BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17242
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 185
Score = 303 bits (775), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 150/157 (95%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
M G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSS
Sbjct: 3 HMSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 62
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMVCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT
Sbjct: 63 GKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 122
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H QFSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 123 HQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 100 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Query: 80 GAK 82
GAK
Sbjct: 160 GAK 162
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 301 bits (771), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 150/154 (97%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE+SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 62 VCTGAKSEENSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 96 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Query: 80 GAK 82
GAK
Sbjct: 156 GAK 158
>pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX
Length = 181
Score = 301 bits (770), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 2 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 62 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 96 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 155
Query: 80 GAK 82
GAK
Sbjct: 156 GAK 158
>pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX
Length = 185
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 6 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 65
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 66 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 125
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 126 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 100 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 159
Query: 80 GAK 82
GAK
Sbjct: 160 GAK 162
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|F Chain F, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|J Chain J, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|N Chain N, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
pdb|1C9B|R Chain R, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
Length = 180
Score = 300 bits (768), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/154 (94%), Positives = 149/154 (96%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VPQLQNIVSTVNLGCKLDLK IAL ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM
Sbjct: 3 GIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 62
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
VCTGAKSEE SRLAARKYAR++QKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTH Q
Sbjct: 63 VCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQ 122
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM+KPRIVLLIFVSGKVVLT
Sbjct: 123 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 156
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QN+V + ++ + L+ + L H + + Y P+ F +I R+ +PR LIF SGK+V T
Sbjct: 97 KIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLT 156
Query: 80 GAK 82
GAK
Sbjct: 157 GAK 159
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
Length = 240
Score = 280 bits (716), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 156 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Query: 80 GAKSEED 86
GAK E+
Sbjct: 216 GAKQREE 222
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
pdb|1TBP|B Chain B, Crystal Structure Of Yeast Tata-Binding Protein And Model
For Interaction With Dna
Length = 180
Score = 278 bits (712), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 62 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 122 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 96 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Query: 80 GAKSEED 86
GAK E+
Sbjct: 156 GAKQREE 162
>pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex
pdb|1YTB|B Chain B, Crystal Structure Of A Yeast TbpTATA-Box Complex
pdb|1YTF|A Chain A, Yeast TfiiaTBPDNA COMPLEX
pdb|1TBA|B Chain B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
pdb|1NGM|A Chain A, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|E Chain E, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|I Chain I, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NGM|M Chain M, Crystal Structure Of A Yeast Brf1-Tbp-Dna Ternary Complex
pdb|1NH2|A Chain A, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 180
Score = 278 bits (712), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 131/154 (85%), Positives = 144/154 (93%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
V TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 62 VVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGT 121
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 122 FSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 96 KIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Query: 80 GAKSEED 86
GAK E+
Sbjct: 156 GAKQREE 162
>pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
pdb|1VTL|F Chain F, Co-Crystal Structure Of Tbp Recognizing The Minor Groove
Of A Tata Element
Length = 186
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 141/155 (90%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 7 SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 66
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 67 MVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHA 126
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 127 AFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 161
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 102 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 161
Query: 80 GAKSEEDS 87
GAK +++
Sbjct: 162 GAKMRDET 169
>pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
pdb|1VTO|B Chain B, 1.9 A Resolution Refined Structure Of Tbp Recognizing The
Minor Groove Of Tataaaag
Length = 190
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 141/155 (90%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 9 SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 68
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 69 MVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHA 128
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 129 AFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 163
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 104 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 163
Query: 80 GAKSEEDS 87
GAK +++
Sbjct: 164 GAKMRDET 171
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer)
pdb|1VOK|B Chain B, Arabidopsis Thaliana Tbp (Dimer)
pdb|1VOL|B Chain B, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT
Ternary Complex
pdb|1QN5|A Chain A, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN5|B Chain B, Crystal Structure Of The G(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN6|A Chain A, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN6|B Chain B, Crystal Structure Of The T(-26) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|A Chain A, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN7|B Chain B, Crystal Structure Of The T(-27) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN8|A Chain A, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN8|B Chain B, Crystal Structure Of The T(-28) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|A Chain A, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN9|B Chain B, Crystal Structure Of The C(-29) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|A Chain A, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNA|B Chain B, Crystal Structure Of The T(-30) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|A Chain A, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNB|B Chain B, Crystal Structure Of The T(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|A Chain A, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNC|B Chain B, Crystal Structure Of The A(-31) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QNE|A Chain A, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1QNE|B Chain B, Crystal Structure Of The Adenovirus Major Late Promoter
Tata Box Bound To Wild-Type Tbp (Arabidopsis Thaliana
Tbp Isoform 2).
pdb|1QN3|A Chain A, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN3|B Chain B, Crystal Structure Of The C(-25) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|A Chain A, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution.
pdb|1QN4|B Chain B, Crystal Structure Of The T(-24) Adenovirus Major Late
Promoter Tata Box Variant Bound To Wild-Type Tbp
(Arabidopsis Thaliana Tbp Isoform 2). Tata Element
Recognition By The Tata Box-Binding Protein Has Been
Conserved Throughout Evolution
Length = 200
Score = 271 bits (693), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/155 (83%), Positives = 141/155 (90%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 19 SGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK 78
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MVCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKIQN+VGSCDVKFPIRLEGL +H
Sbjct: 79 MVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHA 138
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 139 AFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V T
Sbjct: 114 KIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 173
Query: 80 GAKSEEDS 87
GAK +++
Sbjct: 174 GAKMRDET 181
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|D Chain D, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OCI|A Chain A, Crystal Structure Of Tbp (Tata Box Binding Protein)
pdb|3OCI|B Chain B, Crystal Structure Of Tbp (Tata Box Binding Protein)
Length = 218
Score = 253 bits (647), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEED 86
GAK +D
Sbjct: 194 GAKVRDD 200
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein
pdb|3EIK|B Chain B, Double Stranded Dna Binding Protein
Length = 218
Score = 253 bits (647), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEED 86
GAK +D
Sbjct: 194 GAKVRDD 200
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp
pdb|2Z8U|B Chain B, Methanococcus Jannaschii Tbp
pdb|2Z8U|P Chain P, Methanococcus Jannaschii Tbp
pdb|2Z8U|Q Chain Q, Methanococcus Jannaschii Tbp
Length = 188
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CTGAKS
Sbjct: 17 NVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKS 76
Query: 84 EEDSRLAARKYARIIQKLGFPA-KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEP 142
+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + + YEP
Sbjct: 77 KEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEP 135
Query: 143 ELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
E FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 136 EQFPGLVYRLDDPKVVVLIFGSGKVVIT 163
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 105 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 164
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 165 LKSEEDAKRALKKILDTIKEV 185
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
Length = 198
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
+V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 11 AVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 70
Query: 78 CTGAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQ 136
TGAKS ++ A ++ + ++K G +IQN+V S ++ + L+ +
Sbjct: 71 VTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-E 129
Query: 137 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM +PR+VLLIF SGK+V+T
Sbjct: 130 NNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 163
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 105 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 164
Query: 81 AKSEEDSRLAARK 93
AK E++ A +K
Sbjct: 165 AKREDEVHKAVKK 177
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQK 100
C+GAKSE D+ A RK R + K
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDK 180
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQK 100
C+GAKSE D+ A RK R + K
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDK 180
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein
pdb|1PCZ|B Chain B, Structure Of Tata-Binding Protein
Length = 191
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTLPN-CEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 20 PQL--QNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 77
PQ+ QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+V
Sbjct: 98 PQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 157
Query: 78 CTGAKSEEDSRLAARKYARIIQKLG 102
C+GAKSE D+ A RK R + K G
Sbjct: 158 CSGAKSEADAWEAVRKLLRELDKYG 182
>pdb|3TGV|A Chain A, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|B Chain B, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|C Chain C, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
pdb|3TGV|D Chain D, Crystal Structure Of Hutz,The Heme Storsge Protein From
Vibrio Cholerae
Length = 148
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 37 LKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS--EEDSRLAAR-- 92
+ IA HARN E NP+ IM I + +F+ ++ S E DS L +
Sbjct: 46 ISHIARHARNLEVNPQ---VSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVI 102
Query: 93 -----KYARIIQKLGFPAKFLDFKIQ 113
++ II L F+ F++Q
Sbjct: 103 AQMGERFGEIIDGLSQLQDFMLFRLQ 128
>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori
L-Asparaginase At 1.4 A Resolution
pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori
L- Asparaginase At 1.8 A Resolution
Length = 332
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 66 TTALIFSSGKMVCTGAK----SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDV 121
T AL+ + G + +G S + L ++ + I L A+ ++ N +GS D+
Sbjct: 7 TIALLATGGTIAGSGVDASLGSYKSGELGVKELLKAIPSLNKIARIQGEQVSN-IGSQDM 65
Query: 122 KFPI---------------RLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVL 159
I R++G+V+THG + E F L+ KP +++
Sbjct: 66 NEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLHSTKPVVLV 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,333,609
Number of Sequences: 62578
Number of extensions: 151922
Number of successful extensions: 411
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 41
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)