TAL+F+SGK V TG KS ++ LA +K A I++++GF P + F
Sbjct: 1 RRFAAVIMRLREPRATALVFASGKTVITGTKSSHNASLATKKIAYILERVGFQPESHIHF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QN+VG+ DV FPIRLEG+ H FSSYEPELFPGLIYR+V+PR+ LLIFVS
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
++QNIV TV++G + L+ +A H + Y P+ F +I R+ +PR + LIF S
Sbjct: 61 KVQNIVGTVDVGFPIRLEGVAFAHPTFSSYEPELFPGLIYRLVQPRVSLLIFVS 114
>gi|328794393|ref|XP_001123347.2| PREDICTED: TATA-box-binding protein-like, partial [Apis mellifera]
Length = 169
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/114 (66%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Query: 9 PMTPVDMGGSV--PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRT 66
PMTP + V P LQN+VSTVNLG +L L I RN+EYNP RF +IMRIR PR
Sbjct: 53 PMTPANSTKEVIEPCLQNVVSTVNLGIELPLMYINTRTRNSEYNPARFMGLIMRIRNPRA 112
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCD 120
TALIF SGK+VCTGA+SEEDS LA RK+ARIIQKLGF AKF +FKIQN+V +CD
Sbjct: 113 TALIFHSGKIVCTGARSEEDSYLATRKFARIIQKLGFAAKFYNFKIQNIVATCD 166
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+QN+V + ++ + L + T + S Y P F GLI R+ PR LIF SGK+V T
Sbjct: 68 LQNVVSTVNLGIELPLM-YINTRTRNSEYNPARFMGLIMRIRNPRATALIFHSGKIVCT 125
>gi|71033019|ref|XP_766151.1| transcription initiation factor TFIID [Theileria parva strain
Muguga]
gi|68353108|gb|EAN33868.1| transcription initiation factor TFIID, putative [Theileria parva]
Length = 222
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+VP +QNIV++V+LG +LDL++IA+ RNAEYNPK+F A+++R++ P+ T LIF +G+++
Sbjct: 42 NVPMVQNIVASVHLGEELDLREIAISTRNAEYNPKKFNALVLRMQNPKCTGLIFRTGRII 101
Query: 78 CTGAKSEEDSRLAARKYARIIQK-LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TG+K+ ED+RL ++ A++I+K G KF +FKI+N++ + PIRLE H
Sbjct: 102 ITGSKTIEDTRLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKD 161
Query: 137 FSSYEPELFPGLIYRM---VKPRIVLLIFVSGKVVLT 170
+YEPE F GL+YR + VLLIFVSG V++T
Sbjct: 162 LCNYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIIT 198
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 11 TPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIR---EPRT 66
T +D+ + +++NI++T + + L+ + ++ Y P+ FA ++ R R E
Sbjct: 126 TGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYEPEFFAGLVYRCRINEESEA 185
Query: 67 TALIFSSGKMVCTGAKSEED 86
LIF SG ++ TG KS ++
Sbjct: 186 VLLIFVSGNVIITGCKSAQE 205
>gi|392522751|gb|AFM78164.1| TATA box-binding protein, partial [uncultured diatom]
Length = 114
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF-PAKFLDF 110
+RFAAVIMR+REPR TALIF+SGKM TG KS +S LA++K+A I+ K+GF P +DF
Sbjct: 1 RRFAAVIMRLREPRATALIFASGKMCVTGTKSVHNSTLASKKFAYIVDKVGFKPKDEIDF 60
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVS 164
K+QNMVG+ DV FP RLEGLV H F+SYEPELFPGLIYR+ +P++V L+ VS
Sbjct: 61 KVQNMVGTLDVGFPNRLEGLVYAHSTFASYEPELFPGLIYRLYEPKVVFLVSVS 114
>gi|145509947|ref|XP_001440912.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408140|emb|CAK73515.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 108/156 (69%), Gaps = 13/156 (8%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++QN+VSTV+LG +L+L I+ AR AEYNPKRF+AVIMR+ P TTALIF SGKMVCT
Sbjct: 25 PKIQNVVSTVDLGTELNLVVISNGARMAEYNPKRFSAVIMRLSNPSTTALIFQSGKMVCT 84
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKSE+ S +AARKYA+II KLGFP L +Q + +L Q+ S
Sbjct: 85 GAKSEDQSLIAARKYAKIINKLGFPVVTL---LQASTSESQSN-----QTNLLKDQQYRS 136
Query: 140 ---YEPELFPGLIYRMV--KPRIVLLIFVSGKVVLT 170
YEPE+FPGLI+R + + +I LLIFVSG+ V+T
Sbjct: 137 VVQYEPEIFPGLIFRKITDQKKITLLIFVSGRCVIT 172
>gi|326432022|gb|EGD77592.1| TATA-box-binding protein [Salpingoeca sp. ATCC 50818]
Length = 271
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 122/209 (58%), Gaps = 57/209 (27%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP-------------- 64
+P++ N+V+TVNLG LDLK IA+HARNA+Y P RF+A++MRIR+
Sbjct: 39 LPEIVNVVATVNLGLTLDLKYIAMHARNAQYTPNRFSAMVMRIRDEEKQNTSHIASRRRT 98
Query: 65 ----RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL------------------- 101
+ TAL+F++GK++CTG K E++R AA+K+A+II+K+
Sbjct: 99 GRPMKATALVFATGKLICTGTKGPEEARAAAKKFAKIIRKILHLERAEKAAAREAATAML 158
Query: 102 --------------------GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
+F FK+QNMV CD +FPIRLE L + FS+YE
Sbjct: 159 TEHGGQRDHDDEEEEGEQEEAARVRFDGFKVQNMVAKCDCRFPIRLEALQAHYPVFSTYE 218
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PELFPGL++RM +PR V+L FVSGK+V+T
Sbjct: 219 PELFPGLVFRMAEPRCVVLCFVSGKLVIT 247
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARN---AEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
++QN+V+ + C+ ++ AL A + Y P+ F ++ R+ EPR L F SGK+V
Sbjct: 188 KVQNMVAKCD--CRFPIRLEALQAHYPVFSTYEPELFPGLVFRMAEPRCVVLCFVSGKLV 245
Query: 78 CTGAKSEE 85
TGAKS E
Sbjct: 246 ITGAKSRE 253
>gi|84998870|ref|XP_954156.1| transcription initiation factor (TBP ) [Theileria annulata]
gi|65305154|emb|CAI73479.1| transcription initiation factor (TBP homologue), putative
[Theileria annulata]
Length = 222
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
S+P +QNIV++V+LG +LDL++IA+ RNAEYNP++F A+++R++ P+ T LIF +G+++
Sbjct: 42 SIPVVQNIVASVHLGEELDLREIAISTRNAEYNPRKFNALVLRMQNPKCTGLIFRTGRII 101
Query: 78 CTGAKSEEDSRLAARKYARIIQK-LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TG+K+ ED++L ++ A++I+K G KF +FKI+N++ + PIRLE H
Sbjct: 102 ITGSKTIEDAKLGGKRMAKMIRKETGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKD 161
Query: 137 FSSYEPELFPGLIYRM---VKPRIVLLIFVSGKVVLT 170
+YEPE F GL+YR + VLLIFVSG V++T
Sbjct: 162 LCNYEPEFFAGLVYRCRINEESEAVLLIFVSGNVIIT 198
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 11 TPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIR---EPRT 66
T +D+ + +++NI++T + + L+ + ++ Y P+ FA ++ R R E
Sbjct: 126 TGLDLKFNNFKIENIIATFSCNVPIRLEVFSQEHKDLCNYEPEFFAGLVYRCRINEESEA 185
Query: 67 TALIFSSGKMVCTGAKSEED 86
LIF SG ++ TG KS ++
Sbjct: 186 VLLIFVSGNVIITGCKSPQE 205
>gi|326432016|gb|EGD77586.1| hypothetical protein PTSG_08683 [Salpingoeca sp. ATCC 50818]
Length = 185
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 97/151 (64%), Gaps = 39/151 (25%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++ NIV+TVNL LDLK I L RNAEY+PKRF+AV+MRIR PRTTAL+F++GK++CT
Sbjct: 49 PEVVNIVATVNLATHLDLKHITLSVRNAEYSPKRFSAVVMRIRSPRTTALVFATGKLICT 108
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
GAKS ED+ + ARK+A+II+K+GF
Sbjct: 109 GAKSTEDAYVGARKFAKIIKKIGF------------------------------------ 132
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LFPGLI+RM PR+V+LIFVSGK+V+T
Sbjct: 133 ---SLFPGLIFRMADPRVVVLIFVSGKLVIT 160
>gi|348523966|ref|XP_003449494.1| PREDICTED: TATA box-binding protein-like protein 2-like
[Oreochromis niloticus]
Length = 319
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 3 PSTPGPPMTPVDM----GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVI 58
P PG P P + VP + N++STV+LGC LDLK IA N EY P+ F +I
Sbjct: 100 PVNPGTPADPETLKEKPSNLVPVICNVISTVDLGCSLDLKFIARRMWNVEYKPQTFTGII 159
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
RIREP T IF SGK++ G KS E+SRLAARK+AR +QK GFP +FL+FKIQN+V
Sbjct: 160 ARIREPEATVTIFQSGKIISLGTKSVEESRLAARKFARKLQKFGFPVRFLNFKIQNIVAF 219
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMV 153
C FP+ L L H SYEPE++ GL+ +
Sbjct: 220 CQT-FPVDLAELQKVHRGQCSYEPEMYNGLVLDQI 253
>gi|428671167|gb|EKX72085.1| transcription factor TFIID or TATA-binding protein, TBP, putative
[Babesia equi]
Length = 304
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 110/158 (69%), Gaps = 5/158 (3%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
S P +QNIV++V+LG +LDL++IA+ RNAEYNPK+F A+++R+ P+ T LIF +G+++
Sbjct: 123 STPVVQNIVASVHLGRELDLREIAISTRNAEYNPKKFNALVLRMHNPKCTGLIFRTGRII 182
Query: 78 CTGAKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
TG+++ E +RL A++ A+II+++ G F +FKI+N++ + + PIRLE L H
Sbjct: 183 ITGSRTTEAARLGAKRMAKIIRRVLGGDDFAFRNFKIENIIATFNCNVPIRLEVLSSEHE 242
Query: 136 QFSSYEPELFPGLIYRMV---KPRIVLLIFVSGKVVLT 170
+YEPE F GL++R VLLIFVSG V++T
Sbjct: 243 DLCNYEPEFFAGLVFRFSLTDTSEAVLLIFVSGNVIIT 280
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTA---LIFSSGKM 76
+++NI++T N + L+ ++ H Y P+ FA ++ R T+ LIF SG +
Sbjct: 218 KIENIIATFNCNVPIRLEVLSSEHEDLCNYEPEFFAGLVFRFSLTDTSEAVLLIFVSGNV 277
Query: 77 VCTGAKSEED 86
+ TG KS E+
Sbjct: 278 IITGCKSMEE 287
>gi|119872319|ref|YP_930326.1| transcription factor [Pyrobaculum islandicum DSM 4184]
gi|166227824|sp|A1RSQ1.1|TBP_PYRIL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|119673727|gb|ABL87983.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
islandicum DSM 4184]
Length = 199
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
++ GG +++NIV+TVNLG +LDL+K+A AEYNP +F +I+R+ +PR +ALIF
Sbjct: 1 MESGGPTYRIENIVATVNLGVELDLEKLAERLAMAEYNPDQFPGLILRLTKPRISALIFR 60
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
+GKMVCTGAK+EED + A R ++++ G F + ++QN+V S ++ + LE V
Sbjct: 61 TGKMVCTGAKNEEDLKNAVRALVKLLRDHGAEVPFDPEVQVQNIVASGNLHAEVDLEQAV 120
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + + YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 121 LML-ENAMYEPEQFPGLIYRMSSPRVVMLIFGSGKIVCT 158
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ L NA Y P++F +I R+ PR
Sbjct: 88 DHGAEVPFDPEVQVQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVM 147
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE D A +K ++ LG
Sbjct: 148 LIFGSGKIVCTGAKSERDVATAVQKLYNQLKDLG 181
>gi|193875778|gb|ACF24525.1| TATA binding protein of TFIID [Gymnochlora stellata]
Length = 162
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 35 LDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKY 94
LDLKK+AL A+N+EYNPKRF A+I+R R+P+ TALIF SGKMVCTG K+E +++ A+ K+
Sbjct: 1 LDLKKVALKAKNSEYNPKRFHALILRSRDPKATALIFKSGKMVCTGTKTETEAKEASLKF 60
Query: 95 ARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMV 153
++I++ GF L ++ ++N+V +CD + PI L+ + + YEPE+FPGL++R
Sbjct: 61 LKVIKQAGFTKAMLKNYSVRNVVATCDYRSPINLDPIFFGYRDQCMYEPEIFPGLLFRPN 120
Query: 154 KPRIVLLIFVSGKVVLT 170
K +IV++ F SGK+V+T
Sbjct: 121 KAKIVVIFFSSGKIVIT 137
>gi|452055842|gb|AGF92132.1| TATA box-binding protein, partial [Scophthalmus maximus]
Length = 72
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 46 NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA 105
NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPA
Sbjct: 1 NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPA 60
Query: 106 KFLDFKIQNMVG 117
KFLDFKIQNMVG
Sbjct: 61 KFLDFKIQNMVG 72
>gi|327400113|ref|YP_004340952.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
gi|327315621|gb|AEA46237.1| TATA-box-binding protein [Archaeoglobus veneficus SNP6]
Length = 184
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ +G +DL KIA ++AEY PK+F +++R +EP+ ALIF SGK+VCTG
Sbjct: 8 KIENVVASTQIGENIDLNKIAKEVKDAEYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTG 67
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
+KS ED+ A R+ +II +LG P + K+QN+V S D+ + L + + G +
Sbjct: 68 SKSVEDANRAVRQVVKIISELGIPVILEPEVKVQNIVASADLGVDLNLNAIAIGLGLENI 127
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ KPR+V+LIF SGK+V+T
Sbjct: 128 EYEPEQFPGLVYRLDKPRVVVLIFGSGKMVVT 159
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG L+L IA L N EY P++F ++ R+ +PR LIF SGKMV
Sbjct: 99 KVQNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDKPRVVVLIFGSGKMVV 158
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K+ ED+ A + A + LG
Sbjct: 159 TGGKNPEDAVKAVERIAEELSALGL 183
>gi|195114322|ref|XP_002001716.1| GI15474 [Drosophila mojavensis]
gi|193912291|gb|EDW11158.1| GI15474 [Drosophila mojavensis]
Length = 442
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IALH N EY + V MR+R P TTA I+SSG++ CTGA
Sbjct: 93 INNVVCSFSVRCHLKLREIALHGSNVEYR-RENGMVTMRLRRPYTTASIWSSGRITCTGA 151
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +F F+I N++G+C + +PIR+ H + + YE
Sbjct: 152 ISESQAKVAARRYARSLSKLGFPVRFQQFRIVNVLGTCSMPWPIRIVNFSERHRESACYE 211
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ ++M P+ L IF +G + +T
Sbjct: 212 PELHPGVTFKMQDPKATLKIFSTGSITVTA 241
>gi|327282209|ref|XP_003225836.1| PREDICTED: beclin 1-associated autophagy-related key regulator-like
[Anolis carolinensis]
Length = 613
Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 73/90 (81%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 3 PSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRI 61
P TP PMTP + G VPQLQNIV+TVNL CKLDLK IALHARNAEYNPKRFAAVIMRI
Sbjct: 113 PVTPMTPMTPTSESSGIVPQLQNIVATVNLACKLDLKNIALHARNAEYNPKRFAAVIMRI 172
Query: 62 REPRTTALIFSSGKMVCTGAK--SEEDSRL 89
REPRTTALIFSSGKMVCTGAK SE+ RL
Sbjct: 173 REPRTTALIFSSGKMVCTGAKRFSEKKERL 202
Score = 43.5 bits (101), Expect = 0.032, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 132 QLQNIVATVNLACKLDLKNIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 190
>gi|123507489|ref|XP_001329427.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912382|gb|EAY17204.1| hypothetical protein TVAG_291560 [Trichomonas vaginalis G3]
Length = 235
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 102/155 (65%), Gaps = 3/155 (1%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+P++ NIV+ V+ GCKLDL KI RN+EYNP RF A +R +EP+ TAL F +GK+
Sbjct: 51 IPKVVNIVACVDYGCKLDLLKITSSTRNSEYNPIRFPAATLRNKEPKATALAFKNGKVNI 110
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLT--HG 135
G KS + + AAR + R+ + +G K F I NMV + D KFPI LE + + H
Sbjct: 111 VGCKSADIALKAARCFGRLFKNIGIKDVKIKSFSIANMVATMDCKFPIHLESIASSPGHI 170
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+F++Y PE++ GLIYR+ P+ L+I+VSGK+++T
Sbjct: 171 KFATYNPEIYAGLIYRLASPKTTLMIYVSGKIIIT 205
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL---HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+ N+V+T++ + L+ IA H + A YNP+ +A +I R+ P+TT +I+ SGK++
Sbjct: 144 SIANMVATMDCKFPIHLESIASSPGHIKFATYNPEIYAGLIYRLASPKTTLMIYVSGKII 203
Query: 78 CTGAKSEEDSRLAA 91
TGAKSEE+ + A+
Sbjct: 204 ITGAKSEEELKAAS 217
>gi|37724114|gb|AAO17774.1| TATA-box binding protein [Passer domesticus]
Length = 167
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 75/87 (86%), Gaps = 1/87 (1%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 81 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 140
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEED 86
RIREPRTTALIFSSGKMVCTGAKSEE
Sbjct: 141 RIREPRTTALIFSSGKMVCTGAKSEEQ 167
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 102 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 160
>gi|325185920|emb|CCA20424.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 203
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 110/165 (66%), Gaps = 9/165 (5%)
Query: 10 MTPVDMGGSVPQL--QNIVSTVNLGCKLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRT 66
MTP+ VP+L +N+V + NLG + DL + + + + AE PK+ ++M+I P T
Sbjct: 1 MTPM----VVPRLDIKNVVCSANLGMRFDLTDLLIKSQKRAELVPKK-NCILMKIPSPDT 55
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPI 125
TA++FS+GK+V TGA SE+ + AARK+ +IIQK+ +P +DFKI+N++G+CDV F I
Sbjct: 56 TAMLFSNGKLVVTGANSEDQVKTAARKFTQIIQKMDYPGVNLIDFKIRNIIGNCDVGFRI 115
Query: 126 RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+E H YEPEL+P LIYR+ P + +L+FVSGKVV T
Sbjct: 116 LMEKFAAAHASRCIYEPELYPALIYRLAHPSVKILVFVSGKVVFT 160
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+++NI+ ++G ++ ++K A HA Y P+ + A+I R+ P L+F SGK+V T
Sbjct: 101 KIRNIIGNCDVGFRILMEKFAAAHASRCIYEPELYPALIYRLAHPSVKILVFVSGKVVFT 160
Query: 80 GAKSEEDSRLAARK-YARIIQ 99
G+K D A + Y ++Q
Sbjct: 161 GSKDPRDLHAACEQIYPLLVQ 181
>gi|18313147|ref|NP_559814.1| transcription factor [Pyrobaculum aerophilum str. IM2]
gi|24638239|sp|Q8ZVR0.1|TBP_PYRAE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|18160658|gb|AAL63996.1| transcription initiation factor TFIID (TATA-binding) [Pyrobaculum
aerophilum str. IM2]
Length = 199
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TVNLG +LDL+++A AEYNP +F +I+R+ +PR +ALIF +GKMVCTG
Sbjct: 9 RIENIVATVNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AK+EED + A R ++++ G F + +IQN+V S ++ + LE VL + +
Sbjct: 69 AKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLML-ENAM 127
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 128 YEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ L NA Y P++F +I R+ PR
Sbjct: 88 DHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVI 147
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D A +K +++LG
Sbjct: 148 LIFGSGKIVCTGAKSEKDVATAVQKLYNQLKELG 181
>gi|167522359|ref|XP_001745517.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775866|gb|EDQ89488.1| predicted protein [Monosiga brevicollis MX1]
Length = 211
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 3/160 (1%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIF 71
P D G P ++N+V+T K++L ++ RN EYNP+RFAA ++R + P +T L+F
Sbjct: 27 PAD--GITPTVENVVATGYFSGKVNLAEVQKKTRNIEYNPRRFAACVIRNKLPHSTGLLF 84
Query: 72 SSGKMVCTGAKSEEDSRLAARKYARI-IQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
SSGK+V G KSEE + A K+ I I++ FKI N+VG DV F I L L
Sbjct: 85 SSGKLVIMGCKSEEQAEQAWSKFQDIVIKRCNIAVTPTGFKIHNVVGKVDVGFKIDLHKL 144
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ H +F +Y+PE FPGL YRM P +VLL+F SGKVVLT
Sbjct: 145 HMEHSKFVTYDPETFPGLTYRMQDPSVVLLVFHSGKVVLT 184
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ N+V V++G K+DL K+ + H++ Y+P+ F + R+++P L+F SGK+V T
Sbjct: 125 KIHNVVGKVDVGFKIDLHKLHMEHSKFVTYDPETFPGLTYRMQDPSVVLLVFHSGKVVLT 184
Query: 80 GAKS 83
AK+
Sbjct: 185 KAKT 188
>gi|171185805|ref|YP_001794724.1| transcription factor [Pyrobaculum neutrophilum V24Sta]
gi|226703562|sp|B1Y949.1|TBP_THENV RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|170935017|gb|ACB40278.1| 2-alkenal reductase [Pyrobaculum neutrophilum V24Sta]
Length = 197
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TVNLG +LDL+K+A AEYNP +F +I+R+ +PR +ALIF +GKMVCTG
Sbjct: 9 RIENIVATVNLGVELDLEKLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AK+EED + A R ++++ G F + +IQN+V S ++ + LE VL + +
Sbjct: 69 AKNEEDLKNAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLFAEVDLEQAVLML-ENAM 127
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 128 YEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ L NA Y P++F +I R+ PR
Sbjct: 88 DHGADVPFDPEVQIQNIVASGNLFAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVI 147
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D A +K ++ LG
Sbjct: 148 LIFGSGKIVCTGAKSEKDVATAVQKLYNQLKDLG 181
>gi|405976239|gb|EKC40752.1| TATA box-binding-like protein 1 [Crassostrea gigas]
Length = 280
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + N C L+L+ IA+ + EY ++ + V M+IR P TTA I+SSGK+VCTGA
Sbjct: 51 INNVVCSFNTRCHLNLRSIAMEGSHVEYRREQ-SMVNMKIRRPYTTATIWSSGKIVCTGA 109
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+S++AARK+AR +Q+LG+ F +F++ N++G+C + F I++ G H + +SYE
Sbjct: 110 TSEEESKIAARKFARKLQRLGYKVTFTNFRVVNVLGTCGMPFRIKIAGFSQKHPKDASYE 169
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ P+ L IF +G + +T
Sbjct: 170 PELHPGVTYKIKDPKATLKIFSTGSITVTA 199
>gi|195386532|ref|XP_002051958.1| GJ17285 [Drosophila virilis]
gi|194148415|gb|EDW64113.1| GJ17285 [Drosophila virilis]
Length = 387
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IALH N EY + V MR+R P TTA I+SSG++ CTGA
Sbjct: 54 INNVVCSFSVRCHLKLREIALHGSNVEYR-RENGMVTMRLRRPYTTASIWSSGRITCTGA 112
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP F +F+I N++G+C + + IR+ H +SYE
Sbjct: 113 ISEPQAKVAARRYARSLGKLGFPVHFQNFRIVNVLGTCSMPWSIRIVKFSERHRDNASYE 172
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ + IF +G + +T
Sbjct: 173 PELHPGVTYKMRDPKATMKIFSTGSITVTA 202
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 24 NIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
N++ T ++ + + K + H NA Y P+ V ++R+P+ T IFS+G + T A
Sbjct: 145 NVLGTCSMPWSIRIVKFSERHRDNASYEPELHPGVTYKMRDPKATMKIFSTGSITVTAA 203
>gi|195035138|ref|XP_001989048.1| GH10255 [Drosophila grimshawi]
gi|193905048|gb|EDW03915.1| GH10255 [Drosophila grimshawi]
Length = 314
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L+ IAL N EY + + MR+R P TTA I+SSG++ CTGA
Sbjct: 26 ITNVVCSFSVRCHLNLQNIALKGSNVEYR-RENGMLTMRLRRPYTTASIWSSGRITCTGA 84
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YARI++ LGFP +F F++ N++ +C + +PI++ + + + +SYE
Sbjct: 85 ISEMQAKVAARRYARILEHLGFPVRFQSFRVVNVLATCCMPWPIKIVNFSMHNREMASYE 144
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL+PG+ YRM P+ L IF +G + +T
Sbjct: 145 PELYPGVTYRMRNPKATLRIFSTGNITVTA 174
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARN-AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
N+++T + + + ++H R A Y P+ + V R+R P+ T IFS+G + T A
Sbjct: 117 NVLATCCMPWPIKIVNFSMHNREMASYEPELYPGVTYRMRNPKATLRIFSTGNITVTAA 175
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis]
gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis]
Length = 656
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IAL+ N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 265 INNVVCSFSVRCHLKLREIALNGSNVEYR-RENGMVTMKLRRPYTTASIWSSGRITCTGA 323
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP F +F+I N++G+C + + I++ H +SYE
Sbjct: 324 TSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYE 383
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M +P+ L IF +G + +T
Sbjct: 384 PELHPGVTYKMREPKATLKIFSTGSITVTA 413
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 43 HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
H NA Y P+ V ++REP+ T IFS+G + T A
Sbjct: 376 HRDNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 414
>gi|4741972|gb|AAD28784.1|AF136569_1 TATA box binding protein-related factor 2 [Drosophila melanogaster]
Length = 632
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L++IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 204 INNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 262
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 263 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 322
Query: 142 PELFPGLIYRMV--KPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 323 PELHPGVTYKMRDPDPKATLKIFSTGSVTVTA 354
>gi|24640580|ref|NP_511084.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45554500|ref|NP_996377.1| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
gi|17862444|gb|AAL39699.1| LD27895p [Drosophila melanogaster]
gi|22831945|gb|AAF46368.2| TATA box binding protein-related factor 2, isoform J [Drosophila
melanogaster]
gi|45446857|gb|AAF46369.3| TATA box binding protein-related factor 2, isoform H [Drosophila
melanogaster]
Length = 632
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L++IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 204 INNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 262
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 263 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 322
Query: 142 PELFPGLIYRMV--KPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 323 PELHPGVTYKMRDPDPKATLKIFSTGSVTVTA 354
>gi|4688680|emb|CAB41475.1| TBP-like factor [Drosophila melanogaster]
Length = 537
Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L++IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 109 INNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 167
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 168 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 227
Query: 142 PELFPGLIYRMV--KPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 228 PELHPGVTYKMRDPDPKATLKIFSTGSVTVTA 259
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni]
gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni]
Length = 1222
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IALH N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 734 INNVVCSFSVRCHLKLREIALHGANVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 792
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +F +F+I N++G+C + + I++ H +SYE
Sbjct: 793 TSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYE 852
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M +P+ L IF +G + +T
Sbjct: 853 PELHPGVTYKMREPKATLKIFSTGSITVTA 882
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 43 HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
H NA Y P+ V ++REP+ T IFS+G + T A
Sbjct: 845 HRDNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 883
>gi|432963770|ref|XP_004086828.1| PREDICTED: TATA-box-binding protein-like [Oryzias latipes]
Length = 237
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 3/132 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q++N+VS V+LGC+LDL I N +YNPK + +IMRIR+PRTTA I+S+GKM+CT
Sbjct: 92 QIKNVVSVVDLGCRLDLGAIGKALWNTQYNPKTYTGLIMRIRKPRTTANIYSTGKMICTA 151
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVK-FPIRLEGLVLTHGQFSS 139
A S E+SR AAR++ARI+QK GFP +FL+F++ N V C VK F + LEGL ++ Q S
Sbjct: 152 ACSIEESRQAARRHARILQKAGFPVRFLNFRVINCV--CMVKTFCLNLEGLTRSNPQGFS 209
Query: 140 YEPELFPGLIYR 151
+EPEL P + R
Sbjct: 210 FEPELNPAVFLR 221
>gi|149047098|gb|EDL99818.1| TATA box binding protein, isoform CRA_b [Rattus norvegicus]
Length = 262
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 122 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 181
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEE 85
RIREPRTTALIFSSGKMVCTGAKS E
Sbjct: 182 RIREPRTTALIFSSGKMVCTGAKSYE 207
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 143 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 201
>gi|16741283|gb|AAH16476.1| TATA box binding protein [Mus musculus]
gi|148688515|gb|EDL20462.1| TATA box binding protein, isoform CRA_c [Mus musculus]
Length = 260
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/86 (83%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 120 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 179
Query: 60 RIREPRTTALIFSSGKMVCTGAKSEE 85
RIREPRTTALIFSSGKMVCTGAKS E
Sbjct: 180 RIREPRTTALIFSSGKMVCTGAKSYE 205
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 141 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 199
>gi|194891201|ref|XP_001977450.1| GG18249 [Drosophila erecta]
gi|190649099|gb|EDV46377.1| GG18249 [Drosophila erecta]
Length = 641
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 100/152 (65%), Gaps = 3/152 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L+ IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 219 INNVVCSFSVGCHLKLRDIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 277
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 278 TSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 337
Query: 142 PELFPGLIYRMV--KPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 338 PELHPGVTYKMRDPDPKATLKIFSTGSVTVTA 369
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis]
gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis]
Length = 289
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+LK+IA H N EY K V M++R+P TTA I+SSGK+ CTGA
Sbjct: 54 INNVVCSFSVRCHLNLKEIATHGANVEYR-KENGMVTMKLRKPYTTASIWSSGKITCTGA 112
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+++++AAR++AR +QKLGF +F +F++ N++G+C + F I++ + + + YE
Sbjct: 113 TSEDNAKIAARRFARSLQKLGFEVRFNNFRVVNVLGTCSMPFGIKINSFSAKYPKQAEYE 172
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PE+ PG+ YR+ P+ L IF +G + +T
Sbjct: 173 PEIHPGVTYRLKDPKATLKIFSTGSITVTA 202
>gi|399217563|emb|CCF74450.1| unnamed protein product [Babesia microti strain RI]
Length = 283
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 115/172 (66%), Gaps = 11/172 (6%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
+T + G P +QNIV++V +G +DL+++A+ RNAEYNPK+ A+I R+ +P+ T+L
Sbjct: 88 LTTIHSGYRSPTVQNIVASVYIGIDIDLRQVAISTRNAEYNPKKVNALIFRLLKPKCTSL 147
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRL 127
+F +G+++ TGAK+ ED+++ A++ +++ K+ +F +FKI+N++ + D P+RL
Sbjct: 148 MFQTGRIMITGAKTIEDAKIGAKRIVKLLLKVLKSENIRFKNFKIENIIATADCCLPVRL 207
Query: 128 EGLVLTHGQFSSYEPELF------PGLIYR---MVKPRIVLLIFVSGKVVLT 170
E L + +F SYEPELF GL+YR + VLL+FVSGK+++T
Sbjct: 208 ESLARDYREFCSYEPELFAGEIFDSGLVYRCPPTRNTKAVLLVFVSGKIIIT 259
>gi|126459691|ref|YP_001055969.1| transcription factor [Pyrobaculum calidifontis JCM 11548]
gi|166227823|sp|A3MV36.1|TBP_PYRCJ RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|126249412|gb|ABO08503.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
calidifontis JCM 11548]
Length = 199
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TVNLG +LDL+ +A AEYNP +F +I+R+ +PR +ALIF +GKMVCTG
Sbjct: 9 RIENIVATVNLGVELDLESLAERLPMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AK+EED + A R +++ G F + +IQN+V S ++ + LE V + +
Sbjct: 69 AKNEEDLKNAVRALVKLLNDHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFML-ENAM 127
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 128 YEPEQFPGLIYRMSSPRVVILIFGSGKIVCT 158
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ NA Y P++F +I R+ PR
Sbjct: 88 DHGAEVPFDPEVQIQNIVASGNLHAEVDLEQAVFMLENAMYEPEQFPGLIYRMSSPRVVI 147
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D A +K +++LG
Sbjct: 148 LIFGSGKIVCTGAKSEKDVATAVQKLYNQLKELG 181
>gi|442615484|ref|NP_001259329.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
gi|440216531|gb|AGB95174.1| TATA box binding protein-related factor 2, isoform I [Drosophila
melanogaster]
Length = 1714
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L++IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 1286 INNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 1344
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 1345 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 1404
Query: 142 PELFPGLIYRM--VKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 1405 PELHPGVTYKMRDPDPKATLKIFSTGSVTVT 1435
>gi|161077628|ref|NP_001096905.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|281360601|ref|NP_001162701.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|442615486|ref|NP_001259330.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
gi|76446337|gb|ABA42953.1| TRF2 [Drosophila melanogaster]
gi|158031744|gb|ABW09355.1| TATA box binding protein-related factor 2, isoform E [Drosophila
melanogaster]
gi|272506032|gb|ACZ95236.1| TATA box binding protein-related factor 2, isoform F [Drosophila
melanogaster]
gi|440216532|gb|AGB95175.1| TATA box binding protein-related factor 2, isoform G [Drosophila
melanogaster]
Length = 1715
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 101/151 (66%), Gaps = 3/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L++IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 1287 INNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 1345
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 1346 TSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 1405
Query: 142 PELFPGLIYRM--VKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 1406 PELHPGVTYKMRDPDPKATLKIFSTGSVTVT 1436
>gi|410960405|ref|XP_003986780.1| PREDICTED: TATA-box-binding protein [Felis catus]
Length = 246
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 80/98 (81%), Gaps = 4/98 (4%)
Query: 1 MSPSTPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIM 59
M+P TP P TP + G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIM
Sbjct: 132 MTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIM 191
Query: 60 RIREPRTTALIFSSGKMVCTGAKSE---EDSRLAARKY 94
RIREPRTTALIFSSGKMVCTGAKS+ E +++ A Y
Sbjct: 192 RIREPRTTALIFSSGKMVCTGAKSDPVCEGAKVRAEIY 229
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 153 QLQNIVSTVNLGCKLDLKTIAL-RARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 211
>gi|427787417|gb|JAA59160.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 321
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL A N EY + + M+IR P TTA ++SSGK+ CTGA
Sbjct: 84 INNVVCSFSVRCHLNLRQIALTASNVEYR-RENGMLTMKIRTPYTTASMWSSGKVTCTGA 142
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE ++LAAR+YARI+QKLGF KF+++++ N++G+C + F I+L ++ +SYE
Sbjct: 143 TSEETAKLAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQSNRPIASYE 202
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ + L IF +G + +T
Sbjct: 203 PELHPGVTYKIKDLKATLKIFSTGSITVTA 232
>gi|281346310|gb|EFB21894.1| hypothetical protein PANDA_021469 [Ailuropoda melanoleuca]
Length = 213
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/78 (88%), Positives = 71/78 (91%), Gaps = 1/78 (1%)
Query: 6 PGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP 64
P PMTPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIREP
Sbjct: 136 PMTPMTPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREP 195
Query: 65 RTTALIFSSGKMVCTGAK 82
RTTALIFSSGKMVCTGAK
Sbjct: 196 RTTALIFSSGKMVCTGAK 213
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 152 QLQNIVSTVNLACKLDLKKIAL-HAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 210
>gi|332031263|gb|EGI70797.1| TATA box-binding protein-like protein 1 [Acromyrmex echinatior]
Length = 401
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 174 INNVVCSFSVRCHLNLREIALNGSNVEY-RRENGMITMKLRRPYTTASIWSSGKVTCTGA 232
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + + YE
Sbjct: 233 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCSMPFAIKITSFSVHHKENADYE 292
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 293 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 322
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis]
gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis]
Length = 711
Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IAL+ N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 282 INNVVCSFSVRCHLKLREIALNGSNVEYR-RENGMVTMKLRRPYTTASIWSSGRITCTGA 340
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP F +F+I N++G+C + + I++ H +SYE
Sbjct: 341 TSESQAKIAARRYARCLSKLGFPTHFQNFRIVNVLGTCSMPWAIKIVNFSERHRDNASYE 400
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M +P+ L IF +G + +T
Sbjct: 401 PELHPGVTYKMREPKATLKIFSTGSITVT 429
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 43 HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
H NA Y P+ V ++REP+ T IFS+G + T A
Sbjct: 393 HRDNASYEPELHPGVTYKMREPKATLKIFSTGSITVTAA 431
>gi|288931352|ref|YP_003435412.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
gi|288893600|gb|ADC65137.1| TATA-box binding family protein [Ferroglobus placidus DSM 10642]
Length = 183
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ +G +DL KIA ++AEY PK+F +++R ++P+ AL+F SGK+VCTG
Sbjct: 7 KIENVVASTQIGENIDLNKIAREIKDAEYKPKQFPGLVLRTKDPKAAALVFRSGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
+KS ED+R A ++ II+ LG D ++QN+V S D+ + L + + G +
Sbjct: 67 SKSVEDARRAVKQVVNIIKSLGIEVYDDPDVRVQNIVASADLGVDLNLNAIAVGLGLENI 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ PR+V+LIF SGK+V+T
Sbjct: 127 EYEPEQFPGLVYRLRDPRVVVLIFGSGKMVIT 158
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG L+L IA L N EY P++F ++ R+R+PR LIF SGKMV
Sbjct: 98 RVQNIVASADLGVDLNLNAIAVGLGLENIEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVI 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A K + +Q LG
Sbjct: 158 TGGKKPEDAKRAVEKISEELQALGL 182
>gi|410962333|ref|XP_003987726.1| PREDICTED: TATA box-binding protein-like protein 2 [Felis catus]
Length = 326
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 5 TPGPPMTPV-DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
TP P+TPV + G VPQLQNIVSTVNL CKLDLKKIALHA+NAEYNPKRFAAVIMRIRE
Sbjct: 236 TPMTPVTPVSECSGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIRE 295
Query: 64 PRTTALIFSSGKMVCTGAK 82
PRTTALIFSSGKMVCTGAK
Sbjct: 296 PRTTALIFSSGKMVCTGAK 314
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 253 QLQNIVSTVNLACKLDLKKIAL-HAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 311
>gi|301103642|ref|XP_002900907.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
gi|262101662|gb|EEY59714.1| TATA-box-binding protein, putative [Phytophthora infestans T30-4]
Length = 163
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 100/139 (71%), Gaps = 3/139 (2%)
Query: 34 KLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAAR 92
+ DL + + + R AE PK+ ++M++ P+ TA++F++GK+VCTGA++E+ + AAR
Sbjct: 2 RFDLTNLLVKSHRRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEDAIKNAAR 60
Query: 93 KYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYR 151
++ ++IQK+ FP +DFKIQN+VG+CD+ F + +E L H +YEPEL+P LIYR
Sbjct: 61 RFTQVIQKMDFPGVNLIDFKIQNVVGTCDMGFRVLVEALAFAHSDRCTYEPELYPALIYR 120
Query: 152 MVKPRIVLLIFVSGKVVLT 170
+ KP++ +L+FVSGKVV T
Sbjct: 121 LEKPQVKVLVFVSGKVVFT 139
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V T ++G ++ ++ +A H+ Y P+ + A+I R+ +P+ L+F SGK+V T
Sbjct: 80 KIQNVVGTCDMGFRVLVEALAFAHSDRCTYEPELYPALIYRLEKPQVKVLVFVSGKVVFT 139
Query: 80 GAKS 83
+K
Sbjct: 140 DSKE 143
>gi|195480136|ref|XP_002101150.1| GE15780 [Drosophila yakuba]
gi|194188674|gb|EDX02258.1| GE15780 [Drosophila yakuba]
Length = 1872
Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 100/151 (66%), Gaps = 3/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++GC L L+ IAL N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 1445 INNVVCSFSVGCHLKLRDIALQGSNVEFR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 1503
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYE
Sbjct: 1504 TSEAMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 1563
Query: 142 PELFPGLIYRM--VKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M P+ L IF +G V +T
Sbjct: 1564 PELHPGVTYKMRDPDPKATLKIFSTGSVTVT 1594
>gi|157057845|gb|ABV02910.1| TATA box binding protein [Phodopus sungorus]
Length = 68
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/68 (95%), Positives = 67/68 (98%)
Query: 49 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL 108
YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFL
Sbjct: 1 YNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFL 60
Query: 109 DFKIQNMV 116
DFKIQNMV
Sbjct: 61 DFKIQNMV 68
>gi|325969184|ref|YP_004245376.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
gi|323708387|gb|ADY01874.1| 2-alkenal reductase [Vulcanisaeta moutnovskia 768-28]
Length = 193
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M +++NIV+TVNLG LDL K+A AEYNP++F +I+R++ P+ +ALIF +G
Sbjct: 1 MANPTYRIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLT 133
KMVCTGAKSE + + A ++ R++ + G + ++QN+V S ++ + +E L
Sbjct: 61 KMVCTGAKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALM 120
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ S YEPE FPGLIYRM P++VLLIF SGK+V T
Sbjct: 121 L-ENSMYEPEQFPGLIYRMDDPKVVLLIFSSGKIVCT 156
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
+ G VP Q+QNIV++ NL ++D++K AL N+ Y P++F +I R+ +P+
Sbjct: 86 EHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVL 145
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIFSSGK+VCTGAK E+ R A K +++ +G
Sbjct: 146 LIFSSGKIVCTGAKKEQQVRDAVFKIHDVLRDIG 179
>gi|383852426|ref|XP_003701729.1| PREDICTED: TATA box-binding protein-like protein 1-like [Megachile
rotundata]
Length = 295
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 69 INNVVCSFSVRCHLNLREIALNGSNVEYR-RESGMITMKLRRPYTTASIWSSGKVTCTGA 127
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ L H + + YE
Sbjct: 128 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSLYHKENADYE 187
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 188 PELHPGVTYKLKEPKATLKIFSTGSVTVT 216
>gi|348686462|gb|EGZ26277.1| hypothetical protein PHYSODRAFT_484921 [Phytophthora sojae]
Length = 161
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 99/139 (71%), Gaps = 3/139 (2%)
Query: 34 KLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAAR 92
+ DL + + + R AE PK+ ++M++ P+ TA++F++GK+VCTGA++EE + AR
Sbjct: 2 RFDLTNLLVKSHRRAELVPKK-NCILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVAR 60
Query: 93 KYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYR 151
++ ++IQK+ FP +DFKIQN+VG+CD+ F + +E + H +YEPEL+P LIYR
Sbjct: 61 RFTQVIQKMDFPGVNLIDFKIQNVVGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYR 120
Query: 152 MVKPRIVLLIFVSGKVVLT 170
+ KP++ +L+FVSGKVV T
Sbjct: 121 LDKPQVKVLVFVSGKVVFT 139
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V T +LG ++ ++ IA H+ Y P+ + A+I R+ +P+ L+F SGK+V T
Sbjct: 80 KIQNVVGTCDLGFRVLVEAIAFAHSDCCTYEPELYPALIYRLDKPQVKVLVFVSGKVVFT 139
Query: 80 GAKS 83
+K
Sbjct: 140 DSKE 143
>gi|241239027|ref|XP_002401459.1| TATA-box-binding protein, putative [Ixodes scapularis]
gi|215496181|gb|EEC05822.1| TATA-box-binding protein, putative [Ixodes scapularis]
Length = 316
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL A N EY + + M+IR P TTA ++SSGK+ CTGA
Sbjct: 75 INNVVCSFSVRCHLNLRQIALTATNVEYR-RENGMLTMKIRAPYTTASMWSSGKVTCTGA 133
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE +++AAR+YARI+QKLGF KF+++++ N++G+C + F I+L + +SYE
Sbjct: 134 TSEETAKMAARRYARILQKLGFRVKFMNYRVVNVLGTCTMPFAIKLIPFSQHNRGLASYE 193
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ + L IF +G + +T
Sbjct: 194 PELHPGVTYKIKDLKATLKIFSTGSITVTA 223
>gi|307594950|ref|YP_003901267.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
gi|307550151|gb|ADN50216.1| TATA-box binding family protein [Vulcanisaeta distributa DSM 14429]
Length = 193
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TVNLG LDL K+A AEYNP++F +I+R++ P+ +ALIF +GKMVCTG
Sbjct: 7 RIENIVATVNLGIDLDLDKLAERLPAAEYNPEQFPGLILRLQRPKISALIFRTGKMVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKSE + + A ++ R++ + G + ++QN+V S ++ + +E L + S
Sbjct: 67 AKSENELKRAVKELVRLLNEHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALML-ENSM 125
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM P++VLLIF SGK+V T
Sbjct: 126 YEPEQFPGLIYRMDDPKVVLLIFSSGKIVCT 156
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
+ G VP Q+QNIV++ NL ++D++K AL N+ Y P++F +I R+ +P+
Sbjct: 86 EHGADVPLTPEIQVQNIVASGNLHAEVDIEKSALMLENSMYEPEQFPGLIYRMDDPKVVL 145
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIFSSGK+VCTGAK E+ R A K I++ +G
Sbjct: 146 LIFSSGKIVCTGAKKEQQVRDAVFKIHDILKDIG 179
>gi|298712244|emb|CBJ26695.1| transcription initiation factor TFIID [Ectocarpus siliculosus]
Length = 214
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 100/154 (64%), Gaps = 6/154 (3%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
LQN+ +TVN+ +D +A R+AEYNPK+ AV+MRIREP+ T L+FSSGK+V TGA
Sbjct: 35 LQNVTATVNMRITIDPSSLANKIRHAEYNPKKLPAVVMRIREPQATGLLFSSGKVVITGA 94
Query: 82 KSEEDSRLAARKYARIIQKLGF-----PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
E +R AA+++ +++ +G P + L F +QNMV + +V PI LE + +
Sbjct: 95 AGVEAAREAAQRFVAVVEGVGLNPTTNPNQ-LRFAVQNMVATFEVDAPISLELMAYCQAR 153
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPELFPGLIY+ +V +F SG+VVLT
Sbjct: 154 WCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLT 187
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V+T + + L+ +A AR Y P+ F +I + A +FSSG++V TG
Sbjct: 129 VQNMVATFEVDAPISLELMAYCQARWCMYEPELFPGLIYQTAHRGVVAHVFSSGRVVLTG 188
Query: 81 AKSEE 85
K E+
Sbjct: 189 GKQED 193
>gi|391329921|ref|XP_003739415.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Metaseiulus occidentalis]
Length = 284
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 104/162 (64%), Gaps = 6/162 (3%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D GS P + N+V + ++GC L+L++IAL N + + V M++R P TTA
Sbjct: 48 DNNGSPPDELDIVINNVVCSFSVGCHLNLRQIALTGANVVFR-RESGMVSMKLRNPYTTA 106
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 128
I+SSGK+ CTGA SE S++AAR++AR +QKLGF A+F +FK+ N++G+C + F IRL
Sbjct: 107 SIWSSGKITCTGATSENTSKIAARRFARTLQKLGFKARFKNFKVVNVLGTCTMPFAIRLV 166
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
T+ + YEPEL PG+ Y++ + R L IF +G + +T
Sbjct: 167 PFSQTNKPIAQYEPELHPGVTYKIKEIRASLKIFSTGSITVT 208
>gi|145591042|ref|YP_001153044.1| transcription factor [Pyrobaculum arsenaticum DSM 13514]
gi|379004488|ref|YP_005260160.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
gi|145282810|gb|ABP50392.1| TATA binding protein of transcription factor TFIID [Pyrobaculum
arsenaticum DSM 13514]
gi|375159941|gb|AFA39553.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Pyrobaculum oguniense TE7]
Length = 201
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G +++NIV+TVNL +LDL+ +A AEYNP +F +I+R+ +PR +ALIF +GKM
Sbjct: 5 GPTYRIENIVATVNLQVELDLEMLAERLAMAEYNPDQFPGLILRLTKPRISALIFRTGKM 64
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG 135
V TGAK+EED + A R ++++ G F + ++QN+V S ++ + LE VL
Sbjct: 65 VATGAKNEEDLKNAVRALVKLLKDHGADVPFDPEVQVQNIVASGNLHAEVDLEQAVLML- 123
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 124 ENAMYEPEQFPGLIYRMTNPRVVILIFGSGKIVCT 158
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ L NA Y P++F +I R+ PR
Sbjct: 88 DHGADVPFDPEVQVQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMTNPRVVI 147
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE D A +K +++LG
Sbjct: 148 LIFGSGKIVCTGAKSERDVATAVQKLYNQLKELG 181
>gi|284161184|ref|YP_003399807.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
gi|284011181|gb|ADB57134.1| TATA-box binding family protein [Archaeoglobus profundus DSM 5631]
Length = 184
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ +G +DL KIA +A+Y PK+F +++R +EP+ ALIF SGK+VCTG
Sbjct: 8 KIENVVASTQIGENIDLNKIAREIPDADYKPKQFPGLVLRTKEPKAAALIFRSGKVVCTG 67
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
+KS ED+R ++ +I+ LG P + + K+QN+V S D+ + L + + G +
Sbjct: 68 SKSVEDARRVVKQIVKIVGSLGIPVIEEPEVKVQNIVASADLGTDLNLNAIAIGLGLENV 127
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ PR+V+LIF SGK+V+T
Sbjct: 128 EYEPEQFPGLVYRLRDPRVVVLIFGSGKMVVT 159
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG L+L IA L N EY P++F ++ R+R+PR LIF SGKMV
Sbjct: 99 KVQNIVASADLGTDLNLNAIAIGLGLENVEYEPEQFPGLVYRLRDPRVVVLIFGSGKMVV 158
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K+ +D+R A K A ++ LG
Sbjct: 159 TGGKTPDDARRAVEKIAEELESLGL 183
>gi|158285534|ref|XP_308361.4| AGAP007517-PA [Anopheles gambiae str. PEST]
gi|157020038|gb|EAA04678.5| AGAP007517-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L IA H N E+ + V M++R P TTA I+SSGK+ CTGA
Sbjct: 256 INNVVCSFSVRCHLNLHDIARHGHNVEFR-REHGMVTMKLRRPYTTASIWSSGKITCTGA 314
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+Y+R +QKLGF +F +F+I N++G+C + F I + + + +SYE
Sbjct: 315 TSEHQAKIAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPFGIMIVNFSEKYKKDASYE 374
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ P+ L IF +G + +T
Sbjct: 375 PELHPGVTYKLYSPKATLKIFSTGSITVTA 404
>gi|322796560|gb|EFZ19034.1| hypothetical protein SINV_07503 [Solenopsis invicta]
Length = 303
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 79 INNVVCSFSVRCHLNLREIALKGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 137
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + + YE
Sbjct: 138 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSIHHKENADYE 197
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ P+ L IF +G V +T
Sbjct: 198 PELHPGVTYKLKDPKATLKIFSTGSVTVTA 227
>gi|328791980|ref|XP_396371.4| PREDICTED: TATA box binding protein-related factor 2 isoform 1
[Apis mellifera]
Length = 306
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 122
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ H + + YE
Sbjct: 123 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYE 182
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 183 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|380016952|ref|XP_003692431.1| PREDICTED: TATA box-binding protein-like protein 1-like [Apis
florea]
Length = 304
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 122
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ H + + YE
Sbjct: 123 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYE 182
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 183 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|350399828|ref|XP_003485652.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
impatiens]
Length = 290
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 122
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ H + + YE
Sbjct: 123 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYE 182
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 183 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|340712494|ref|XP_003394794.1| PREDICTED: TATA box-binding protein-like protein 1-like [Bombus
terrestris]
Length = 290
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 64 INNVVCSFSVRCHLNLREIALNGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 122
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ H + + YE
Sbjct: 123 TSEVQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPFAIKITSFSSCHKENADYE 182
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 183 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 212
>gi|307191585|gb|EFN75083.1| TATA box-binding protein-like protein 1 [Harpegnathos saltator]
Length = 297
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL N EY + + M++R P TTA I+SSGK+ CTGA
Sbjct: 73 INNVVCSFSVRCHLNLREIALKGSNVEYR-RENGMITMKLRRPYTTASIWSSGKVTCTGA 131
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ + H + + YE
Sbjct: 132 TSEVQAKIAARRFARSLQKLGFQVRFNNYRVVNVLGTCCMPFAIKITSFSVYHKENAEYE 191
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ +P+ L IF +G V +T
Sbjct: 192 PELHPGVTYKLKEPKATLKIFSTGSVTVTA 221
>gi|221057235|ref|XP_002259755.1| transcription initiation factor TFiid,TATA-binding protein
[Plasmodium knowlesi strain H]
gi|193809827|emb|CAQ40531.1| transcription initiation factor TFiid,TATA-binding protein,
putative [Plasmodium knowlesi strain H]
Length = 250
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 100/154 (64%), Gaps = 4/154 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ NI+++ NL +DL+ +A+ RNAEYNP + +I+R+ +P+ T LIF SG+++ TG
Sbjct: 73 KIHNIIASANLSVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTG 132
Query: 81 AKSEEDSRLAARKYARIIQKL-GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
K++ D+ +K +II+ + P K F I+N++ S D PIRLE L H + +
Sbjct: 133 TKTKADAIYGCKKIGKIIKLVTNEPVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCN 192
Query: 140 YEPELFPGLIYR---MVKPRIVLLIFVSGKVVLT 170
YEPELF GL+YR K + V+LIFVSGK+++T
Sbjct: 193 YEPELFAGLVYRYKPTSKLKSVILIFVSGKIIIT 226
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTT 67
PV + G ++NI+++ + + L+ +A H Y P+ FA ++ R + + ++
Sbjct: 157 PVKLEGF--NIENIIASADCNMPIRLEMLAHDHKDYCNYEPELFAGLVYRYKPTSKLKSV 214
Query: 68 ALIFSSGKMVCTGAKS 83
LIF SGK++ TG KS
Sbjct: 215 ILIFVSGKIIITGCKS 230
>gi|11497985|ref|NP_069209.1| transcription factor [Archaeoglobus fulgidus DSM 4304]
gi|6647869|sp|O29874.1|TBP_ARCFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2650259|gb|AAB90862.1| transcription initiation factor IID [Archaeoglobus fulgidus DSM
4304]
Length = 183
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ +G +DL KI+ +++EY PK+F +++R +EP+ AL+F SGK+VCTG
Sbjct: 7 KIENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
+KS ED+R A ++ ++++++G + K+QN+V S D+ + L + + G +
Sbjct: 67 SKSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLENI 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ PR+V+LIF SGK+V+T
Sbjct: 127 EYEPEQFPGLVYRLDNPRVVVLIFGSGKMVVT 158
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG L+L IA L N EY P++F ++ R+ PR LIF SGKMV
Sbjct: 98 KVQNIVASADLGVDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDNPRVVVLIFGSGKMVV 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG KS ED+R A + + ++ LG
Sbjct: 158 TGGKSPEDARKAVERISEELRTLGL 182
>gi|327311063|ref|YP_004337960.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
gi|326947542|gb|AEA12648.1| TATA-box-binding protein [Thermoproteus uzoniensis 768-20]
Length = 207
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 101/155 (65%), Gaps = 2/155 (1%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G +++NIV+TVNLG +LDL+++A AEYNP +F +I+R+ +PR +ALIF +GKM
Sbjct: 8 GPTHKIENIVATVNLGVELDLEQLAEKLPVAEYNPDQFPGLILRLTKPRISALIFRTGKM 67
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG 135
VCTGAK+E D + A +++ G + ++QN+V S + + LE L
Sbjct: 68 VCTGAKNENDLKNAVHALVKLLNDHGANVPLNPEVQVQNIVASGSLNAEVDLEQAALLL- 126
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + YEPE FPGLIYRM PR+V+LIF SGK+V T
Sbjct: 127 ENAMYEPEQFPGLIYRMTDPRVVVLIFGSGKIVCT 161
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G +VP Q+QNIV++ +L ++DL++ AL NA Y P++F +I R+ +PR
Sbjct: 91 DHGANVPLNPEVQVQNIVASGSLNAEVDLEQAALLLENAMYEPEQFPGLIYRMTDPRVVV 150
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D +A ++ ++++G
Sbjct: 151 LIFGSGKIVCTGAKSEKDVAVAVQQLYDKLREIG 184
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis]
gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis]
Length = 987
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L+ IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 503 INNVVCSFSVRCHLKLRDIALRGCNVEYR-RENGMVTMKLRRPYTTASIWSSGRITCTGA 561
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +F +F+I N++G+C + + I++ H +SYE
Sbjct: 562 TSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYE 621
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G + +T
Sbjct: 622 PELHPGVTYKMKMPKATLKIFSTGSITVTA 651
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura]
Length = 1037
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L+ IAL N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 554 INNVVCSFSVRCHLKLRDIALRGCNVEYR-RENGMVTMKLRRPYTTASIWSSGRITCTGA 612
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +F +F+I N++G+C + + I++ H +SYE
Sbjct: 613 TSEIMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSEKHRDNASYE 672
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y+M P+ L IF +G + +T
Sbjct: 673 PELHPGVTYKMKMPKATLKIFSTGSITVTA 702
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae]
gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae]
Length = 1683
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L+ IAL+ N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 1245 INNVVCSFSVRCHLKLRDIALNGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGA 1303
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP +F +F+I N++G+C + + I++ H + +SYE
Sbjct: 1304 TSEPMAKVAARRYARCLGKLGFPTRFQNFRIVNVLGTCSMPWAIKIVNFSERHRENASYE 1363
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M P+ L IF +G + +T
Sbjct: 1364 PELHPGVTYKMRDPKATLKIFSTGSITVT 1392
Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 43 HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
H NA Y P+ V ++R+P+ T IFS+G + T A
Sbjct: 1356 HRENASYEPELHPGVTYKMRDPKATLKIFSTGSITVTAA 1394
>gi|352681411|ref|YP_004891935.1| Box A binding protein [Thermoproteus tenax Kra 1]
gi|269990956|emb|CAP46909.1| TATA-box binding protein [Thermoproteus tenax Kra 1]
gi|350274210|emb|CCC80855.1| TATA-box binding protein (Box A binding protein) (TBP)
[Thermoproteus tenax Kra 1]
Length = 203
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G +++NIV+TVNLG +LDL+++A AEYNP +F +I+R+ PR +ALIF +GK
Sbjct: 7 AGPTHKIENIVATVNLGVELDLEQLAERLPVAEYNPDQFPGLILRLTRPRISALIFRTGK 66
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTH 134
MVCTGAK+E D + A +++ G + ++QN+V S + + LE L
Sbjct: 67 MVCTGAKNETDLKNAVHALVKLLNDNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLL 126
Query: 135 GQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM +PR+V+LIF SGK+V T
Sbjct: 127 DN-AMYEPEQFPGLIYRMTEPRVVVLIFGSGKIVCT 161
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ +L ++DL++ AL NA Y P++F +I R+ EPR
Sbjct: 91 DNGADVPLNPEVQVQNIVASGSLNAEVDLEQAALLLDNAMYEPEQFPGLIYRMTEPRVVV 150
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D +A ++ +++LG
Sbjct: 151 LIFGSGKIVCTGAKSEKDVAVAVQRLYDRLKELG 184
>gi|83764126|emb|CAJ12158.1| trf2 protein [Drosophila simulans]
Length = 196
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Query: 15 MGGSVPQL----QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALI 70
M + P+L N+V + ++GC L L+ IAL N EY + V M++R P TTA I
Sbjct: 53 MADNEPELDIVINNVVCSFSVGCHLKLRDIALQGSNVEYR-RENGMVTMKLRHPYTTASI 111
Query: 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130
+SSG++ CTGA SE +++AAR+YAR + KLGFP +FL+F+I N++G+C + + I++
Sbjct: 112 WSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNF 171
Query: 131 VLTHGQFSSYEPELFPGLIYRMVKP 155
H + +SYEPEL PG+ Y+M P
Sbjct: 172 SERHRENASYEPELHPGVTYKMRDP 196
>gi|195355070|ref|XP_002044016.1| GM21561 [Drosophila sechellia]
gi|194129269|gb|EDW51312.1| GM21561 [Drosophila sechellia]
Length = 278
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
Query: 30 NLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRL 89
++GC L L+ IAL N EY + V M++R P TTA I+SSG++ CTGA SE +++
Sbjct: 7 SVGCHLKLRDIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKV 65
Query: 90 AARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLI 149
AAR+YAR + KLGFP +FL+F+I N++G+C + + I++ H + +SYEPEL PG+
Sbjct: 66 AARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVT 125
Query: 150 YRMV--KPRIVLLIFVSGKVVLTV 171
Y+M P+ L IF +G V +T
Sbjct: 126 YKMRDPDPKATLKIFSTGSVTVTA 149
>gi|389584271|dbj|GAB67004.1| transcription initiation factor TFiid TATA-binding protein, partial
[Plasmodium cynomolgi strain B]
Length = 246
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 102/154 (66%), Gaps = 4/154 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ NI+++ NL ++DL+ +A+ RNAEYNP + +I+R+ +P+ T LIF SG+++ TG
Sbjct: 73 KIHNIIASANLSVEIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTVLIFKSGRLMLTG 132
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
K++ D+ A +K +II+ + + K F I+N++ S D PIRLE L H + +
Sbjct: 133 TKTKGDAIYACKKIGKIIRLVTNESVKLEGFNIENIIASADCNMPIRLEMLAHDHKDYCN 192
Query: 140 YEPELFPGLIYR---MVKPRIVLLIFVSGKVVLT 170
YEPELF GL+YR K + V+LIFVSGK+++T
Sbjct: 193 YEPELFAGLVYRYKPTSKLKSVILIFVSGKIIIT 226
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
++NI+++ + + L+ +A H Y P+ FA ++ R + + ++ LIF SGK+
Sbjct: 164 NIENIIASADCNMPIRLEMLAHDHKDYCNYEPELFAGLVYRYKPTSKLKSVILIFVSGKI 223
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 224 IITGCKS 230
>gi|195044570|ref|XP_001991843.1| GH11849 [Drosophila grimshawi]
gi|193901601|gb|EDW00468.1| GH11849 [Drosophila grimshawi]
Length = 689
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L L++IAL+ N EY + V M++R P TTA I+SSG++ CTGA
Sbjct: 214 INNVVCSFSVRCHLKLREIALNGSNVEYR-RENGMVTMKLRRPYTTASIWSSGRITCTGA 272
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR+YAR + KLGFP F F+I N++G+C + + I++ H +SYE
Sbjct: 273 TSELQAKIAARRYARCLGKLGFPTHFQHFRIVNVLGTCSMPWAIKIVNFSERHRDNASYE 332
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y+M +P+ L IF +G + +T
Sbjct: 333 PELHPGVTYKMREPKATLKIFSTGSITVT 361
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium
castaneum]
gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum]
Length = 262
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N EY K + M++R P TTA I+SSGK+ CTGA
Sbjct: 55 INNVVCSFSVRCHLNLREIALNGINVEYR-KENGKITMKLRRPYTTASIWSSGKVTCTGA 113
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR +QKLGF +F ++++ N++G+C + F I++ H + + YE
Sbjct: 114 TSELQAKIAARRFARCLQKLGFKVRFNNYRVVNVLGTCSMPFAIKINSFSERHKE-ADYE 172
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ P+ L IF +G V +T
Sbjct: 173 PELHPGVTYKLQSPKATLKIFSTGSVTVTA 202
>gi|347963631|ref|XP_001687775.2| AGAP000336-PA [Anopheles gambiae str. PEST]
gi|333467108|gb|EDO64342.2| AGAP000336-PA [Anopheles gambiae str. PEST]
Length = 533
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L+ IAL+ N E+ + V M++R P TTA I+SSGK+ CTGA
Sbjct: 248 INNVVCSFSVRCHLNLRDIALYGDNVEFR-RENGMVTMKLRRPYTTASIWSSGKITCTGA 306
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+ +++AAR+Y+R +QKLGF + +F+I N++G+C + + I++ + + +SYE
Sbjct: 307 TSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYE 366
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL PG+ Y++ PR L IF +G + +T
Sbjct: 367 PELHPGVTYKLHSPRATLKIFSTGSITVTA 396
>gi|158288977|ref|XP_310781.4| AGAP000335-PA [Anopheles gambiae str. PEST]
Length = 231
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L+ IAL+ N E+ + V M++R P TTA I+SSGK+ CTGA
Sbjct: 59 INNVVCSFSVRCHLNLRDIALYGDNVEFR-RENGMVTMKLRRPYTTASIWSSGKITCTGA 117
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+ +++AAR+Y+R +QKLGF + +F+I N++G+C + + I++ + + +SYE
Sbjct: 118 TSEDQAKVAARRYSRCLQKLGFNVRLRNFRIVNVLGTCAMPWGIKIVNFSEKYKKDASYE 177
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTVK 172
PEL PG+ Y++ PR L IF +G + +T K
Sbjct: 178 PELHPGVTYKLHSPRATLKIFSTGSITVTGK 208
>gi|304313987|ref|YP_003849134.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302587446|gb|ADL57821.1| TATA-box binding protein [Methanothermobacter marburgensis str.
Marburg]
Length = 181
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 110/163 (67%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT VD+ +++NIV++ LG +DL+ +A N ++N ++F ++ +++EP+T AL
Sbjct: 1 MTDVDI-----KIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRL 127
IF SGK+VCTGAKS EDS+ A + +++ + P +F + KIQN+V S ++ P+ L
Sbjct: 56 IFGSGKLVCTGAKSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 115 EAVALGL-ENTEYEPEQFPGLVYRLDEPKVVLLLFGSGKVVCT 156
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 52/73 (71%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NLG L+L+ +AL N EY P++F ++ R+ EP+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLVYRLDEPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARK 93
AKS ED++L K
Sbjct: 158 AKSAEDAKLGVEK 170
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus]
Length = 314
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L++IAL+ N E+ + V M++R P TTA I+SSG++ CTGA
Sbjct: 91 INNVVCSFSVKCHLNLRQIALNGVNVEFR-RENGMVTMKLRRPYTTASIWSSGRVTCTGA 149
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+ +++AAR+YAR +QKLGF +F +F++ N++G+C + F IR+ + + + YE
Sbjct: 150 TSEDQAKVAARRYARALQKLGFQVRFRNFRVVNVLGTCRMPFGIRIIAFSKKYKE-ADYE 208
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTVK 172
PEL PG+ Y++ P+ L IF +G V +T +
Sbjct: 209 PELHPGVTYKLYNPKATLKIFSTGGVTITAR 239
>gi|15679622|ref|NP_276739.1| transcription factor [Methanothermobacter thermautotrophicus str.
Delta H]
gi|6647868|sp|O27664.1|TBP_METTH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2622753|gb|AAB86100.1| TATA-binding transcription initiation factor [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 181
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 109/163 (66%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT VD+ +++NIV++ LG +DL+ +A N ++N ++F ++ +++EP+T AL
Sbjct: 1 MTDVDI-----KIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRL 127
IF SGK+VCTGAKS EDS+ A + +++ + P +F + KIQN+V S ++ P+ L
Sbjct: 56 IFGSGKLVCTGAKSIEDSKRAIKLTVDMMRTMDPDIPEEF-EIKIQNIVASANLGKPLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 115 EAVALGL-ENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCT 156
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NLG L+L+ +AL N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLGKPLNLEAVALGLENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARK 93
AKS ED++L K
Sbjct: 158 AKSAEDAKLGVEK 170
>gi|159041771|ref|YP_001541023.1| transcription factor [Caldivirga maquilingensis IC-167]
gi|157920606|gb|ABW02033.1| 2-alkenal reductase [Caldivirga maquilingensis IC-167]
Length = 194
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 103/153 (67%), Gaps = 2/153 (1%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V +++NIV+TVNLG LDL+++A AEYNP +F +I+R + P+ +ALIF +GKMVC
Sbjct: 6 VYRIENIVATVNLGVDLDLERLAEVLPAAEYNPDQFPGLILRFQRPKISALIFRTGKMVC 65
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
TGAKSE++ + A + + + + G + D ++QN+V S ++ + +E L +
Sbjct: 66 TGAKSEDELKRAVKYLVKTLNQRGAQIQNDSDIQVQNIVASGNLHAEVNIEKAALLL-EN 124
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLIYRM P++V+L+F SGK+V T
Sbjct: 125 SMYEPEQFPGLIYRMSDPKVVILVFSSGKIVCT 157
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +++++K AL N+ Y P++F +I R+ +P+ L+FSSGK+VCTG
Sbjct: 99 QVQNIVASGNLHAEVNIEKAALLLENSMYEPEQFPGLIYRMSDPKVVILVFSSGKIVCTG 158
Query: 81 AKSEEDSRLAARK 93
AK E D +A RK
Sbjct: 159 AKKEADVAVAVRK 171
>gi|374325915|ref|YP_005084115.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
gi|356641184|gb|AET31863.1| hypothetical protein P186_0409 [Pyrobaculum sp. 1860]
Length = 186
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 29 VNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSR 88
+NLG +LDL+++A AEYNP +F +I+R+ +PR +ALIF +GKMVCTGAK+EED +
Sbjct: 1 MNLGVELDLEQLAERLTMAEYNPDQFPGLILRLTKPRISALIFRTGKMVCTGAKNEEDLK 60
Query: 89 LAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPG 147
A R ++++ G F + +IQN+V S ++ + LE VL + + YEPE FPG
Sbjct: 61 NAVRALVKLLKDHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLML-ENAMYEPEQFPG 119
Query: 148 LIYRMVKPRIVLLIFVSGKVVLT 170
LIYRM PR+V+LIF SGK+V T
Sbjct: 120 LIYRMSSPRVVILIFGSGKIVCT 142
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
D G VP Q+QNIV++ NL ++DL++ L NA Y P++F +I R+ PR
Sbjct: 72 DHGADVPFDPEVQIQNIVASGNLHAEVDLEQAVLMLENAMYEPEQFPGLIYRMSSPRVVI 131
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
LIF SGK+VCTGAKSE+D A +K ++ LG
Sbjct: 132 LIFGSGKIVCTGAKSEKDVATAVQKLYAQLKDLG 165
>gi|355723500|gb|AES07911.1| TATA box binding protein-like protein 1 [Mustela putorius furo]
Length = 185
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Query: 11 TPVDMGGSVPQ---LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
TP+D V + N+V C L+L+KIAL N Y + V+M++R+PR T
Sbjct: 2 TPMDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRIT 60
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRL 127
A I+SSGK++CTGA SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL
Sbjct: 61 ATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRL 120
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ +SYEPEL P + YR+ R L IF +G + +T
Sbjct: 121 PEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVT 163
>gi|82596850|ref|XP_726432.1| transcription initiation factor TFIId [Plasmodium yoelii yoelii
17XNL]
gi|23481840|gb|EAA17997.1| transcription initiation factor tfiid [Plasmodium yoelii yoelii]
Length = 285
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 104/155 (67%), Gaps = 6/155 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ NI+S+ NL ++DL+ +A+ ++AEYNP + +I+RI P+ TALIF SG+++ TG
Sbjct: 108 KIHNIISSANLDTEIDLRLVAISIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTG 167
Query: 81 AKSEEDSRLAARKYARIIQKL-GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
K++ DS +K +II+ + + +FKI+N++ S + P+RLE L H ++ +
Sbjct: 168 TKNKTDSIKGCKKIGKIIKLVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCN 227
Query: 140 YEPELFPGLIYRMVKP----RIVLLIFVSGKVVLT 170
YEPELF GL+YR KP + V+LIFVSGK+++T
Sbjct: 228 YEPELFAGLVYRY-KPTSNLKSVILIFVSGKIIIT 261
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
+++NI+++ N + L+ +A H Y P+ FA ++ R + ++ LIF SGK+
Sbjct: 199 KIENIIASANCNIPVRLEMLAHDHKEYCNYEPELFAGLVYRYKPTSNLKSVILIFVSGKI 258
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 259 IITGCKS 265
>gi|156094392|ref|XP_001613233.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium vivax Sal-1]
gi|148802107|gb|EDL43506.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium vivax]
Length = 250
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 102/154 (66%), Gaps = 4/154 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ NI+++ NL +DL+ +A+ RNAEYNP + +I+R+ +P+ TALIF +G+++ TG
Sbjct: 73 KIHNIIASANLCVDIDLRLVAISIRNAEYNPSKINTLIVRLNKPKCTALIFKNGRIMLTG 132
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
K++ D+ +K +II+ + + K F I+N++ S D P+RLE L H ++ +
Sbjct: 133 TKTKADAIYGCKKIGKIIKLVTNESVKLEGFNIENIIASADCNMPVRLEMLAHDHKEYCN 192
Query: 140 YEPELFPGLIYR---MVKPRIVLLIFVSGKVVLT 170
YEPELF GL+YR K + V+LIFVSGK+++T
Sbjct: 193 YEPELFAGLVYRYKPTSKLKSVILIFVSGKIIIT 226
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
++NI+++ + + L+ +A H Y P+ FA ++ R + + ++ LIF SGK+
Sbjct: 164 NIENIIASADCNMPVRLEMLAHDHKEYCNYEPELFAGLVYRYKPTSKLKSVILIFVSGKI 223
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 224 IITGCKS 230
>gi|355748887|gb|EHH53370.1| hypothetical protein EGM_14000, partial [Macaca fascicularis]
Length = 186
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL T+ +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKTNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|148224606|ref|NP_001083732.1| TATA box-binding protein-like protein 1 [Xenopus laevis]
gi|25091422|sp|Q9W6Z2.1|TBPL1_XENLA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; Short=xlTLF
gi|4689078|emb|CAB41487.1| TBP-like factor [Xenopus laevis]
gi|58702024|gb|AAH90226.1| TLF protein [Xenopus laevis]
Length = 186
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGLNVIYK-REVSKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE++++ AR+ AR +QKLGF KF +FK+ N++ C + F IRL + +SYE
Sbjct: 72 TSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLNEFTKQNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|161899533|ref|XP_001712992.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
gi|75756487|gb|ABA27380.1| TATA binding protein of transcription factor IID [Bigelowiella
natans]
Length = 204
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
+G ++ N+V +V L LDLKKIAL ++N E+N KRF +IMR R+P+ TA++F SG
Sbjct: 13 LGDIAYKIHNVVLSVRLDSILDLKKIALRSKNTEFNSKRFHGLIMRSRDPKATAIVFKSG 72
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
M+CTGAKSE+D + A K+ +II+ GF K +++I N+ + D K PI L + +
Sbjct: 73 SMICTGAKSEKDGKEAILKFVKIIRNAGFTDLKMQNYRITNIFATMDYKVPINLMQIHIA 132
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + +EPE+ GL+Y ++++ I+ SGK+ +T
Sbjct: 133 FPRITKHEPEVHRGLLYYPFDTKLLVTIYASGKITIT 169
>gi|170035005|ref|XP_001845362.1| TATA-box-binding protein [Culex quinquefasciatus]
gi|167876820|gb|EDS40203.1| TATA-box-binding protein [Culex quinquefasciatus]
Length = 429
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L+ IA N E+ + V M++R P TTA I+SSGK+ CTGA
Sbjct: 266 INNVVCSFSVRCHLNLRDIAQKGFNVEFR-RENGMVTMKLRRPYTTASIWSSGKITCTGA 324
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+ +++AAR+Y+R +QKLGF +F +F+I N++G+C + + I + + + +SYE
Sbjct: 325 TSEDSAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYE 384
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y++ P+ L IF +G + +T
Sbjct: 385 PELHPGVTYKLYNPKATLKIFSTGSITVT 413
>gi|288559645|ref|YP_003423131.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
gi|288542355|gb|ADC46239.1| TATA-box binding protein Tbp [Methanobrevibacter ruminantium M1]
Length = 181
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 111/163 (68%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT VD+ +++NIV++ ++G + L ++A ++N ++F ++ ++++P+T AL
Sbjct: 1 MTDVDI-----KIENIVASASIGKDIVLTEVAKALEGVDFNREQFPGLVFKLQDPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG--FPAKFLDFKIQNMVGSCDVKFPIRL 127
IFSSGK+VCTGAKS +DS+LA +K +++ + P +F D KIQN+V S +++ + L
Sbjct: 56 IFSSGKLVCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-DIKIQNIVASANLQSTLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 115 EAVAL-ELENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCT 156
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 51/69 (73%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L+ +AL N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLQSTLNLEAVALELENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRL 89
AK+++D+RL
Sbjct: 158 AKTKQDARL 166
>gi|52345772|ref|NP_001004932.1| TATA box-binding protein-like protein 1 [Xenopus (Silurana)
tropicalis]
gi|82183480|sp|Q6DIY4.1|TBPL1_XENTR RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|49522390|gb|AAH75401.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
gi|89272095|emb|CAJ81743.1| TBP-like 1 [Xenopus (Silurana) tropicalis]
Length = 186
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGLNVIYK-REVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE++++ AR+ AR +QKLGF KF +FK+ N++ C + F IRL + +SYE
Sbjct: 72 TSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLAEFTKQNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRTTLQIFSTGSITVT 160
>gi|123395858|ref|XP_001300812.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881909|gb|EAX87882.1| hypothetical protein TVAG_285070 [Trichomonas vaginalis G3]
Length = 233
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 3/165 (1%)
Query: 11 TPVDMGGSVPQLQNIVSTVNLGC-KLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
T D+ P++ N+++ C KL+L IA RNAEY PKR AV++RIR+P+ T L
Sbjct: 40 TTEDITSLKPKVVNVIALAQYSCNKLNLVSIASTIRNAEYKPKRIKAVVIRIRDPKATGL 99
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEG 129
+FS+GK+ G +S ED++ AA K+ +++Q++G+ K ++ I ++V + F I +
Sbjct: 100 VFSNGKINIVGCRSVEDAKRAAHKFRKMLQQIGYDVKLVNITISSIVATIHTPFNIAIAQ 159
Query: 130 LVLTHGQ--FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTVK 172
+ G F Y PE F GLIYR+ P+ +LIF SG +VLT K
Sbjct: 160 IASADGHKLFCQYRPEKFAGLIYRLTDPQCTMLIFQSGSIVLTAK 204
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL---HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+ +IV+T++ + + +IA H +Y P++FA +I R+ +P+ T LIF SG +V
Sbjct: 142 ISSIVATIHTPFNIAIAQIASADGHKLFCQYRPEKFAGLIYRLTDPQCTMLIFQSGSIVL 201
Query: 79 TGAKSEEDSRLAARKYARIIQKL 101
T AKSE+D + ++QK
Sbjct: 202 T-AKSEDDLTAGSNWIYPVLQKF 223
>gi|153791987|ref|NP_001093265.1| TATA box binding protein-like 1 [Takifugu rubripes]
gi|148910859|tpg|DAA06040.1| TPA_inf: TATA box binding protein-like 1 [Takifugu rubripes]
Length = 185
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T C L+L+ IAL N Y P++ V M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ISNVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE++++L AR+ AR +QKLGF KF FK+ N++ C + F I L + ++YE
Sbjct: 72 SSEDEAKLGARRLARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PEL+P +Y M +P+ + +F +G V +
Sbjct: 132 PELYPAAMYTMRQPKATIKVFSTGSVTI 159
>gi|307181017|gb|EFN68791.1| TATA box-binding protein-like protein 1 [Camponotus floridanus]
Length = 304
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 107/167 (64%), Gaps = 5/167 (2%)
Query: 8 PPMTPVDMGGSVPQL----QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
P M ++ P+L N+V + ++ C L+L++IAL+ N EY + + M++R
Sbjct: 60 PYMDHAEVHEEPPELDIVINNVVCSFSVRCHLNLREIALNGSNVEYR-RENGMITMKLRR 118
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P TTA I+SSGK+ CTGA SE +++AAR++AR +QKLGF +F ++++ N++G+C + F
Sbjct: 119 PYTTASIWSSGKVTCTGATSEIQAKIAARRFARSLQKLGFKVRFNNYRVVNVLGTCCMPF 178
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
I++ + H + + YEPEL PG+ Y++ + + L IF +G V +T
Sbjct: 179 AIKITLFSVHHKENADYEPELHPGVTYKLKELKATLKIFSTGSVTVT 225
>gi|124027807|ref|YP_001013127.1| transcription factor [Hyperthermus butylicus DSM 5456]
gi|123978501|gb|ABM80782.1| TATA-box binding protein [Hyperthermus butylicus DSM 5456]
Length = 202
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV+L +LDL+ I EYNP++F ++ R+ EP+ TALIF SGKMV TG
Sbjct: 25 KIENIVATVSLDQQLDLRLIERSILTVEYNPEQFPGLVYRLDEPKVTALIFKSGKMVVTG 84
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS +D A +K R ++K G P +IQN+V S ++ + LE LT + S
Sbjct: 85 AKSTKDLIEAVKKIVRNLKKHGIPIYGRPKVQIQNIVASANLNVCVDLERAALTL-ENSM 143
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM +PR+VLLIF SGK+V+T
Sbjct: 144 YEPEQFPGLIHRMDEPRVVLLIFSSGKMVIT 174
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL++ AL N+ Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 116 QIQNIVASANLNVCVDLERAALTLENSMYEPEQFPGLIHRMDEPRVVLLIFSSGKMVITG 175
Query: 81 AKSEEDSRLAARKYARIIQKL 101
AK EE+ A K ++KL
Sbjct: 176 AKREEEVYEAVNKIYEKLKKL 196
>gi|417396717|gb|JAA45392.1| Putative tata-box binding protein tbp component of tfiid and tfiiib
[Desmodus rotundus]
Length = 186
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti]
gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti]
Length = 584
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ C L+L+ IAL N E+ + V M++R P TTA I+SSGK+ CTGA
Sbjct: 291 INNVVCSFSVRCHLNLRDIALKGFNVEFR-RENGMVTMKLRRPYTTASIWSSGKITCTGA 349
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+ +++AAR+Y+R +QKLGF +F +F+I N++G+C + + I + + + +SYE
Sbjct: 350 TSEDQAKVAARRYSRCLQKLGFNVRFRNFRIVNVLGTCSMPWGIMIVNFSEKYKKDASYE 409
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG+ Y++ P+ L IF +G + +T
Sbjct: 410 PELHPGVTYKLYNPKATLKIFSTGSITVT 438
>gi|443686931|gb|ELT90049.1| hypothetical protein CAPTEDRAFT_75203, partial [Capitella teleta]
Length = 196
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + + C L+LK+IA + Y P+ V M++R+P TTA I+SSG + TG+
Sbjct: 26 INNVVCSFSTRCHLNLKRIAREGNHVIYKPEN-GMVSMKLRKPYTTANIWSSGSITATGS 84
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE D+++AAR+Y RI+QK+GF +F +++ N++G+C + F IR+ H + SYE
Sbjct: 85 TSEVDAKIAARRYCRILQKMGFRVRFGRYRVVNVLGTCSLPFGIRISQFAQDHHKQCSYE 144
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL PG Y M++PR L +F +G + +T
Sbjct: 145 PELHPGATYTMMEPRATLKLFTTGSITVT 173
>gi|45382085|ref|NP_990086.1| TATA box-binding protein-like protein 1 [Gallus gallus]
gi|326915870|ref|XP_003204235.1| PREDICTED: TATA box-binding protein-like protein 1-like [Meleagris
gallopavo]
gi|25091426|sp|Q9YGV8.1|TBPL1_CHICK RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TBP-like factor
gi|4520318|dbj|BAA75886.1| TBP-like protein [Gallus gallus]
Length = 183
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARCLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKTLRATLQIFSTGSITVT 160
>gi|21706933|gb|AAH33926.1| Tbpl1 protein [Mus musculus]
Length = 188
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|327290497|ref|XP_003229959.1| PREDICTED: TATA box-binding protein-like protein 1-like [Anolis
carolinensis]
Length = 186
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL ++ +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKSNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|413933537|gb|AFW68088.1| TATA-binding protein2 isoform 1 [Zea mays]
gi|413933538|gb|AFW68089.1| TATA-binding protein2 isoform 2 [Zea mays]
Length = 78
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 67/71 (94%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+NIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMVCTGAK
Sbjct: 7 RNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAK 66
Query: 83 SEEDSRLAARK 93
SE+ S+LAARK
Sbjct: 67 SEQQSKLAARK 77
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
F +N+V + ++ + L+ + L + + Y P+ F +I R+ +P+ LIF SGK+V
Sbjct: 4 FHDRNIVSTVNLDCKLDLKAIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVC 62
Query: 170 T 170
T
Sbjct: 63 T 63
>gi|12653225|gb|AAH00381.1| TBP-like 1 [Homo sapiens]
gi|167774053|gb|ABZ92461.1| TBP-like 1 [synthetic construct]
Length = 186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 3/150 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAA-VIMRIREPRTTALIFSSGKMVCTG 80
+ N+V C L+L+KIAL N Y KR A V+M++R+PR TA I+SSGK++CTG
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIY--KRDAGKVLMKLRKPRITATIWSSGKIICTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
A SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SY
Sbjct: 71 ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPEL P + YR+ R L IF +G + +T
Sbjct: 131 EPELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|4759234|ref|NP_004856.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|6755811|ref|NP_035733.1| TATA box-binding protein-like protein 1 [Mus musculus]
gi|115495315|ref|NP_001069758.1| TATA box-binding protein-like protein 1 [Bos taurus]
gi|150010556|ref|NP_001092762.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|187761295|ref|NP_001120673.1| TATA box binding protein-like 1 [Rattus norvegicus]
gi|356582420|ref|NP_001239188.1| TATA box-binding protein-like protein 1 [Canis lupus familiaris]
gi|358439409|ref|NP_001240605.1| TATA box-binding protein-like protein 1 [Homo sapiens]
gi|291397013|ref|XP_002714878.1| PREDICTED: TBP-like 1 [Oryctolagus cuniculus]
gi|301773832|ref|XP_002922334.1| PREDICTED: TATA box-binding protein-like protein 1-like [Ailuropoda
melanoleuca]
gi|311243911|ref|XP_003121240.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Sus scrofa]
gi|311243913|ref|XP_003121241.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Sus scrofa]
gi|332213363|ref|XP_003255790.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Nomascus leucogenys]
gi|332213365|ref|XP_003255791.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Nomascus leucogenys]
gi|390462056|ref|XP_003732780.1| PREDICTED: TATA box-binding protein-like protein 1-like [Callithrix
jacchus]
gi|397514939|ref|XP_003827726.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Pan
paniscus]
gi|397514941|ref|XP_003827727.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Pan
paniscus]
gi|402868220|ref|XP_003898208.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1 [Papio
anubis]
gi|402868222|ref|XP_003898209.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2 [Papio
anubis]
gi|410960078|ref|XP_003986624.1| PREDICTED: TATA box-binding protein-like protein 1 [Felis catus]
gi|426354625|ref|XP_004044755.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|426354627|ref|XP_004044756.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|61248508|sp|P62340.1|TBPL1_MOUSE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=TATA box-binding protein-related
factor 2; Short=TBP-related factor 2; AltName:
Full=TBP-like factor; AltName: Full=TBP-related protein
gi|61248509|sp|P62380.1|TBPL1_HUMAN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=21 kDa TBP-like
protein; AltName: Full=Second TBP of unique DNA protein;
Short=STUD; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|75076931|sp|Q4R848.1|TBPL1_MACFA RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|122143990|sp|Q32LB1.1|TBPL1_BOVIN RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|4581931|gb|AAD24800.1|AF130312_1 STUD protein [Homo sapiens]
gi|4741974|gb|AAD28785.1|AF136570_1 TATA box binding protein-related factor 2 [Homo sapiens]
gi|4218070|dbj|BAA74578.1| 21-kDa TBP-like protein [Mus musculus]
gi|4579753|dbj|BAA75218.1| TBP-like protein [Homo sapiens]
gi|17028477|gb|AAH17559.1| TBP-like 1 [Homo sapiens]
gi|26340704|dbj|BAC34014.1| unnamed protein product [Mus musculus]
gi|26347363|dbj|BAC37330.1| unnamed protein product [Mus musculus]
gi|67968732|dbj|BAE00724.1| unnamed protein product [Macaca fascicularis]
gi|81674129|gb|AAI09667.1| TBP-like 1 [Bos taurus]
gi|119568380|gb|EAW47995.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|119568381|gb|EAW47996.1| TBP-like 1, isoform CRA_a [Homo sapiens]
gi|148672813|gb|EDL04760.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148672815|gb|EDL04762.1| TATA box binding protein-like 1, isoform CRA_a [Mus musculus]
gi|148910857|tpg|DAA06039.1| TPA_inf: TATA box binding protein-like 1 [Pan troglodytes]
gi|158258072|dbj|BAF85009.1| unnamed protein product [Homo sapiens]
gi|189053895|dbj|BAG36402.1| unnamed protein product [Homo sapiens]
gi|208967921|dbj|BAG73799.1| TBP-like 1 [synthetic construct]
gi|281342972|gb|EFB18556.1| hypothetical protein PANDA_011296 [Ailuropoda melanoleuca]
gi|296483997|tpg|DAA26112.1| TPA: TATA box-binding protein-like protein 1 [Bos taurus]
gi|335775744|gb|AEH58674.1| TATA box-binding protein-like protein 1-like protein [Equus
caballus]
gi|343961185|dbj|BAK62182.1| TATA box-binding protein-like protein 1 [Pan troglodytes]
gi|351696954|gb|EHA99872.1| TATA box-binding protein-like protein 1 [Heterocephalus glaber]
gi|355562045|gb|EHH18677.1| hypothetical protein EGK_15331, partial [Macaca mulatta]
gi|380785063|gb|AFE64407.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|383409717|gb|AFH28072.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|384943312|gb|AFI35261.1| TATA box-binding protein-like protein 1 [Macaca mulatta]
gi|410207162|gb|JAA00800.1| TBP-like 1 [Pan troglodytes]
gi|410252770|gb|JAA14352.1| TBP-like 1 [Pan troglodytes]
gi|410291926|gb|JAA24563.1| TBP-like 1 [Pan troglodytes]
gi|410342865|gb|JAA40379.1| TBP-like 1 [Pan troglodytes]
gi|440912697|gb|ELR62245.1| TATA box-binding protein-like protein 1 [Bos grunniens mutus]
Length = 186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|197102368|ref|NP_001126267.1| TATA box-binding protein-like protein 1 [Pongo abelii]
gi|75054881|sp|Q5R7U8.1|TBPL1_PONAB RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor; AltName: Full=TBP-related
protein
gi|55730887|emb|CAH92162.1| hypothetical protein [Pongo abelii]
Length = 190
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|315427150|dbj|BAJ48765.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|315427168|dbj|BAJ48782.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
gi|343485784|dbj|BAJ51438.1| transcription initiation factor TFIID TATA-box-binding protein
[Candidatus Caldiarchaeum subterraneum]
Length = 187
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+VS+V L KLDL +I + EY P +F ++ R+ +P+T LIFSSGKMVCTG
Sbjct: 10 EIQNVVSSVTLFQKLDLAQIQRTFPDVEYKPAQFPGLVFRLAKPKTATLIFSSGKMVCTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKSEE+S A R + ++K GF + +IQN+V S D+ I LE T
Sbjct: 70 AKSEEESIRAVRTVVKALKKEGFVIREEPQIEIQNIVASIDLHGRIDLERAATTLENV-M 128
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM P++V+L+F SGK+V T
Sbjct: 129 YEPEQFPGLIYRMNSPKVVILMFASGKLVCT 159
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++++L ++DL++ A N Y P++F +I R+ P+ L+F+SGK+VCTG
Sbjct: 101 EIQNIVASIDLHGRIDLERAATTLENVMYEPEQFPGLIYRMNSPKVVILMFASGKLVCTG 160
Query: 81 AKSEEDSRLAARKYARIIQK 100
AK E+D A K +++++
Sbjct: 161 AKYEKDVYDAVNKLQQLLEE 180
>gi|403282108|ref|XP_003932505.1| PREDICTED: TATA box-binding protein-like protein 1 [Saimiri
boliviensis boliviensis]
Length = 186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|354500033|ref|XP_003512107.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cricetulus
griseus]
gi|344257078|gb|EGW13182.1| TATA box-binding protein-like protein 1 [Cricetulus griseus]
Length = 186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|444729025|gb|ELW69456.1| TATA box-binding protein-like protein 1 [Tupaia chinensis]
Length = 186
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|224048129|ref|XP_002191326.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 1
[Taeniopygia guttata]
gi|449497471|ref|XP_004174223.1| PREDICTED: TATA box-binding protein-like protein 1 isoform 2
[Taeniopygia guttata]
Length = 183
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|149722967|ref|XP_001504421.1| PREDICTED: TATA box-binding protein-like protein 1-like [Equus
caballus]
Length = 186
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|426234833|ref|XP_004011396.1| PREDICTED: TATA box-binding protein-like protein 1 [Ovis aries]
Length = 186
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|126311117|ref|XP_001380665.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Monodelphis domestica]
gi|395534983|ref|XP_003769512.1| PREDICTED: TATA box-binding protein-like protein 1 [Sarcophilus
harrisii]
Length = 186
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKALRATLQIFSTGSITVT 160
>gi|348565514|ref|XP_003468548.1| PREDICTED: TATA box-binding protein-like protein 1-like [Cavia
porcellus]
Length = 165
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|449274009|gb|EMC83325.1| TATA box-binding protein-like protein 1 [Columba livia]
Length = 183
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKTLRATLQIFSTGSITVT 160
>gi|149032878|gb|EDL87733.1| rCG41948, isoform CRA_b [Rattus norvegicus]
gi|149032879|gb|EDL87734.1| rCG41948, isoform CRA_b [Rattus norvegicus]
Length = 218
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTVK 172
PEL P + YR+ R L IF +G + +T K
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVTEK 162
>gi|260797205|ref|XP_002593594.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
gi|229278820|gb|EEN49605.1| hypothetical protein BRAFLDRAFT_284100 [Branchiostoma floridae]
Length = 205
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Query: 4 STPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIRE 63
S PG P + + N+V + C L+L+ IAL+ N Y + V M++R
Sbjct: 19 SVPGEPAAQEQTSLDI-DIANVVCSFRARCHLNLRMIALNGANVIYK-RELGKVTMKLRR 76
Query: 64 PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKF 123
P TA I+SSGK+VCTGA+SE+D++ AR+ AR +Q +GF F +FK+ N++G C + F
Sbjct: 77 PYCTANIWSSGKIVCTGARSEDDAKKGARRCARTLQNMGFQVHFSEFKVVNVLGICAMPF 136
Query: 124 PIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
I++ H + +SYEPEL PG+ Y++ P+ V+ IF +G + T
Sbjct: 137 TIKITLFSKHHKENASYEPELHPGVTYKIRDPKAVMKIFSTGSITCT 183
>gi|82179859|sp|Q5U385.1|TBPL1_DANRE RecName: Full=TATA box-binding protein-like protein 1;
Short=TBP-like protein 1; AltName: Full=TATA box-binding
protein-related factor 2; Short=TBP-related factor 2;
AltName: Full=TBP-like factor
gi|55250384|gb|AAH85661.1| TBP-like 1 [Danio rerio]
Length = 186
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+VS C L+L+ I L N Y P+ V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 VTNVVSVFRTRCHLNLRTIGLEGTNVIYKPE-VGKVLMKLRKPRITASIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++L AR+ AR +QK+GF +F DFK+ N++ C + F IRL + +SYE
Sbjct: 72 TSEEEAKLGARRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P YR+ R + +F +G + +T
Sbjct: 132 PELHPAASYRIKNLRSTVQVFSTGNITVT 160
>gi|345328513|ref|XP_001506923.2| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Ornithorhynchus anatinus]
gi|345328515|ref|XP_003431275.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Ornithorhynchus anatinus]
Length = 183
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF F DF++ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIFTDFRVVNVLAVCNMPFEIRLPEFTKKNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKTLRATLQIFSTGSITVT 160
>gi|347523992|ref|YP_004781562.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
gi|343460874|gb|AEM39310.1| TATA-box binding family protein [Pyrolobus fumarii 1A]
Length = 207
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L LDL I N EYNP++F ++ R+ EP+ TALIF SGKMV TG
Sbjct: 27 RIENIVATVTLDQNLDLYAIETSIPNVEYNPEQFPGLVFRLEEPKVTALIFKSGKMVVTG 86
Query: 81 AKSEEDSRLAARKYARIIQK-----LGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
AKS + A +K R +++ +G P +IQN+V S ++ + LE LT
Sbjct: 87 AKSTQQLIEAVKKIIRELKRHGIVIVGRP----KVQIQNIVASANLNVCVDLEKAALTL- 141
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ S YEPE FPGLIYRM PR+VLLIF SGK+V+T
Sbjct: 142 ENSMYEPEQFPGLIYRMQNPRVVLLIFSSGKMVIT 176
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL+K AL N+ Y P++F +I R++ PR LIFSSGKMV TG
Sbjct: 118 QIQNIVASANLNVCVDLEKAALTLENSMYEPEQFPGLIYRMQNPRVVLLIFSSGKMVITG 177
Query: 81 AKSEEDSRLA 90
AK EE+ + A
Sbjct: 178 AKREEEVKEA 187
>gi|294939320|ref|XP_002782411.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894017|gb|EER14206.1| TATA-box factor binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 255
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREP-RTTALIFSSGK 75
G P L N++++ LG +D K IA + RN EYNP++ ++R P + T I+ +GK
Sbjct: 75 GMNPVLDNVIASFELGIDIDPKTIAFNLRNCEYNPRKHNCAVIRFTSPTKATCHIYRNGK 134
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF--PAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
++ GA + E ++ +K ++++++ KF++FK++NM+ S DV+FPIRLE L
Sbjct: 135 VMINGAYTIELAKKIGKKIVKLVRRITHNPSIKFINFKVENMIASVDVRFPIRLERLAYD 194
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
H +++YEPEL GL +R+ P++V++I+VSGK+
Sbjct: 195 HSAYATYEPELSSGLYFRLFDPKLVIMIYVSGKI 228
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+++N++++V++ + L+++A H+ A Y P+ + + R+ +P+ +I+ SGK+
Sbjct: 172 KVENMIASVDVRFPIRLERLAYDHSAYATYEPELSSGLYFRLFDPKLVIMIYVSGKISFI 231
Query: 80 GAKSEED 86
G K+ +D
Sbjct: 232 GGKTLDD 238
>gi|116753474|ref|YP_842592.1| transcription factor [Methanosaeta thermophila PT]
gi|121693723|sp|A0B5H8.1|TBP_METTP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116664925|gb|ABK13952.1| TATA binding protein of transcription factor TFIID [Methanosaeta
thermophila PT]
Length = 183
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
S ++N+V++ L + DL KI AEYN ++F ++ R++ P+ LIF+SGK+V
Sbjct: 3 STINIENVVASTKLADEFDLVKIESELEGAEYNKEKFPGLVYRVKSPKAAFLIFTSGKVV 62
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTHG 135
CTGAK+ ED R AR ++ +GF L + +QN+V S D+K + L + L G
Sbjct: 63 CTGAKNVEDVRTVITNMARTLKSIGFDNINLEPEIHVQNIVASADLKTDLNLNAIALGLG 122
Query: 136 -QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ +P++V+LIF SGK+V+T
Sbjct: 123 LENIEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVVT 158
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHA--RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QNIV++ +L L+L IAL N EY P++F ++ RI++P+ LIFSSGK+V
Sbjct: 98 HVQNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLVYRIKQPKVVVLIFSSGKLVV 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG KS E+ R + ++ LG
Sbjct: 158 TGGKSPEECEEGVRIVRQQLENLGL 182
>gi|45387857|ref|NP_991285.1| TATA box-binding protein-like protein 1 [Danio rerio]
gi|33323633|gb|AAQ07595.1|AF503448_1 TBP-like factor [Danio rerio]
Length = 186
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+VS C L+L+ I L N Y P+ V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 VTNVVSVFRTRCHLNLRTIGLEGTNVIYKPE-VGKVLMKLRKPRITASIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++L +R+ AR +QK+GF +F DFK+ N++ C + F IRL + +SYE
Sbjct: 72 TSEEEAKLGSRRLARCLQKMGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P YR+ R + +F +G + +T
Sbjct: 132 PELHPAASYRIKNLRSTVQVFSTGNITVT 160
>gi|328719261|ref|XP_003246709.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 1
[Acyrthosiphon pisum]
gi|328719263|ref|XP_003246710.1| PREDICTED: TATA box-binding protein-like protein 1-like isoform 2
[Acyrthosiphon pisum]
Length = 288
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 101/151 (66%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ N+ ++ N+ L+L+ +ALH N EY ++ A ++M++R+P TA+I+SSGK+VC G
Sbjct: 55 NISNVSASFNVKSHLNLRYLALHGHNVEYKREK-AKLVMKLRKPSATAIIWSSGKIVCIG 113
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
+ SE DS++A+++ ARIIQ+LG+ AKF FKI N++GSC + F IR+ + S
Sbjct: 114 SASEYDSKIASKRIARIIQRLGYSDAKFSSFKIINVLGSCSLPFSIRIIQFSEKYKLNSQ 173
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPEL PG+ YR+ + + L I+ +G + +
Sbjct: 174 YEPELNPGVTYRIKEFKATLKIYSTGSITVN 204
>gi|330507959|ref|YP_004384387.1| transcription factor TFIID [Methanosaeta concilii GP6]
gi|328928767|gb|AEB68569.1| transcription factor TFIID [Methanosaeta concilii GP6]
Length = 183
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
S ++N+V++ L + DL KI AEYN ++F ++ R++ PR LIF+SGK+V
Sbjct: 3 STINIENVVASTKLAEEFDLHKIEAELEGAEYNKEKFPGLVYRVKAPRAAFLIFTSGKVV 62
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTHG 135
CTGAK+ ED R A+ ++ +GF L + +QN+V S D+K + L + L G
Sbjct: 63 CTGAKNVEDVRTVITNMAQTLKSIGFENIDLEPEIHVQNIVASADLKTDLNLNAIALGLG 122
Query: 136 -QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 123 LENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVT 158
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHA--RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QNIV++ +L L+L IAL N EY P++F ++ RI+ P+ LIFSSGK+V
Sbjct: 98 HVQNIVASADLKTDLNLNAIALGLGLENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVV 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG KS E+ + ++ +G
Sbjct: 158 TGGKSPEECEEGVKIVREQLENMGL 182
>gi|410916461|ref|XP_003971705.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V+T GC+L+L I +N YN +R V M++R+PR TA I++SGK++C GA S
Sbjct: 15 NVVATFRTGCRLNLHTIGSKGKNVIYNTRR-GKVTMQLRKPRITASIWASGKVICIGASS 73
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPE 143
E++++L AR+ AR +QKLGF KF FK+ N++ C + F I L + ++YEPE
Sbjct: 74 EDEAKLGARRIARCLQKLGFKVKFSAFKVVNVMAGCSMPFKISLIDFTKKNRPIATYEPE 133
Query: 144 LFPGLIYRMVKPRIVLLIFVSGKVVL 169
L+P +Y M +P+ + +F +G V +
Sbjct: 134 LYPAAMYTMRQPKATIKVFSTGSVTI 159
>gi|321468361|gb|EFX79346.1| hypothetical protein DAPPUDRAFT_304868 [Daphnia pulex]
Length = 297
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + ++ L+LK+IA N EY + V MR+R+P TTA I+SSGK+ CTGA
Sbjct: 72 INNVVCSFSVKSHLNLKQIAQSGYNVEYR-RENGMVTMRLRKPYTTASIWSSGKVTCTGA 130
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
SE++++ AAR+ R + KLG+P + +++++ N++G+C + F I++ H +SY
Sbjct: 131 TSEDEAKQAARRITRSVSKLGYPKLRLVNYRVVNVLGTCTMPFAIKITPFSAKHRDIASY 190
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
EPEL PG+ YR+ +P+ L IF +G + +T
Sbjct: 191 EPELHPGVTYRLKEPKATLKIFSTGSITVTA 221
>gi|148642780|ref|YP_001273293.1| transcription factor [Methanobrevibacter smithii ATCC 35061]
gi|222445725|ref|ZP_03608240.1| hypothetical protein METSMIALI_01367 [Methanobrevibacter smithii
DSM 2375]
gi|261349727|ref|ZP_05975144.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
gi|166227821|sp|A5UL47.1|TBP_METS3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|148551797|gb|ABQ86925.1| transcription initiation factor TFIID TATA binding protein
[Methanobrevibacter smithii ATCC 35061]
gi|222435290|gb|EEE42455.1| transcription factor [Methanobrevibacter smithii DSM 2375]
gi|288861682|gb|EFC93980.1| TATA-box-binding protein [Methanobrevibacter smithii DSM 2374]
Length = 181
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 110/163 (67%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT VD+ +++NIV++ ++G + L +++ +N ++F ++ ++++P+T AL
Sbjct: 1 MTDVDI-----KIENIVASASIGKDIVLTEVSEALEGVNFNREQFPGLVFKLKDPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG--FPAKFLDFKIQNMVGSCDVKFPIRL 127
IFSSGK+VCTGAKS +DS+LA +K +++ + P +F + KIQN+V S +++ + L
Sbjct: 56 IFSSGKLVCTGAKSIDDSKLAIKKTVDLMRTIDTEIPHEF-EIKIQNIVASANLESTLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 115 EAVAL-ELEDTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCT 156
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L+ +AL + EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLESTLNLEAVALELEDTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAA-RKYARI 97
AK+ D++L R Y R+
Sbjct: 158 AKTRSDAKLGVERAYDRL 175
>gi|159147345|gb|ABW91067.1| TATA box-binding protein related factor 2 [Bos taurus]
Length = 186
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE+++ AR+ AR +QKLGF DFK+ N++ C++ F IRL + +SYE
Sbjct: 72 TSEEEAKFGARRLARSLQKLGFQVIXTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKSLRATLQIFSTGSITVT 160
>gi|387018946|gb|AFJ51591.1| TATA box-binding protein-like protein 1 [Crotalus adamanteus]
Length = 183
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++ AR+ AR +QKLGF F DFK+ N++ C++ F +RL + +SYE
Sbjct: 72 TSEAEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEVRLPEFTRNNRPHASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P + YR+ R L IF +G + +T
Sbjct: 132 PELHPAVCYRIKTLRATLQIFSTGSITVT 160
>gi|410916287|ref|XP_003971618.1| PREDICTED: TATA box-binding protein-like protein 1-like [Takifugu
rubripes]
Length = 185
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T GC+LDL I +N Y PK+ V M++R+PR TA I++SGK++C GA
Sbjct: 13 ISNVVATFTTGCRLDLHTIGSKGKNVIYKPKQ-GTVTMQLRKPRITANIWASGKVICIGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE D++L AR+ AR +QKLGF F FK+ N++ +C + F I L + + ++YE
Sbjct: 72 SSEADAKLGARRIARCLQKLGFGVTFGTFKVVNVMATCSMPFKISLVDFTMMNRFRATYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PEL P +Y M +P+ + + +G V +
Sbjct: 132 PELHPAALYTMKEPKATIKAYATGSVTI 159
>gi|417904|sp|P32086.1|TBP_PLAFA RecName: Full=TATA-box-binding protein; AltName: Full=TATA
sequence-binding protein; AltName: Full=TATA-binding
factor; AltName: Full=TATA-box factor; AltName:
Full=Transcription initiation factor TFIID TBP subunit
gi|5911375|gb|AAD55768.1|AF177280_1 TATA-binding protein [Plasmodium falciparum]
gi|160700|gb|AAA29769.1| TATA-binding protein [Plasmodium falciparum]
gi|38194140|gb|AAR13208.1| TATA-binding protein [synthetic construct]
Length = 228
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ NI+S+ NL ++L+ +A+ RNAEYNP + +I+R+ +P+ TALIF +G+++ TG
Sbjct: 51 NIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTG 110
Query: 81 AKSEEDSRLAARKYARIIQKLG-FPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
++++DS + +K A+II+ + KF +FKI+N++ S + PIRLE L H ++ +
Sbjct: 111 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 170
Query: 140 YEPELFPGLIYRMVKP----RIVLLIFVSGKVVLT 170
YEPELF GL+YR KP + V+LIFVSGK+++T
Sbjct: 171 YEPELFAGLVYRY-KPTSNLKSVILIFVSGKIIIT 204
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
+++NI+++ N + L+ +A H Y P+ FA ++ R + ++ LIF SGK+
Sbjct: 142 KIENIIASANCNIPIRLEVLAHDHKEYCNYEPELFAGLVYRYKPTSNLKSVILIFVSGKI 201
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 202 IITGCKS 208
>gi|358340644|dbj|GAA48493.1| TATA-box-binding protein [Clonorchis sinensis]
Length = 170
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 75/103 (72%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
+ P PG T + G P + N+++TVNLGC ++L+K+ LH R+AEYNPKRF +MR
Sbjct: 19 LRPVPPGDEPTKLMYGLRKPMIHNVIATVNLGCHIELRKVVLHIRSAEYNPKRFPGAVMR 78
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+REPR T LIF +GKMVCTGA+SE + L ARK ARI+QK+GF
Sbjct: 79 LREPRVTCLIFGTGKMVCTGARSEAECHLGARKCARILQKIGF 121
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 112 IQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
I N++ + ++ I L +VL H + + Y P+ FPG + R+ +PR+ LIF +GK+V T
Sbjct: 40 IHNVIATVNLGCHIELRKVVL-HIRSAEYNPKRFPGAVMRLREPRVTCLIFGTGKMVCT 97
>gi|124506045|ref|XP_001351620.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
gi|23504547|emb|CAD51427.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium falciparum 3D7]
Length = 327
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ NI+S+ NL ++L+ +A+ RNAEYNP + +I+R+ +P+ TALIF +G+++ TG
Sbjct: 150 NIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRIMLTG 209
Query: 81 AKSEEDSRLAARKYARIIQKLG-FPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
++++DS + +K A+II+ + KF +FKI+N++ S + PIRLE L H ++ +
Sbjct: 210 TRTKKDSIMGCKKIAKIIKIVTKDKVKFCNFKIENIIASANCNIPIRLEVLAHDHKEYCN 269
Query: 140 YEPELFPGLIYRMVKP----RIVLLIFVSGKVVLT 170
YEPELF GL+YR KP + V+LIFVSGK+++T
Sbjct: 270 YEPELFAGLVYRY-KPTSNLKSVILIFVSGKIIIT 303
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
+++NI+++ N + L+ +A H Y P+ FA ++ R + ++ LIF SGK+
Sbjct: 241 KIENIIASANCNIPIRLEVLAHDHKEYCNYEPELFAGLVYRYKPTSNLKSVILIFVSGKI 300
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 301 IITGCKS 307
>gi|47205581|emb|CAF96147.1| unnamed protein product [Tetraodon nigroviridis]
gi|47224248|emb|CAG09094.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T C L+L+ IAL N Y P++ V M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ISNVVATFRTRCHLNLRTIALEGNNVIYKPEQ-GTVTMKLRKPRITANIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+++++ AR+ AR +QKLGF F FK+ N++ +C + F I L + ++YE
Sbjct: 72 SSEDEAKMGARRLARCLQKLGFKVSFSAFKVVNVMATCAMPFKISLIDFTKRNRPIATYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PEL P +Y M P+ + +F +G V +
Sbjct: 132 PELHPAAMYTMRHPKATVKVFATGSVTI 159
>gi|148672814|gb|EDL04761.1| TATA box binding protein-like 1, isoform CRA_b [Mus musculus]
Length = 206
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 89/138 (64%), Gaps = 1/138 (0%)
Query: 33 CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAAR 92
C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA SEE+++ AR
Sbjct: 44 CHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR 102
Query: 93 KYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRM 152
+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYEPEL P + YR+
Sbjct: 103 RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRI 162
Query: 153 VKPRIVLLIFVSGKVVLT 170
R L IF +G + +T
Sbjct: 163 KSLRATLQIFSTGSITVT 180
>gi|72133443|ref|XP_798726.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Strongylocentrotus purpuratus]
Length = 325
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V + C L+L++I + N EY + + V MR R P TA I+SSGK+ TG
Sbjct: 102 INNVVCAFGVRCHLNLRRIGQYGSNVEYR-REYGKVNMRFRRPSATATIWSSGKITITGN 160
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SEE ++ AR+ AR +QKLGF + +K+ N++G+C + F IR+ H +SYE
Sbjct: 161 DSEEHAKKNARRCARALQKLGFNVRLSKYKVVNVLGTCSMPFAIRIRDFSEKHQNSASYE 220
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171
PEL P + Y++ +PR L IF +G + +T
Sbjct: 221 PELHPAVTYKLYQPRATLKIFSTGSITVTA 250
>gi|312136408|ref|YP_004003745.1| tata binding protein of transcription factor tfiid [Methanothermus
fervidus DSM 2088]
gi|311224127|gb|ADP76983.1| TATA binding protein of transcription factor TFIID [Methanothermus
fervidus DSM 2088]
Length = 183
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 103/152 (67%), Gaps = 4/152 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ LG +DL KI+ ++ +N K+F ++ ++ +P+T ALIF SGK+VCTG
Sbjct: 9 EIENIVASATLGRPIDLSKISKALKSVNFNRKQFPGLVYKLDKPKTAALIFGSGKLVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
AKS EDS A + I+++ P + + KIQN+V S ++ P+ L+ + +T + +
Sbjct: 69 AKSVEDSIKAIKTTVNKIREVDPDIPEDY-EIKIQNIVASANLSKPLNLDEIAMTL-ENT 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ KP++VLL+F SGKVV T
Sbjct: 127 EYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCT 158
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 55/83 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L +IA+ N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 100 KIQNIVASANLSKPLNLDEIAMTLENTEYEPEQFPGLVYRLDKPKVVLLLFGSGKVVCTG 159
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
A+ +D++L +K +++L
Sbjct: 160 ARDPKDAKLGVKKTKERLKELNL 182
>gi|149032877|gb|EDL87732.1| rCG41948, isoform CRA_a [Rattus norvegicus]
Length = 238
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 33 CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAAR 92
C L+L+KIAL N Y + V+M++R+PR TA I+SSGK++CTGA SEE+++ AR
Sbjct: 44 CHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGAR 102
Query: 93 KYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRM 152
+ AR +QKLGF F DFK+ N++ C++ F IRL + +SYEPEL P + YR+
Sbjct: 103 RLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRI 162
Query: 153 VKPRIVLLIFVSGKVVLTVK 172
R L IF +G + +T K
Sbjct: 163 KSLRATLQIFSTGSITVTEK 182
>gi|386001066|ref|YP_005919365.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
gi|357209122|gb|AET63742.1| TATA-box-binding protein [Methanosaeta harundinacea 6Ac]
Length = 183
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
S ++N+V++ L + DL KI AEYN ++F ++ R++ PR LIF+SGK+V
Sbjct: 3 STINIENVVASTKLAEEFDLIKIEAELEGAEYNKEKFPGLVYRVKSPRAAFLIFTSGKVV 62
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHG 135
CTGAK+ ED R A+ ++ +GF LD +QN+V S D+K + + L G
Sbjct: 63 CTGAKNVEDVRTVITNMAQTLKSIGFEDVNLDPEIHVQNIVASADLKTDLNPNAIALGLG 122
Query: 136 -QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 123 LENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVVT 158
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHA--RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QNIV++ +L L+ IAL N EY P++F ++ RI+ P+ LIFSSGK+V
Sbjct: 98 HVQNIVASADLKTDLNPNAIALGLGLENIEYEPEQFPGLVYRIKTPKVVVLIFSSGKLVV 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG KS E+ + ++ LG
Sbjct: 158 TGGKSPEECEEGVKIVRVQLENLGL 182
>gi|325959799|ref|YP_004291265.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
gi|325331231|gb|ADZ10293.1| TATA-box-binding protein [Methanobacterium sp. AL-21]
Length = 181
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT V++ +++NIV++ LG LDL ++A EYN ++F ++ +++EP+T AL
Sbjct: 1 MTTVEI-----KVENIVASAALGKSLDLPQVAPALEGVEYNSEQFPGLVYKLKEPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG--FPAKFLDFKIQNMVGSCDVKFPIRL 127
IF SGK+VCTGAKS EDS+ A ++ L P +F + KIQN+V S ++ + L
Sbjct: 56 IFGSGKLVCTGAKSIEDSKKAIHIAVDKMRALDTEIPHEF-EIKIQNIVASANLGKTLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 115 ESVALDL-ENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCT 156
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NLG L+L+ +AL N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLGKTLNLESVALDLENTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKS ED++L K + +L
Sbjct: 158 AKSFEDAQLGVEKTKERLAELDL 180
>gi|341582887|ref|YP_004763379.1| transcription factor [Thermococcus sp. 4557]
gi|340810545|gb|AEK73702.1| transcription factor [Thermococcus sp. 4557]
Length = 190
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +L+L+K+ N++YNP+ F +I R EP+ LIFS
Sbjct: 2 VDMSNVKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS ED A K ++++K+G AKF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVNKLIQMLKKIG--AKFARAPQIDIQNMVFSGDIGMEFNLDA 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 120 VALSLPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEHDAWEAVRKLLRELEKYGL 183
>gi|84489891|ref|YP_448123.1| transcription factor [Methanosphaera stadtmanae DSM 3091]
gi|121731087|sp|Q2NFC3.1|TBP_METST RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|84373210|gb|ABC57480.1| TATA-box binding protein [Methanosphaera stadtmanae DSM 3091]
Length = 183
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ LG L+L KIA N EYN ++F ++ ++++P+T ALIF SGK+VCTG
Sbjct: 7 KVENIVASATLGKSLELPKIAPALENVEYNLEQFPGLVFKLKDPKTAALIFGSGKLVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLG--FPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
AK EDS A I++L P +F + KIQN+V S ++ + LE + L + +
Sbjct: 67 AKCIEDSIKAIHMTVDKIRELDTEIPEEF-EIKIQNIVASANLGKVLNLEAVALDL-ENT 124
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 125 EYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCT 156
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NLG L+L+ +AL N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KIQNIVASANLGKVLNLEAVALDLENTEYEPEQFPGLVYRLSDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARKY-ARIIQ 99
AK+ + + L +K R+I+
Sbjct: 158 AKTADQALLGVQKTKERLIE 177
>gi|432945913|ref|XP_004083749.1| PREDICTED: TATA box-binding protein-like protein 1-like [Oryzias
latipes]
Length = 187
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T C L+L+ IAL N Y P+ V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVATFRTRCHLNLRTIALEGINVIYKPE-VGKVLMKLRKPRITASIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE++++L AR+ AR +QKLGF +F FK+ N++ C + F I L + +SYE
Sbjct: 72 TSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFSIHLVDFTKNNRPIASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P YR+ + + +F +G + +T
Sbjct: 132 PELHPAATYRIKNIKATVQVFSTGSLTIT 160
>gi|435846586|ref|YP_007308836.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|433672854|gb|AGB37046.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
Length = 185
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 94/151 (62%), Gaps = 3/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ + G + DL+ +A NA+Y+PK F ++ RI EP++ LIF +GK+VCTG+
Sbjct: 10 IENVVASGDTGREFDLQTLAEDLDNAQYDPKTFPGIVYRIDEPKSAGLIFHTGKVVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLV--LTHGQFSS 139
KS ED + ++LG + F +QN+V S D+ + + L + L GQ
Sbjct: 70 KSVEDINKSVESIFNAFERLGISIEENPFTVQNIVSSADLGYSLNLNAVAVGLGLGQI-E 128
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK V+T
Sbjct: 129 YEPEQFPGLVYRLDEPDVVALLFGSGKTVIT 159
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L EY P++F ++ R+ EP AL+F SGK V T
Sbjct: 100 VQNIVSSADLGYSLNLNAVAVGLGLGQIEYEPEQFPGLVYRLDEPDVVALLFGSGKTVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G +D+ A A ++ LG
Sbjct: 160 GGTEVQDATNAVNVIASKLEDLGL 183
>gi|289193261|ref|YP_003459202.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
gi|288939711|gb|ADC70466.1| TATA-box binding family protein [Methanocaldococcus sp. FS406-22]
Length = 180
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E++ +A +K + +++ G + D KIQNMV + D+ L+ + L + + YEP
Sbjct: 69 KEEAEIAIKKVIKELKEAGMDVIENPDIKIQNMVATADLGIEPNLDDIALMV-EGTEYEP 127
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 156
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 157 LKSEEDAKRALKKILDTIKEV 177
>gi|68074137|ref|XP_678983.1| transcription initiation factor TFiid, TATA-binding protein
[Plasmodium berghei strain ANKA]
gi|56499609|emb|CAH98178.1| transcription initiation factor TFiid, TATA-binding protein,
putative [Plasmodium berghei]
Length = 252
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 104/155 (67%), Gaps = 6/155 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ NI+S+ NL +++L+ +A+ ++AEYNP + +I+RI P+ TALIF SG+++ TG
Sbjct: 75 KIHNIISSANLDAEINLRLVAVSIKSAEYNPSKINTLIIRINNPKCTALIFKSGRIMLTG 134
Query: 81 AKSEEDSRLAARKYARIIQKL-GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
KS+ DS +K +II+ + + +FKI+N++ S + P+RLE L H ++ +
Sbjct: 135 TKSKTDSIKGCKKIGKIIKIVTNQNIRLKNFKIENIIASANCNIPVRLEMLAHDHKEYCN 194
Query: 140 YEPELFPGLIYRMVKP----RIVLLIFVSGKVVLT 170
YEPELF GL+YR KP + V+LIFVSGK+++T
Sbjct: 195 YEPELFAGLVYRY-KPASNLKSVILIFVSGKIIIT 228
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIR---EPRTTALIFSSGKM 76
+++NI+++ N + L+ +A H Y P+ FA ++ R + ++ LIF SGK+
Sbjct: 166 KIENIIASANCNIPVRLEMLAHDHKEYCNYEPELFAGLVYRYKPASNLKSVILIFVSGKI 225
Query: 77 VCTGAKS 83
+ TG KS
Sbjct: 226 IITGCKS 232
>gi|212224460|ref|YP_002307696.1| transcription factor [Thermococcus onnurineus NA1]
gi|226703563|sp|B6YXI6.1|TBP_THEON RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|212009417|gb|ACJ16799.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Thermococcus onnurineus NA1]
Length = 192
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +L+L+K+ N++YNP+ F +I R EP+ LIFS
Sbjct: 2 VDMSNVKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS ED A K ++++++G AKF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVNKLIQMLKRIG--AKFQRAPQIDIQNMVFSGDIGMEFNLDA 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 120 VALSLPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEHDAWEAVRKLLRELEKYGL 183
>gi|317575757|ref|NP_001188053.1| TATA box-binding protein-like protein 1 [Ictalurus punctatus]
gi|308324695|gb|ADO29482.1| tata box-binding protein-like protein 1 [Ictalurus punctatus]
Length = 186
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+VS C L+L+ I L N Y P+ V+M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ITNVVSVFRTRCHLNLRTIGLEGNNVIYRPE-VGKVLMKLRKPRITASIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+++++ AR+ AR +QK+GF +F DFK+ N++ C + F IRL + +SYE
Sbjct: 72 TSEDEAKVGARRLARCLQKIGFKVRFSDFKVVNVLAVCSMPFQIRLIEFTKNNRPIASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EL P YR+ R + +F +G V +T
Sbjct: 132 LELHPAASYRIKTLRATVQVFSTGSVTVT 160
>gi|410722027|ref|ZP_11361343.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
gi|410597924|gb|EKQ52528.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanobacterium sp. Maddingley MBC34]
Length = 181
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 102/152 (67%), Gaps = 4/152 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ +G LDL ++A EYN ++F ++ +I+EP+T ALIF SGK+VCTG
Sbjct: 7 KVENIVTSATIGKDLDLPQVAPALEGVEYNLEQFPGLVYKIKEPKTAALIFGSGKLVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLG--FPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
AKS E+S+ A ++ L P ++ + K+QN+V S +++ + LE + L + +
Sbjct: 67 AKSIENSKKAIHIAVDKMRTLDPEIPHEY-EMKVQNIVASANLEKTLNLEAVALDL-ENT 124
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 125 EYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCT 156
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L+ +AL N EY P++F ++ R+ EP+ L+F SGK+VCTG
Sbjct: 98 KVQNIVASANLEKTLNLEAVALDLENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AK+ D++L K + +L
Sbjct: 158 AKTIADAQLGVEKTKERLSELDL 180
>gi|147920361|ref|YP_685866.1| transcription factor [Methanocella arvoryzae MRE50]
gi|110621262|emb|CAJ36540.1| TATA-box binding protein E [Methanocella arvoryzae MRE50]
Length = 188
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ D ++N+V++ +G ++DLK + L A+Y+P++F ++ R ++P+T AL
Sbjct: 1 MSKADEAKKTITIENVVASTAIGQEIDLKSVTLALDGADYDPEQFPGLVYRTKDPKTAAL 60
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLE 128
IF SGK+VCTGAKS ED +K + + +G A + +QN+V S D+ + L
Sbjct: 61 IFRSGKIVCTGAKSIEDVDRGLKKVFKKMDSVGIKVADNPEITVQNIVASADLGSVLNLN 120
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + G + YEPE FPGL+YR+ +P++V+L+F SGK+V+T
Sbjct: 121 AIAIGLGLENIEYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVT 163
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ RI +P+ L+F SGK+V T
Sbjct: 104 VQNIVASADLGSVLNLNAIAIGLGLENIEYEPEQFPGLVYRIDQPKVVVLLFGSGKLVVT 163
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + R ++ L
Sbjct: 164 GGKKPKDAEEAVDRIVRELEGLAL 187
>gi|14423938|sp|P58177.1|TBP_PYROC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|13752554|gb|AAK38723.1|AF367981_1 TATA-binding protein [Pyrodictium occultum]
Length = 199
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++NIV+TV+L LDL I EYNP++F ++ R+ P+ TALIF SGKMV TG
Sbjct: 22 NIENIVATVSLDQTLDLNLIERSILTVEYNPEQFPGLVYRLDSPKVTALIFKSGKMVVTG 81
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS D A +K R ++K G +IQN+V S ++ + LE LT + S
Sbjct: 82 AKSTRDLIEAVKKIVRNLKKHGIQIYGRPKVQIQNIVASANLNVCVDLERAALTL-ENSM 140
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM +PR+VLLIF SGK+V+T
Sbjct: 141 YEPEQFPGLIHRMDEPRVVLLIFSSGKMVIT 171
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 53/81 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL++ AL N+ Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 113 QIQNIVASANLNVCVDLERAALTLENSMYEPEQFPGLIHRMDEPRVVLLIFSSGKMVITG 172
Query: 81 AKSEEDSRLAARKYARIIQKL 101
AK EE+ A K ++KL
Sbjct: 173 AKREEEVYEAVNKIYEKLKKL 193
>gi|374636062|ref|ZP_09707646.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
gi|373560320|gb|EHP86587.1| TATA-box binding family protein [Methanotorris formicicus Mc-S-70]
Length = 188
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 97/150 (64%), Gaps = 6/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL++ AL NAEY P++F ++ R+ EP+ LIF SGK+ CTGAKS
Sbjct: 16 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKVNCTGAKS 75
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+E++ +A +K + ++ G +D K+QNMV + D+ L+ + L + + Y
Sbjct: 76 KEEAEVAIKKIIKELKDAGM--DIIDDPEVKVQNMVATADLGIEPNLDDIALMI-EGTEY 132
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 133 EPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 162
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 104 KVQNMVATADLGIEPNLDDIALMIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 163
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K E D+ +A K ++++
Sbjct: 164 LKKEGDAEIALNKILETLREI 184
>gi|448581629|ref|ZP_21645410.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445733392|gb|ELZ84962.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 188
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R+P++ L
Sbjct: 1 MSHVNAVGSI-EIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A LG P + D +QN+V S D+ + L
Sbjct: 60 VFRSGKVVCTGADSVDDVGTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGKVV+T
Sbjct: 120 ALAIGLGLEDVEYEPEQFPGLVYRLDEPSVVVLMFGSGKVVIT 162
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G VP+ +QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP
Sbjct: 90 DLGVPVPEDADITVQNIVSSADLGAALNLNALAIGLGLEDVEYEPEQFPGLVYRLDEPSV 149
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TGAK D+ A + +++LG
Sbjct: 150 VVLMFGSGKVVITGAKRTTDAEAALKTVDEDVRELGL 186
>gi|156541942|ref|XP_001600485.1| PREDICTED: TATA box-binding protein-like protein 1 [Nasonia
vitripennis]
Length = 283
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 101/162 (62%), Gaps = 5/162 (3%)
Query: 13 VDMGGSVPQLQ----NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTA 68
+D P+L N+V + ++ C L+L++IAL+ N EY + V MR+R+P T A
Sbjct: 50 LDNAEEKPELDIIISNVVCSFSVRCHLNLREIALNGSNVEY-RRENGLVRMRLRKPCTLA 108
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE 128
I SSGK+ CTGA SEE+++ AAR+ AR +QKLGF +F +++I N++G+C + + I++
Sbjct: 109 SISSSGKVTCTGATSEEEAKKAARRCARSLQKLGFRVRFNNYRIVNVLGTCTMPWAIKIT 168
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE+ PG+IY++ + L IF +G + +T
Sbjct: 169 SFSTHYKDIVQYEPEIQPGVIYKLKNMKATLRIFSTGSITVT 210
>gi|448567600|ref|ZP_21637525.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445711598|gb|ELZ63388.1| transcription factor [Haloferax prahovense DSM 18310]
Length = 188
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R+P++ L
Sbjct: 1 MSHVNAVGSI-EIQNVVASTEVPVELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A LG P + D +QN+V S D+ + L
Sbjct: 60 VFRSGKIVCTGADSVDDVSTAIETLFDEFTDLGVPVPEDADITVQNIVSSADLGEALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G VP+ +QNIVS+ +LG L+L +A L EY P++F ++ R+ EP
Sbjct: 90 DLGVPVPEDADITVQNIVSSADLGEALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSV 149
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TGAK D+ A + +++LG
Sbjct: 150 VVLMFGSGKIVITGAKRTADAEAALKTVDEDVRELGL 186
>gi|375083218|ref|ZP_09730248.1| transcription factor [Thermococcus litoralis DSM 5473]
gi|374742172|gb|EHR78580.1| transcription factor [Thermococcus litoralis DSM 5473]
Length = 188
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 99/161 (61%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L LDL+K+ +++YNP+ F +I R EP+ L+FS
Sbjct: 2 VDMSNVELRIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS ED + A K ++ K+G KF + IQNMV S D+K L+
Sbjct: 62 SGKLVVTGAKSVEDIQAAVSKLVEMLSKIG--TKFTRAPEIDIQNMVFSGDLKMEFNLDA 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L YEPE FPG+IYR+ P+ V+L+F SGK+V +
Sbjct: 120 VALVLPN-CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCS 159
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + +L + +L +AL N EY P++F VI R+++P+ L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDLKMEFNLDAVALVLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A +K ++K G
Sbjct: 161 AKSEHDAWEAVKKLLHELEKYGL 183
>gi|328704605|ref|XP_003242546.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Acyrthosiphon pisum]
Length = 301
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 99/150 (66%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+ +L L+L+ +AL+ N EY + + M++R+P TA I+SSGK+ CTG+
Sbjct: 63 ISNVVTNFSLKSHLNLRYLALNGHNIEYR-RENGMLTMKLRKPNATATIWSSGKIACTGS 121
Query: 82 KSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
SE +++A+R++ARIIQKLG+ AKF ++I N++GSC + FPI++ + + Y
Sbjct: 122 TSESHAKIASRRFARIIQKLGYHNAKFSSYRIVNVLGSCSLPFPIKVIQFSEKYKTIAQY 181
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPEL PG+ +++ + + L IF +G + +T
Sbjct: 182 EPELHPGVTFKIKELKATLKIFSTGSITVT 211
>gi|261403691|ref|YP_003247915.1| transcription factor [Methanocaldococcus vulcanius M7]
gi|261370684|gb|ACX73433.1| TATA-box binding family protein [Methanocaldococcus vulcanius M7]
Length = 180
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+++AL NAEY P++F ++ R+ P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVALILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIEVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEP 127
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 156
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A K I+++
Sbjct: 157 LKSEEDAKRALNKILETIKEV 177
>gi|315231074|ref|YP_004071510.1| TATA-box binding protein [Thermococcus barophilus MP]
gi|315184102|gb|ADT84287.1| TATA-box binding protein [Thermococcus barophilus MP]
Length = 190
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 99/161 (61%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I R EP+ L+FS
Sbjct: 2 VDMSKVKLRIENIVASVDLFTQLDLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLVFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS ED A K +++ K+G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVSKLVQMLSKIG--TKFQRAPQIDIQNMVFSGDIGMEFNLDA 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 120 VALVLPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGMEFNLDAVALVLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDF 110
AKSE D+ A RK R ++K G + +F
Sbjct: 161 AKSEHDAWEAVRKLLRELEKYGLIEEEEEF 190
>gi|448466589|ref|ZP_21599175.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445813850|gb|EMA63824.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 186
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + D +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPDITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I+ LG
Sbjct: 161 GGKRTDDAEEAVEEIVERIEGLGL 184
>gi|126466212|ref|YP_001041321.1| transcription factor [Staphylothermus marinus F1]
gi|126015035|gb|ABN70413.1| TATA binding protein of transcription factor TFIID [Staphylothermus
marinus F1]
Length = 196
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L LDL I N Y P +F +I+R+ +P+TTALIF SGKMV TG
Sbjct: 16 KIENIVATVILDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTG 75
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS + A +K ++++K G K + +IQN+V S D+ I LE +
Sbjct: 76 AKSTQQLIDAVKKIIKLLRKYGI--KIVSKPRIQIQNIVASGDINAYINLERAAYLL-ED 132
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM +PR+VLLIF SGK+V+T
Sbjct: 133 SMYEPEQFPGLIHRMREPRVVLLIFSSGKMVIT 165
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ ++ ++L++ A ++ Y P++F +I R+REPR LIFSSGKMV TG
Sbjct: 107 QIQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIHRMREPRVVLLIFSSGKMVITG 166
Query: 81 AKSEEDSRLAARKYA 95
AK E + A R A
Sbjct: 167 AKEESEVETAVRNIA 181
>gi|448316921|ref|ZP_21506499.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445606151|gb|ELY60056.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+N+V++ + G + DL+ +A NA+Y+P F ++ R+ P++ LIF +GK+VCTGAK
Sbjct: 11 ENVVASGDTGREFDLQALADDLNNAQYDPNTFPGIVYRMDNPQSAGLIFHTGKIVCTGAK 70
Query: 83 SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLV--LTHGQFSSY 140
S ED +A +++LG + F IQN+V S D+ + L + L GQ Y
Sbjct: 71 SVEDINKSAETIFNALKQLGIAVEENPFTIQNIVSSADLGCSLNLNAVAIGLGLGQI-EY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ KP +V+L+F SGK V+T
Sbjct: 130 EPEQFPGLVYRLDKPDVVVLLFGSGKAVIT 159
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LGC L+L +A L EY P++F ++ R+ +P L+F SGK V T
Sbjct: 100 IQNIVSSADLGCSLNLNAVAIGLGLGQIEYEPEQFPGLVYRLDKPDVVVLLFGSGKAVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G +D+ A ++ +G
Sbjct: 160 GGTEIQDAATAVNVIISKLENVGL 183
>gi|348506447|ref|XP_003440770.1| PREDICTED: TATA box-binding protein-like protein 1-like
[Oreochromis niloticus]
Length = 187
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T C L+L+ IAL N Y P+ V+M++R+P TA I+SSGK++CTGA
Sbjct: 13 ITNVVATFRTRCHLNLRTIALEGTNVIYKPE-VGKVLMKLRKPMITASIWSSGKIICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE++++L AR+ AR +QKLGF +F FK+ N++ C + F + L + +SYE
Sbjct: 72 TSEDEAKLGARRLARCLQKLGFKVRFSAFKVVNVLAVCSMPFAVHLIDFTKNNRPIASYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
PEL P YR+ + + +F +G + +T
Sbjct: 132 PELHPAATYRIKNLKATIQVFSTGSLTVT 160
>gi|197305019|pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
gi|197305020|pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
gi|197305021|pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
gi|197305022|pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CTG
Sbjct: 14 KIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG 73
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + +
Sbjct: 74 AKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTE 132
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 133 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 163
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 105 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 164
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 165 LKSEEDAKRALKKILDTIKEV 185
>gi|310752315|gb|ADP09476.1| TATA-box binding protein [uncultured marine crenarchaeote E48-1C]
Length = 186
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 8/157 (5%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +++N+V++ L K+DL + EY P++F ++ R++ P+T LIF+SGKMV
Sbjct: 6 AVIKIENVVASATLNQKVDLNAVVKSYPIVEYRPEQFPGLVFRLKRPKTATLIFNSGKMV 65
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL----DFKIQNMVGSCDVKFPIRLEGLVLT 133
CTGAKSE+++R A +K +I++L + + KIQN+V S ++ I LE L+
Sbjct: 66 CTGAKSEKEARRAVKK---VIKELKKGGIIIIGKPELKIQNIVASANLGGMIDLEASTLS 122
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + YEPE FPGLIYRM +P++V+L+F SGK+V T
Sbjct: 123 LKK-TMYEPEQFPGLIYRMAEPKVVILLFASGKLVCT 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NLG +DL+ L + Y P++F +I R+ EP+ L+F+SGK+VCTG
Sbjct: 100 KIQNIVASANLGGMIDLEASTLSLKKTMYEPEQFPGLIYRMAEPKVVILLFASGKLVCTG 159
Query: 81 AKSEEDSRLAARK 93
AK E++ A K
Sbjct: 160 AKREQNVYDAVHK 172
>gi|336477906|ref|YP_004617047.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
gi|335931287|gb|AEH61828.1| TATA-box binding family protein [Methanosalsum zhilinae DSM 4017]
Length = 183
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M G +++N+V++ L DL KI + AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MTGYNIKIENVVASTKLAESFDLTKIEMEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTGAK+ ED + AR + +G + D +QN+V S D+ + L + +
Sbjct: 61 KVVCTGAKNVEDVHTVIKNMARKLNSIGVETVEDPDITVQNIVASADLHAILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE FPGL+YR+ +P++V+LIF SGK+V+T
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK+V T
Sbjct: 99 VQNIVASADLHAILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G KS ED + + + +G
Sbjct: 159 GGKSPEDCEMGVEVVRQQLDSMGL 182
>gi|408381757|ref|ZP_11179305.1| transcription factor [Methanobacterium formicicum DSM 3637]
gi|407815688|gb|EKF86258.1| transcription factor [Methanobacterium formicicum DSM 3637]
Length = 181
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 9/163 (5%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
MT V++ +++NIV++ LG +DL ++A EYN ++F ++ +++EP+T AL
Sbjct: 1 MTKVEI-----KVENIVASATLGKSVDLPQVAPALEGVEYNLEQFPGLVYKLKEPKTAAL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRL 127
IF SGK+VCTGAKS E+S+ A ++ L P +F + K+QN+V S ++ + L
Sbjct: 56 IFGSGKLVCTGAKSIENSKKAIHIAVDKMRTLDPDIPHEF-EIKVQNIVASANLDKTLNL 114
Query: 128 EGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E + L + + YEPE FPGL+YR+ P++VLL+F SGKVV T
Sbjct: 115 EAVALDL-ENTEYEPEQFPGLVYRLGDPKVVLLLFGSGKVVCT 156
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L+ +AL N EY P++F ++ R+ +P+ L+F SGK+VCTG
Sbjct: 98 KVQNIVASANLDKTLNLEAVALDLENTEYEPEQFPGLVYRLGDPKVVLLLFGSGKVVCTG 157
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AK+ D++L K + +L
Sbjct: 158 AKTISDAQLGVEKTKERLSELDL 180
>gi|389847604|ref|YP_006349843.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448617457|ref|ZP_21666044.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244910|gb|AFK19856.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445748377|gb|ELZ99824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +++ A+Y+P F ++ R +EP+ +LIF SGK+VCTG
Sbjct: 11 EIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQEPKAASLIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S +D A + + KLG P + + IQN+V S D+ + L L + G +
Sbjct: 71 ASSVDDVDRALEQVFGELSKLGIPTEDREEATIQNIVSSADLGTTLNLNALAIGLGLEDV 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRIDEPSVVVLMFGSGKIVIT 162
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ RI EP L+F SGK+V T
Sbjct: 103 IQNIVSSADLGTTLNLNALAIGLGLEDVEYEPEQFPGLVYRIDEPSVVVLMFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E +R A I LG
Sbjct: 163 GAKQVEHAREAINVVTDEIDSLGL 186
>gi|15668684|ref|NP_247483.1| transcription factor [Methanocaldococcus jannaschii DSM 2661]
gi|2833518|sp|Q57930.1|TBP_METJA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1591210|gb|AAB98497.1| transcription initiation factor IID, TATA-box binding protein
[Methanocaldococcus jannaschii DSM 2661]
Length = 183
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CTG
Sbjct: 9 KIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + +
Sbjct: 69 AKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTE 127
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 128 YEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 158
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 100 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 159
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 160 LKSEEDAKRALKKILDTIKEV 180
>gi|448608858|ref|ZP_21660137.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445747235|gb|ELZ98691.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 186
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A +++L P + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALGIIFDKLRELQIPVDDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM KP++V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDKPKVVILLFGSGKIVIT 160
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ +P+ L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDKPKVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I LG
Sbjct: 161 GGKQTDDAATAVEEIVERIDALGL 184
>gi|448540133|ref|ZP_21623370.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551731|ref|ZP_21629465.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448553994|ref|ZP_21630784.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445710007|gb|ELZ61830.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710121|gb|ELZ61943.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445719179|gb|ELZ70861.1| transcription factor [Haloferax sp. ATCC BAA-644]
Length = 188
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R P++ L
Sbjct: 1 MSQVNAIGSI-EIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A +LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKVVCTGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK D+ A +++LG
Sbjct: 163 GAKRVSDAETALETVDDDVRELGL 186
>gi|256810655|ref|YP_003128024.1| transcription factor [Methanocaldococcus fervens AG86]
gi|256793855|gb|ACV24524.1| TATA-box binding family protein [Methanocaldococcus fervens AG86]
Length = 180
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + + YEP
Sbjct: 69 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEP 127
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 128 EQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 156
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 157 LKSEEDAKRALKKILDTIREV 177
>gi|47224247|emb|CAG09093.1| unnamed protein product [Tetraodon nigroviridis]
Length = 185
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V+T GC L+L IA + N + P+R V M++R+PR TA I+SSGK++CTGA
Sbjct: 13 ISNVVATFRTGCHLNLYAIACNGHNVIHRPER-GTVTMQLRKPRVTANIWSSGKVICTGA 71
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE+++++ AR+ AR +QKL FP F FK+ N++ + + F I L + + YE
Sbjct: 72 TSEQEAKMGARRIARCVQKLNFPVSFSAFKVVNVMVTSAMPFKISLIDFTKRNRPVTRYE 131
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PEL P +Y M P+ + +F +G V +
Sbjct: 132 PELHPAAMYTMRHPKATVRVFATGSVTI 159
>gi|333910819|ref|YP_004484552.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
gi|333751408|gb|AEF96487.1| TATA-box-binding protein [Methanotorris igneus Kol 5]
Length = 181
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 97/150 (64%), Gaps = 6/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL++ AL NAEY P++F ++ R+ +P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTQIGSDIDLEEAALILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKVNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+E++ +A +K + ++ G +D K+QNMV + D+ L+ + L + + Y
Sbjct: 69 KEEAEVAIKKIIKELKDAGM--DIIDNPEVKVQNMVATADLGIEPNLDDIALMI-EGTEY 125
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 126 EPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 155
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 KVQNMVATADLGIEPNLDDIALMIEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 156
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K EED+ +A K ++++
Sbjct: 157 LKREEDAEIALNKILETLREI 177
>gi|156937779|ref|YP_001435575.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
gi|156566763|gb|ABU82168.1| TATA binding protein of transcription factor TFIID [Ignicoccus
hospitalis KIN4/I]
Length = 207
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 99/153 (64%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALH-ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+++NIV+TV++ +DL+KI N EY+P +F +I R+ EPR TALIF SGKMV T
Sbjct: 12 KIENIVATVSIDQNIDLEKIEKEFDSNVEYDPDQFPGLIFRLEEPRVTALIFKSGKMVVT 71
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
GAKS ++ A +K I++ G + + +IQN+V S ++ + LE +
Sbjct: 72 GAKSTQELITAVKKIFYILKSKGIVSGKVRPRIQIQNIVASANLGVEVHLEKAAYLL-EN 130
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLIYR+ +PR+VLL+F SGK+V+T
Sbjct: 131 SMYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVT 163
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NLG ++ L+K A N+ Y P++F +I R+ EPR L+FSSGKMV TG
Sbjct: 105 QIQNIVASANLGVEVHLEKAAYLLENSMYEPEQFPGLIYRLDEPRVVLLLFSSGKMVVTG 164
Query: 81 AKSEEDSRLAARKYARIIQKLG-FPAKFLDFKIQNMVGSCD 120
AK EE+ A K + +++ G +D ++ M+G +
Sbjct: 165 AKKEEEVSKAVEKVFQNLKEKGCIREPEVDLSVEEMLGEDE 205
>gi|448568567|ref|ZP_21638101.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445725917|gb|ELZ77535.1| transcription factor [Haloferax lucentense DSM 14919]
Length = 188
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R P++ L
Sbjct: 1 MSQVNAIGSI-EIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A +LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKVVCTGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK D+ A +++LG
Sbjct: 163 GAKRVGDAEAALETVDDDVRELGL 186
>gi|296109497|ref|YP_003616446.1| TATA-box binding family protein [methanocaldococcus infernus ME]
gi|295434311|gb|ADG13482.1| TATA-box binding family protein [Methanocaldococcus infernus ME]
Length = 187
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + + +DL+++AL NAEY P++F ++ R+ +P+ L+F SGK+ CTGAKS
Sbjct: 8 NVVVSTKIADSIDLEEVALVLENAEYEPEQFPGLVCRLNDPKVALLMFRSGKVNCTGAKS 67
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E++ A +K + ++ GF + + K+QNMV + D+ F L + + + + YEP
Sbjct: 68 KEEAERAIKKIIKELKDAGFDVNENPEIKVQNMVATADLGFEPDLNEIAIYVDE-TEYEP 126
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 127 EQFPGLVYRLNDPKVVVLIFGSGKVVIT 154
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 55/81 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + DL +IA++ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 96 KVQNMVATADLGFEPDLNEIAIYVDETEYEPEQFPGLVYRLNDPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A K I+++
Sbjct: 156 LKSEEDAKKALEKIKETIREI 176
>gi|292494314|ref|YP_003533457.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|448289408|ref|ZP_21480579.1| transcription factor [Haloferax volcanii DS2]
gi|291369097|gb|ADE01327.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|445582489|gb|ELY36830.1| transcription factor [Haloferax volcanii DS2]
Length = 188
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R P++ L
Sbjct: 1 MSQVNAIGSI-EIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A +LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKVVCTGADSVDDVSTAIETLFDEFTELGIPIPDDPDITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A +++LG
Sbjct: 163 GVKRVGDAETALETVDDDVRELGL 186
>gi|429216623|ref|YP_007174613.1| TATA-box binding protein [Caldisphaera lagunensis DSM 15908]
gi|429133152|gb|AFZ70164.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Caldisphaera lagunensis DSM 15908]
Length = 209
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +++NIV+TV L LDL I + +YNP +F ++ R++ P+ TALIF S
Sbjct: 23 EFGKPTVKIENIVATVILDTPLDLNLIETRIPDVDYNPDQFPGLVYRLQSPKITALIFKS 82
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVL 132
GKMV TGAKS + A + + + G P + +IQN+V S ++ + LE
Sbjct: 83 GKMVVTGAKSVKQLVWAVKTILKKLMIKGVPMQGKPQIQIQNIVASANLNVDVDLEKAAF 142
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
T + S YEPE FPGLIYRM KPR+VLLIF SGK+V+T
Sbjct: 143 TLPK-SMYEPEQFPGLIYRMEKPRVVLLIFSSGKMVIT 179
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL+K A + Y P++F +I R+ +PR LIFSSGKMV TG
Sbjct: 121 QIQNIVASANLNVDVDLEKAAFTLPKSMYEPEQFPGLIYRMEKPRVVLLIFSSGKMVITG 180
Query: 81 AKSEEDSRLAARKYARIIQ 99
AK E + + A I++
Sbjct: 181 AKRESEVQDAVNGIYNILK 199
>gi|389847270|ref|YP_006349509.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614785|ref|ZP_21663813.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388244576|gb|AFK19522.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445752872|gb|EMA04291.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 186
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A +++L P + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALEIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P++V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP+ L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I LG
Sbjct: 161 GGKRTDDAETAVEEIVERIDALGL 184
>gi|433425962|ref|ZP_20406798.1| transcription factor [Haloferax sp. BAB2207]
gi|448594544|ref|ZP_21652891.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|432197431|gb|ELK53812.1| transcription factor [Haloferax sp. BAB2207]
gi|445744180|gb|ELZ95659.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 188
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 100/163 (61%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R P++ L
Sbjct: 1 MSQVNAIGSI-EIQNVVASTEVPVELDLERLSLDMNGTDYDPENFPGLVYRTRNPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S +D A +LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKVVCTGADSVDDVSTAIETLFDEFTELGIPIPDDPDVTVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK D+ A +++LG
Sbjct: 163 GAKRVGDAEAALETVDDDVRELGL 186
>gi|297527104|ref|YP_003669128.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
gi|297256020|gb|ADI32229.1| TATA-box binding family protein [Staphylothermus hellenicus DSM
12710]
Length = 196
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV + LDL I N Y P +F +I+R+ +P+TTALIF SGKMV TG
Sbjct: 16 KIENIVATVIIDQSLDLNLIESRVPNVSYQPDQFPGLILRLEKPKTTALIFKSGKMVVTG 75
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS + A +K ++++K G K + +IQN+V S D+ I LE +
Sbjct: 76 AKSTQQLIDAVKKIIKLLRKYGI--KIVSKPRIQIQNIVASGDINAYINLERAAYLL-ED 132
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM +PR+VLLIF SGK+V+T
Sbjct: 133 SMYEPEQFPGLIHRMREPRVVLLIFSSGKMVIT 165
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ ++ ++L++ A ++ Y P++F +I R+REPR LIFSSGKMV TG
Sbjct: 107 QIQNIVASGDINAYINLERAAYLLEDSMYEPEQFPGLIHRMREPRVVLLIFSSGKMVITG 166
Query: 81 AKSEEDSRLAARKYA 95
AK E + +A R A
Sbjct: 167 AKEESEVEMAVRNIA 181
>gi|118431620|ref|NP_148219.2| transcription factor [Aeropyrum pernix K1]
gi|152031704|sp|Q9YAT1.3|TBP_AERPE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|116062944|dbj|BAA80867.2| TATA-box binding protein [Aeropyrum pernix K1]
Length = 203
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L +LDL I ++ +YNP +F ++ R+ PR T LIF SGKMV TG
Sbjct: 24 KIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIFKSGKMVITG 83
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS +K + G P +IQN+V S ++K I LE L + S
Sbjct: 84 AKSINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEKAALEF-ENSL 142
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM +PR+V+LIF SGK+V+T
Sbjct: 143 YEPEQFPGLIYRMDEPRVVMLIFSSGKMVIT 173
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL+K AL N+ Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 115 QIQNIVASANLKVYIDLEKAALEFENSLYEPEQFPGLIYRMDEPRVVMLIFSSGKMVITG 174
Query: 81 AKSEEDSRLAARKYAR 96
AK E + A +K AR
Sbjct: 175 AKMENEVYDAVKKVAR 190
>gi|333986797|ref|YP_004519404.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
gi|333824941|gb|AEG17603.1| TATA-box-binding protein [Methanobacterium sp. SWAN-1]
Length = 184
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ LG L+L K+A EYN ++F ++ +++EP+T ALIF SGK+VCTG
Sbjct: 10 KVENIVASATLGKSLELPKVAPALEGVEYNVEQFPGLVYKLKEPKTAALIFGSGKLVCTG 69
Query: 81 AKSEEDSRLAARKYARIIQKL--GFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
AKS E+S A ++ L P +F + KIQN+V S ++ + LE + + + +
Sbjct: 70 AKSIENSIKAIHIAVDKMRSLDPDIPHEF-EIKIQNIVASANLMSTLNLEAVAMDL-ENT 127
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 128 EYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCT 159
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ NL L+L+ +A+ N EY P++F ++ R+ EP+ L+F SGK+VCTG
Sbjct: 101 KIQNIVASANLMSTLNLEAVAMDLENTEYEPEQFPGLVYRLGEPKVVLLLFGSGKVVCTG 160
Query: 81 AKSEEDSRLAARKY-ARIIQ 99
AKS+ED++L K R+I+
Sbjct: 161 AKSKEDAQLGVEKTKERLIE 180
>gi|195143693|ref|XP_002012832.1| GL23716 [Drosophila persimilis]
gi|194101775|gb|EDW23818.1| GL23716 [Drosophila persimilis]
Length = 640
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V + N+GC+LDL IA N +Y+ R + M++R P TALI+SSG++ CTG
Sbjct: 241 IRNVVCSFNVGCQLDLSDIAQRGFNVKYHRSR--NLTMKLRRPAATALIWSSGRINCTGT 298
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR + KLGFP +F +F+I+ ++G+C + + I + H + + E
Sbjct: 299 TSEILAKVAARRFARCLWKLGFPTRFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQE 358
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PE+ + Y+M P+ L IF +G + +
Sbjct: 359 PEMHWCVTYKMQMPKATLKIFTTGSITV 386
>gi|448493598|ref|ZP_21609110.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445690153|gb|ELZ42373.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I+ LG
Sbjct: 161 GGKQTDDAEEAVEEIVERIEGLGL 184
>gi|383318805|ref|YP_005379646.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
gi|379320175|gb|AFC99127.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanocella conradii HZ254]
Length = 188
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G ++DLK + L A+Y+P++F ++ R ++P+T ALIF SGK+VCTGA
Sbjct: 13 IENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGA 72
Query: 82 KSEEDSRLAARKYARIIQKLGFPAK-FLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
KS ED +K + I +G + +QN+V S D+ + L + + G +
Sbjct: 73 KSIEDVDRGLKKVFKKIASVGIKVDPNPEITVQNIVASADLGSVLNLNAIAIGLGLENIE 132
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+V+T
Sbjct: 133 YEPEQFPGLVYRLDSPKVVVLLFGSGKLVVT 163
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ P+ L+F SGK+V T
Sbjct: 104 VQNIVASADLGSVLNLNAIAIGLGLENIEYEPEQFPGLVYRLDSPKVVVLLFGSGKLVVT 163
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + + ++ L
Sbjct: 164 GGKKPKDAEEAVERIVKELEGLAL 187
>gi|429193145|ref|YP_007178823.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448327012|ref|ZP_21516352.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429137363|gb|AFZ74374.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445609541|gb|ELY63341.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 185
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL +A+ EY+P+ F + RI +P+ L+F SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLGPVAMDLEGVEYDPELFPGAVYRIDDPKAALLLFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
KS +D R A ++ L P + +QN+V S D+ + L + + G + Y
Sbjct: 70 KSTDDMRRAVEIVFEKLRDLSIPVEPDGVTVQNIVSSADLGHHLNLNAIAIGLGLENIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P +VLL+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRIDDPDVVLLLFGSGKIVIT 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L N EY P++F ++ RI +P L+F SGK+V T
Sbjct: 100 VQNIVSSADLGHHLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPDVVLLLFGSGKIVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G + +D+ A + + +LG
Sbjct: 160 GGEQPDDAEQAVGQVRNRLGELGL 183
>gi|448498781|ref|ZP_21610993.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445698147|gb|ELZ50197.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A ++ I+ LG
Sbjct: 161 GGKRTDDAEEAVKEIVERIEGLGL 184
>gi|390961570|ref|YP_006425404.1| TATA-box binding protein [Thermococcus sp. CL1]
gi|390519878|gb|AFL95610.1| TATA-box binding protein [Thermococcus sp. CL1]
Length = 187
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 99/153 (64%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++V+L +L+L+K+ N++YNP+ F +I R EP+ LIFSSGK+V TG
Sbjct: 7 RIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIFSSGKLVVTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS ED A K ++++K+G AKF IQNMV S D+ L+ + L+
Sbjct: 67 AKSVEDIERAVNKLIQMLKKIG--AKFGRAPQIDIQNMVFSGDIGMEFNLDAVALSLPN- 123
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 124 CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 156
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 17 GSVPQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
G PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSG
Sbjct: 92 GRAPQIDIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSG 151
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGF 103
K+VC+GAKSE D+ A RK R ++K G
Sbjct: 152 KIVCSGAKSEHDAWEAVRKLLRELEKYGL 180
>gi|282162800|ref|YP_003355185.1| TATA-box-binding protein [Methanocella paludicola SANAE]
gi|282155114|dbj|BAI60202.1| TATA-box-binding protein [Methanocella paludicola SANAE]
Length = 188
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G ++DLK + L A+Y+P++F ++ R ++P+T ALIF SGK+VCTGA
Sbjct: 13 IENVVASTAIGQEIDLKSVTLALEGADYDPEQFPGLVYRTKDPKTAALIFRSGKIVCTGA 72
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
KS ED +K + + +G + + +QN+V S D+ + L + + G +
Sbjct: 73 KSIEDVDRGLKKVFKKMDSVGIKVDQNPEITVQNIVASADLGSVLNLNAIAIGLGLENIE 132
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+V+T
Sbjct: 133 YEPEQFPGLVYRLDHPKVVVLLFGSGKLVVT 163
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ P+ L+F SGK+V T
Sbjct: 104 VQNIVASADLGSVLNLNAIAIGLGLENIEYEPEQFPGLVYRLDHPKVVVLLFGSGKLVVT 163
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + + ++ L
Sbjct: 164 GGKKPKDAEEAVDRIVKELEGLAL 187
>gi|448604603|ref|ZP_21657770.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448624485|ref|ZP_21670433.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445744012|gb|ELZ95492.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445749690|gb|EMA01132.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A +++L P + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALGIIFDKLRELQIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P++V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP+ L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I LG
Sbjct: 161 GGKRTDDAETAVEEIVERIDALGL 184
>gi|448428387|ref|ZP_21584257.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|448429752|ref|ZP_21584617.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|448439730|ref|ZP_21588142.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|448453748|ref|ZP_21594091.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448454831|ref|ZP_21594311.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|448474251|ref|ZP_21602110.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|448485769|ref|ZP_21606914.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448511919|ref|ZP_21616298.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448519932|ref|ZP_21618139.1| transcription factor [Halorubrum distributum JCM 10118]
gi|448537266|ref|ZP_21622541.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445676556|gb|ELZ29076.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445689808|gb|ELZ42032.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445690882|gb|ELZ43085.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445694753|gb|ELZ46872.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445702110|gb|ELZ54073.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445703496|gb|ELZ55426.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445807548|gb|EMA57633.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445814514|gb|EMA64476.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445817468|gb|EMA67342.1| transcription factor [Halorubrum arcis JCM 13916]
gi|445817558|gb|EMA67427.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEDDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I+ LG
Sbjct: 161 GGKRTDDAEEAVEEIVERIEGLGL 184
>gi|222479944|ref|YP_002566181.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222452846|gb|ACM57111.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFEKLRGLQIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I+ LG
Sbjct: 161 GGKRTDDAEEAVEEIVERIEGLGL 184
>gi|448576280|ref|ZP_21642323.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448591579|ref|ZP_21651067.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445729960|gb|ELZ81554.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445733553|gb|ELZ85122.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A +++L P + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P++V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP+ L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I LG
Sbjct: 161 GGKRTDDAETAVEEIVERIDALGL 184
>gi|292655873|ref|YP_003535770.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433422047|ref|ZP_20405902.1| transcription factor [Haloferax sp. BAB2207]
gi|448289862|ref|ZP_21481024.1| transcription factor [Haloferax volcanii DS2]
gi|448539630|ref|ZP_21623096.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448555929|ref|ZP_21631787.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448562556|ref|ZP_21635514.1| transcription factor [Haloferax prahovense DSM 18310]
gi|448570482|ref|ZP_21639312.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448585086|ref|ZP_21647695.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|448595442|ref|ZP_21653145.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595861|sp|D4H071.1|TBP2_HALVD RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|291372685|gb|ADE04912.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432198733|gb|ELK54984.1| transcription factor [Haloferax sp. BAB2207]
gi|445581044|gb|ELY35408.1| transcription factor [Haloferax volcanii DS2]
gi|445710372|gb|ELZ62187.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445717214|gb|ELZ68934.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718874|gb|ELZ70558.1| transcription factor [Haloferax prahovense DSM 18310]
gi|445723129|gb|ELZ74776.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445727425|gb|ELZ79038.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445742896|gb|ELZ94386.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A +++L P + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALGIIFDKLRELKIPVDDEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P++V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP+ L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPKVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I LG
Sbjct: 161 GGKRTDDAETAVEEIVERIDALGL 184
>gi|110668436|ref|YP_658247.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385803899|ref|YP_005840299.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109626183|emb|CAJ52639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|339729391|emb|CCC40639.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R +EP+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQEPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSINDVHDALGIIFEKLRGLSIPVDEDPEITVQNIVSSADLGHTLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDQPEVVILLFGSGKIVIT 160
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTAL 69
PVD + +QNIVS+ +LG L+L +A L + EY P++F ++ R+ +P L
Sbjct: 92 PVDEDPEI-TVQNIVSSADLGHTLNLNALAIGLGLEDVEYEPEQFPGLVYRMDQPEVVIL 150
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+F SGK+V TG K D+ A + I+ LG
Sbjct: 151 LFGSGKIVITGGKQTNDAAAAVEEIVERIEDLGL 184
>gi|336121024|ref|YP_004575799.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
gi|334855545|gb|AEH06021.1| TATA-box-binding protein [Methanothermococcus okinawensis IH1]
Length = 181
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V + +G +DL+ A NAEY P++F ++ R+ EP+ LIF SGK+ CTG
Sbjct: 6 KIVNVVVSTKIGNDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTG 65
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS+E++ +A +K +++ GF + + K+QNMV + ++ L+ + G +
Sbjct: 66 AKSKEEAEIAIKKVIGYLKEAGFEIDENPEVKVQNMVATAELGIEPNLDDIATLEG--TE 123
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 124 YEPEQFPGLVYRLDNPKVVVLIFGSGKVVIT 154
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T LG + +L IA EY P++F ++ R+ P+ LIF SGK+V TG
Sbjct: 97 KVQNMVATAELGIEPNLDDIA-TLEGTEYEPEQFPGLVYRLDNPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K +ED+ +A K ++++
Sbjct: 156 LKHKEDAYIALEKILNTLKEM 176
>gi|389848878|ref|YP_006351115.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448614622|ref|ZP_21663769.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388246184|gb|AFK21128.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445753956|gb|EMA05371.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 188
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ ++ GSV ++QN+V++ + +LDL +++L +Y+P+ F ++ R P+ L
Sbjct: 1 MSNANVTGSV-EVQNVVASTEVTLELDLDRLSLDMSGTDYDPENFPGLVYRTENPKAACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S ED A + LG P + +QN+V S D+ + L
Sbjct: 60 VFRSGKIVCTGADSVEDVNTAIETLFDDLDDLGIPVPDDPNTTVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEDVEYEPEQFPGLVYRLDDPNVVVLMFGSGKIVIT 162
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G VP +QNIVS+ +LG L+L +A L + EY P++F ++ R+ +P
Sbjct: 90 DLGIPVPDDPNTTVQNIVSSADLGAALNLNALAIGLGLEDVEYEPEQFPGLVYRLDDPNV 149
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TGA++ D+ A +++LG
Sbjct: 150 VVLMFGSGKIVITGAEAVVDAESALETVDGDVRELGL 186
>gi|14423942|sp|Q9P9I9.1|TBP_METTL RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor;
AltName: Full=aTBP
gi|6723836|emb|CAB66385.1| archaeal transcription factor TBP [Methanothermococcus
thermolithotrophicus]
Length = 181
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ +P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A +K + ++ G +D +QNMV + D+ L+ + G + Y
Sbjct: 69 KEDAEIAIKKIIKELKDAGM--DIIDNPEVNVQNMVATADLGIEPNLDDISTLEG--TEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V+T +LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 NVQNMVATADLGIEPNLDDIS-TLEGTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K ++D+ LA K +++L
Sbjct: 156 LKKKDDAYLALDKILSTLKEL 176
>gi|448610180|ref|ZP_21661030.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445745539|gb|ELZ97006.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +++ A+Y+P F ++ R ++P+ +LIF SGK+VCTG
Sbjct: 12 EIQNVVASTAVGQELDLESLSMDLVGADYDPDNFPGLVYRTQDPKAASLIFRSGKIVCTG 71
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S +D A + + KLG P + IQN+V S D+ + L L + G +
Sbjct: 72 ASSVDDVDRALEQVFGELSKLGIPTDDREEATIQNIVSSADLGTTLNLNALAIGLGLEDV 131
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 132 EYEPEQFPGLVYRIEDPSVVVLMFGSGKIVIT 163
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ RI +P L+F SGK+V T
Sbjct: 104 IQNIVSSADLGTTLNLNALAIGLGLEDVEYEPEQFPGLVYRIEDPSVVVLMFGSGKIVIT 163
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E +R A I LG
Sbjct: 164 GAKQVEHAREAINVVTDEIDALGL 187
>gi|345004914|ref|YP_004807767.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344320540|gb|AEN05394.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALAEDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A + ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHDALAIIFQKLRDLTIPVEEEPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDDPDVVILLFGSGKIVIT 160
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ +P L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDDPDVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A K I+ LG
Sbjct: 161 GGKQVQDAQEAVEKIVERIEGLGL 184
>gi|222481286|ref|YP_002567522.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222454662|gb|ACM58925.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 186
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ + +LDL+ + AE+NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIDQELDLETLVDDIPGAEFNPDNFPGLVDRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S +D A +++LG P + +QN+V S D+ + + L L + G +
Sbjct: 69 AASVDDVHEALEIIFEKLRELGIPVTDSPEITVQNIVSSADLGYDLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMEDPGVVILLFGSGKIVIT 160
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ +P L+F SGK+V T
Sbjct: 101 VQNIVSSADLGYDLNLNALAIGLGLEDVEYEPEQFPGLVYRMEDPGVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A I LG
Sbjct: 161 GGKFAEDATAAVENIVEKIDDLGL 184
>gi|313124795|ref|YP_004035059.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286783|ref|ZP_21478002.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312291160|gb|ADQ65620.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445573322|gb|ELY27844.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 187
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + ++ L P D +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLNLVFDKLRALQIPVDDEPDITVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVIT 160
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A + + LG
Sbjct: 161 GGKHPSDAEGAVDEIVSRLSDLGL 184
>gi|339237017|ref|XP_003380063.1| TATA-box-binding protein [Trichinella spiralis]
gi|316977178|gb|EFV60321.1| TATA-box-binding protein [Trichinella spiralis]
Length = 315
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 105/171 (61%), Gaps = 8/171 (4%)
Query: 2 SPSTPGPPM-TPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
SP+T + P+D+ +++N+V+ N+ C LDL IA+H N Y R +I +
Sbjct: 92 SPTTTDDCLEDPIDL-----RIRNVVTMFNVCCHLDLHHIAMHTCNVIYERYR-GVLIFQ 145
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSC 119
I++PR ++SSGK+ +GA+SEE++R ++R ARI+QK+ P +F D+++ N++ +C
Sbjct: 146 IKKPRCYVKMWSSGKITVSGAQSEEEARKSSRSVARIVQKIVGPRVRFADYRVTNIMATC 205
Query: 120 DVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ F IR+ L + + SSYEPEL GL++R P+ L I +G + +T
Sbjct: 206 KLPFGIRIPNLATEYPRESSYEPELSIGLVWRSASPKATLRIHSTGSITIT 256
>gi|448414415|ref|ZP_21577484.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445681981|gb|ELZ34405.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 186
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + + I LG
Sbjct: 161 GGKQTDDAETAVVEIVKRIDNLGL 184
>gi|399574202|ref|ZP_10767962.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
gi|399240710|gb|EJN61634.1| tata binding protein of transcription factor tfiid [Halogranum
salarium B-1]
Length = 186
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R + P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQNPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALDIIFDKLRGLSIPVEEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + I+ LG
Sbjct: 161 GGKQTDDATTAVEQIVERIENLGL 184
>gi|313126218|ref|YP_004036488.1| tata binding protein of transcription factor tfiid [Halogeometricum
borinquense DSM 11551]
gi|448286060|ref|ZP_21477295.1| transcription factor [Halogeometricum borinquense DSM 11551]
gi|312292583|gb|ADQ67043.1| TATA binding protein of transcription factor TFIID [Halogeometricum
borinquense DSM 11551]
gi|445575111|gb|ELY29590.1| transcription factor [Halogeometricum borinquense DSM 11551]
Length = 186
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ +A A++NP F ++ R ++P+ ALIF SGK+VCTG
Sbjct: 9 EIQNVVASTGIGQELDLEALADDLPGADFNPDNFPGLVYRTQDPKAAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A ++ L P + + +QN+V S D+ + L L + G +
Sbjct: 69 AKSIDDVHEALGIIFDKLRGLSIPVDEDPEITVQNIVSSADLGHNLNLNALAIGLGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM +P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGHNLNLNALAIGLGLEDVEYEPEQFPGLVYRMDEPEVVILLFGSGKIVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A + + I LG
Sbjct: 161 GGKQTNDAETAVEEIVKRIDNLGL 184
>gi|19073311|gb|AAL84756.1|AF469636_1 TATA binding protein D [Halobacterium sp. GN101]
Length = 186
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ LG +L L+++A A+YNP+ F VI R+ +P +T LIF SGK VCTG
Sbjct: 9 HIENVVASSTLGAELALEQLAADLPGADYNPEEFPGVIYRLDDPPSTTLIFDSGKAVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A++ +D A +++LG A +QN+V S D+ P+ L + + G +
Sbjct: 69 AQTVDDVHEALSIVVEDLRELGIDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEAI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVIT 160
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 13 VDMGGSVP-QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTAL 69
+D+ P +QNIV + +L L+L IA L EY P++F ++ R+ +P L
Sbjct: 91 IDIAADPPVDVQNIVCSADLDQPLNLNAIAIGLGLEAIEYEPEQFPGLVYRLDDPDVVVL 150
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+F SGK+V TG +D+ +A + LG
Sbjct: 151 LFGSGKLVITGGSDPDDATVALEDVHDRLTDLGL 184
>gi|73668595|ref|YP_304610.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395757|gb|AAZ70030.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 184
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 96/154 (62%), Gaps = 7/154 (4%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ L DL+KI AEYN +F ++ R P+ LIF+SGK+VCTGA
Sbjct: 7 VENVVASTTLAEDFDLQKIEARLEKAEYNKAKFPGLVYRTENPKAAFLIFTSGKVVCTGA 66
Query: 82 KSEEDSRLAARKYARIIQKLGF----PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-Q 136
K+ +++++A A ++ +G P D IQN+V + D++ + L +V+ G +
Sbjct: 67 KTVDNAKMAIINLASTLKSIGCEKINPEP--DVHIQNIVATADLETNLNLNTIVIAFGME 124
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGL+YR+ PR+V+LIF SGK+V+T
Sbjct: 125 NVEYEPEVFPGLVYRLEDPRVVVLIFSSGKLVIT 158
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKI--ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QNIV+T +L L+L I A N EY P+ F ++ R+ +PR LIFSSGK+V
Sbjct: 98 HIQNIVATADLETNLNLNTIVIAFGMENVEYEPEVFPGLVYRLEDPRVVVLIFSSGKLVI 157
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG KS ED R + LG
Sbjct: 158 TGGKSPEDCEEGLRVIKKEFDNLGL 182
>gi|448621885|ref|ZP_21668634.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445754915|gb|EMA06309.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R+P++ L
Sbjct: 1 MSHVNAVGSI-EIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S D A LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKIVCTGANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G +P +QNIVS+ +LG L+L +A L EY P++F ++ R+ EP
Sbjct: 90 DLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSV 149
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TGAK D+ A +++LG
Sbjct: 150 VVLMFGSGKIVITGAKQVADAEAALETVDEDVRELGL 186
>gi|198450906|ref|XP_002137175.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
gi|198131246|gb|EDY67733.1| GA26713 [Drosophila pseudoobscura pseudoobscura]
Length = 642
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V + N+GC+LDL IA N +Y+ R + M++R P TALI+SSG++ CTG
Sbjct: 241 IRNVVCSFNVGCQLDLSDIAQRGFNVKYHKSR--NLTMKLRRPAATALIWSSGRINCTGT 298
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
SE +++AAR++AR + KLGFP F +F+I+ ++G+C + + I + H + + +
Sbjct: 299 TSEILAKVAARRFARCLWKLGFPTSFQNFRIETVLGTCRMPWDINIVNFSKKHPENAKQD 358
Query: 142 PELFPGLIYRMVKPRIVLLIFVSGKVVL 169
PE+ + Y+M P+ L IF +G + +
Sbjct: 359 PEMHWCVTYKMQMPKATLKIFTTGSITV 386
>gi|448603976|ref|ZP_21657400.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445744772|gb|ELZ96244.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 188
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ V+ GS+ ++QN+V++ + +LDL++++L +Y+P+ F ++ R R+P++ L
Sbjct: 1 MSHVNAVGSI-EIQNVVASTEVPLELDLERLSLDMDGTDYDPENFPGLVYRTRDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S D A LG P D +QN+V S D+ + L
Sbjct: 60 VFRSGKIVCTGANSVGDVSTAIETLFGEFADLGVPIPDEPDITVQNIVSSADLGAALNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 120 ALAIGLGLEAVEYEPEQFPGLVYRLDEPSVVVLMFGSGKIVIT 162
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 14 DMGGSVPQ-----LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G +P +QNIVS+ +LG L+L +A L EY P++F ++ R+ EP
Sbjct: 90 DLGVPIPDEPDITVQNIVSSADLGAALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPSV 149
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TGAK D+ A +++LG
Sbjct: 150 VVLMFGSGKIVITGAKRVADAEAALETVDEDVRELGL 186
>gi|167042151|gb|ABZ06885.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW93E5]
Length = 186
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ ++DL +I + EY+P +F ++ RI+ P+T LIFSSGKMVCTGA
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSE SR A + + ++K G K IQN+V S ++ I LE T + S Y
Sbjct: 70 KSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RMV P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKLVCT 158
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG ++ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVTIQNIVASINLGGRIHLEQAARTLPRSMYEPEQFPGLIHRMVDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKEPD 165
>gi|292654337|ref|YP_003534234.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|433428869|ref|ZP_20407252.1| transcription factor [Haloferax sp. BAB2207]
gi|448293881|ref|ZP_21483984.1| transcription factor [Haloferax volcanii DS2]
gi|448543937|ref|ZP_21625398.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|448551097|ref|ZP_21629239.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|448558528|ref|ZP_21633085.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|448573579|ref|ZP_21641062.1| transcription factor [Haloferax lucentense DSM 14919]
gi|448597726|ref|ZP_21654651.1| transcription factor [Haloferax alexandrinus JCM 10717]
gi|302595869|sp|D4GZA2.1|TBP1_HALVD RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|291371886|gb|ADE04113.1| TATA-binding transcription initiation factor [Haloferax volcanii
DS2]
gi|432195411|gb|ELK51946.1| transcription factor [Haloferax sp. BAB2207]
gi|445569802|gb|ELY24373.1| transcription factor [Haloferax volcanii DS2]
gi|445706079|gb|ELZ57966.1| transcription factor [Haloferax sp. ATCC BAA-646]
gi|445710653|gb|ELZ62451.1| transcription factor [Haloferax sp. ATCC BAA-645]
gi|445712280|gb|ELZ64062.1| transcription factor [Haloferax sp. ATCC BAA-644]
gi|445718485|gb|ELZ70175.1| transcription factor [Haloferax lucentense DSM 14919]
gi|445739187|gb|ELZ90696.1| transcription factor [Haloferax alexandrinus JCM 10717]
Length = 189
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + +++L P + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A + +LG
Sbjct: 161 GGKQPTDAEAAVDVIISRLSELGL 184
>gi|329764826|ref|ZP_08256418.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|340344477|ref|ZP_08667609.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|393796672|ref|ZP_10380036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
gi|329138693|gb|EGG42937.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|339519618|gb|EGP93341.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P +F ++ R++ P+T LIF+SGKMVCTG+
Sbjct: 10 VENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K G K +IQN+V S ++ I LE T + S Y
Sbjct: 70 KSEEMARKAVKTVVQKLRKGGIKVKKDATVEIQNIVASINLGGKIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCT 158
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV+++NLG K+ L++ A + Y P++F +I R+ +P+T L+FSSGK+VCTG
Sbjct: 100 EIQNIVASINLGGKIHLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFSSGKLVCTG 159
Query: 81 AKSEED 86
AK E D
Sbjct: 160 AKKEPD 165
>gi|167042577|gb|ABZ07300.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW133I6]
Length = 186
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ ++DL +I + EY+P +F ++ RI+ P+T LIFSSGKMVCTGA
Sbjct: 10 IENVVASASVDQRMDLNEITRKFADVEYHPDQFPGLVFRIKSPKTATLIFSSGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSE SR A + + ++K G K IQN+V S ++ I LE T + S Y
Sbjct: 70 KSETMSRKAVKLVVQQLRKGGIKIKKDAVVTIQNIVASINLGGRIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RMV P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMVDPKTVILLFSSGKLVCT 158
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG ++ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVTIQNIVASINLGGRIHLEQAARTLPRSMYEPEQFPGLIHRMVDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKEPD 165
>gi|448417264|ref|ZP_21579282.1| transcription factor [Halosarcina pallida JCM 14848]
gi|445678487|gb|ELZ30980.1| transcription factor [Halosarcina pallida JCM 14848]
Length = 187
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + ++ L P + + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLELVFEKLRALQIPVEDDPEITVQNIVTSADLGRDLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDSPDVVALLFGSGKLVIT 160
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDSPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A + + LG
Sbjct: 161 GGKQPSDAEKAVDEIVSRLSDLGL 184
>gi|448582755|ref|ZP_21646259.1| transcription factor [Haloferax gibbonsii ATCC 33959]
gi|445732403|gb|ELZ83986.1| transcription factor [Haloferax gibbonsii ATCC 33959]
Length = 189
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + +++L P + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A + +LG
Sbjct: 161 GGKKPEDAEAAVDVIISRLSELGL 184
>gi|448606630|ref|ZP_21659056.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|448622378|ref|ZP_21669072.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445738838|gb|ELZ90350.1| transcription factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445754460|gb|EMA05865.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 189
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + +++L P + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + +LG
Sbjct: 161 GGKQPKDAEAAVDVIISRLSELGL 184
>gi|118358642|ref|XP_001012562.1| TATA-box binding protein [Tetrahymena thermophila]
gi|89294329|gb|EAR92317.1| TATA-box binding protein [Tetrahymena thermophila SB210]
Length = 231
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 24/176 (13%)
Query: 18 SVPQLQNIVSTVNL----------GCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTT 67
P++QN+V+T+ + DL++IA RN +YNPKRF AV MRI++P+ T
Sbjct: 12 DTPKIQNVVATIKMIRQDGNSSKQKQTFDLQEIAQKCRNTQYNPKRFPAVFMRIKDPKAT 71
Query: 68 ALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK-LGFPAKFLDFKIQ--NMVGSCDVKFP 124
LI+SSG M G +S +S+ AA + II+K L +F + ++Q N+V SC + +P
Sbjct: 72 GLIYSSGNMTIVGTRSTNESQTAAERIFGIIKKQLNVDCRFENKEVQVRNIVASCKLGYP 131
Query: 125 IRLEGL--VLTHGQFSSYEPELFPGLIYRMV--------KPRIVLLIFVSGKVVLT 170
+ L+ + H QFS+Y+ + FPGLIYR + K I+ L+F SGK+V T
Sbjct: 132 VCLDKIHDDKDHKQFSTYD-DTFPGLIYRYMLNPGEQKKKNNIIALVFASGKMVFT 186
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYN--PKRFAAVIMRI--------REPRTTALI 70
Q++NIV++ LG + L KI + +++ F +I R ++ AL+
Sbjct: 118 QVRNIVASCKLGYPVCLDKIHDDKDHKQFSTYDDTFPGLIYRYMLNPGEQKKKNNIIALV 177
Query: 71 FSSGKMVCTGAKSEEDSRLAARK 93
F+SGKMV TGAKS+ED + A K
Sbjct: 178 FASGKMVFTGAKSQEDIQQAYDK 200
>gi|332159172|ref|YP_004424451.1| transcription factor [Pyrococcus sp. NA2]
gi|331034635|gb|AEC52447.1| transcription factor [Pyrococcus sp. NA2]
Length = 191
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDMSNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS +D A A++IQKL G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSIQDIEKAV---AKLIQKLKGIGVKFKRAPLIDIQNMVFSGDLGREFNLD 118
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +
Sbjct: 119 NVALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + +LG + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDLGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEADAWEAVRKLLRELEKYGL 183
>gi|110669284|ref|YP_659095.1| transcription factor [Haloquadratum walsbyi DSM 16790]
gi|385804848|ref|YP_005841248.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
gi|109627031|emb|CAJ53507.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
DSM 16790]
gi|148508283|gb|ABQ76067.1| TATA-binding transcription initiation factor [uncultured
haloarchaeon]
gi|339730340|emb|CCC41669.1| TATA-binding transcription initiation factor [Haloquadratum walsbyi
C23]
Length = 186
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R ++P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQKPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D R + ++ L P + D +QN+V S D+ + L + + G +
Sbjct: 69 AKSTTDVRESLHIVFDKLRDLRIPVSDNPDITVQNIVTSADLGEDLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDNPAVVALLFGSGKLVIT 160
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGEDLNLNAIAIGLGLENIEYEPEQFPGLVYRLDNPAVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+R A + +LG
Sbjct: 161 GGKEPDDAREAVDVILSRLDELGL 184
>gi|435850312|ref|YP_007311898.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
gi|433660942|gb|AGB48368.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanomethylovorans hollandica DSM 15978]
Length = 183
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L + DL KI AEYN ++F ++ R+ EP+ L+F+SGK+VCTG
Sbjct: 7 KIENVVASTKLADEFDLTKIEAEFEGAEYNKQKFPGLVYRVSEPKAAFLVFTSGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AK+ D A+ + ++G K + +QN+V S D+ + L + + G +
Sbjct: 67 AKNVADVHTVISNMAKKLNEIGIKTIKEPEITVQNIVASADLHAVLNLNAIAIGLGLENI 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ KP++V+LIF SGK+V+T
Sbjct: 127 EYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVT 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ RI +P+ LIFSSGK+V T
Sbjct: 99 VQNIVASADLHAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIDKPKVVVLIFSSGKLVVT 158
Query: 80 GAKSEED 86
G K+ E+
Sbjct: 159 GGKTPEN 165
>gi|57640067|ref|YP_182545.1| transcription factor [Thermococcus kodakarensis KOD1]
gi|2833446|sp|Q52366.1|TBP_PYRKO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|2129420|pir||JC4514 TATA-binding protein - Pyrococcus sp
gi|1405351|dbj|BAA08743.1| TATA binding protein [Pyrococcus sp.]
gi|57158391|dbj|BAD84321.1| transcription initiation factor TFIID [Thermococcus kodakarensis
KOD1]
Length = 190
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L L+L+K+ +++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDMSNVKLRIENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS +D + A K +++K+G AKF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVDDIKRAVYKLIEMLKKIG--AKFTREPQIDIQNMVFSGDIGMEFNLDA 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 120 VALILPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGMEFNLDAVALILPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE+D+ A +K R ++K G
Sbjct: 161 AKSEQDAWEAVKKLLRELEKYGL 183
>gi|2833470|sp|Q56253.1|TBP_THECE RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|498255|gb|AAA73412.1| TATA-binding protein [Thermococcus celer]
Length = 189
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 99/153 (64%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++V+L +L+L+++ +++YNP+ F +I R EP+ LIFSSGK+V TG
Sbjct: 7 RIENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGKLVVTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS ED A K ++++K+G AKF IQNMV S D+ L+ + L+
Sbjct: 67 AKSVEDIERAVNKLIQMLKKIG--AKFSRAPQIDIQNMVFSGDIGMEFNLDAVALSLPN- 123
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 124 CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 156
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 98 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 157
Query: 81 AKSEEDSRLAARKYARIIQK 100
AKSE D+ A RK R ++K
Sbjct: 158 AKSEHDAWEAVRKLLRELEK 177
>gi|14424468|sp|Q55031.2|TBP_SULSH RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++NIV+TV L LDL + N EY+P +F +I R+ +P+ TALIF SGKMV TG
Sbjct: 13 NIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS E+ A ++ + ++K G K + +IQN+V S ++ + L+ +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGI--KIMGKPKIQIQNIVASANLHVNVNLDKAAFLL-EN 129
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
MG Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSG
Sbjct: 98 MGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSG 157
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLG 102
KMV TGAK E++ A + RI KL
Sbjct: 158 KMVITGAKREDEVSKAVK---RIFDKLA 182
>gi|886020|gb|AAC43403.1| TATA-binding protein homolog; Method: conceptual translation
supplied by author, partial [Sulfolobus shibatae]
Length = 198
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++NIV+TV L LDL + N EY+P +F +I R+ +P+ TALIF SGKMV TG
Sbjct: 13 NIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS E+ A ++ + ++K G K + +IQN+V S ++ + L+ +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGI--KIMGKPKIQIQNIVASANLHVNVNLDKAAFLL-EN 129
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
MG Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSG
Sbjct: 98 MGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSG 157
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLG 102
KMV TGAK E++ A + RI KL
Sbjct: 158 KMVITGAKREDEVSKAVK---RIFDKLA 182
>gi|161528106|ref|YP_001581932.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407462144|ref|YP_006773461.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|160339407|gb|ABX12494.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|407045766|gb|AFS80519.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 186
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P +F ++ R++ P+T LIF+SGKMVCTG+
Sbjct: 10 VENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K G K +IQN+V S ++ I LE T + S Y
Sbjct: 70 KSEEMARKAVKTVVQKLRKGGIKVKKDAVVEIQNIVASINLGGKIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCT 158
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++QNIV+++NLG K+ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVEIQNIVASINLGGKIHLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKEPD 165
>gi|389852335|ref|YP_006354569.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
gi|388249641|gb|AFK22494.1| transcription factor (TATA-box-binding protein) [Pyrococcus sp.
ST04]
Length = 191
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDTSKVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL-GFPAKFL---DFKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS +D R A+++QKL G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVQD---IERAVAKLVQKLKGIGVKFRRAPQIDIQNMVFSGDIGREFNLD 118
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ LT YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 119 NVALTLPN-CEYEPEQFPGVIYRVREPRAVILLFSSGKIVCS 159
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R+REPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVREPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEADAWEAVRKLLRELEKYGL 183
>gi|118576418|ref|YP_876161.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118194939|gb|ABK77857.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P +F ++ R++ P+T LIF+SGKMVCTG+
Sbjct: 10 VENVVASASVDQKMDLNEITRTFPDVEYHPDQFPGLVFRLKSPKTATLIFTSGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLD-FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K G K +IQN+V S ++ I LE T + S Y
Sbjct: 70 KSEEMARKAVKTVVQKLRKGGIKVKKEAVVEIQNIVASINLGGKIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCT 158
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++QNIV+++NLG K+ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVEIQNIVASINLGGKIHLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKEPD 165
>gi|14590849|ref|NP_142921.1| transcription factor [Pyrococcus horikoshii OT3]
gi|6647870|sp|O58737.1|TBP_PYRHO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|3257423|dbj|BAA30106.1| 191aa long hypothetical TATA-binding protein (transcription
initiation factor TFIID) [Pyrococcus horikoshii OT3]
Length = 191
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 8/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDTSNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS +D R A++IQKL G KF +QNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSIQD---IERAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLD 118
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ LT YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 119 NVALTLPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DVQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEADAWEAVRKLLRELEKYGL 183
>gi|14423943|sp|Q9UWN7.1|TBP_SULAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|6578935|gb|AAF18138.1|AF205428_1 TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 10 AVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 69
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TGAKS ++ A ++ + ++K G +IQN+V S ++ + L+ +
Sbjct: 70 VTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-E 128
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM +PR+VLLIF SGK+V+T
Sbjct: 129 NNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 162
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 104 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 163
Query: 81 AKSEEDSRLAARK 93
AK E++ A +K
Sbjct: 164 AKREDEVHKAVKK 176
>gi|345006113|ref|YP_004808966.1| TATA-box-binding protein [halophilic archaeon DL31]
gi|344321739|gb|AEN06593.1| TATA-box-binding protein [halophilic archaeon DL31]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R EP++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGLELDLQSVAMDLEGADYDPEQFPGLVYRTEEPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
KS + + ++KL P + + +QN+V S D+ + L + + G +
Sbjct: 70 KSTDAVHESLGIVFDELRKLDIPVEDGPEITVQNIVSSADLGESLNLNAIAIGLGLENIE 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 YEPEQFPGLVYRLEEPDVVALLFGSGKLVIT 160
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTAL 69
PV+ G + +QNIVS+ +LG L+L IA L N EY P++F ++ R+ EP AL
Sbjct: 92 PVEDGPEI-TVQNIVSSADLGESLNLNAIAIGLGLENIEYEPEQFPGLVYRLEEPDVVAL 150
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+F SGK+V TG K+ D+ A + + LG
Sbjct: 151 LFGSGKLVITGGKTPADAEDAIDVISERLTDLGL 184
>gi|307352931|ref|YP_003893982.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156164|gb|ADN35544.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 186
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 100/153 (65%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + +LDL+ I ++AEYN KRF V++R++EP+ AL+F SGK+V TG
Sbjct: 10 KIENIVASAKVAKELDLQMINEKIKDAEYNKKRFPGVVLRMQEPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQ--KLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QF 137
AKS + ++ KL P K L++K+QN+V S D+ PI L + + +
Sbjct: 70 AKSIDSLSKGLDILGDKLRELKLDIP-KNLEYKVQNIVTSADLGTPINLNKIAVGFNLER 128
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V+L+F SGK+++T
Sbjct: 129 IEYEPEQFPGLVYRLDEPKVVVLLFGSGKLIIT 161
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ EP+ L+F SGK++
Sbjct: 101 KVQNIVTSADLGTPINLNKIAVGFNLERIEYEPEQFPGLVYRLDEPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A +K + LG
Sbjct: 161 TGGKQPEDAKKAVQKILSDLSNLGL 185
>gi|14423939|sp|P58178.1|TBP_SULSO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++NIV+TV L LDL + N EY+P +F +I R+ +P+ TALIF SGKMV TG
Sbjct: 13 NIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTG 72
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS E+ A ++ + ++K G K + +IQN+V S ++ + L+ +
Sbjct: 73 AKSTEELIKAVKRIIKTLKKYGI--KIVGKPKIQIQNIVASANLHVNVNLDKAAFLL-EN 129
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 130 NMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVIT 162
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSGKMV TG
Sbjct: 104 QIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITG 163
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK E++ A + RI KL
Sbjct: 164 AKREDEVSKAVK---RIFDKLA 182
>gi|150400624|ref|YP_001324390.1| transcription factor [Methanococcus aeolicus Nankai-3]
gi|166227819|sp|A6UTF6.1|TBP_META3 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150013327|gb|ABR55778.1| TATA-box binding protein [Methanococcus aeolicus Nankai-3]
Length = 181
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 95/150 (63%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ +A N+EY P++F ++ R+ +P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTKIGDDIDLEYVADVLDNSEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A K +++ G +D K+QNMV + ++ L+ L+ + + Y
Sbjct: 69 KEDAVIAINKVMEYLREAGL--DLIDTPEVKVQNMVATAELGMEPNLDD--LSTLERTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YRM P++VLL+F SGKVV+T
Sbjct: 125 EPEQFPGLVYRMESPKVVLLVFGSGKVVIT 154
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T LG + +L ++ R EY P++F ++ R+ P+ L+F SGK+V TG
Sbjct: 97 KVQNMVATAELGMEPNLDDLSTLER-TEYEPEQFPGLVYRMESPKVVLLVFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K++ED+ +A K +++L
Sbjct: 156 LKNKEDAYIALEKIKNTVKEL 176
>gi|448457842|ref|ZP_21595847.1| transcription factor [Halorubrum lipolyticum DSM 21995]
gi|445810143|gb|EMA60174.1| transcription factor [Halorubrum lipolyticum DSM 21995]
Length = 185
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++KL P + + +QN+V S D+ + L + + G + Y
Sbjct: 70 NSIEAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRIDEPDVVALLFGSGKLVVT 159
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ RI EP AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLVVT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPA 105
G S +D+ A + LG A
Sbjct: 160 GGTSPDDAAAAVDVIVEELDGLGLLA 185
>gi|38492428|pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|38492429|pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
gi|1419209|emb|CAA64405.1| box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 11 AVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 70
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TGAKS ++ A ++ + ++K G +IQN+V S ++ + L+ +
Sbjct: 71 VTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-E 129
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM +PR+VLLIF SGK+V+T
Sbjct: 130 NNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 163
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 105 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 164
Query: 81 AKSEEDSRLAARK 93
AK E++ A +K
Sbjct: 165 AKREDEVHKAVKK 177
>gi|448591939|ref|ZP_21651314.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445733228|gb|ELZ84803.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ D+ S+ ++QN+V++ + +LDLK ++L EYNP F ++ R +P++ L
Sbjct: 1 MSGTDVVESI-EIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S E A + LG P + +QN+V S D++ + L
Sbjct: 60 VFRSGKIVCTGADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGKVV+T
Sbjct: 120 ALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVIT 162
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +L L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK + A + +QKLG
Sbjct: 163 GAKEVAQAEEAIKVVRDEVQKLGL 186
>gi|448427036|ref|ZP_21583589.1| transcription factor [Halorubrum terrestre JCM 10247]
gi|445679083|gb|ELZ31564.1| transcription factor [Halorubrum terrestre JCM 10247]
Length = 186
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G + D+ A + LG
Sbjct: 161 GGTTPADAEAAVDVIVEELNGLGL 184
>gi|448576731|ref|ZP_21642607.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445728919|gb|ELZ80519.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ D+ S+ ++QN+V++ + +LDLK ++L EYNP F ++ R +P++ L
Sbjct: 1 MSGTDVVESI-EIQNVVASTGIEQELDLKSLSLDMAGTEYNPDNFPGLVYRTSDPKSACL 59
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
+F SGK+VCTGA S E A + LG P + +QN+V S D++ + L
Sbjct: 60 VFRSGKIVCTGADSVEGVHAALDILFEELSDLGIPLPDEPEITVQNIVSSADLRSNLNLN 119
Query: 129 GLVLTHG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
L + G + YEPE FPGL+YR+ +P +V+L+F SGKVV+T
Sbjct: 120 ALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVIT 162
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +L L+L +A L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLRSNLNLNALAIGLGLEDVEYEPEQFPGLVYRLEEPSVVVLMFGSGKVVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK + A +QKLG
Sbjct: 163 GAKEVAQAEQAIEVVRDEVQKLGL 186
>gi|448433649|ref|ZP_21585976.1| transcription factor [Halorubrum tebenquichense DSM 14210]
gi|445686241|gb|ELZ38577.1| transcription factor [Halorubrum tebenquichense DSM 14210]
Length = 186
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G S D+ A + LG
Sbjct: 161 GGTSPADAEAAVDVIVEELNGLGL 184
>gi|448451667|ref|ZP_21592967.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|448483665|ref|ZP_21605812.1| transcription factor [Halorubrum arcis JCM 13916]
gi|448514240|ref|ZP_21616992.1| transcription factor [Halorubrum distributum JCM 9100]
gi|448526080|ref|ZP_21619698.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445692908|gb|ELZ45077.1| transcription factor [Halorubrum distributum JCM 9100]
gi|445699280|gb|ELZ51311.1| transcription factor [Halorubrum distributum JCM 10118]
gi|445810523|gb|EMA60548.1| transcription factor [Halorubrum litoreum JCM 13561]
gi|445820680|gb|EMA70489.1| transcription factor [Halorubrum arcis JCM 13916]
Length = 186
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIEAVHESLDIVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G S ED+ A + LG
Sbjct: 161 GGTSPEDAAAAVDVIVEELNGLGL 184
>gi|374628586|ref|ZP_09700971.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906699|gb|EHQ34803.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 186
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 99/153 (64%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + +LDL+ I ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 10 KIENIVASAKVADELDLQMINEEIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQ--KLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QF 137
AKS ++ ++ KL P L++K+QN+V S D+ PI L + +
Sbjct: 70 AKSIDNLSRGLEILGEKLRALKLDIPTN-LEYKVQNIVTSADLGSPINLNKIAVGFNLDR 128
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V+L+F SGK+++T
Sbjct: 129 IEYEPEQFPGLVYRLEEPKVVVLLFGSGKLIIT 161
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ EP+ L+F SGK++
Sbjct: 101 KVQNIVTSADLGSPINLNKIAVGFNLDRIEYEPEQFPGLVYRLEEPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K +D++ A K + LG
Sbjct: 161 TGGKETKDAKAAVIKIMSDLSNLGL 185
>gi|448593777|ref|ZP_21652677.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445728641|gb|ELZ80242.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ ++ AE+NP F ++ R ++PR LIF SGK+VCTG
Sbjct: 11 EIQNVVASSAVGQELDLESLSDDVAGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S ++ A + + LG P + +QN+V S D+ + L L + G +
Sbjct: 71 ASSVDEVNRALEQVFEELGSLGIPTDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHV 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRIDDPNVVVLLFGSGKIVIT 162
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L + EY P++F ++ RI +P L+F SGK+V T
Sbjct: 103 VQNIVSSADLGTTLNLNALAIGLGLEHVEYEPEQFPGLVYRIDDPNVVVLLFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E +R A + I+ LG
Sbjct: 163 GAKKVEFAREAINVVSDEIESLGL 186
>gi|354609688|ref|ZP_09027644.1| TATA-box-binding protein [Halobacterium sp. DL1]
gi|353194508|gb|EHB60010.1| TATA-box-binding protein [Halobacterium sp. DL1]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NVENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLSIKVEDEPEIVVQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG +L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K +++LG
Sbjct: 161 GGKKPEDAEHAVDKIVSRLEELGL 184
>gi|452207285|ref|YP_007487407.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083385|emb|CCQ36676.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ ++G +L L+++A+ +EYNP F +I RI+EP LIF SGK+VCTG
Sbjct: 9 DIENVVASTDIGQELALERLAMDLSGSEYNPDTFPGLIYRIQEPEAANLIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A + +D + + ++ LG + +QN+V S D++ + L + + G +
Sbjct: 69 ANTVDDVHSSLQTVCETLRDLGIDVIEAPTITVQNIVFSADLRAQLNLNAIAIGFGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGKVV+T
Sbjct: 129 EYEPEQFPGLVYRLDTPDVVTLLFSSGKVVIT 160
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + +L +L+L IA+ + EY P++F ++ R+ P L+FSSGK+V T
Sbjct: 101 VQNIVFSADLRAQLNLNAIAIGFGLEDVEYEPEQFPGLVYRLDTPDVVTLLFSSGKVVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K+ + + A K + + +LG
Sbjct: 161 GTKTPDAAEEALEKISGKLSELGL 184
>gi|448536157|ref|ZP_21622402.1| transcription factor [Halorubrum hochstenium ATCC 700873]
gi|445702600|gb|ELZ54544.1| transcription factor [Halorubrum hochstenium ATCC 700873]
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTADPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIEAVHGSLDIVFEELRALQIPIEDPEITVQNIVTSADLGKSLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGKSLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPEVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G S D+ A + LG
Sbjct: 161 GGTSPADAEAAVDVIVEELNGLGL 184
>gi|242398131|ref|YP_002993555.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
gi|259517220|sp|C6A0R1.1|TBP_THESM RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|242264524|gb|ACS89206.1| Transcription factor TFIID [Thermococcus sibiricus MM 739]
Length = 185
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 6/153 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++V+L LDL+K+ +++YNP+ F +I R EP+ L+FSSGK+V TG
Sbjct: 7 RIENIVASVDLFASLDLEKVIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKLVVTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS +D + A K ++ K+G KF + IQNMV S D+K L+ + L
Sbjct: 67 AKSVDDIQAAVSKLVEMLSKIG--TKFGRAPEIDIQNMVFSGDLKMEFNLDAVALVLPN- 123
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPG+IYR+ P+ V+L+F SGK+V +
Sbjct: 124 CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCS 156
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 17 GSVPQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
G P++ QN+V + +L + +L +AL N EY P++F VI R+++P+ L+FSSG
Sbjct: 92 GRAPEIDIQNMVFSGDLKMEFNLDAVALVLPNCEYEPEQFPGVIYRVKDPKAVILLFSSG 151
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGF 103
K+VC+GAKSE D+ A +K + K G
Sbjct: 152 KIVCSGAKSEHDAWEAVKKLLHELDKYGL 180
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
++ +I+N+V S D+ + LE V+ S Y PE FPG+I R +P++ LL+F SGK+
Sbjct: 4 VELRIENIVASVDLFASLDLEK-VIEICPHSKYNPEEFPGIICRFDEPKVALLVFSSGKL 62
Query: 168 VLT 170
V+T
Sbjct: 63 VVT 65
>gi|448577353|ref|ZP_21642983.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445727998|gb|ELZ79607.1| transcription factor [Haloferax larsenii JCM 13917]
Length = 188
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ ++ AE+NP F ++ R ++PR LIF SGK+VCTG
Sbjct: 11 EIQNVVASSAVGLELDLESLSDDVPGAEFNPDNFPGLVYRTQDPRAANLIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S ++ A + + LG P + +QN+V S D+ + L L + G +
Sbjct: 71 ASSVDEVNQALEQVFEELGSLGIPIDGREEATVQNIVSSADLGTTLNLNALAIGLGLEHV 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRIDEPNVVVLLFGSGKIVIT 162
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 12 PVDMGGSVPQLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTAL 69
P+D G +QNIVS+ +LG L+L +A L + EY P++F ++ RI EP L
Sbjct: 94 PID-GREEATVQNIVSSADLGTTLNLNALAIGLGLEHVEYEPEQFPGLVYRIDEPNVVVL 152
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+F SGK+V TGAK E +R A + I+ LG
Sbjct: 153 LFGSGKIVITGAKKVEYAREAINVVSDEIESLGL 186
>gi|294496460|ref|YP_003542953.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
gi|292667459|gb|ADE37308.1| TATA binding protein of transcription factor TFIID
[Methanohalophilus mahii DSM 5219]
Length = 183
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L + DL KI AEYN ++F ++ R+ P+ L+F+SGK+VCTG
Sbjct: 7 KIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AK+ +D A+ + +G + D +QN+V S D+K + L + + G +
Sbjct: 67 AKNVDDVHTVIADMAKKLNGIGIDTLEKPDITVQNIVASADLKAVLNLNAIAIGLGLENI 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V+LIF SGK+V+T
Sbjct: 127 EYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK+V T
Sbjct: 99 VQNIVASADLKAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G KS E+ + + +G
Sbjct: 159 GGKSPENCEEGVEVVRQQLDNMGL 182
>gi|385805423|ref|YP_005841821.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
gi|383795286|gb|AFH42369.1| TATA-box-binding protein (TATA-box factor) [Fervidicoccus fontis
Kam940]
Length = 206
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V Q++NIV+TV L +LDL +I EYNP +F ++ R+ P+ TALIF SGKMV
Sbjct: 17 VVQIENIVATVTLDQQLDLHEIERKVPRVEYNPDQFPGLVFRLDRPKITALIFKSGKMVV 76
Query: 79 TGAKSEEDSRLAARK-----YARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
TG+KS ++ A ++ Y I+ G P +IQN+V S ++ + LE
Sbjct: 77 TGSKSTQELITAVKRIIKTFYNHGIKITGRPK----IQIQNIVASANLNVDVNLEDAAY- 131
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ + YEPE FPGLI+RM P +VLLIF SGK+V+T
Sbjct: 132 KLENNMYEPEQFPGLIHRMTDPYVVLLIFSSGKMVIT 168
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L+ A N Y P++F +I R+ +P LIFSSGKMV TG
Sbjct: 110 QIQNIVASANLNVDVNLEDAAYKLENNMYEPEQFPGLIHRMTDPYVVLLIFSSGKMVITG 169
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK EE+ A + +++L
Sbjct: 170 AKREEEVSKAVENIYKTLKELD 191
>gi|55377538|ref|YP_135388.1| transcription factor [Haloarcula marismortui ATCC 43049]
gi|344211616|ref|YP_004795936.1| transcription factor/TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|448630604|ref|ZP_21673184.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|448639975|ref|ZP_21677123.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|448659470|ref|ZP_21683325.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|448666852|ref|ZP_21685497.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|448678006|ref|ZP_21689196.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|448688547|ref|ZP_21694349.1| transcription factor [Haloarcula japonica DSM 6131]
gi|74571974|sp|Q5V470.1|TBP_HALMA RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|55230263|gb|AAV45682.1| TATA-box binding protein E [Haloarcula marismortui ATCC 43049]
gi|343782971|gb|AEM56948.1| transcription factor / TATA-box binding family protein [Haloarcula
hispanica ATCC 33960]
gi|445755637|gb|EMA07020.1| transcription factor [Haloarcula vallismortis ATCC 29715]
gi|445760411|gb|EMA11674.1| transcription factor [Haloarcula californiae ATCC 33799]
gi|445762502|gb|EMA13723.1| transcription factor [Haloarcula sinaiiensis ATCC 33800]
gi|445771983|gb|EMA23039.1| transcription factor [Haloarcula amylolytica JCM 13557]
gi|445773681|gb|EMA24714.1| transcription factor [Haloarcula argentinensis DSM 12282]
gi|445779213|gb|EMA30150.1| transcription factor [Haloarcula japonica DSM 6131]
Length = 186
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R ++P++ ALIF SGK+VCTG
Sbjct: 9 DIENVVASTGIGQELDLESVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVSSADLGSSLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPDVVALLFGSGKLVVT 160
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVSSADLGSSLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +ED+ A + LG
Sbjct: 161 GGKRKEDAEEAVDTIVERLSDLGL 184
>gi|399578906|ref|ZP_10772650.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
gi|399235932|gb|EJN56872.1| hypothetical protein HSB1_46890 [Halogranum salarium B-1]
Length = 189
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +++L+++A+ + A+YNP+ F ++ R+++P+ LIF SGK+VCTG
Sbjct: 9 HIENVVASTGIGTEIELEQLAMDLQGADYNPENFPGIVYRLQDPKAATLIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS E A ++ ++ LG + +QN+V S D+ + L + + G +
Sbjct: 69 AKSIEYVHAACQRVFDDLRTLGIDVDDDPEVIVQNIVASADLGDSLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRIDDPKVVALLFGSGKLVIT 160
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ RI +P+ AL+F SGK+V T
Sbjct: 101 VQNIVASADLGDSLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP 104
G K+ D++ A + +LG P
Sbjct: 161 GGKTPSDAKRAVTVIVERLTELGMP 185
>gi|13542225|ref|NP_111913.1| transcription factor [Thermoplasma volcanium GSS1]
gi|24638241|sp|Q978J5.1|TBP_THEVO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|14325659|dbj|BAB60562.1| TATA-binding protein [TBP] [Thermoplasma volcanium GSS1]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++NIV++ +L LDL +IAL +EY P++F +I R+++P+T LIF SGK+ CTGA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQDPKTAVLIFRSGKVNCTGA 68
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL----DFKIQNMVGSCDVKFPIRLEGLVLTHG-Q 136
K+ ED + R II KL + D +QN+V D++ + L + ++ G +
Sbjct: 69 KNIEDVK---RTIKIIIDKLKAANIEVYDDPDIIVQNIVAVYDLESELNLTDIAMSLGLE 125
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +PR+VLL+F SGKVV T
Sbjct: 126 NVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCT 159
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +L +L+L IA L N EY P++F ++ R+ EPR L+F SGK+VCT
Sbjct: 100 VQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E + A K + +QK+G
Sbjct: 160 GAKEESEIEQAVIKVKKELQKVGL 183
>gi|325188734|emb|CCA23265.1| TATAboxbinding protein putative [Albugo laibachii Nc14]
Length = 216
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKR-FAAVIMRIREPRTTALIFSSGK 75
G +L N++ + ++ LD+K +AL RNA+Y + F +I+R R PR + + + SGK
Sbjct: 23 GVTFRLVNLLGSGSIRGALDVKNLALMIRNADYAVRGGFNGMILRFRTPRASVIAYRSGK 82
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
+ GAKS + L +K+ I+QK G P + + FKI N +CD+KF +
Sbjct: 83 FIVIGAKSPAVADLVIQKFQDILQKSGAPHELVSFKIHNFCAACDLKFR-----KIAYKD 137
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPELFPGLIYRM+ P+ +L+F+SGK+V+T
Sbjct: 138 ASAQYEPELFPGLIYRMLVPKCTMLVFISGKIVIT 172
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 32 GCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLA 90
C L +KIA +A+Y P+ F +I R+ P+ T L+F SGK+V TG + ED A
Sbjct: 125 ACDLKFRKIAYKDASAQYEPELFPGLIYRMLVPKCTMLVFISGKIVITGFQKIEDGEQA 183
>gi|386875594|ref|ZP_10117754.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386806582|gb|EIJ66041.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P +F ++ R++ P+T LIF+SGKMVCTG+
Sbjct: 10 VENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K G K IQN+V S ++ I LE T + S Y
Sbjct: 70 KSEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCT 158
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG K+ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVTIQNIVASINLGGKIHLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKHEPD 165
>gi|16081349|ref|NP_393677.1| transcription factor [Thermoplasma acidophilum DSM 1728]
gi|14423941|sp|Q9HLM8.1|TBP_THEAC RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|10639343|emb|CAC11345.1| probable TATA-box binding protein (TFIID homolog) [Thermoplasma
acidophilum]
Length = 184
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 16/158 (10%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++NIV++ +L LDL +IAL +EY P++F +I R++EP+T LIF SGK+ CTGA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGA 68
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFK--------IQNMVGSCDVKFPIRLEGLVLT 133
K+ ED + R II KL K D + +QN+V D++ + L + ++
Sbjct: 69 KNIEDVK---RTIKIIIDKL----KAADIEVYDDPQIIVQNIVAVYDLESELNLTDIAMS 121
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE FPGL+YR+ +PR+VLL+F SGKVV T
Sbjct: 122 LGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCT 159
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV+ +L +L+L IA L N EY P++F ++ R+ EPR L+F SGK
Sbjct: 96 PQIIVQNIVAVYDLESELNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPRVVLLLFGSGK 155
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+VCTGAK E + A K + +QK+G
Sbjct: 156 VVCTGAKEESEIEQAVIKVKKELQKVGL 183
>gi|407464492|ref|YP_006775374.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407047680|gb|AFS82432.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P +F ++ R++ P+T LIF+SGKMVCTG+
Sbjct: 10 VENVVASADVMQKMDLNEITRTFPDVEYHPDQFPGLVFRLKTPKTATLIFTSGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K G K IQN+V S ++ I LE T + S Y
Sbjct: 70 KSEEMARKAVKTVVQKLRKGGIKVKKDAVVTIQNIVASINLGGKIHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFSSGKLVCT 158
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG K+ L++ A + Y P++F +I R+ +P+T L+FSSGK+V
Sbjct: 97 AVVTIQNIVASINLGGKIHLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFSSGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKQEPD 165
>gi|389845649|ref|YP_006347888.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|448616732|ref|ZP_21665442.1| transcription factor [Haloferax mediterranei ATCC 33500]
gi|388242955|gb|AFK17901.1| TATA-binding transcription initiation factor [Haloferax
mediterranei ATCC 33500]
gi|445751387|gb|EMA02824.1| transcription factor [Haloferax mediterranei ATCC 33500]
Length = 189
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + ++ L P + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLEIVFDKLRDLQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLA 90
G K +D+ A
Sbjct: 161 GGKKPQDAAAA 171
>gi|448406902|ref|ZP_21573334.1| transcription factor [Halosimplex carlsbadense 2-9-1]
gi|445676708|gb|ELZ29225.1| transcription factor [Halosimplex carlsbadense 2-9-1]
Length = 186
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K ++ LG
Sbjct: 161 GGKQPEDAEEAVDKIVSRLEDLGL 184
>gi|24638240|sp|Q971V3.2|TBP_SULTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
Length = 198
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 11 AVVNIENIVATVTLDQNLDLYAMERSVPNVEYDPDQFPGLIFRLEAPKVTSLIFKSGKMV 70
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TGAKS ++ A ++ + +++ G +IQN+V S ++ + L+ +
Sbjct: 71 VTGAKSTDELIKAVKRIIKTLKRYGMNLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-E 129
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM PR+VLLIF SGK+V+T
Sbjct: 130 NNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVIT 163
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSGKMV TG
Sbjct: 105 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMEDPRVVLLIFSSGKMVITG 164
Query: 81 AKSEEDSRLAARK 93
AK EE+ A +K
Sbjct: 165 AKREEEVHKAVKK 177
>gi|448441657|ref|ZP_21589264.1| transcription factor [Halorubrum saccharovorum DSM 1137]
gi|445688693|gb|ELZ40944.1| transcription factor [Halorubrum saccharovorum DSM 1137]
Length = 185
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S + + ++KL P + + +QN+V S D+ + L + + G + Y
Sbjct: 70 NSIDAVHESLDLVFDELRKLQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRIDDPDVVALLFGSGKLVIT 159
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ RI +P AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDDPDVVALLFGSGKLVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G + +D+ A + LG
Sbjct: 160 GGTTPDDAAAAVDVIVEELDGLGL 183
>gi|88601869|ref|YP_502047.1| transcription factor [Methanospirillum hungatei JF-1]
gi|88187331|gb|ABD40328.1| TATA binding protein of transcription factor TFIID
[Methanospirillum hungatei JF-1]
Length = 186
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +IA ++AEYN KRF V++R++ P+ AL+F SGK+V TG
Sbjct: 10 RIENIVASAKISESLDLPQIASSIKDAEYNKKRFPGVVIRMQNPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS E +++ L A L +KIQN+V S D+ I L + + +
Sbjct: 70 AKSVESLNKGLEILGDLLRSLNIEIASELTYKIQNIVTSADLGSGINLNKIAVGFNLERI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 130 EYEPEQFPGLVYRLEDPKVVVLLFGSGKLIIT 161
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ +P+ L+F SGK++
Sbjct: 101 KIQNIVTSADLGSGINLNKIAVGFNLERIEYEPEQFPGLVYRLEDPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A K ++ LG
Sbjct: 161 TGGKEPEDAKKAVLKIVDDLKGLGL 185
>gi|150400012|ref|YP_001323779.1| transcription factor [Methanococcus vannielii SB]
gi|166227822|sp|A6URP5.1|TBP_METVS RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150012715|gb|ABR55167.1| TATA-box binding [Methanococcus vannielii SB]
Length = 181
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 96/150 (64%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ +P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A +K + +++ G + +D +QNMV + ++ L+ ++ + + Y
Sbjct: 69 KEDAEIAIKKIIKELKEAGM--EIIDNPVVSVQNMVATTELGMEPNLDD--ISTLECTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V +QN+V+T LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V
Sbjct: 95 VVSVQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVI 153
Query: 79 TGAKSEEDSRLAARKYARIIQKL 101
TG K ED+ +A K + +++L
Sbjct: 154 TGLKVIEDAYIAFDKISATLKEL 176
>gi|15791061|ref|NP_280885.1| transcription factor [Halobacterium sp. NRC-1]
gi|169236811|ref|YP_001690011.1| transcription factor [Halobacterium salinarum R1]
gi|14423951|sp|Q9HN56.1|TBPE_HALSA RecName: Full=TATA-box-binding protein E; AltName: Full=Box
A-binding protein E; Short=BAP E; AltName: Full=TATA
sequence-binding protein E; Short=TBP E; AltName:
Full=TATA-box factor E
gi|10581658|gb|AAG20365.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|167727877|emb|CAP14665.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R ++P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG +L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRQLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A K +++LG
Sbjct: 161 GGKEPKDAEHAVDKITSRLEELGL 184
>gi|14521176|ref|NP_126651.1| transcription factor [Pyrococcus abyssi GE5]
gi|13124586|sp|Q9V024.1|TBP_PYRAB RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|5458394|emb|CAB49882.1| TATA box binding protein TFIIB-BBRE complex, chain A [Pyrococcus
abyssi GE5]
gi|380741746|tpe|CCE70380.1| TPA: transcription factor [Pyrococcus abyssi GE5]
Length = 191
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 98/162 (60%), Gaps = 8/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS D R A++I+KL G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLD 118
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +
Sbjct: 119 NVALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEADAWEAVRKLLRELEKYGL 183
>gi|337284406|ref|YP_004623880.1| transcription factor [Pyrococcus yayanosii CH1]
gi|334900340|gb|AEH24608.1| transcription factor [Pyrococcus yayanosii CH1]
Length = 191
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 6/161 (3%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDTSKVKLRIENIVASVDLFAQLDLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAK---FLDFKIQNMVGSCDVKFPIRLEG 129
SGK+V TGAKS ED A K ++++ +G K +D IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVGKLVQMLKGIGVSFKRAPLID--IQNMVFSGDIGREFNLDT 119
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR+ +PR V+L+F SGK+V +
Sbjct: 120 VALSLPN-CEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCS 159
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EPR L+FSSGK+VC+G
Sbjct: 101 DIQNMVFSGDIGREFNLDTVALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE D+ A RK R ++K G
Sbjct: 161 AKSEHDAWEAVRKLLRELEKYGL 183
>gi|448578919|ref|ZP_21644278.1| transcription factor [Haloferax larsenii JCM 13917]
gi|448589307|ref|ZP_21649466.1| transcription factor [Haloferax elongans ATCC BAA-1513]
gi|445724847|gb|ELZ76474.1| transcription factor [Haloferax larsenii JCM 13917]
gi|445735735|gb|ELZ87283.1| transcription factor [Haloferax elongans ATCC BAA-1513]
Length = 188
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + +++L P + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLGIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKF 107
G K ED+ A + LG F
Sbjct: 161 GGKKPEDAAAAVDVIISRLSDLGLLGSF 188
>gi|257386786|ref|YP_003176559.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
gi|257169093|gb|ACV46852.1| TATA-box binding family protein [Halomicrobium mukohataei DSM
12286]
Length = 186
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R ++P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHQSLRIVFDKLRDLNIQVDDDPEIVVQNIVTSADLGRTLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A K ++ LG
Sbjct: 161 GGKEPDDAKEAVDKIVSRLEDLGL 184
>gi|240102503|ref|YP_002958812.1| transcription factor [Thermococcus gammatolerans EJ3]
gi|239910057|gb|ACS32948.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 192
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 7/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD+ +++NIV++V+L +L+L+K+ N++YNP+ F +I R EP+ LIFS
Sbjct: 2 VDISNVKLRIENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFDEPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQ-KLGFPAKFL---DFKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS ED A +K +++ K+G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVKKLTEMLKTKVG--TKFTKPPQIDIQNMVFSGDIGMEFNLD 119
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR P+ V+L+F SGK+V +
Sbjct: 120 AVALSLPN-CEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCS 160
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R ++P+ L+FSSGK+VC+G
Sbjct: 102 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCSG 161
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE+D+ A +K R ++K G
Sbjct: 162 AKSEKDAWEAVKKLLRELEKYGL 184
>gi|198429838|ref|XP_002128047.1| PREDICTED: similar to TBP-like factor [Ciona intestinalis]
Length = 471
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+VS+ + C L+L++IAL + Y + V+MR+R P+ TA ++SSGK+VCTG+ S
Sbjct: 280 NVVSSFRVHCHLNLRQIALEGMDVVYR-RETQKVVMRMRNPKCTAYMWSSGKIVCTGSSS 338
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLV-LTHGQFSSYEP 142
+ +R +A+++AR + K+GF KF +F++ N++ C + + I + G+ SYEP
Sbjct: 339 AQYARQSAKRFARRLLKIGFKVKFAEFRVVNVLAVCKMPYAIDINEFAKANRGRHCSYEP 398
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLTVK 172
EL PG+ +R + L IF +G V +T +
Sbjct: 399 ELHPGVTFRESTTKATLKIFSTGSVTVTAR 428
>gi|452205985|ref|YP_007486107.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452082085|emb|CCQ35336.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A K +++LG
Sbjct: 161 GGKEPDDAKKAVDKIVSRLEELGL 184
>gi|76801184|ref|YP_326192.1| transcription factor [Natronomonas pharaonis DSM 2160]
gi|121696850|sp|Q3ITB1.1|TBP_NATPD RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|76557049|emb|CAI48623.1| TATA-binding transcription initiation factor [Natronomonas
pharaonis DSM 2160]
Length = 187
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+R A K +++LG
Sbjct: 161 GGKEPDDAREAVDKIVSRLEELGL 184
>gi|6573566|pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQK 100
C+GAKSE D+ A RK R + K
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDK 180
>gi|2392146|pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQK 100
C+GAKSE D+ A RK R + K
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDK 180
>gi|448488858|ref|ZP_21607457.1| transcription factor [Halorubrum californiensis DSM 19288]
gi|445695479|gb|ELZ47582.1| transcription factor [Halorubrum californiensis DSM 19288]
Length = 186
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S E + ++ L P + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIEAVHESLDIVFAELRALQIPIEDPKITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDDPEVVALLFGSGKVVVT 160
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDDPEVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G + +D+ A + LG
Sbjct: 161 GGTTPDDAAAAVDVIVEELNGLGL 184
>gi|18977667|ref|NP_579024.1| transcription factor [Pyrococcus furiosus DSM 3638]
gi|397651790|ref|YP_006492371.1| transcription factor [Pyrococcus furiosus COM1]
gi|48429154|sp|P62000.1|TBP_PYRFU RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48429155|sp|P62001.1|TBP_PYRWO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|1942573|pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
gi|1942574|pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
gi|498649|gb|AAA73447.1| TATA-binding protein [Pyrococcus woesei]
gi|1245168|gb|AAA93368.1| TATA-box binding protein [Pyrococcus furiosus]
gi|18893395|gb|AAL81419.1| transcription initiation factor TFIID (TATA-box factor) chain a
(TATA sequence-binding protein) (tbp) [Pyrococcus
furiosus DSM 3638]
gi|393189381|gb|AFN04079.1| transcription factor [Pyrococcus furiosus COM1]
Length = 191
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQKLG 102
C+GAKSE D+ A RK R + K G
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDKYG 182
>gi|448611222|ref|ZP_21661856.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445743654|gb|ELZ95135.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 189
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R ++P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
KS + + +++L P + +QN+V S D+ + L + + G +
Sbjct: 70 KSTDGVHESLEIVFDKLRELQIPVDDDPEITVQNIVTSADLGENLNLNAIAIGLGLEHIE 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 YEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGENLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPSVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A + LG
Sbjct: 161 GGKKPQDAEDAVDVIMSRLSDLGL 184
>gi|48477578|ref|YP_023284.1| transcription factor [Picrophilus torridus DSM 9790]
gi|56749679|sp|Q6L1R1.1|TBP_PICTO RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|48430226|gb|AAT43091.1| TATA-box binding protein [Picrophilus torridus DSM 9790]
Length = 184
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++NIV++ +L LDL KIAL +EY P++F +I R++EP+T LIF SGK+ CTGA
Sbjct: 9 IENIVASTSLAEHLDLSKIALALEGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNCTGA 68
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL----DFKIQNMVGSCDVKFPIRLEGLVLTHG-Q 136
K+ +D + + II KL + D +QN+V D++ + L + ++ G +
Sbjct: 69 KNLDDVK---KTIDIIIDKLKKADIEVYDNPDIIVQNIVAVYDLESNLNLTDIAMSLGLE 125
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 126 NVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCT 159
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +L L+L IA L N EY P++F ++ R+ EP+ L+F SGK+VCT
Sbjct: 100 VQNIVAVYDLESNLNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E + A K + +QK+G
Sbjct: 160 GAKEENEIEQAVIKVKKDLQKVGL 183
>gi|432331260|ref|YP_007249403.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
gi|432137969|gb|AGB02896.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Methanoregula formicicum SMSP]
Length = 186
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 10 KIENIVASAKVTDYLDLPALASRIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS + +++KL K L++KIQN+V S D+ I L + +
Sbjct: 70 AKSIDSLSKGLNILGNLLRKLDIDIPKKLNYKIQNIVTSADLATAINLNKIAVGFNLDRI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 130 EYEPEQFPGLVYRLDNPKVVVLLFGSGKLIIT 161
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +L ++L KIA+ + EY P++F ++ R+ P+ L+F SGK++
Sbjct: 101 KIQNIVTSADLATAINLNKIAVGFNLDRIEYEPEQFPGLVYRLDNPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A K ++ LG
Sbjct: 161 TGGKEPEDAKKAVVKILSDLRSLGL 185
>gi|302347997|ref|YP_003815635.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
gi|302328409|gb|ADL18604.1| TATA-box-binding protein [Acidilobus saccharovorans 345-15]
Length = 207
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 96/161 (59%), Gaps = 18/161 (11%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V ++NIV+TV L LDL I + +YNP +F ++ R++ P+ TAL+F SGKMV
Sbjct: 30 VVNIENIVATVILENTLDLNLIEARIPDVDYNPDQFPGLVYRLQSPKITALVFKSGKMVV 89
Query: 79 TGAKSEEDSRLAARKYAR-------IIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLE--G 129
TGAKS + A + + +IQ G P +IQN+V S ++ + LE
Sbjct: 90 TGAKSVKQLVWAVKAILKKFITKGIVIQ--GRP----QIQIQNIVASANLNVVVDLEKAA 143
Query: 130 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VL H S YEPE FPGLI+RM KPR+VLLIF SGK+V+T
Sbjct: 144 FVLPH---SMYEPEQFPGLIFRMDKPRVVLLIFSSGKMVIT 181
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL +DL+K A ++ Y P++F +I R+ +PR LIFSSGKMV TG
Sbjct: 123 QIQNIVASANLNVVVDLEKAAFVLPHSMYEPEQFPGLIFRMDKPRVVLLIFSSGKMVITG 182
Query: 81 AKSEEDSRLAARKYARIIQK 100
AK E + A +I+ +
Sbjct: 183 AKRENEVYEAVNNIYKILDE 202
>gi|257052326|ref|YP_003130159.1| transcription factor [Halorhabdus utahensis DSM 12940]
gi|256691089|gb|ACV11426.1| TATA-box binding family protein [Halorhabdus utahensis DSM 12940]
Length = 186
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFGKLRDLEIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A K +++LG
Sbjct: 161 GGKEPDDAKKAVDKIVSRLEELGL 184
>gi|223478548|ref|YP_002582873.1| TATA-box binding protein [Thermococcus sp. AM4]
gi|214033774|gb|EEB74600.1| TATA-box binding protein [Thermococcus sp. AM4]
Length = 192
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 7/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VD+ +++NIV++V+L +L+L+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDISNVKLRIENIVASVDLFAELNLEKVIEICPNSKYNPEEFPGIICRFEDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQ-KLGFPAKFL---DFKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS ED A +K +++ K+G KF IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVEDIERAVKKLTEMLKTKVG--TKFTRPPQIDIQNMVFSGDIGMEFNLD 119
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR P+ V+L+F SGK+V +
Sbjct: 120 AVALSLPN-CEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCS 160
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R ++P+ L+FSSGK+VC+G
Sbjct: 102 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRAKDPKAVILLFSSGKIVCSG 161
Query: 81 AKSEEDSRLAARKYARIIQKLGF 103
AKSE+D+ A +K R ++K G
Sbjct: 162 AKSEKDAWEAVKKLLRELEKYGL 184
>gi|448503146|ref|ZP_21612913.1| transcription factor [Halorubrum coriense DSM 10284]
gi|445693155|gb|ELZ45315.1| transcription factor [Halorubrum coriense DSM 10284]
Length = 186
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 11 VENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 70
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S + + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 71 NSIDAVYESLDIVFEELRALQIPIEDPEVTVQNIVTSADLGESLNLNAIAIGLGLEHIEY 130
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGKVV+T
Sbjct: 131 EPEQFPGLVYRLDEPDVVALLFGSGKVVVT 160
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPDVVALLFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G S ED+ A + LG
Sbjct: 161 GGTSPEDAAAAVDVIVEELDGLGL 184
>gi|45357820|ref|NP_987377.1| transcription factor [Methanococcus maripaludis S2]
gi|340623439|ref|YP_004741892.1| transcription factor [Methanococcus maripaludis X1]
gi|56749680|sp|Q6M0L3.1|TBP_METMP RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|45047380|emb|CAF29813.1| TATA-binding protein (TBP) [Methanococcus maripaludis S2]
gi|339903707|gb|AEK19149.1| transcription factor [Methanococcus maripaludis X1]
Length = 181
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 95/150 (63%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ EP+ LIF SGK+ CTGA+
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGARC 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A K + +++ G +D K+QNMV + ++ L+ ++ + + Y
Sbjct: 69 KEDAVIAINKIVKELKEAGM--DLIDNPEVKVQNMVATTELGMEPNLDD--ISTLECTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSEPKVVVLIFGSGKVVIT 154
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T LG + +L I+ EY P++F ++ R+ EP+ LIF SGK+V TG
Sbjct: 97 KVQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSEPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K ED+ +A K ++ +++L
Sbjct: 156 LKVIEDAYIAFDKISKTLKEL 176
>gi|448620717|ref|ZP_21667964.1| transcription factor [Haloferax denitrificans ATCC 35960]
gi|445756678|gb|EMA08044.1| transcription factor [Haloferax denitrificans ATCC 35960]
Length = 188
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +LDL+ ++ AE+NP F ++ R +EP+ LIF SGK+VCTG
Sbjct: 11 EIQNVVASSAIGQELDLESLSNDVTGAEFNPDNFPGLVYRTQEPKAANLIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S + A + + LG P + +QN+V S D+ + L L + G +
Sbjct: 71 ASSIDGVNRALDQVFEELGSLGIPIDNREEATVQNIVSSADLGTTLNLNALAIGLGLENV 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRIDEPNVVVLLFGSGKIVIT 162
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L +A L N EY P++F ++ RI EP L+F SGK+V T
Sbjct: 103 VQNIVSSADLGTTLNLNALAIGLGLENVEYEPEQFPGLVYRIDEPNVVVLLFGSGKIVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E +R A + + I LG
Sbjct: 163 GAKKVEFAREAIQVVSDEIDSLGL 186
>gi|397772369|ref|YP_006539915.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|448342237|ref|ZP_21531189.1| transcription factor [Natrinema gari JCM 14663]
gi|448346767|ref|ZP_21535649.1| transcription factor [Natrinema altunense JCM 12890]
gi|397681462|gb|AFO55839.1| TATA-box binding family protein [Natrinema sp. J7-2]
gi|445626228|gb|ELY79577.1| transcription factor [Natrinema gari JCM 14663]
gi|445632029|gb|ELY85252.1| transcription factor [Natrinema altunense JCM 12890]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A K ++ LG
Sbjct: 161 GGKKPVDAEHAVDKIVSRLEDLGL 184
>gi|433637530|ref|YP_007283290.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|448375336|ref|ZP_21558902.1| transcription factor [Halovivax asiaticus JCM 14624]
gi|433289334|gb|AGB15157.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Halovivax ruber XH-70]
gi|445658890|gb|ELZ11703.1| transcription factor [Halovivax asiaticus JCM 14624]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A K ++ LG
Sbjct: 161 GGKRPVDAEHAVDKIVSRLEDLGL 184
>gi|383619863|ref|ZP_09946269.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|435849205|ref|YP_007311455.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|448312598|ref|ZP_21502340.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|448315726|ref|ZP_21505366.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|448401315|ref|ZP_21571551.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|448696585|ref|ZP_21697997.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|448708683|ref|ZP_21701101.1| transcription factor [Halobiforma nitratireducens JCM 10879]
gi|433675473|gb|AGB39665.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronococcus occultus SP4]
gi|445601049|gb|ELY55043.1| transcription factor [Natronolimnobius innermongolicus JCM 12255]
gi|445610861|gb|ELY64628.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445666578|gb|ELZ19237.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445783213|gb|EMA34048.1| transcription factor [Halobiforma lacisalsi AJ5]
gi|445793090|gb|EMA43681.1| transcription factor [Halobiforma nitratireducens JCM 10879]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K ++ LG
Sbjct: 161 GGKKPEDAEHAVDKIVSRLEDLGL 184
>gi|284163428|ref|YP_003401707.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|448307952|ref|ZP_21497838.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|448320837|ref|ZP_21510322.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|448330303|ref|ZP_21519586.1| transcription factor [Natrinema versiforme JCM 10478]
gi|448351218|ref|ZP_21540027.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|448364173|ref|ZP_21552767.1| transcription factor [Natrialba asiatica DSM 12278]
gi|448367160|ref|ZP_21555008.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|448388559|ref|ZP_21565334.1| transcription factor [Haloterrigena salina JCM 13891]
gi|284013083|gb|ADB59034.1| TATA-box binding family protein [Haloterrigena turkmenica DSM 5511]
gi|445594922|gb|ELY49056.1| transcription factor [Natronorubrum bangense JCM 10635]
gi|445605264|gb|ELY59194.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445611982|gb|ELY65723.1| transcription factor [Natrinema versiforme JCM 10478]
gi|445634902|gb|ELY88076.1| transcription factor [Natrialba taiwanensis DSM 12281]
gi|445645061|gb|ELY98068.1| transcription factor [Natrialba asiatica DSM 12278]
gi|445653644|gb|ELZ06513.1| transcription factor [Natrialba aegyptia DSM 13077]
gi|445670314|gb|ELZ22917.1| transcription factor [Haloterrigena salina JCM 13891]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A K ++ LG
Sbjct: 161 GGKKPKDAEHAVDKIVSRLEDLGL 184
>gi|16120311|ref|NP_395899.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423950|sp|Q9HHE9.1|TBPF_HALSA RecName: Full=TATA-box-binding protein F; AltName: Full=Box
A-binding protein F; Short=BAP F; AltName: Full=TATA
sequence-binding protein F; Short=TBP F; AltName:
Full=TATA-box factor F
gi|10584455|gb|AAG21034.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +LG +L L ++A AEYNP+ F V+ R++EP++ LIF SGK+VCTG
Sbjct: 9 HIENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS + A +++LG K+QN+V S ++ + L + + G +
Sbjct: 69 AKSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVIT 160
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 13 VDMGGSVP-QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTAL 69
+D+ + P ++QNIVS+ +L L+L IA L EY P++F ++ R+ +P L
Sbjct: 91 IDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQIEYEPEQFPGLVYRLDDPDVVVL 150
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
+F SGK+V TGA D++ A + +LG
Sbjct: 151 LFGSGKLVITGAAESADAQHALAHVNDRLTELGL 184
>gi|305663395|ref|YP_003859683.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
gi|304377964|gb|ADM27803.1| TATA binding protein of transcription factor TFIID [Ignisphaera
aggregans DSM 17230]
Length = 218
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV++ +DL + N EY+P +F ++ R+ P+ TALIF SG+MV TG
Sbjct: 11 KIENIVATVSVDQTIDLDYLDKVLPNVEYDPDQFPGLVFRLESPKVTALIFRSGRMVVTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS D A ++ R + K P +IQN+V S ++ I LE + + +
Sbjct: 71 AKSTADLIKAVKRIVRTLLKYDIPITSKPRIQIQNIVASANLGSEIMLEKVAFLL-ENTM 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYRM P +VLL+F SGK+V+T
Sbjct: 130 YEPEQFPGLIYRMTDPHVVLLVFSSGKMVIT 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NLG ++ L+K+A N Y P++F +I R+ +P L+FSSGKMV TG
Sbjct: 102 QIQNIVASANLGSEIMLEKVAFLLENTMYEPEQFPGLIYRMTDPHVVLLVFSSGKMVITG 161
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AKSEE+ A R +++LG
Sbjct: 162 AKSEEEVFQAVRNLYLKLKELG 183
>gi|399576129|ref|ZP_10769886.1| transcription factor [Halogranum salarium B-1]
gi|399238840|gb|EJN59767.1| transcription factor [Halogranum salarium B-1]
Length = 186
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + +++L + + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLNIVFDKLRELKIQVEDDPEITVQNIVTSADLGKNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPKVVALLFGSGKLVIT 160
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP+ AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGKNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED++ A + +LG
Sbjct: 161 GGKKPEDAKHAVEVITERLSELGL 184
>gi|320100857|ref|YP_004176449.1| TATA-binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
gi|319753209|gb|ADV64967.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
mucosus DSM 2162]
Length = 193
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L LDL+ I + Y P +F +I R+ +PR TAL+F SGKMV TG
Sbjct: 12 RVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTG 71
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
KS + A +K ++ K G + +IQN+V D+ + LE H + S
Sbjct: 72 TKSTQQLVEAVKKIIKVFMKSGVDVRGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSM 130
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 131 YEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 161
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV+ ++ ++L+K A H ++ Y P++F +I R+R+PR LIFSSGKMV TG
Sbjct: 103 QIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVITG 162
Query: 81 AKSEEDSRLAARKYAR 96
AK E + A AR
Sbjct: 163 AKEESEVERAVVNIAR 178
>gi|150403180|ref|YP_001330474.1| transcription factor [Methanococcus maripaludis C7]
gi|166227820|sp|A6VIP7.1|TBP_METM7 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|150034210|gb|ABR66323.1| TATA-box binding [Methanococcus maripaludis C7]
Length = 181
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 94/150 (62%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ +P+ LIF SGK+ CTGAKS
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKS 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
++D+ +A K + +Q+ G +D +QNMV + ++ L+ ++ + + Y
Sbjct: 69 KDDAVIAINKIIKELQEAGM--DIIDNPEVNVQNMVATTELGMEPNLDD--ISTLECTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V+T LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 NVQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K +D+ +A K +++L
Sbjct: 156 LKRIDDAYVAFNKILTTLKEL 176
>gi|448462784|ref|ZP_21597843.1| transcription factor [Halorubrum kocurii JCM 14978]
gi|445818005|gb|EMA67873.1| transcription factor [Halorubrum kocurii JCM 14978]
Length = 185
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S + + ++ L P + + +QN+V S D+ + L + + G + Y
Sbjct: 70 NSIDAVHESLALVFDELRALQIPIEDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRIDEPDVVALLFGSGKLVVT 159
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ RI EP AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLVVT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPA 105
G S +D+ A + LG A
Sbjct: 160 GGTSPDDAAAAVDVIVEELDGLGLLA 185
>gi|448610758|ref|ZP_21661425.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
gi|445744442|gb|ELZ95920.1| transcription factor [Haloferax mucosum ATCC BAA-1512]
Length = 188
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ + +LDL +++L + +Y+P+ F ++ R +P+ L+F SGK+VCTG
Sbjct: 11 EVQNVVASTEVSFELDLDRLSLDMSSTDYDPENFPGLVYRTHDPKAACLVFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S D A + LG P IQN+V S D+ + L L + G +
Sbjct: 71 ADSVTDVNAAIETLFDELDSLGVPVPDDPSPTIQNIVSSADLGGALNLNALAIGLGLEAV 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V+L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRLDEPNVVILMFGSGKIVIT 162
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
P +QNIVS+ +LG L+L +A L EY P++F ++ R+ EP L+F SGK+V
Sbjct: 101 PTIQNIVSSADLGGALNLNALAIGLGLEAVEYEPEQFPGLVYRLDEPNVVILMFGSGKIV 160
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGF 103
TGA++ D+ A +++LG
Sbjct: 161 ITGAEAVADAESALEVVDSDVRELGL 186
>gi|289581532|ref|YP_003479998.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|336252658|ref|YP_004595765.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433589465|ref|YP_007278961.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448283054|ref|ZP_21474333.1| transcription factor [Natrialba magadii ATCC 43099]
gi|448354487|ref|ZP_21543243.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|448357153|ref|ZP_21545859.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|448381388|ref|ZP_21561591.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
gi|289531085|gb|ADD05436.1| TATA-box binding family protein [Natrialba magadii ATCC 43099]
gi|335336647|gb|AEH35886.1| TATA-box binding family protein [Halopiger xanaduensis SH-6]
gi|433304245|gb|AGB30057.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445574762|gb|ELY29250.1| transcription factor [Natrialba magadii ATCC 43099]
gi|445637375|gb|ELY90525.1| transcription factor [Natrialba hulunbeirensis JCM 10989]
gi|445649961|gb|ELZ02892.1| transcription factor [Natrialba chahannaoensis JCM 10990]
gi|445663196|gb|ELZ15950.1| transcription factor [Haloterrigena thermotolerans DSM 11522]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K ++ LG
Sbjct: 161 GGKKPEDAEHAVDKIVSRLEDLGL 184
>gi|170291079|ref|YP_001737895.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175159|gb|ACB08212.1| TATA-box binding family protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 211
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QN+VS+ ++ +LDL +I+ + + Y+P++F ++++I EP+ L+FSSGK VCTG
Sbjct: 35 IQNVVSSADIRQRLDLHEISRRIKKSRYDPEKFPGLVLKIDEPKAALLLFSSGKFVCTGT 94
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDF-KIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KS E+S A ++QK G K K +N+V S + + +E L L + + Y
Sbjct: 95 KSVEESAKAINAAIEVLQKHGIEVKGRPLIKAENIVASAKLHVKVDIERLAL-ELENTLY 153
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM P +V LIF SG +V T
Sbjct: 154 EPEQFPGLIFRMKDPDVVFLIFASGSLVCT 183
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 23 QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+NIV++ L K+D++++AL N Y P++F +I R+++P LIF+SG +VCTGAK
Sbjct: 127 ENIVASAKLHVKVDIERLALELENTLYEPEQFPGLIFRMKDPDVVFLIFASGSLVCTGAK 186
Query: 83 SEEDSRLAARKYARIIQKLGF 103
E D R A K I+ + G+
Sbjct: 187 KESDVRRAVYKLRDILARKGY 207
>gi|432328919|ref|YP_007247063.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
gi|432135628|gb|AGB04897.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Aciduliprofundum sp. MAR08-339]
Length = 181
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q++NIV++ +L KLDL KIAL AEY P++F +I R+ EP+T LIF SGK+ CTG
Sbjct: 5 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 64
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKI--QNMVGSCDVKFPIRLEGLVLTHG-QF 137
AK E + ++ G + + KI QN+V D+ + L + ++ G +
Sbjct: 65 AKDIEKVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 123
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 124 VEYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCT 156
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +LG +L+L IA L N EY P++F ++ RI EP+ L+F SGK+VCT
Sbjct: 97 VQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIEEPKVVLLLFGSGKVVCT 156
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK +E+ A +K + ++ +G
Sbjct: 157 GAKKKEEIVEAIKKLKKELESVGL 180
>gi|448303994|ref|ZP_21493939.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
gi|445592081|gb|ELY46273.1| transcription factor [Natronorubrum sulfidifaciens JCM 14089]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+ A K ++ LG
Sbjct: 161 GGKKPKDAEHAVDKIVSRLEDLGL 184
>gi|429191762|ref|YP_007177440.1| TATA-box binding protein [Natronobacterium gregoryi SP2]
gi|448325091|ref|ZP_21514490.1| transcription factor [Natronobacterium gregoryi SP2]
gi|429135980|gb|AFZ72991.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natronobacterium gregoryi SP2]
gi|445616448|gb|ELY70074.1| transcription factor [Natronobacterium gregoryi SP2]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K ++ LG
Sbjct: 161 GGKKPEDAEHAVDKIVTRLEDLGL 184
>gi|448302231|ref|ZP_21492214.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581890|gb|ELY36238.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A K ++ LG
Sbjct: 161 GGKKPVDAEHAVDKIVSRLEDLGL 184
>gi|448730264|ref|ZP_21712572.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|448735254|ref|ZP_21717470.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445793432|gb|EMA44004.1| transcription factor [Halococcus saccharolyticus DSM 5350]
gi|445798592|gb|EMA48989.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 189
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 11 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D + ++ L + + +QN+V S D++ + L + + G +
Sbjct: 71 AKSTADVHESLEIVFDKLRDLEIRVEDDPEIVVQNIVTSADLQKTLNLNAIAIGLGLENI 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 103 VQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Query: 80 GAKSEEDSRLAARK 93
G K D+ A K
Sbjct: 163 GGKEPADAEHAVDK 176
>gi|335441192|ref|ZP_08561913.1| transcription factor [Halorhabdus tiamatea SARL4B]
gi|334888363|gb|EGM26662.1| transcription factor [Halorhabdus tiamatea SARL4B]
Length = 186
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + + ++ L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLQIVFGKLRDLNIQVDEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPDVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A K +++LG
Sbjct: 161 GGKEPDDAKKAVDKIVSRLEELGL 184
>gi|126179334|ref|YP_001047299.1| transcription factor [Methanoculleus marisnigri JR1]
gi|125862128|gb|ABN57317.1| TATA binding protein of transcription factor TFIID [Methanoculleus
marisnigri JR1]
Length = 187
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 16/159 (10%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 11 KIENIVASAKVTDSLDLPSLASRLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD--------FKIQNMVGSCDVKFPIRLEGLVL 132
AKS ++ +R +Q L + LD +KIQN+V S D+ PI L + +
Sbjct: 71 AKSIDN-------LSRGLQILADQLRALDIDIPENPEYKIQNIVTSADLGTPINLNKIAV 123
Query: 133 THG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 124 GFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIIT 162
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ +P+ L+F SGK++
Sbjct: 102 KIQNIVTSADLGTPINLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLII 161
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A ++ + LG
Sbjct: 162 TGGKVPEDAQRAVKRILSELSSLGL 186
>gi|222481033|ref|YP_002567270.1| transcription factor [Halorubrum lacusprofundi ATCC 49239]
gi|222453935|gb|ACM58200.1| TATA-box binding family protein [Halorubrum lacusprofundi ATCC
49239]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S + + ++ L P + +QN+V S D+ + L + + G + Y
Sbjct: 70 NSIDAVHESLAIVFDELRGLQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRIDEPDVVALLFGSGKLVIT 159
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ RI EP AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRIDEPDVVALLFGSGKLVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPA 105
G S +D+ A + LG A
Sbjct: 160 GGTSPDDAAAAVDVIVEKLDGLGLLA 185
>gi|448727075|ref|ZP_21709452.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|448737752|ref|ZP_21719787.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445792275|gb|EMA42886.1| transcription factor [Halococcus morrhuae DSM 1307]
gi|445803308|gb|EMA53606.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 189
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +EP++ ALIF SGK+VCTG
Sbjct: 11 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQEPKSAALIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D + ++ L + + +QN+V S D++ + L + + G +
Sbjct: 71 AKSTADVHESLEIVFDKLRDLEIRVEEDPEIVVQNIVTSADLQKTLNLNAIAIGLGLENI 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 103 VQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A K + +LG
Sbjct: 163 GGKEPADAEHAVDKITDRLDELGL 186
>gi|448475876|ref|ZP_21603231.1| transcription factor [Halorubrum aidingense JCM 13560]
gi|445816094|gb|EMA66003.1| transcription factor [Halorubrum aidingense JCM 13560]
Length = 185
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R +P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTTDPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSSY 140
S + + ++ L P + +QN+V S D+ + L + + G + Y
Sbjct: 70 SSIDAVHESLAIVFDELRALQIPIDDPEITVQNIVTSADLGESLNLNAIAIGLGLEHIEY 129
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 EPEQFPGLVYRLDEPDVVALLFGSGKLVVT 159
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L + EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGESLNLNAIAIGLGLEHIEYEPEQFPGLVYRLDEPDVVALLFGSGKLVVT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G + +D+ A + LG
Sbjct: 160 GGTTPDDAAAAVDVIVEELTGLGL 183
>gi|397780477|ref|YP_006544950.1| TATA-box-binding protein [Methanoculleus bourgensis MS2]
gi|396938979|emb|CCJ36234.1| TATA-box-binding protein AltName: Full=TATA-box factor
[Methanoculleus bourgensis MS2]
Length = 237
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 99/159 (62%), Gaps = 16/159 (10%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 61 KIENIVASAKVTDSLDLNSLASQLKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTG 120
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD--------FKIQNMVGSCDVKFPIRLEGLVL 132
AKS ++ +R +Q LG + L+ +K+QN+V S D+ PI L + +
Sbjct: 121 AKSIDN-------LSRGLQILGDQLRALNIDIPENLTYKVQNIVTSADLGTPINLNKIAV 173
Query: 133 THG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 174 GFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIIT 212
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ +P+ L+F SGK++
Sbjct: 152 KVQNIVTSADLGTPINLNKIAVGFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLII 211
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED+R A ++ + LG
Sbjct: 212 TGGKQPEDARRAVQRILSELSSLGL 236
>gi|300709793|ref|YP_003735607.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|448297437|ref|ZP_21487483.1| transcription factor [Halalkalicoccus jeotgali B3]
gi|299123476|gb|ADJ13815.1| TATA-box binding family protein [Halalkalicoccus jeotgali B3]
gi|445579746|gb|ELY34139.1| transcription factor [Halalkalicoccus jeotgali B3]
Length = 185
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTGA
Sbjct: 9 IENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTGA 68
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
KS +D + + ++ L + + +QN+V S D+ + L + + G +
Sbjct: 69 KSTDDVHESLQIVFDKLRDLEIQVQDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENIE 128
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V L+F SGK+V+T
Sbjct: 129 YEPEQFPGLVYRLDEPKVVALLFGSGKLVIT 159
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP+ AL+F SGK+V T
Sbjct: 100 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPKVVALLFGSGKLVIT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K D+ A K ++ LG
Sbjct: 160 GGKQPVDAEHAVDKIVSRLEDLGL 183
>gi|20089077|ref|NP_615152.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638263|sp|Q8TU94.1|TBP2_METAC RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|19913938|gb|AAM03632.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 96/153 (62%), Gaps = 4/153 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKI-ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++NIV++ L DL+K+ + A YN +F ++ RI P+ LIF+SGK+VCTG
Sbjct: 7 IENIVASTRLAEDFDLQKLLDTGLKGAVYNKNKFPGLVYRIENPKAAFLIFASGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTHG-QF 137
K+ E+SR+A A + +G+ +L + +QN+V S +++ + L ++ G +
Sbjct: 67 TKNVENSRIALFNLANELNSIGYKGIYLKPEIHVQNVVASANLRTSLNLNAVLSAFGVEN 126
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FPGL+Y++ PR+V+L+F +GK+V+T
Sbjct: 127 VEYEPEVFPGLVYKLADPRVVVLVFRTGKLVIT 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKI--ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QN+V++ NL L+L + A N EY P+ F ++ ++ +PR L+F +GK+V
Sbjct: 99 HVQNVVASANLRTSLNLNAVLSAFGVENVEYEPEVFPGLVYKLADPRVVVLVFRTGKLVI 158
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED R + LG
Sbjct: 159 TGGKCPEDCEEGLRIIKTQLDNLGL 183
>gi|448335606|ref|ZP_21524747.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445616584|gb|ELY70205.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRSQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D + R +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDDVHESLRIVFDKLRELQIQVNEDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K ++ LG
Sbjct: 161 GGKKPEDAEHAVDKIVSRLEDLGL 184
>gi|10803585|ref|NP_045983.1| transcription factor [Halobacterium sp. NRC-1]
gi|10803718|ref|NP_046116.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120020|ref|NP_395608.1| transcription factor [Halobacterium sp. NRC-1]
gi|16120342|ref|NP_395930.1| transcription factor [Halobacterium sp. NRC-1]
gi|14423949|sp|Q48325.1|TBPB_HALSA RecName: Full=TATA-box-binding protein B; AltName: Full=Box
A-binding protein B; Short=BAP B; AltName: Full=TATA
sequence-binding protein B; Short=TBP B; AltName:
Full=TATA-box factor B
gi|1070345|emb|CAA63691.1| TATA box binding protein [Halobacterium salinarum]
gi|2822316|gb|AAC82822.1| TbpB [Halobacterium sp. NRC-1]
gi|2822449|gb|AAC82955.1| TbpB [Halobacterium sp. NRC-1]
gi|10584112|gb|AAG20743.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
gi|10584490|gb|AAG21065.1| transcription initiation factor IID [Halobacterium sp. NRC-1]
Length = 186
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +LG +L L +++ AEYNP+ F V+ R++EP++ LIF SGK+VCTG
Sbjct: 9 HIENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS +D A I++LG ++QN+V S ++ + L + + G +
Sbjct: 69 AKSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDDPDVVVLLFGSGKLVIT 160
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIVS+ +L L+L IA L EY P++F ++ R+ +P L+F SGK+V
Sbjct: 100 EVQNIVSSASLEQSLNLNAIAIGLGLEQIEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVI 159
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG ++ +++ A + +LG
Sbjct: 160 TGGQNPDEAEQALAHVQDRLTELGL 184
>gi|289596646|ref|YP_003483342.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
gi|289534433|gb|ADD08780.1| TATA-box binding family protein [Aciduliprofundum boonei T469]
Length = 181
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q++NIV++ +L KLDL KIAL AEY P++F +I R+ EP+T LIF SGK+ CTG
Sbjct: 5 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 64
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKI--QNMVGSCDVKFPIRLEGLVLTHG-QF 137
AK E + ++ G + + KI QN+V D+ + L + ++ G +
Sbjct: 65 AKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 123
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 124 VEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCT 156
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +LG +L+L IA L N EY P++F ++ RI EP+ L+F SGK+VCT
Sbjct: 97 VQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCT 156
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK +E+ A +K + ++ +G
Sbjct: 157 GAKKKEEIVEAIKKLKKELENVGL 180
>gi|254167829|ref|ZP_04874678.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|254167914|ref|ZP_04874763.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623120|gb|EDY35686.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
gi|197623205|gb|EDY35771.1| Transcription factor TFIID (or TATA-binding protein, TBP)
[Aciduliprofundum boonei T469]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 4/153 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q++NIV++ +L KLDL KIAL AEY P++F +I R+ EP+T LIF SGK+ CTG
Sbjct: 9 QIENIVASTSLADKLDLSKIALALDGAEYEPEQFPGLIYRLPEPKTAVLIFRSGKVNCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKI--QNMVGSCDVKFPIRLEGLVLTHG-QF 137
AK E + ++ G + + KI QN+V D+ + L + ++ G +
Sbjct: 69 AKDIERVEKTIKILVDKLKAAGIEV-YDNPKIVVQNIVAVYDLGVELNLTDIAMSLGLEN 127
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 128 VEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCT 160
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +LG +L+L IA L N EY P++F ++ RI EP+ L+F SGK+VCT
Sbjct: 101 VQNIVAVYDLGVELNLTDIAMSLGLENVEYEPEQFPGLVYRIDEPKVVLLLFGSGKVVCT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK +E+ A +K + ++ +G
Sbjct: 161 GAKKKEEIVEAIKKLKKELENVGL 184
>gi|91773461|ref|YP_566153.1| transcription factor [Methanococcoides burtonii DSM 6242]
gi|91712476|gb|ABE52403.1| TATA-box binding protein [Methanococcoides burtonii DSM 6242]
Length = 206
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L + DL KI AEYN ++F ++ R+ +P+ L+F+SGK+VCTG
Sbjct: 30 KIENVVASTKLAEEFDLIKIEAEFEGAEYNKQKFPGLVYRVTDPKAAFLVFTSGKVVCTG 89
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AK+ D + A+ + +G + +QN+V S D+ + L + + G +
Sbjct: 90 AKNVADVHIVIGNMAKKLNGIGIETIADPEITVQNIVASADLHATLNLNAIAIGLGLENI 149
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 150 EYEPEQFPGLVYRIADPKVVVLIFSSGKLVVT 181
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ RI +P+ LIFSSGK+V T
Sbjct: 122 VQNIVASADLHATLNLNAIAIGLGLENIEYEPEQFPGLVYRIADPKVVVLIFSSGKLVVT 181
Query: 80 GAKS 83
G KS
Sbjct: 182 GGKS 185
>gi|257076321|ref|ZP_05570682.1| transcription factor [Ferroplasma acidarmanus fer1]
Length = 184
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++NIV++ +L LDL +IAL +EY P++F +I R+++P+T LIF SGK+ CTGA
Sbjct: 9 IENIVASTSLAEHLDLSRIALALEGSEYEPEQFPGLIYRLKDPKTAVLIFRSGKVNCTGA 68
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-----DFKIQNMVGSCDVKFPIRLEGLVLTHG- 135
K+ E+ + + II KL AK D +QN+V D++ + L + ++ G
Sbjct: 69 KNLENVK---KTIDIIIDKLK-KAKIEVYDNPDIIVQNIVAVYDLESDLNLTDIAMSLGL 124
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ +P++VLL+F SGKVV T
Sbjct: 125 ENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCT 159
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV+ +L L+L IA L N EY P++F ++ R+ EP+ L+F SGK+VCT
Sbjct: 100 VQNIVAVYDLESDLNLTDIAMSLGLENVEYEPEQFPGLVYRVEEPKVVLLLFGSGKVVCT 159
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK E + A K + +QK+G
Sbjct: 160 GAKEESEIEQAVIKVKKELQKVGL 183
>gi|448736860|ref|ZP_21718941.1| transcription factor [Halococcus thailandensis JCM 13552]
gi|445805544|gb|EMA55752.1| transcription factor [Halococcus thailandensis JCM 13552]
Length = 203
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V + L ++DLK +AL A+++P++F VI R T LIF SGK+ CTG
Sbjct: 27 EVQNVVVSSTLNQEIDLKSVALDLTGADFDPEQFPGVIYRPESAEATCLIFRSGKITCTG 86
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
A S E +R + ++ LG + +QN+V D+ + LE + + G +
Sbjct: 87 AGSIEGARETVQATVETVRGLGIDVEEPTVTVQNIVSDADLGEELNLEAIAIGLGLEDIE 146
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLIYR+ +P V+L+F +GK V+T
Sbjct: 147 YEPEQFPGLIYRLDEPDTVVLLFGTGKTVIT 177
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS +LG +L+L+ IA L + EY P++F +I R+ EP T L+F +GK V T
Sbjct: 118 VQNIVSDADLGEELNLEAIAIGLGLEDIEYEPEQFPGLIYRLDEPDTVVLLFGTGKTVIT 177
Query: 80 GAKSEEDSRLAARKYARIIQKL 101
GA++++D+ A + II +L
Sbjct: 178 GAETQDDAEEALKT---IIDRL 196
>gi|393796700|ref|ZP_10380064.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia BG20]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + K DL I + EY+P +F ++ R++ P+T LIF +GKMVCTG+KS
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
EE +R A + + ++K G K +QN+V S ++ + LE T + S YEP
Sbjct: 72 EEMARSAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGLI+RM+ P+ V+LIF SGK+V T
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCT 158
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG K+ L+K A + Y P++F +I R+ +P+T LIFSSGK+V
Sbjct: 97 AVVTVQNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLV 156
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGF 103
CTGAK+E D + ++++ G
Sbjct: 157 CTGAKNESDVFRSVHNLHSLLEEKGL 182
>gi|159905083|ref|YP_001548745.1| transcription factor [Methanococcus maripaludis C6]
gi|226703561|sp|A9A840.1|TBP_METM6 RecName: Full=TATA-box-binding protein; AltName: Full=Box A-binding
protein; Short=BAP; AltName: Full=TATA sequence-binding
protein; Short=TBP; AltName: Full=TATA-box factor
gi|159886576|gb|ABX01513.1| TATA-box binding family protein [Methanococcus maripaludis C6]
Length = 181
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 93/150 (62%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ EP+ LIF SGK+ CTGAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSEPKVALLIFRSGKLNCTGAKC 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A K + +++ G +D +QNMV + ++ L+ ++ + + Y
Sbjct: 69 KEDAVIAIHKIIKELKEAGM--DLIDNPEVNVQNMVATTELGMEPNLDD--ISTLECTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V+T LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 NVQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K ED+ A K ++ +++L
Sbjct: 156 LKVIEDAYKAYDKISKTLKEL 176
>gi|298675995|ref|YP_003727745.1| TATA-box-binding family protein [Methanohalobium evestigatum
Z-7303]
gi|298288983|gb|ADI74949.1| TATA-box binding family protein [Methanohalobium evestigatum
Z-7303]
Length = 187
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L + DL KI AEYN ++F ++ R+ P+ L+F+SGK+VCTG
Sbjct: 11 KIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSNPKAAFLVFTSGKVVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AK+ +D + A+ + +G K +QN+V S D+ + L + + G +
Sbjct: 71 AKNVDDVHVVIGNMAKKLNDIGIETIKDPVITVQNIVASADLHAVLNLNAIAIGLGLENI 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVT 162
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
V +QNIV++ +L L+L IA L N EY P++F ++ RI +P+ LIFSSGK+
Sbjct: 100 VITVQNIVASADLHAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGKL 159
Query: 77 VCTGAKS 83
V TG KS
Sbjct: 160 VVTGGKS 166
>gi|297620217|ref|YP_003708322.1| TATA-box binding family protein [Methanococcus voltae A3]
gi|297379194|gb|ADI37349.1| TATA-box binding family protein [Methanococcus voltae A3]
Length = 181
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 96/153 (62%), Gaps = 7/153 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++ N+V + +G +DL+ A NAEY P++F ++ R+ +P+ LIF SGK+ CTG
Sbjct: 6 KIVNVVVSTQIGTDIDLEYAADVLDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTG 65
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
AKS+ D+ +A +K +++ G + +D IQNMV + ++ L+ ++ +
Sbjct: 66 AKSKSDAEIAIKKIIAELKEAGM--EIIDNPEVSIQNMVATTELGMEPNLDD--ISTLEC 121
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 122 TEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QN+V+T LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 98 IQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGL 156
Query: 82 KSEEDSRLAARKYARIIQKL 101
K +D+ A K +++L
Sbjct: 157 KKIDDAYTAFNKILTTLKEL 176
>gi|409096743|ref|ZP_11216767.1| transcription factor [Thermococcus zilligii AN1]
Length = 191
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 100/162 (61%), Gaps = 7/162 (4%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +L+L+K+ N++YNP+ F +I R +P+ LIFS
Sbjct: 2 VDMSRVKLRIENIVASVDLFAQLNLEKVIEICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARII-QKLGFPAKFL---DFKIQNMVGSCDVKFPIRLE 128
SGK+V TGAKS +D ++ K ++ +K+G +F IQNMV S D+ L+
Sbjct: 62 SGKLVVTGAKSVDDIKMGVNKLIELLSKKVG--TRFTKPPQIDIQNMVFSGDIGMEFNLD 119
Query: 129 GLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ L+ YEPE FPG+IYR+ P+ V+L+F SGK+V +
Sbjct: 120 AVALSLPN-CEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCS 160
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 55/80 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R+++P+ L+FSSGK+VC+G
Sbjct: 102 DIQNMVFSGDIGMEFNLDAVALSLPNCEYEPEQFPGVIYRVKDPKAVILLFSSGKIVCSG 161
Query: 81 AKSEEDSRLAARKYARIIQK 100
AKSE D+ A ++ R ++K
Sbjct: 162 AKSENDAWEAVKRLIRELEK 181
>gi|409723661|ref|ZP_11270805.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448722730|ref|ZP_21705261.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445788867|gb|EMA39568.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 189
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 11 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D + ++ L + + +QN+V S D++ + L + + G +
Sbjct: 71 AKSTADVHESLEIVFDKLRDLEIKVEDAPEIVVQNIVTSADLQKTLNLNAIAIGLGLENI 130
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 131 EYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 103 VQNIVTSADLQKTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPEVVALLFGSGKLVIT 162
Query: 80 GAKSEEDSRLAARK 93
G K D+ A K
Sbjct: 163 GGKEPADAEHAVDK 176
>gi|329764975|ref|ZP_08256562.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138512|gb|EGG42761.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia SFB1]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + K DL I + EY+P +F ++ R++ P+T LIF +GKMVCTG+KS
Sbjct: 12 NVVASATVDQKFDLNDITKKFPDTEYHPDQFPGLVFRLKNPKTATLIFRTGKMVCTGSKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
EE +R A + + ++K G K +QN+V S ++ + LE T + S YEP
Sbjct: 72 EEMARNAVKTVVQKLRKEGVKVKKDAVVTVQNIVASINLGGKVHLEKAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGLI+RM+ P+ V+LIF SGK+V T
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLVCT 158
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+++NLG K+ L+K A + Y P++F +I R+ +P+T LIFSSGK+V
Sbjct: 97 AVVTVQNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLV 156
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGF 103
CTGAK+E D + ++++ G
Sbjct: 157 CTGAKNESDVFRSVHNLHSLLEEKGL 182
>gi|340344813|ref|ZP_08667945.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519954|gb|EGP93677.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 186
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + KLDL I + EY+P++F + R++ P+T L+FSSGKMVCTGAKS
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E + A K I++K K IQN+V S ++ + LE T + S YEP
Sbjct: 72 QELAEDAVSKVVEILRKGKIKIKNDATVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVV 168
E FPGLI+RM+ P+ V+LIF SGK+V
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLV 156
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 54/79 (68%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIVS++NLG +++L++ A + Y P++F +I R+ +P+T LIF+SGK+VC GA
Sbjct: 101 IQNIVSSINLGGRVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGA 160
Query: 82 KSEEDSRLAARKYARIIQK 100
K E+D + + ++++
Sbjct: 161 KLEKDIHRSVHQIHSMLEE 179
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y PE FPG ++R+ P+ L+F SGK+V T
Sbjct: 36 EYHPEQFPGAVFRLKNPKTATLLFSSGKMVCT 67
>gi|355572992|ref|ZP_09043960.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
gi|354824004|gb|EHF08263.1| TATA-box-binding protein [Methanolinea tarda NOBI-1]
Length = 186
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 10 KIENIVASAKVTDYLDLPALASQIKDAEYNKKRFPGVVIRMQQPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS E +++ L K L +KIQN+V S D+ I L + +
Sbjct: 70 AKSIESLSQGLEILGNLLRGLNIDIPKKLTYKIQNIVTSADLGSGINLNKIAVGFNLDRI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 130 EYEPEQFPGLVYRLENPKVVVLLFGSGKLIIT 161
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG ++L KIA+ + EY P++F ++ R+ P+ L+F SGK++
Sbjct: 101 KIQNIVTSADLGSGINLNKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED+R A +K ++ LG
Sbjct: 161 TGGKEPEDARKAVQKILTDLKNLGL 185
>gi|448322383|ref|ZP_21511854.1| transcription factor [Natronococcus amylolyticus DSM 10524]
gi|445601591|gb|ELY55578.1| transcription factor [Natronococcus amylolyticus DSM 10524]
Length = 186
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ ++G +LDL+ +A+ A+Y+P+ F ++ R +P++ ALIF SGK+VCTG
Sbjct: 9 EIENVVASSSIGQELDLQSLAMDLEGADYDPENFPGLVYRTTDPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS E+ + + ++ L K + +QN+V S D+ + L + + G +
Sbjct: 69 AKSIENVHESLKIVFEELRDLQIEVKEGPEIVVQNIVSSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPNVVALLFGSGKLVVT 160
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPNVVALLFGSGKLVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+R A ++ LG
Sbjct: 161 GGKEVDDARQAIDVIVERLEDLGL 184
>gi|410670721|ref|YP_006923092.1| TATA box binding protein [Methanolobus psychrophilus R15]
gi|409169849|gb|AFV23724.1| TATA box binding protein [Methanolobus psychrophilus R15]
Length = 183
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L + DL KI AEYN ++F ++ R+ +P+ L+F+SGK+VCTG
Sbjct: 7 KIENVVASTKLAEEFDLTKIEAEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVCTG 66
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AK+ D A+ + +G + + +QN+V S D++ + L + + G +
Sbjct: 67 AKNVADVHTVIGNMAKKLNGIGIKTIEKPEITVQNIVASADLQAVLNLNAIAIGLGLENI 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 127 EYEPEQFPGLVYRIEDPKVVVLIFSSGKLVVT 158
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +L L+L IA L N EY P++F ++ RI +P+ LIFSSGK+V T
Sbjct: 99 VQNIVASADLQAVLNLNAIAIGLGLENIEYEPEQFPGLVYRIEDPKVVVLIFSSGKLVVT 158
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G KS E+ + + +G
Sbjct: 159 GGKSPENCEQGVEVVRQQLDSMGL 182
>gi|134046443|ref|YP_001097928.1| transcription factor [Methanococcus maripaludis C5]
gi|132664068|gb|ABO35714.1| TATA binding protein of transcription factor TFIID [Methanococcus
maripaludis C5]
Length = 181
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 7/150 (4%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+ A NAEY P++F ++ R+ +P+ LIF SGK+ CTGAK
Sbjct: 9 NVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNCTGAKC 68
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
+ED+ +A K + +++ G +D +QNMV + ++ L+ ++ + + Y
Sbjct: 69 KEDAVIAINKITKELKEAGM--DLIDNPEVNVQNMVATTELGMEPNLDD--ISTLECTEY 124
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 125 EPEQFPGLVYRLSDPKVVVLIFGSGKVVIT 154
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V+T LG + +L I+ EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 97 NVQNMVATTELGMEPNLDDIS-TLECTEYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITG 155
Query: 81 AKSEEDSRLAARKYARIIQKL 101
K ED+ A K ++ +++L
Sbjct: 156 LKVIEDAYRAYEKISKTLKEL 176
>gi|393796304|ref|ZP_10379668.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Candidatus Nitrosoarchaeum limnia BG20]
Length = 186
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + KLDL I + EY+P++F + R++ P+T L+FSSGKMVCTGAKS
Sbjct: 12 NVVASATIDQKLDLVDITKKFPDVEYHPEQFPGAVFRLKNPKTATLLFSSGKMVCTGAKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPAKF-LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E + A K +++K K + IQN+V S ++ + LE T + S YEP
Sbjct: 72 QELAETAVAKVVSMLKKGKIKIKNEAEVTIQNIVSSINLGGRVNLEQAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVV 168
E FPGLI+RM+ P+ V+LIF SGK+V
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLV 156
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 54/79 (68%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIVS++NLG +++L++ A + Y P++F +I R+ +P+T LIFSSGK+VC GA
Sbjct: 101 IQNIVSSINLGGRVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGA 160
Query: 82 KSEEDSRLAARKYARIIQK 100
K E+D + + ++++
Sbjct: 161 KLEKDVHRSVNQIHSLLEE 179
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y PE FPG ++R+ P+ L+F SGK+V T
Sbjct: 36 EYHPEQFPGAVFRLKNPKTATLLFSSGKMVCT 67
>gi|322368133|ref|ZP_08042702.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
gi|320552149|gb|EFW93794.1| TATA-box binding family protein [Haladaptatus paucihalophilus
DX253]
Length = 186
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ +G +LDL+ +A+ A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS D + +++L + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTADVHESLEIVFDKLRELNIQVNDDPEIVVQNIVTSADLGRNLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG L+L IA L N EY P++F ++ R+ EP AL+F SGK+V T
Sbjct: 101 VQNIVTSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPEVVALLFGSGKLVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED+ A K +++LG
Sbjct: 161 GGKKPEDAEQAVDKIVSRLEELGL 184
>gi|433593266|ref|YP_007282752.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433308304|gb|AGB34114.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 194
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 94/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ +G +L+L+ +A ++EYNP F ++ RI++P L+F SGK+VCTG
Sbjct: 9 KIENVVASTGVGQELNLEALADDLPHSEYNPGNFPGMVHRIQDPNAVTLLFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A+S D A + ++ LG + IQN+V S D+ I L + + G + +
Sbjct: 69 AQSTADVTDALNILFQDLRDLGIDVVDQPEITIQNIVSSGDLGEQIDLNAIAIGLGLEHT 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLTSPPVVVLLFGSGKLVIT 160
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG ++DL IA L + EY P++F ++ R+ P L+F SGK+V T
Sbjct: 101 IQNIVSSGDLGEQIDLNAIAIGLGLEHTEYEPEQFPGLVYRLTSPPVVVLLFGSGKLVIT 160
Query: 80 GAKSEEDSRLA 90
GAK+ ++++ A
Sbjct: 161 GAKTRDNAQSA 171
>gi|20089176|ref|NP_615251.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638262|sp|Q8TTZ7.1|TBP3_METAC RecName: Full=TATA-box-binding protein 3; AltName: Full=Box
A-binding protein 3; Short=BAP 3; AltName: Full=TATA
sequence-binding protein 3; Short=TBP 3; AltName:
Full=TATA-box factor 3
gi|19914048|gb|AAM03731.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 185
Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
S ++N+V++ L + DL KI AEYN +F ++ RI P+ LIF+SGK+
Sbjct: 3 STITIENVVASTALATEFDLVKIMDSGLEGAEYNKTKFPGLVYRIDNPKAAFLIFTSGKV 62
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTH 134
VCTGAK+ ++ A A ++ +G L + +QN+V S D+K + L + +
Sbjct: 63 VCTGAKTINNAHKAITNLANKLKDIGCDKINLEPEIHVQNIVASADLKTTLNLNTIAIAF 122
Query: 135 G-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE+FPGLIYR+ P++V+L+F SGK+V+T
Sbjct: 123 GLENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVIT 159
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
+QNIV++ +L L+L IA+ N EY P+ F +I R+ P+ L+FSSGK+V
Sbjct: 99 HVQNIVASADLKTTLNLNTIAIAFGLENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVI 158
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K EED R + LG
Sbjct: 159 TGGKCEEDCNGGLRIVRKEFDNLGL 183
>gi|256087298|ref|XP_002579809.1| TATA-binding protein-related [Schistosoma mansoni]
gi|238665296|emb|CAZ36048.1| TATA-binding protein-related [Schistosoma mansoni]
Length = 738
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V +L C L LK+IA + N EY + VIMR+R P T A I+SSGK+ CTGA
Sbjct: 67 ITNVVVMASLQCHLRLKEIARTSVNVEYKALQ-NHVIMRLRSPYTVATIWSSGKIWCTGA 125
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
S +++ AR+ AR I K GFP F +++ N++ +C + F +RLE LV SYE
Sbjct: 126 NSLAKAKIGARRIARRIAKCGFPCHFSKYRVVNIMATCKLPFGVRLEELVKERPMQMSYE 185
Query: 142 PELFPGLIYRM-VKPRIVLLIFVSGKVVL 169
PEL PGL ++ + L +F +G++V+
Sbjct: 186 PELAPGLTFKTDINSSTSLKLFSTGRIVI 214
>gi|340503459|gb|EGR30047.1| tata-box binding protein, putative [Ichthyophthirius multifiliis]
Length = 184
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 11/146 (7%)
Query: 34 KLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARK 93
K DL I +N +YNP+RF AV MRI+EP+ T LI++SG M G KS E+S+ AA K
Sbjct: 9 KFDLTTIGQKCKNTQYNPRRFPAVFMRIKEPKATGLIYASGNMTIVGTKSIEESQRAAEK 68
Query: 94 YARIIQ-----KLGFPAKFLDFKIQ--NMVGSCDVKFPIRLEGLVL--THGQFSSYEPEL 144
+ I+ K G +F + KIQ N+V SC + + I L L H +F++YE +
Sbjct: 69 MLKDIKRALEIKEG-ECEFQEKKIQVRNIVASCKLGYKINLNSLNEDNEHNKFATYE-DT 126
Query: 145 FPGLIYRMVKPRIVLLIFVSGKVVLT 170
FPGLIY+ IV LIF SGK+V T
Sbjct: 127 FPGLIYKKFNSNIVALIFASGKMVFT 152
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL---HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
Q++NIV++ LG K++L + H + A Y F +I + ALIF+SGKMV
Sbjct: 92 QVRNIVASCKLGYKINLNSLNEDNEHNKFATYED-TFPGLIYKKFNSNIVALIFASGKMV 150
Query: 78 CTGAKSEEDSRLAARKYARIIQKL 101
TGAKSE+D + A + + QK
Sbjct: 151 FTGAKSEQDIKNAFEQMGQAFQKF 174
>gi|379335155|gb|AFD03144.1| 2-alkenal reductase [uncultured bacterium W5-77b]
Length = 186
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ + KLDLK I + + E++P F + R++ P+T L+F +GKMVCTG+
Sbjct: 10 IENVVASATIDQKLDLKDITMKFPDVEWHPDMFPGAVFRLKNPKTATLLFRTGKMVCTGS 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSEE +R A + + ++K K IQN+V S ++ + LE T + S Y
Sbjct: 70 KSEEIARKAVKTVVQELRKGKIKIKKEATVTIQNIVASINLGGRVHLEQAARTLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+R++ P+ V+LIF SGK+V T
Sbjct: 129 EPEQFPGLIHRVLDPKTVILIFSSGKLVCT 158
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIV+++NLG ++ L++ A + Y P++F +I R+ +P+T LIFSSGK+VCTG
Sbjct: 101 IQNIVASINLGGRVHLEQAARTLPRSMYEPEQFPGLIHRVLDPKTVILIFSSGKLVCTGG 160
Query: 82 KSEED 86
K+E+D
Sbjct: 161 KTEKD 165
>gi|407463138|ref|YP_006774455.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046760|gb|AFS81513.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 187
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 97/153 (63%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P++F ++ R++ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLKSPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKL--GFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSEE +A + ++QKL G D +QN+V + ++ I LE T +
Sbjct: 70 KSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK
Sbjct: 95 NDAVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGK 154
Query: 76 MVCTGAKSEED 86
+VCTGAK E D
Sbjct: 155 LVCTGAKKESD 165
>gi|296241961|ref|YP_003649448.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
gi|296094545|gb|ADG90496.1| TATA binding protein of transcription factor TFIID [Thermosphaera
aggregans DSM 11486]
Length = 193
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L +LDL+ I Y P +F +I R+ +P+TTALIF SGKMV TG
Sbjct: 12 KIENIVATVILEHELDLELIETRIPAITYKPDQFPGLIFRLDKPKTTALIFKSGKMVVTG 71
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
AKS + A ++ +++ K +IQN+V S D+ + LE + S
Sbjct: 72 AKSTQQLIEAVKRMIKVLLKYDIKVTGKPRIQIQNIVASGDIGAYVHLEKAAYLL-EDSM 130
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 131 YEPEQFPGLIHRMRSPRVVLLIFSSGKMVIT 161
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ ++G + L+K A ++ Y P++F +I R+R PR LIFSSGKMV TG
Sbjct: 103 QIQNIVASGDIGAYVHLEKAAYLLEDSMYEPEQFPGLIHRMRSPRVVLLIFSSGKMVITG 162
>gi|448335944|ref|ZP_21525067.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|448404754|ref|ZP_21572552.1| transcription factor [Haloterrigena limicola JCM 13563]
gi|445614729|gb|ELY68395.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|445663265|gb|ELZ16018.1| transcription factor [Haloterrigena limicola JCM 13563]
Length = 186
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P ++N+V++ + +L+L+ +A +Y+ +RF + R + P++ ALIF SGK+VCT
Sbjct: 8 PTIENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCT 67
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QF 137
GAKS +D + ++ LG + IQN+V S D+ + L + + G +
Sbjct: 68 GAKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLEN 127
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM P +V LIF SGKVV+T
Sbjct: 128 IEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVT 160
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG ++L IA+ N EY P++F ++ R+ +P LIF SGK+V T
Sbjct: 101 IQNIVSSGDLGSAVNLNAIAIGFGLENIEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK D+ A + + +LG
Sbjct: 161 GAKEPADAGRALDVISSRLDELGL 184
>gi|358332952|dbj|GAA51533.1| transcription initiation factor TFIID TATA-box-binding protein
[Clonorchis sinensis]
Length = 696
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+ N+V ++ C L LK+IA + + EY + VIMR+R P T A I+SSGK+ CTGA
Sbjct: 66 ITNVVVMASMRCHLRLKEIARSSVDVEYKALQ-NHVIMRLRSPYTVATIWSSGKIWCTGA 124
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYE 141
S ++ AR+ AR I K GFP +F +++ N++ +C + F +RLE LV YE
Sbjct: 125 NSLAKAKTGARRIARRIAKCGFPCRFSKYRVVNIMATCHLPFRVRLEELVKEKPMQMCYE 184
Query: 142 PELFPGLIYRM-VKPRIVLLIFVSGKVVL 169
PEL PGL ++ + +L +F +G+VV+
Sbjct: 185 PELAPGLTFKTDLNSSTLLKVFSTGRVVI 213
>gi|379994425|gb|AFD22839.1| TATA-box-binding protein, partial [Collodictyon triciliatum]
Length = 80
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 57/65 (87%)
Query: 106 KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSG 165
+FLDFKIQN+VGSCDV FPIRLEGL H + SYEPELFPGLIYRM +P+IVLLIFVSG
Sbjct: 3 RFLDFKIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSG 62
Query: 166 KVVLT 170
K+VLT
Sbjct: 63 KIVLT 67
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIA-LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A +H Y P+ F +I R++EP+ LIF SGK+V T
Sbjct: 8 KIQNIVGSCDVSFPIRLEGLAHVHHSYCSYEPELFPGLIYRMQEPKIVLLIFVSGKIVLT 67
Query: 80 GAKSEED 86
GAK+ D
Sbjct: 68 GAKTRLD 74
>gi|227827548|ref|YP_002829328.1| transcription factor [Sulfolobus islandicus M.14.25]
gi|227830235|ref|YP_002832015.1| transcription factor [Sulfolobus islandicus L.S.2.15]
gi|229579050|ref|YP_002837448.1| transcription factor [Sulfolobus islandicus Y.G.57.14]
gi|229582199|ref|YP_002840598.1| transcription factor [Sulfolobus islandicus Y.N.15.51]
gi|229584751|ref|YP_002843253.1| transcription factor [Sulfolobus islandicus M.16.27]
gi|238619705|ref|YP_002914531.1| transcription factor [Sulfolobus islandicus M.16.4]
gi|284997658|ref|YP_003419425.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|385773217|ref|YP_005645783.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
gi|385775851|ref|YP_005648419.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|227456683|gb|ACP35370.1| TATA-box binding family protein [Sulfolobus islandicus L.S.2.15]
gi|227459344|gb|ACP38030.1| TATA-box binding family protein [Sulfolobus islandicus M.14.25]
gi|228009764|gb|ACP45526.1| TATA-box binding family protein [Sulfolobus islandicus Y.G.57.14]
gi|228012915|gb|ACP48676.1| TATA-box binding family protein [Sulfolobus islandicus Y.N.15.51]
gi|228019801|gb|ACP55208.1| TATA-box binding family protein [Sulfolobus islandicus M.16.27]
gi|238380775|gb|ACR41863.1| TATA-box binding family protein [Sulfolobus islandicus M.16.4]
gi|284445553|gb|ADB87055.1| TATA-box binding protein [Sulfolobus islandicus L.D.8.5]
gi|323474599|gb|ADX85205.1| TATA-box binding family protein [Sulfolobus islandicus REY15A]
gi|323477331|gb|ADX82569.1| TATA-box binding family protein [Sulfolobus islandicus HVE10/4]
Length = 181
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 26 VSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE 85
++TV L LDL + N EY+P +F +I R+ +P+ TALIF SGKMV TGAKS E
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 86 DSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+ A ++ + ++K G K + +IQN+V S ++ + L+ + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYGI--KIMGKPKIQIQNIVASANLHVNVNLDKAAFLL-ENNMYEP 117
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVIT 145
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
MG Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSG
Sbjct: 81 MGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSG 140
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLG 102
KMV TGAK E++ A + RI KL
Sbjct: 141 KMVITGAKREDEVSKAVK---RIFDKLA 165
>gi|408406051|ref|YP_006864035.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
gi|408366647|gb|AFU60377.1| TATA-box-binding protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 187
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ + ++L I + EY+P +F ++ R+R P+T LIFSSGKMVCTGA
Sbjct: 10 IENVVASATVNQTVNLNLITQIFPDVEYHPDQFPGLVFRLRSPKTATLIFSSGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLE--GLVLTHGQFS 138
KSE+ + A + ++K G P + +IQN+V S + I LE VL S
Sbjct: 70 KSEKMAIQAVKNVVLKLKKGGIPLEHEPQIEIQNIVASASLGGKIHLELAARVLPR---S 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 127 MYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 46/66 (69%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QNIV++ +LG K+ L+ A + Y P++F +I R+ +P+T L+F+SGK+VCTG
Sbjct: 100 EIQNIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTG 159
Query: 81 AKSEED 86
AK E +
Sbjct: 160 AKKESE 165
>gi|390938384|ref|YP_006402122.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
gi|390191491|gb|AFL66547.1| TATA binding protein of transcription factor TFIID [Desulfurococcus
fermentans DSM 16532]
Length = 194
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L LDL+ I + Y P +F +I R+ +PR TAL+F SGKMV TG
Sbjct: 11 RVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
KS + A +K + K G +IQN+V D+ + LE H + S
Sbjct: 71 TKSTQQLVEAVKKIIKTFVKNGVNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSM 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 130 YEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 160
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV+ ++ ++L+K A H ++ Y P++F +I R+R+PR LIFSSGKMV TG
Sbjct: 102 QIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVITG 161
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK E + A AR + K G
Sbjct: 162 AKEEVEVERAVNNIARQLYKAG 183
>gi|433593455|ref|YP_007296196.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|433307965|gb|AGB33776.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
Length = 193
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P ++N+V++ + +L+L+ +A +Y+ +RF + R + P++ ALIF SGK+VCT
Sbjct: 15 PTIENVVASTGVDRELNLEAVAEDLDGTDYDQERFPGAVYRTQNPKSAALIFRSGKIVCT 74
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QF 137
GAKS +D + ++ LG + IQN+V S D+ + L + + G +
Sbjct: 75 GAKSTDDVYESLNIVFDELRGLGIDVPSNPEITIQNIVSSGDLGSAVNLNAIAIGFGLEN 134
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YRM P +V LIF SGKVV+T
Sbjct: 135 IEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVT 167
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG ++L IA+ N EY P++F ++ R+ +P LIF SGK+V T
Sbjct: 108 IQNIVSSGDLGSAVNLNAIAIGFGLENIEYEPEQFPGLVYRMDDPNVVTLIFGSGKVVVT 167
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK D+ A + + +LG
Sbjct: 168 GAKEPADAGRALDVISSRLDELGL 191
>gi|218883586|ref|YP_002427968.1| transcription factor [Desulfurococcus kamchatkensis 1221n]
gi|218765202|gb|ACL10601.1| transcription factor - TATA-box-binding protein [Desulfurococcus
kamchatkensis 1221n]
Length = 194
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV+TV L LDL+ I + Y P +F +I R+ +PR TAL+F SGKMV TG
Sbjct: 11 RVENIVATVILEHDLDLELIETRIPSITYKPDQFPGLIFRLDKPRATALVFKSGKMVVTG 70
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
KS + A +K + K G +IQN+V D+ + LE H + S
Sbjct: 71 TKSTQQLVEAVKKIIKTFVKNGVNVHGRPRVQIQNIVAGGDIHAYVNLEKAAY-HLEDSM 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 130 YEPEQFPGLIHRMRDPRVVLLIFSSGKMVIT 160
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV+ ++ ++L+K A H ++ Y P++F +I R+R+PR LIFSSGKMV TG
Sbjct: 102 QIQNIVAGGDIHAYVNLEKAAYHLEDSMYEPEQFPGLIHRMRDPRVVLLIFSSGKMVITG 161
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK E + A AR + K G
Sbjct: 162 AKEEVEVERAVNNIARQLYKAG 183
>gi|10803661|ref|NP_046059.1| transcription factor [Halobacterium sp. NRC-1]
gi|169237306|ref|YP_001690512.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|169237349|ref|YP_001690554.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|14423947|sp|O52018.1|TBPD_HALSA RecName: Full=TATA-box-binding protein D; AltName: Full=Box
A-binding protein D; Short=BAP D; AltName: Full=TATA
sequence-binding protein D; Short=TBP D; AltName:
Full=TATA-box factor D
gi|2822392|gb|AAC82898.1| TbpD [Halobacterium sp. NRC-1]
gi|167728372|emb|CAP15175.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
gi|167728865|emb|CAP15756.1| TATA-binding transcription initiation factor [Halobacterium
salinarum R1]
Length = 186
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q++N+V++ +L +L L+++A AEYNP F VI R+ +P++ LIF SGK VCTG
Sbjct: 9 QIENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGF---PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-Q 136
A+S +D A ++ LG P+ + +QN+V S + + L + + G +
Sbjct: 69 AQSVDDVHDAISIVVEDLRDLGIDIPPSPPV--HVQNIVCSGSLDQDLNLNAIAIGLGLE 126
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V+L+F SGK+V+T
Sbjct: 127 DVEYEPEQFPGLVYRLNDPDVVVLLFGSGKLVIT 160
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 14 DMGGSVP-----QLQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRT 66
D+G +P +QNIV + +L L+L IA L + EY P++F ++ R+ +P
Sbjct: 88 DLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLEDVEYEPEQFPGLVYRLNDPDV 147
Query: 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
L+F SGK+V TG + +D+ A + LG
Sbjct: 148 VVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDLGL 184
>gi|118638415|gb|ABL09366.1| TATA-box binding protein alternative transcript cTBP2 [Gallus
gallus]
Length = 81
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/55 (96%), Positives = 54/55 (98%)
Query: 116 VGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
VGSCDVKFPIRLEGLVLTH QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 1 VGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 55
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 43 HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
H + + Y P+ F +I R+ +PR LIF SGK+V TGAK
Sbjct: 19 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAK 58
>gi|268324523|emb|CBH38111.1| TATA-box binding protein 2 [uncultured archaeon]
Length = 183
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 7/163 (4%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTAL 69
M+ VD+ +++N+V+ + LDL+ + A + K+F ++ R +EP++ L
Sbjct: 1 MSEVDI-----KIENVVANARITESLDLEYVESQLEEAMFTKKKFPGLVYRTKEPKSAFL 55
Query: 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLE 128
IF SGK+VCTGAK++E R+ K + ++ +G + +FK+QN+V S D+ + L
Sbjct: 56 IFRSGKVVCTGAKTKEGVRVVMDKLSTDLRGIGIEVEEHPEFKVQNIVASADLGKELNLG 115
Query: 129 GLVL-THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+V+ + YEPE+FPGL+YR+ P+ +LIF SGK+V+T
Sbjct: 116 AIVMGLELEGMEYEPEVFPGLVYRITDPKSAILIFSSGKLVIT 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKI--ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +LG +L+L I L EY P+ F ++ RI +P++ LIFSSGK+V
Sbjct: 98 KVQNIVASADLGKELNLGAIVMGLELEGMEYEPEVFPGLVYRITDPKSAILIFSSGKLVI 157
Query: 79 TGAKSEEDSR 88
TG K+ +D +
Sbjct: 158 TGGKTLDDCK 167
>gi|154150459|ref|YP_001404077.1| transcription factor [Methanoregula boonei 6A8]
gi|153999011|gb|ABS55434.1| TATA-box binding [Methanoregula boonei 6A8]
Length = 186
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A ++AEYN KRF V++R+++P+ AL+F SGK+V TG
Sbjct: 10 KIENIVASAKVTDYLDLPALASKIKDAEYNKKRFPGVVLRMQDPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS + ++ L K L +KIQN+V S D+ I L + +
Sbjct: 70 AKSVDSLSKGLTILGNQLRSLDIDIPKKLTYKIQNIVTSADLATAINLNKIAVGFNLDRI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 130 EYEPEQFPGLVYRLENPKVVVLLFGSGKLIIT 161
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +L ++L KIA+ + EY P++F ++ R+ P+ L+F SGK++
Sbjct: 101 KIQNIVTSADLATAINLNKIAVGFNLDRIEYEPEQFPGLVYRLENPKVVVLLFGSGKLII 160
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED++ A K ++ LG
Sbjct: 161 TGGKEPEDAKKAVVKILSDLRSLGL 185
>gi|15897830|ref|NP_342435.1| transcription factor [Sulfolobus solfataricus P2]
gi|284175636|ref|ZP_06389605.1| transcription factor [Sulfolobus solfataricus 98/2]
gi|384434381|ref|YP_005643739.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
gi|13814131|gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus P2]
gi|261602535|gb|ACX92138.1| TATA-box binding family protein [Sulfolobus solfataricus 98/2]
Length = 181
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 6/148 (4%)
Query: 26 VSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE 85
++TV L LDL + N EY+P +F +I R+ +P+ TALIF SGKMV TGAKS E
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 86 DSRLAARKYARIIQKLGFPAKFL---DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+ A ++ + ++K G K + +IQN+V S ++ + L+ + + YEP
Sbjct: 61 ELIKAVKRIIKTLKKYGI--KIVGKPKIQIQNIVASANLHVNVNLDKAAFLL-ENNMYEP 117
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGLI+RM PR+VLLIF SGK+V+T
Sbjct: 118 EQFPGLIFRMDDPRVVLLIFSSGKMVIT 145
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ +PR LIFSSGKMV TG
Sbjct: 87 QIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVITG 146
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK E++ A + RI KL
Sbjct: 147 AKREDEVSKAVK---RIFDKLA 165
>gi|21227130|ref|NP_633052.1| transcription factor [Methanosarcina mazei Go1]
gi|452209606|ref|YP_007489720.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638251|sp|Q8PY36.1|TBP2_METMA RecName: Full=TATA-box-binding protein 2; AltName: Full=Box
A-binding protein 2; Short=BAP 2; AltName: Full=TATA
sequence-binding protein 2; Short=TBP 2; AltName:
Full=TATA-box factor 2
gi|20905461|gb|AAM30724.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099508|gb|AGF96448.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M S +++N+V++ L + DL I AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MSESSIKIENVVASTKLAEEFDLTVIESQFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTGAK+ D A+ + +G + +QN+V S D+ + L + +
Sbjct: 61 KVVCTGAKNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE FPGL+YR+ +P++V+LIF SGK+V+T
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK
Sbjct: 95 PQITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGK 154
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+V TG K+ ED + + +G
Sbjct: 155 LVVTGGKTPEDCESGVEVVRQQLDNMGL 182
>gi|16517082|gb|AAL24503.1|AF418015_1 TATA box-binding protein-like protein [Crypthecodinium cohnii]
Length = 220
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 104/184 (56%), Gaps = 14/184 (7%)
Query: 1 MSPSTP-GPPMTPVDMGGSVPQLQN----------IVSTVNLGCKLDLKKIALHARNAEY 49
M P+ P PM D+ + L I++ NL C++DL+++A R+AEY
Sbjct: 13 MEPTEPTAEPMQETDLPDNAEDLPEEVAASVTAFTIMAKFNLRCEIDLRQLAFALRHAEY 72
Query: 50 NPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLG---FPAK 106
NP++ +++ +R+ EPR TA++ SSG + TG ++ + +A+K AR++Q+ G K
Sbjct: 73 NPRKHSSLTLRLVEPRATAMVRSSGVVSITGVLDLDELKQSAKKVARLVQRSGEGHEKVK 132
Query: 107 FLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGK 166
F F I +++ + FPIRL+ L + + YEPEL+ G I+R +P+ L+ GK
Sbjct: 133 FAGFTICSILAKASMGFPIRLDQLAAKWRRNALYEPELYCGCIFRTTRPKCTYLLTSGGK 192
Query: 167 VVLT 170
V+++
Sbjct: 193 VMIS 196
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHAR-NAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAK 82
+I++ ++G + L ++A R NA Y P+ + I R P+ T L+ S GK++ +G +
Sbjct: 140 SILAKASMGFPIRLDQLAAKWRRNALYEPELYCGCIFRTTRPKCTYLLTSGGKVMISGFR 199
Query: 83 SEEDSRLAARK 93
+ ED A ++
Sbjct: 200 NMEDVHEAVQR 210
>gi|161529027|ref|YP_001582853.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
gi|160340328|gb|ABX13415.1| TATA-box binding family protein [Nitrosopumilus maritimus SCM1]
Length = 187
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P++F ++ R+ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLSTPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKL--GFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSEE +A + ++QKL G D +QN+V + ++ I LE T +
Sbjct: 70 KSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK
Sbjct: 95 NDAVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGK 154
Query: 76 MVCTGAKSEED 86
+VCTGAK E D
Sbjct: 155 LVCTGAKKESD 165
>gi|452207289|ref|YP_007487411.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
gi|452083389|emb|CCQ36681.1| TATA-binding transcription initiation factor [Natronomonas
moolapensis 8.8.11]
Length = 187
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ ++ +L L +A+ ++Y+P F +I R +EP+ LIF SGK+VCTG
Sbjct: 9 DIENVVASTDIDQELALDSLAMDLSGSDYDPDNFPGLIYRTQEPQAANLIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A + +D + + ++ LG + +QN+V S D++ + L + + G +
Sbjct: 69 ANTVDDVHSSLQIVCETLRDLGIDVIEAPTITVQNIVSSADLRAQLNLNAIAIGFGLEDV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGKVV+T
Sbjct: 129 EYEPEQFPGLVYRLDTPDVVTLLFGSGKVVIT 160
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +L +L+L IA+ + EY P++F ++ R+ P L+F SGK+V T
Sbjct: 101 VQNIVSSADLRAQLNLNAIAIGFGLEDVEYEPEQFPGLVYRLDTPDVVTLLFGSGKVVIT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK+ + + A +K + + +LG
Sbjct: 161 GAKTPDAAEEALKKVSGELSELGL 184
>gi|448732580|ref|ZP_21714852.1| transcription factor [Halococcus salifodinae DSM 8989]
gi|445804522|gb|EMA54773.1| transcription factor [Halococcus salifodinae DSM 8989]
Length = 191
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+ QN+V++ +G ++DL+ +A+ A+++P +F +I R + + T LIF SG + CTG
Sbjct: 15 ETQNVVASSGIGQEIDLESVAMDLTGADFDPGQFPGLIYRPDDAKATCLIFRSGAITCTG 74
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS-S 139
A+S E+ + + +LG + D +QN+V D+ + L + + G S
Sbjct: 75 AQSIEEVQETVHTAVGALVELGIDVEAPDVTVQNIVSGADLGETLNLNAIAIGLGLESVE 134
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P +V L+F SGK+V+T
Sbjct: 135 YEPEQFPGLVYRLDDPDVVALLFGSGKMVIT 165
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS +LG L+L IA L + EY P++F ++ R+ +P AL+F SGKMV T
Sbjct: 106 VQNIVSGADLGETLNLNAIAIGLGLESVEYEPEQFPGLVYRLDDPDVVALLFGSGKMVIT 165
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GAK +++ A + R + LG
Sbjct: 166 GAKIHDEAEAALEEIIRRLNDLGL 189
>gi|118575298|ref|YP_875041.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
gi|118193819|gb|ABK76737.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Cenarchaeum symbiosum A]
Length = 186
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL + + EYNP++F ++ R+ P+T LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLNDVTKKFPDTEYNPEQFPGLVFRLTSPKTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY 140
KSE+ + A R + ++K G K +QN+V + ++ I LE + S Y
Sbjct: 70 KSEDMAVKAVRTVVQKLRKSGIKIKKDAVVVVQNIVAAINLGGKIHLEKAARVLPR-SMY 128
Query: 141 EPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
EPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 129 EPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK+VCTGA
Sbjct: 101 VQNIVAAINLGGKIHLEKAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA 160
Query: 82 KSEED 86
K E D
Sbjct: 161 KKESD 165
>gi|424811982|ref|ZP_18237222.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756204|gb|EGQ39787.1| TATA binding protein of transcription factor TFIID [Candidatus
Nanosalinarum sp. J07AB56]
Length = 187
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++N+V++ L ++ L +IA++ N EY P++F ++ R+ EP+ AL+F SGK+VCTG
Sbjct: 13 KIENVVASTTLDRRMPLDRIAIYLENTEYEPEQFPGLVYRLDEPKAAALLFGSGKVVCTG 72
Query: 81 AKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSS 139
+S ++ A K +++ K D +QNMV S ++ + L + +
Sbjct: 73 TQSPTQAKEAVHKIIDELREADIEIGKKPDITVQNMVASSELDATLNLNRIAF-ELVGTE 131
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V L+F SG++V T
Sbjct: 132 YEPEQFPGLVYRLDEPKVVFLLFSSGRIVCT 162
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QN+V++ L L+L +IA EY P++F ++ R+ EP+ L+FSSG++VCTG
Sbjct: 105 VQNMVASSELDATLNLNRIAFELVGTEYEPEQFPGLVYRLDEPKVVFLLFSSGRIVCTGG 164
Query: 82 KSEEDSRLAARKYARIIQKLG 102
K+ +D K +++LG
Sbjct: 165 KTYDDVENGIEKLKENLKELG 185
>gi|20093119|ref|NP_619194.1| transcription factor [Methanosarcina acetivorans C2A]
gi|24638258|sp|Q8TI26.1|TBP1_METAC RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|19918456|gb|AAM07674.1| TATA-binding protein [Methanosarcina acetivorans C2A]
Length = 183
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M S +++N+V++ L + DL I AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MSESSIKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTGAK+ D A+ + +G + +QN+V S D+ + L + +
Sbjct: 61 KVVCTGAKNVADVHTVIGNMAKKLNSIGIKTMENPQITVQNIVASADLHTILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE FPGL+YR+ +P++V+LIF SGK+V+T
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVVT 158
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK
Sbjct: 95 PQITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGK 154
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+V TG KS ED + + +G
Sbjct: 155 LVVTGGKSPEDCERGVEVVRQQLDNMGL 182
>gi|329766561|ref|ZP_08258104.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393796800|ref|ZP_10380164.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329136816|gb|EGG41109.1| TATA-box binding family protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 187
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P++F ++ R++ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKL--GFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSE+ +A + ++QKL G D +QN+V + ++ I LE T +
Sbjct: 70 KSED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK
Sbjct: 95 NDAVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGK 154
Query: 76 MVCTGAKSEED 86
+VCTGAK E D
Sbjct: 155 LVCTGAKKESD 165
>gi|407465522|ref|YP_006776404.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
gi|407048710|gb|AFS83462.1| TATA-box binding family protein [Candidatus Nitrosopumilus sp. AR2]
Length = 187
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P++F ++ R+ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLIEITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP----AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSEE +A + ++QKL K +QN+V + ++ I LE T +
Sbjct: 70 KSEE---MAIKAVNTVVQKLRKGKIKIKKDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK+V
Sbjct: 97 AVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKESD 165
>gi|248883|gb|AAB22100.1| transcription factor IID, TFIID [Saccharomyces cerevisiae=yeast,
Peptide Partial Mutant, 61 aa]
Length = 61
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/58 (86%), Positives = 54/58 (93%)
Query: 113 QNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
QN+VGSCDVKFPIRLEGL +HG FSSYEPELFPGLIYRMVKP+IVL IFVSGK+VLT
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLT 58
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 23 QNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ IF SGK+V TGA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLFIFVSGKIVLTGA 60
Query: 82 K 82
K
Sbjct: 61 K 61
>gi|449545513|gb|EMD36484.1| hypothetical protein CERSUDRAFT_95784 [Ceriporiopsis subvermispora
B]
Length = 154
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%), Gaps = 16/112 (14%)
Query: 59 MRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGS 118
MR+ + + LIF SGK+V TGAKSE+++ LA+RK ARI+QKL F F + KIQN +GS
Sbjct: 1 MRVCDLKMAVLIFVSGKLVVTGAKSEDNTCLASRKSARIVQKLEFDPNFSELKIQNTMGS 60
Query: 119 CDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
D FSS+EPELFPGL Y M+KP++VLLIF+S VVLT
Sbjct: 61 RD----------------FSSFEPELFPGLTYSMIKPKVVLLIFMSRMVVLT 96
>gi|433591131|ref|YP_007280627.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|448334667|ref|ZP_21523835.1| transcription factor [Natrinema pellirubrum DSM 15624]
gi|433305911|gb|AGB31723.1| TATA-box binding protein (TBP), component of TFIID and TFIIIB
[Natrinema pellirubrum DSM 15624]
gi|445619396|gb|ELY72936.1| transcription factor [Natrinema pellirubrum DSM 15624]
Length = 186
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++N+V++ ++G +L+L+ +A+ + A+Y+P++F ++ R + P++ ALIF SGK+VCTG
Sbjct: 9 NIENVVASTSIGQELELESVAMDLKGADYDPEQFPGLVYRTQNPKSAALIFRSGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
AKS + + +++L K + +QN+V S D+ + L + + G +
Sbjct: 69 AKSTDAVHESLHIVFDKLRELQIQVEKNPEIIVQNIVSSADLGRTLNLNAIAIGLGLENI 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 129 EYEPEQFPGLVYRLDQPEVVALLFGSGKLVVT 160
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L N EY P++F ++ R+ +P AL+F SGK+V T
Sbjct: 101 VQNIVSSADLGRTLNLNAIAIGLGLENIEYEPEQFPGLVYRLDQPEVVALLFGSGKLVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D++ A +++LG
Sbjct: 161 GGKKGDDAKQAVDVITTRLEELGL 184
>gi|409723670|ref|ZP_11270812.1| transcription factor [Halococcus hamelinensis 100A6]
gi|448721517|ref|ZP_21704062.1| transcription factor [Halococcus hamelinensis 100A6]
gi|445791336|gb|EMA41977.1| transcription factor [Halococcus hamelinensis 100A6]
Length = 192
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G ++DL+ + +++P++F +I RI EP TALIF SGK+VCTG
Sbjct: 15 EIQNVVASSAIGQEIDLEALVTDLEGVDFDPEQFPGLIYRIEEPHATALIFRSGKLVCTG 74
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S + A + LG +QN+V S D+ + L + + G +
Sbjct: 75 ADSVDGVHEALASTFETLSNLGLRVNDNPTITVQNIVVSGDLGATLNLNAIAIGLGLEAI 134
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P++V L+F SGK V+T
Sbjct: 135 EYEPEQFPGLVYRLEEPKVVALLFGSGKTVIT 166
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV + +LG L+L IA L EY P++F ++ R+ EP+ AL+F SGK V T
Sbjct: 107 VQNIVVSGDLGATLNLNAIAIGLGLEAIEYEPEQFPGLVYRLEEPKVVALLFGSGKTVIT 166
Query: 80 GAKSEEDSRLAAR 92
G K ED+ A
Sbjct: 167 GCKQFEDAEEATE 179
>gi|340345517|ref|ZP_08668649.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520658|gb|EGP94381.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL +I + EY+P++F ++ R++ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVEQKIDLNEITEKFPDTEYHPEQFPGLVFRLQNPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKL--GFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSE+ +A + ++QKL G D +QN+V + ++ I LE T +
Sbjct: 70 KSED---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK
Sbjct: 95 NDAVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGK 154
Query: 76 MVCTGAKSEED 86
+VCTGAK E D
Sbjct: 155 LVCTGAKKESD 165
>gi|73668140|ref|YP_304155.1| transcription factor [Methanosarcina barkeri str. Fusaro]
gi|72395302|gb|AAZ69575.1| TATA binding protein of transcription factor TFIID [Methanosarcina
barkeri str. Fusaro]
Length = 183
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M S +++N+V++ L + DL I AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MSESSIKIENVVASTKLAEEFDLTVIESKFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTGAK+ D A+ + +G + +QN+V S D+ + L + +
Sbjct: 61 KVVCTGAKNVADVHTVIGNMAKKLNSIGITTIENPQITVQNIVASADLHTILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE FPGL+YR+ P++V+LIF SGK+V+T
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGKLVVT 158
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV++ +L L+L IA L N EY P++F ++ RI +P+ LIFSSGK
Sbjct: 95 PQITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDDPKVVVLIFSSGK 154
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+V TG K+ ED + + +G
Sbjct: 155 LVVTGGKTPEDCERGVEVVRQQLDNMGL 182
>gi|21228286|ref|NP_634208.1| transcription factor [Methanosarcina mazei Go1]
gi|24638250|sp|Q8PUZ4.1|TBP3_METMA RecName: Full=TATA-box-binding protein 3; AltName: Full=Box
A-binding protein 3; Short=BAP 3; AltName: Full=TATA
sequence-binding protein 3; Short=TBP 3; AltName:
Full=TATA-box factor 3
gi|20906746|gb|AAM31880.1| TATA-box binding protein [Methanosarcina mazei Go1]
Length = 185
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHA-RNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
S ++N+V++ L DL+K+ AEYN +F ++ RI P+ LIF+SGK+
Sbjct: 3 STITIENVVASTRLAEDFDLEKMMESGLEGAEYNKVKFPGLVYRINNPKAAFLIFTSGKV 62
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFL--DFKIQNMVGSCDVKFPIRLEGLVLTH 134
VCTG+KS ++ A A ++ + L D ++QN+V S D+K + L + +
Sbjct: 63 VCTGSKSIGNAHAAIINLANTLKSICCEKIDLEPDVRVQNIVASADLKTNLNLNTIAIAF 122
Query: 135 G-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
G + YEPE+FPGLIYR+ P++V+L+F SGK+V+T
Sbjct: 123 GLENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVIT 159
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALH--ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV++ +L L+L IA+ N EY P+ F +I R+ P+ L+FSSGK+V
Sbjct: 99 RVQNIVASADLKTNLNLNTIAIAFGLENVEYEPEVFPGLIYRVEAPKVVVLVFSSGKLVI 158
Query: 79 TGAKSEEDSRLAARKYARIIQKLGF 103
TG K ED R LG
Sbjct: 159 TGGKCPEDCEEGLRIVKTEFDNLGL 183
>gi|448302509|ref|ZP_21492488.1| transcription factor [Natronorubrum tibetense GA33]
gi|445581175|gb|ELY35537.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +G +L+L + + +Y+P F +I R+++P+ T L+F +GK+VCTG
Sbjct: 9 EIQNVVASTGVGQELELDALGQDLDDVQYDPDHFPGLIYRLQDPKATVLLFRTGKIVCTG 68
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHG-QFS 138
A S + + A + ++ LG A + +QN+V + D+ + L + + G +
Sbjct: 69 ATSVHNVQTALQDVFDTLRSLGIEAPADREITVQNIVSNADLDRQLNLNAIAIGLGLENV 128
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P V+L+F SGK+++T
Sbjct: 129 EYEPEQFPGLLYRLDEPEAVVLLFTSGKLLIT 160
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS +L +L+L IA L N EY P++F ++ R+ EP L+F+SGK++ T
Sbjct: 101 VQNIVSNADLDRQLNLNAIAIGLGLENVEYEPEQFPGLLYRLDEPEAVVLLFTSGKLLIT 160
Query: 80 GAKSEE 85
G K+ E
Sbjct: 161 GVKTRE 166
>gi|359417767|ref|ZP_09209836.1| transcription factor [Candidatus Haloredivivus sp. G17]
gi|358031860|gb|EHK00695.1| transcription factor [Candidatus Haloredivivus sp. G17]
Length = 182
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 8/154 (5%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V++ +L L +IA++ N EY P++F ++ R+ P+ AL+F SGK+VCTG
Sbjct: 8 EIQNVVASATFNQRLPLDRIAIYLENTEYEPEQFPGLVYRLENPKAAALLFGSGKVVCTG 67
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFK----IQNMVGSCDVKFPIRLEGLVLTHGQ 136
KS E ++ A K II +L +D K +QN+V S ++ + L +
Sbjct: 68 TKSPEQAKEATHK---IIDELREADVEIDTKPDVTVQNIVASSQLEGTLNLNRIAFELVG 124
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGL+YR+ +P++V L+F SG +V T
Sbjct: 125 -TEYEPEQFPGLVYRLDEPQVVFLLFSSGNLVCT 157
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIV++ L L+L +IA EY P++F ++ R+ EP+ L+FSSG +VCTG
Sbjct: 100 VQNIVASSQLEGTLNLNRIAFELVGTEYEPEQFPGLVYRLDEPQVVFLLFSSGNLVCTGG 159
Query: 82 KSEEDSRLAARKYARIIQKLG 102
++ ED + K ++++G
Sbjct: 160 RTYEDVKEGIAKLEENLKEIG 180
>gi|386874579|ref|ZP_10116817.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807612|gb|EIJ66993.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 186
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + +LDL I EY+P++F + R++ P+T L+F SGKMVCTGAKS
Sbjct: 12 NVVASATINQRLDLVDITKKFPAVEYHPEQFPGAVFRLKSPKTATLLFGSGKMVCTGAKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDF-KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E + A +K +++K K IQN+V S ++ + LE T + S YEP
Sbjct: 72 QELAETAVKKVVELLRKGKVKIKSEPIVTIQNIVSSINLGGKVSLEQAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVV 168
E FPGLI+RM+ P+ V+LIF SGK+V
Sbjct: 131 EQFPGLIHRMLDPKTVILIFSSGKLV 156
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIVS++NLG K+ L++ A + Y P++F +I R+ +P+T LIFSSGK+VC GA
Sbjct: 101 IQNIVSSINLGGKVSLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCVGA 160
Query: 82 KSEEDSRLAARKYARIIQK 100
K E+D + + ++++
Sbjct: 161 KLEKDVHRSVNQIHSLLEE 179
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y PE FPG ++R+ P+ L+F SGK+V T
Sbjct: 36 EYHPEQFPGAVFRLKSPKTATLLFGSGKMVCT 67
>gi|374628350|ref|ZP_09700735.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
gi|373906463|gb|EHQ34567.1| TATA binding protein of transcription factor TFIID [Methanoplanus
limicola DSM 2279]
Length = 184
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 95/152 (62%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + ++DL+ I+ + N E N KRF ++RI P+ AL+FSSGK+V TG
Sbjct: 10 KIENIVASGEIAKEMDLQSISENIDNCELNTKRFPGAVLRITVPKIAALLFSSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT-HGQFS 138
++ ED + +++ G + K+ N+V S D+ P+ L +V+T + +
Sbjct: 70 IRNNEDLEKGLDIIIKSLKENGVDTFDVPNVKVTNIVCSYDMGKPVNLNRIVVTLNLENI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P+IV LIF SGK++LT
Sbjct: 130 EYEPEQFPGLVYRIEEPKIVALIFSSGKIILT 161
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 21 QLQNIVSTVNLGCKLDLKKI--ALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++ NIV + ++G ++L +I L+ N EY P++F ++ RI EP+ ALIFSSGK++
Sbjct: 101 KVTNIVCSYDMGKPVNLNRIVVTLNLENIEYEPEQFPGLVYRIEEPKIVALIFSSGKIIL 160
Query: 79 TGAKSEED 86
TG K+ ED
Sbjct: 161 TGGKNMED 168
>gi|386874609|ref|ZP_10116844.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
gi|386807582|gb|EIJ66966.1| transcription factor [Candidatus Nitrosopumilus salaria BD31]
Length = 187
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ K+DL I + EY+P++F ++ R+ PRT LIF +GKMVCTGA
Sbjct: 10 VENVVASASVDQKIDLITITEKFPDTEYHPEQFPGLVFRLTNPRTATLIFRTGKMVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKL--GFPAKFLD--FKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
KSEE +A + ++QKL G D +QN+V + ++ I LE T +
Sbjct: 70 KSEE---MAIKAVNTVVQKLRKGKIKIKNDAVITVQNIVAAINLGGKIHLEKAARTLPR- 125
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
S YEPE FPGLI+RM+ P+ V+L+F SGK+V T
Sbjct: 126 SMYEPEQFPGLIHRMLDPKTVILLFASGKLVCT 158
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
+V +QNIV+ +NLG K+ L+K A + Y P++F +I R+ +P+T L+F+SGK
Sbjct: 95 NDAVITVQNIVAAINLGGKIHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILLFASGK 154
Query: 76 MVCTGAKSEED 86
+VCTGAK E D
Sbjct: 155 LVCTGAKKESD 165
>gi|407465173|ref|YP_006776055.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048361|gb|AFS83113.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 186
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + KLDL I EY+P++F + R++ P+T L+F SGKMVCTGAKS
Sbjct: 12 NVVASATIEQKLDLVDITKKFPAVEYHPEQFPGAVFRLKNPKTATLLFGSGKMVCTGAKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPAKFLDF-KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E + A + +I++K K IQN+V S ++ + LE T + S YEP
Sbjct: 72 QELAETAVFEVVKILRKGKIKIKNDPIVSIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVV 168
E FPGLI+RM+ P+ V+LIF SGK+V
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLV 156
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIVS++NLG K++L++ A + Y P++F +I R+ +P+T LIF+SGK+VC GA
Sbjct: 101 IQNIVSSINLGGKVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGA 160
Query: 82 KSEEDSRLAARKYARIIQKLGF 103
K E+D + + ++++ G
Sbjct: 161 KLEKDVHRSVNQIHALLEEKGL 182
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y PE FPG ++R+ P+ L+F SGK+V T
Sbjct: 36 EYHPEQFPGAVFRLKNPKTATLLFGSGKMVCT 67
>gi|448301779|ref|ZP_21491769.1| transcription factor [Natronorubrum tibetense GA33]
gi|445583403|gb|ELY37734.1| transcription factor [Natronorubrum tibetense GA33]
Length = 186
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +LDL+ +A+ A+Y+P+ F ++ R + P++ ALIF SGK+VCTGA
Sbjct: 10 IENVVASTGIGQELDLQSVAMDLEGADYDPENFPGLVYRTQNPKSAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHG-QFSS 139
S E + +++L + + +QN+V S D+ + L + + G +
Sbjct: 70 NSTEAVHGSLNVVFDKLRELQIQVEEDPEIIVQNIVSSADLGRNLNLNAIAIGLGLENIE 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 YEPEQFPGLVYRIDEPEVVALLFGSGKLVVT 160
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L N EY P++F ++ RI EP AL+F SGK+V T
Sbjct: 101 VQNIVSSADLGRNLNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPEVVALLFGSGKLVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K ED++ A + ++ LG
Sbjct: 161 GGKQIEDAKQAVDVIVKRLEDLGL 184
>gi|407462989|ref|YP_006774306.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046611|gb|AFS81364.1| TATA-box binding family protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 192
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V++ + KLDL I + EY+P++F + R++EP+T L+F SG MVCTGAKS
Sbjct: 12 NVVASATIEQKLDLVDITKKFPHVEYHPEQFPGAVFRLQEPKTATLLFGSGNMVCTGAKS 71
Query: 84 EEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
EE + A R ++K K IQN+V S ++ + LE T + S YEP
Sbjct: 72 EEMAIQAVNTVVRKLRKGRIKIKKEPKVTIQNIVSSINLGGKVNLEQAARTLPR-SMYEP 130
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVV 168
E FPGLI+RM+ P+ V+LIF SGK+V
Sbjct: 131 EQFPGLIHRMLDPKTVILIFASGKLV 156
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIVS++NLG K++L++ A + Y P++F +I R+ +P+T LIF+SGK+VC GA
Sbjct: 101 IQNIVSSINLGGKVNLEQAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFASGKLVCVGA 160
Query: 82 KSEED 86
K E++
Sbjct: 161 KLEKE 165
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
Y PE FPG ++R+ +P+ L+F SG +V T
Sbjct: 36 EYHPEQFPGAVFRLQEPKTATLLFGSGNMVCT 67
>gi|340344679|ref|ZP_08667811.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519820|gb|EGP93543.1| TATA-box binding protein [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 187
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 8/141 (5%)
Query: 34 KLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARK 93
K+DL I + EYNP +F ++ R++ P+T LIF +GKMVCTG KSEE +A +
Sbjct: 22 KIDLNDITKKFPDTEYNPDQFPGLVFRLQNPKTATLIFRTGKMVCTGGKSEE---MAIKA 78
Query: 94 YARIIQKL---GFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLI 149
++QKL G K + +QN+V S ++ + LE T + S YEPE FPGLI
Sbjct: 79 VNTVVQKLRKGGIKVKKDAEITVQNIVASINLGGKVHLEKAARTLPR-SMYEPEQFPGLI 137
Query: 150 YRMVKPRIVLLIFVSGKVVLT 170
+RM+ P+ V+LIF SGK+V T
Sbjct: 138 HRMLDPKTVILIFSSGKLVCT 158
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
+QNIV+++NLG K+ L+K A + Y P++F +I R+ +P+T LIFSSGK+VCTGA
Sbjct: 101 VQNIVASINLGGKVHLEKAARTLPRSMYEPEQFPGLIHRMLDPKTVILIFSSGKLVCTGA 160
Query: 82 KSEED 86
K+E D
Sbjct: 161 KNESD 165
>gi|307353232|ref|YP_003894283.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
gi|307156465|gb|ADN35845.1| TATA-box binding family protein [Methanoplanus petrolearius DSM
11571]
Length = 184
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + +DL+ IA N E N K+F + RI P+ L+FSSGK+V TG
Sbjct: 10 KIENIVASGVIADSIDLEDIAEKIENCELNKKKFPGAVFRIENPKVAVLVFSSGKIVMTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT-HGQFS 138
+ EED +L + ++ G D I NMV S D + I L +V+ + +
Sbjct: 70 IRREEDLKLGLDYLMKELKAAGVSTFDVPDVAITNMVCSYDTEKQINLNRIVVALNLENI 129
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P+IV L+F SGKV+LT
Sbjct: 130 EYEPEQFPGLVYRLDDPKIVALLFSSGKVILT 161
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 26 VSTVNLGCKLDLKK--------IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
V+ N+ C D +K +AL+ N EY P++F ++ R+ +P+ AL+FSSGK++
Sbjct: 100 VAITNMVCSYDTEKQINLNRIVVALNLENIEYEPEQFPGLVYRLDDPKIVALLFSSGKVI 159
Query: 78 CTGAKSEEDSRLAARKYARIIQKL 101
TG ++ +D R K + ++ +
Sbjct: 160 LTGGRNLDDVRAGLDKLEKQLESI 183
>gi|240102886|ref|YP_002959195.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
gi|239910440|gb|ACS33331.1| TATA box-binding protein, transcription initiation factor TFIID
(tbp) [Thermococcus gammatolerans EJ3]
Length = 182
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
MG +++N+V++++L ++D++K+A + +YNP F + ++ T LIF SG
Sbjct: 1 MGKMSLKVENVVASIDLHGEIDVEKVASKLDSVQYNPSVFPGAVYKMESFGVTFLIFYSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKF-PIRLEGLVL 132
K+VCTGAKS E R A K R ++ +G K + ++QN+V + D+ F + L+ + L
Sbjct: 61 KLVCTGAKSVETIRKATEKLKRTLESMGMKFKGEPEIQVQNIVAAGDLGFGTLDLDIVAL 120
Query: 133 THGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
T YEPE+FPG++YR+ R+ +LIF SGKVV++
Sbjct: 121 TLPNV-EYEPEIFPGVVYRVRNSRMTILIFNSGKVVVS 157
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 21 QLQNIVSTVNLG-CKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
Q+QNIV+ +LG LDL +AL N EY P+ F V+ R+R R T LIF+SGK+V +
Sbjct: 98 QVQNIVAAGDLGFGTLDLDIVALTLPNVEYEPEIFPGVVYRVRNSRMTILIFNSGKVVVS 157
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
GA++EED R A + R +K G
Sbjct: 158 GARTEEDIRRAVEELTRDFEKYGL 181
>gi|219851515|ref|YP_002465947.1| transcription factor [Methanosphaerula palustris E1-9c]
gi|219545774|gb|ACL16224.1| TATA-box binding family protein [Methanosphaerula palustris E1-9c]
Length = 183
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P+++NIV++ ++ +DL+ ++ N + N KRF + R+++P+ LIFSSGK+V T
Sbjct: 9 PKIENIVASGSIADSIDLEMLSAKLENCDLNTKRFPGAVFRLQKPKIAVLIFSSGKVVIT 68
Query: 80 GAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLT-HGQF 137
GA+S ED + ++ G D + NMV S D+ I L +V+T + +
Sbjct: 69 GARSHEDLLQGQEILIQTMKDAGVICHDTPDVAVTNMVCSYDLGKYINLNKVVITLNLEN 128
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P+IV L+F SGK++LT
Sbjct: 129 IEYEPEQFPGLVYRISDPKIVALLFSSGKIILT 161
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 24 NIVSTVNLGCKLDLKK--IALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
N+V + +LG ++L K I L+ N EY P++F ++ RI +P+ AL+FSSGK++ TG
Sbjct: 104 NMVCSYDLGKYINLNKVVITLNLENIEYEPEQFPGLVYRISDPKIVALLFSSGKIILTGG 163
Query: 82 KSEEDSRLAARKYARIIQKLG 102
K+ E+ R A + Q LG
Sbjct: 164 KTMEN---IERGVAFLEQMLG 181
>gi|357479029|ref|XP_003609800.1| TATA-box binding protein [Medicago truncatula]
gi|355510855|gb|AES91997.1| TATA-box binding protein [Medicago truncatula]
Length = 162
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 76/116 (65%), Gaps = 25/116 (21%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPK---------------------RFAAVIMR 60
+QN+VSTVN CKLDL+ IAL +R+A Y PK F +IM+
Sbjct: 31 VQNLVSTVNWMCKLDLEAIALQSRSAVYKPKASFICSFIVNLIQIPSVLCMQHFPFLIMK 90
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMV 116
IR+P+ TALI+SSGKM+CTG +E+ S+LAARKY RIIQK GFP K FK+Q+++
Sbjct: 91 IRKPKATALIYSSGKMICTGG-NEKQSKLAARKYTRIIQKCGFPVK---FKVQHLL 142
>gi|448316221|ref|ZP_21505845.1| transcription factor [Natronococcus jeotgali DSM 18795]
gi|445609220|gb|ELY63027.1| transcription factor [Natronococcus jeotgali DSM 18795]
Length = 186
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ +G +L L+ +A+ A+Y+P++F ++ R +P+ ALIF SGK+VCTGA
Sbjct: 10 IENVVASSGIGQELALESLAMDLPGADYDPEQFPGLVYRTTDPKAAALIFRSGKIVCTGA 69
Query: 82 KSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQFS-S 139
KS E + + R ++ L + + +QN+V S D+ + L + + G S
Sbjct: 70 KSIEGVQESMRIVFEKLRDLQIEVEADPEIVVQNIVSSADLGRSLNLNAIAIGLGLESIE 129
Query: 140 YEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ +P +V L+F SGK+V+T
Sbjct: 130 YEPEQFPGLVYRLDEPDVVTLLFGSGKLVVT 160
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIVS+ +LG L+L IA L + EY P++F ++ R+ EP L+F SGK+V T
Sbjct: 101 VQNIVSSADLGRSLNLNAIAIGLGLESIEYEPEQFPGLVYRLDEPDVVTLLFGSGKLVVT 160
Query: 80 GAKSEEDSRLAARKYARIIQKLGF 103
G K +D+R A ++ LG
Sbjct: 161 GGKDVDDARHAIDVIVERLEDLGL 184
>gi|21227129|ref|NP_633051.1| transcription factor [Methanosarcina mazei Go1]
gi|452209605|ref|YP_007489719.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
gi|24638252|sp|Q8PY37.1|TBP1_METMA RecName: Full=TATA-box-binding protein 1; AltName: Full=Box
A-binding protein 1; Short=BAP 1; AltName: Full=TATA
sequence-binding protein 1; Short=TBP 1; AltName:
Full=TATA-box factor 1
gi|20905460|gb|AAM30723.1| Transcription initiation factor TFIIB [Methanosarcina mazei Go1]
gi|452099507|gb|AGF96447.1| TATA-box binding protein [Methanosarcina mazei Tuc01]
Length = 183
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M S +++N+V++ L + DL I AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MSESSIKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTG K+ D A+ + +G + +QN+V S D+ + L + +
Sbjct: 61 KVVCTGTKNVADVHTVVGNLAKKLNSIGIKTIENPQITVQNIVASADLHTILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
G + YEPE FPGL+YR+ +P++V+LIF SGK+V+
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVV 157
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK
Sbjct: 95 PQITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGK 154
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+V G KS ED + + + +G
Sbjct: 155 LVVAGGKSPEDCERSVEVVRQQLDSMGL 182
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
KI+N+V S + L ++ + + + Y + FPGL+YR+ P+ L+F SGKVV
Sbjct: 6 IKIENVVASTKLAEEFDLT-VIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVC 64
Query: 170 T 170
T
Sbjct: 65 T 65
>gi|14586424|emb|CAC42920.1| TATA-binding protein [Methanosarcina mazei]
Length = 183
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 74
M S +++N+V++ L + DL I AEYN ++F ++ R+ +P+ L+F+SG
Sbjct: 1 MSESSIKIENVVASTKLAEEFDLTVIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSG 60
Query: 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
K+VCTG K+ D A+ + +G + +QN+V S D+ + L + +
Sbjct: 61 KVVCTGTKNVADVHTVVGNLAKKLNSIGIKTIEDPQITVQNIVASADLHTILNLNAIAIG 120
Query: 134 HG-QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
G + YEPE FPGL+YR+ +P++V+LIF SGK+V+
Sbjct: 121 LGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGKLVV 157
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIA--LHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
PQ+ QNIV++ +L L+L IA L N EY P++F ++ RI EP+ LIFSSGK
Sbjct: 95 PQITVQNIVASADLHTILNLNAIAIGLGLENIEYEPEQFPGLVYRIDEPKVVVLIFSSGK 154
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103
+V G KS ED + + + +G
Sbjct: 155 LVVAGGKSPEDCERSVEVVRQQLDSMGL 182
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 110 FKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVL 169
KI+N+V S + L ++ + + + Y + FPGL+YR+ P+ L+F SGKVV
Sbjct: 6 IKIENVVASTKLAEEFDLT-VIESEFEGAEYNKQKFPGLVYRVSDPKAAFLVFTSGKVVC 64
Query: 170 T 170
T
Sbjct: 65 T 65
>gi|124485272|ref|YP_001029888.1| transcription factor [Methanocorpusculum labreanum Z]
gi|124362813|gb|ABN06621.1| TATA binding protein of transcription factor TFIID
[Methanocorpusculum labreanum Z]
Length = 189
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+++NIV++ + LDL +A AEYN +RF V++R++ P+ AL+F SGK+V TG
Sbjct: 10 KIENIVASTKVNDSLDLVALAAQIPGAEYNKQRFPGVVLRMQNPKIAALVFGSGKVVLTG 69
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHG-Q 136
AKS E+ ++++L LD + +QN+V S D+ I L + ++
Sbjct: 70 AKSLENLTKGLEYLVALLKELKI--NILDNPTYTVQNIVTSADLGSRINLNKIAMSFNLD 127
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+L+F SGK+++T
Sbjct: 128 KIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIIT 161
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 22 LQNIVSTVNLGCKLDLKKIAL--HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
+QNIV++ +LG +++L KIA+ + EY P++F ++ R+ +P+ L+F SGK++ T
Sbjct: 102 VQNIVTSADLGSRINLNKIAMSFNLDKIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLIIT 161
Query: 80 GAKSEEDSRLAARK 93
G K D++ A +K
Sbjct: 162 GGKKTADAKKAVKK 175
>gi|440300791|gb|ELP93238.1| TATA-box-binding protein, putative [Entamoeba invadens IP1]
Length = 201
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%), Gaps = 22/152 (14%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
P++ N+VST L +LDL++I A I ++TALI +GK+VCT
Sbjct: 41 PEIANVVSTFQLNQQLDLRQIVKSA----------------ISSLKSTALILKTGKIVCT 84
Query: 80 GAKSEEDSRLAARKYARIIQKLGF-PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
G +S E+S++AA+ I+K+G+ +F +F + + SCD+KF I L L ++
Sbjct: 85 GTRSIEESKIAAK----TIKKIGYNEVRFSNFNVH-TIRSCDIKFQISLRPLYDSNTDMC 139
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE+FP L++R +P++ LL+F +GKVVLT
Sbjct: 140 QYEPEVFPVLVFRTTQPKVTLLVFSTGKVVLT 171
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 47 AEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARII 98
+Y P+ F ++ R +P+ T L+FS+GK+V TGAK +E+ A K I+
Sbjct: 139 CQYEPEVFPVLVFRTTQPKVTLLVFSTGKVVLTGAKDDENLNTAYTKICPIL 190
>gi|167043299|gb|ABZ08004.1| putative transcription factor TFIID (or TATA-binding protein, TBP)
[uncultured marine crenarchaeote HF4000_ANIW141M18]
Length = 186
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 6/152 (3%)
Query: 22 LQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
++N+V++ ++ +DLK + E++P +F ++ R++ P+T LIF SGKMVCTG
Sbjct: 10 IENVVASASVDQAIDLKDVTKKFPETEWHPDQFPGLVFRLKSPKTATLIFRSGKMVCTGG 69
Query: 82 KSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLV--LTHGQFS 138
KSE + A R + ++K K +QN+V S + I LE L H S
Sbjct: 70 KSEAMAIKAVRTVVKQLRKGKIKIKKDAVITVQNIVASGSLGGKIHLEDAARRLPH---S 126
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGLI+RMV P+ VLL+F SGK+V T
Sbjct: 127 MYEPEQFPGLIHRMVDPKTVLLLFASGKLVCT 158
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V +QNIV++ +LG K+ L+ A ++ Y P++F +I R+ +P+T L+F+SGK+V
Sbjct: 97 AVITVQNIVASGSLGGKIHLEDAARRLPHSMYEPEQFPGLIHRMVDPKTVLLLFASGKLV 156
Query: 78 CTGAKSEED 86
CTGAK E D
Sbjct: 157 CTGAKKESD 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,664,002,638
Number of Sequences: 23463169
Number of extensions: 97714409
Number of successful extensions: 219881
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 215614
Number of HSP's gapped (non-prelim): 2484
length of query: 172
length of database: 8,064,228,071
effective HSP length: 132
effective length of query: 40
effective length of database: 9,262,057,059
effective search space: 370482282360
effective search space used: 370482282360
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 71 (32.0 bits)