Query psy17242
Match_columns 172
No_of_seqs 149 out of 507
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:58:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytb_A Protein (tata binding p 100.0 2E-66 6.8E-71 416.9 21.4 155 17-171 2-156 (180)
2 3eik_A Tata-box-binding protei 100.0 1.1E-64 3.7E-69 416.5 22.2 157 15-171 38-194 (218)
3 1rm1_A Tata-box binding protei 100.0 6.2E-64 2.1E-68 417.5 22.3 156 16-171 61-216 (240)
4 1ais_A TBP, protein (tata-bind 100.0 1.8E-62 6.3E-67 394.5 20.9 157 14-171 3-160 (182)
5 2z8u_A Tata-box-binding protei 100.0 2E-62 6.9E-67 396.0 21.1 153 18-171 11-164 (188)
6 1mp9_A Tata-binding protein; t 100.0 4.6E-62 1.6E-66 396.7 22.0 155 16-171 9-164 (198)
7 2z8u_A Tata-box-binding protei 100.0 5.9E-30 2E-34 206.3 12.8 87 17-103 101-187 (188)
8 1rm1_A Tata-box binding protei 100.0 3.8E-30 1.3E-34 214.1 9.4 101 66-171 25-125 (240)
9 1mp9_A Tata-binding protein; t 100.0 1.6E-29 5.6E-34 205.2 12.4 88 17-104 101-188 (198)
10 1ais_A TBP, protein (tata-bind 100.0 2.2E-29 7.4E-34 202.1 11.6 86 16-101 96-181 (182)
11 1ytb_A Protein (tata binding p 99.9 1.3E-26 4.5E-31 185.7 11.1 86 17-102 92-178 (180)
12 3eik_A Tata-box-binding protei 99.9 2.9E-26 9.9E-31 188.3 12.0 84 18-101 131-215 (218)
13 2d0b_A RNAse HIII, ribonucleas 94.5 0.054 1.8E-06 46.0 5.6 36 52-87 27-62 (310)
14 3vn5_A RNAse HIII, ribonucleas 94.4 0.012 4.1E-07 49.0 1.3 38 51-88 25-62 (257)
15 2jvf_A De novo protein M7; tet 71.6 6.9 0.00024 26.7 4.7 24 81-104 56-79 (96)
16 1t00_A Thioredoxin, TRX; redox 71.2 5.4 0.00018 26.4 4.2 29 67-95 80-110 (112)
17 3gnj_A Thioredoxin domain prot 70.8 7.4 0.00025 25.5 4.9 29 67-95 79-109 (111)
18 3tco_A Thioredoxin (TRXA-1); d 70.7 5.1 0.00017 26.1 4.0 29 67-95 78-108 (109)
19 2trx_A Thioredoxin; electron t 70.2 7.4 0.00025 25.4 4.7 29 67-95 77-107 (108)
20 1fb6_A Thioredoxin M; electron 69.9 5.8 0.0002 25.7 4.1 28 67-94 75-104 (105)
21 1dby_A Chloroplast thioredoxin 69.9 7.1 0.00024 25.5 4.6 28 67-94 76-105 (107)
22 2o8v_B Thioredoxin 1; disulfid 68.4 7.8 0.00027 27.0 4.7 29 67-95 97-127 (128)
23 1thx_A Thioredoxin, thioredoxi 67.8 8.8 0.0003 25.2 4.7 29 67-95 82-112 (115)
24 2es7_A Q8ZP25_salty, putative 66.4 7 0.00024 28.4 4.3 29 67-95 94-124 (142)
25 2i4a_A Thioredoxin; acidophIle 65.6 7.8 0.00027 25.1 4.0 27 67-93 77-105 (107)
26 1w4v_A Thioredoxin, mitochondr 65.5 10 0.00034 25.7 4.7 29 67-95 88-118 (119)
27 1kng_A Thiol:disulfide interch 65.4 7.8 0.00027 27.0 4.3 33 66-98 120-154 (156)
28 2opv_A KHSRP protein; KH domai 64.7 9.2 0.00032 25.5 4.3 33 65-99 44-84 (85)
29 2ctf_A Vigilin; K homology typ 64.7 10 0.00035 26.5 4.7 38 54-101 56-93 (102)
30 2e0q_A Thioredoxin; electron t 64.5 12 0.0004 23.9 4.7 29 67-95 72-102 (104)
31 3gix_A Thioredoxin-like protei 64.4 12 0.00043 26.9 5.3 34 67-100 80-125 (149)
32 4euy_A Uncharacterized protein 63.9 5.1 0.00018 26.5 2.9 28 67-94 74-103 (105)
33 1ep7_A Thioredoxin CH1, H-type 62.9 12 0.00041 24.6 4.6 28 67-95 81-110 (112)
34 1v98_A Thioredoxin; oxidoreduc 61.9 12 0.00041 26.0 4.7 29 67-95 107-137 (140)
35 3hz4_A Thioredoxin; NYSGXRC, P 61.4 13 0.00045 26.0 4.9 34 67-100 81-116 (140)
36 3m9j_A Thioredoxin; oxidoreduc 61.1 9.4 0.00032 24.7 3.8 27 67-94 76-104 (105)
37 2yzu_A Thioredoxin; redox prot 60.7 6.6 0.00022 25.5 2.9 28 67-94 75-104 (109)
38 3qfa_C Thioredoxin; protein-pr 60.3 9.7 0.00033 25.8 3.9 27 67-94 87-115 (116)
39 3p2a_A Thioredoxin 2, putative 60.2 11 0.00039 26.5 4.3 29 67-95 112-142 (148)
40 2qgv_A Hydrogenase-1 operon pr 58.2 15 0.0005 27.4 4.7 30 66-95 93-124 (140)
41 2ppt_A Thioredoxin-2; thiredox 58.2 15 0.0005 26.6 4.7 29 67-95 121-151 (155)
42 2voc_A Thioredoxin; electron t 58.0 11 0.00039 25.1 3.9 25 67-91 74-100 (112)
43 2b1k_A Thiol:disulfide interch 57.7 15 0.00051 26.2 4.6 35 66-100 128-164 (168)
44 1syr_A Thioredoxin; SGPP, stru 56.9 7.7 0.00026 25.9 2.8 27 67-94 82-110 (112)
45 3zzx_A Thioredoxin; oxidoreduc 56.6 15 0.0005 25.0 4.3 26 67-93 76-103 (105)
46 2av4_A Thioredoxin-like protei 55.9 16 0.00054 28.0 4.6 35 66-100 97-143 (160)
47 3d22_A TRXH4, thioredoxin H-ty 55.8 18 0.00063 24.9 4.8 29 67-96 102-132 (139)
48 1r26_A Thioredoxin; redox-acti 54.9 20 0.0007 24.8 4.9 28 67-95 93-122 (125)
49 2j23_A Thioredoxin; immune pro 54.7 15 0.0005 25.0 4.0 27 67-94 91-119 (121)
50 2o5a_A BH1328 protein; BHR21, 54.5 18 0.00062 26.5 4.6 30 75-105 37-66 (125)
51 1nsw_A Thioredoxin, TRX; therm 54.4 6.8 0.00023 25.5 2.1 27 67-93 74-102 (105)
52 2id1_A Hypothetical protein; a 52.0 20 0.00068 26.5 4.5 28 76-104 38-65 (130)
53 2kuc_A Putative disulphide-iso 51.9 24 0.00082 23.8 4.8 28 67-94 89-119 (130)
54 2a4v_A Peroxiredoxin DOT5; yea 51.5 24 0.00083 25.0 4.9 35 66-101 120-156 (159)
55 2vlu_A Thioredoxin, thioredoxi 51.3 23 0.00077 23.7 4.5 27 67-94 90-118 (122)
56 1oaz_A Thioredoxin 1; immune s 51.2 11 0.00037 26.1 2.9 27 67-93 92-120 (123)
57 2qsi_A Putative hydrogenase ex 49.4 28 0.00097 25.6 5.1 32 66-97 91-124 (137)
58 2pu9_C TRX-F, thioredoxin F-ty 48.9 27 0.00092 22.9 4.6 27 67-94 81-109 (111)
59 3emx_A Thioredoxin; structural 48.7 20 0.00067 25.0 4.0 29 67-95 95-125 (135)
60 2oe3_A Thioredoxin-3; electron 48.6 14 0.00048 25.0 3.1 25 67-92 86-112 (114)
61 1faa_A Thioredoxin F; electron 48.2 25 0.00085 23.6 4.4 27 67-94 94-122 (124)
62 2l57_A Uncharacterized protein 47.8 28 0.00095 23.4 4.6 28 67-94 85-115 (126)
63 1x4m_A FAR upstream element bi 46.8 14 0.00049 25.1 2.9 35 66-102 46-88 (94)
64 2vim_A Thioredoxin, TRX; thior 46.1 33 0.0011 21.8 4.5 27 67-94 75-103 (104)
65 1xfl_A Thioredoxin H1; AT3G510 45.4 30 0.001 23.7 4.4 27 67-94 94-122 (124)
66 3uvt_A Thioredoxin domain-cont 45.0 26 0.00088 22.7 3.9 27 67-93 81-109 (111)
67 1x5d_A Protein disulfide-isome 44.6 31 0.0011 23.2 4.4 30 67-96 86-117 (133)
68 2xc2_A Thioredoxinn; oxidoredu 44.5 34 0.0012 22.7 4.5 26 67-93 88-115 (117)
69 4f9u_A CG32412; alpha/beta hyd 44.4 22 0.00076 28.9 4.1 34 87-120 31-74 (312)
70 3die_A Thioredoxin, TRX; elect 44.4 17 0.00059 23.3 2.9 27 67-93 76-104 (106)
71 1zzk_A Heterogeneous nuclear r 44.1 31 0.0011 22.6 4.2 27 74-102 52-78 (82)
72 2ctm_A Vigilin; K homology typ 44.0 34 0.0012 23.4 4.5 35 65-101 47-86 (95)
73 4hhu_A OR280; engineered prote 44.0 41 0.0014 25.0 5.1 77 76-160 45-127 (170)
74 1ti3_A Thioredoxin H, PTTRXH1; 43.0 34 0.0012 22.2 4.3 28 67-95 82-111 (113)
75 3it4_B Arginine biosynthesis b 42.8 23 0.00077 28.3 3.8 22 75-96 88-109 (205)
76 3d6i_A Monothiol glutaredoxin- 42.6 41 0.0014 21.9 4.7 28 67-95 79-108 (112)
77 2in3_A Hypothetical protein; D 42.6 29 0.00099 25.9 4.3 30 67-96 179-210 (216)
78 2axy_A Poly(RC)-binding protei 42.4 46 0.0016 21.3 4.8 33 66-100 36-72 (73)
79 2i1u_A Thioredoxin, TRX, MPT46 42.4 15 0.00051 24.4 2.4 26 67-92 87-114 (121)
80 3dml_A Putative uncharacterize 42.4 49 0.0017 23.5 5.3 32 66-97 78-111 (116)
81 2l6c_A Thioredoxin; oxidoreduc 42.3 27 0.00094 23.1 3.8 27 67-93 75-103 (110)
82 2fwh_A Thiol:disulfide interch 42.1 12 0.00043 25.9 2.0 28 67-94 94-126 (134)
83 1zzo_A RV1677; thioredoxin fol 41.9 31 0.001 22.9 4.0 29 67-95 104-134 (136)
84 3kh7_A Thiol:disulfide interch 41.8 38 0.0013 24.6 4.7 35 66-100 135-171 (176)
85 1zma_A Bacterocin transport ac 41.5 12 0.00042 25.1 1.9 25 67-91 90-116 (118)
86 2ggt_A SCO1 protein homolog, m 41.1 42 0.0014 23.3 4.8 30 66-95 129-160 (164)
87 3ups_A Iojap-like protein; PSI 40.9 25 0.00086 26.1 3.6 29 75-104 53-81 (136)
88 1lu4_A Soluble secreted antige 39.9 27 0.00091 23.4 3.4 29 67-95 102-135 (136)
89 1gh2_A Thioredoxin-like protei 39.6 33 0.0011 22.3 3.8 26 67-93 77-104 (107)
90 2cte_A Vigilin; K homology typ 39.4 42 0.0014 22.7 4.3 27 73-101 59-85 (94)
91 3i96_A Ethanolamine utilizatio 39.1 44 0.0015 24.3 4.6 30 73-104 74-104 (119)
92 2vm1_A Thioredoxin, thioredoxi 38.7 51 0.0018 21.4 4.7 28 67-95 84-113 (118)
93 2l5l_A Thioredoxin; structural 38.3 42 0.0014 23.1 4.4 29 67-95 95-125 (136)
94 2rli_A SCO2 protein homolog, m 38.0 52 0.0018 23.1 4.9 32 66-97 132-165 (171)
95 1nho_A Probable thioredoxin; b 38.0 37 0.0013 20.7 3.7 22 73-94 62-83 (85)
96 3f3q_A Thioredoxin-1; His TAG, 37.9 36 0.0012 22.5 3.8 27 67-94 80-108 (109)
97 3nec_A Profilin, inflammatory 37.5 67 0.0023 24.4 5.7 44 60-103 116-166 (166)
98 1vra_B Arginine biosynthesis b 37.4 25 0.00085 28.2 3.3 22 75-96 94-115 (215)
99 2opa_A Probable tautomerase YW 37.3 64 0.0022 19.1 5.8 31 76-106 5-36 (61)
100 2v4i_B Glutamate N-acetyltrans 37.1 25 0.00087 28.2 3.3 21 76-96 88-108 (213)
101 1xwb_A Thioredoxin; dimerizati 36.7 44 0.0015 21.2 4.0 26 67-93 77-104 (106)
102 2hh2_A KH-type splicing regula 36.7 24 0.00082 24.6 2.8 25 74-100 55-79 (107)
103 2yj7_A LPBCA thioredoxin; oxid 42.5 7.5 0.00026 25.0 0.0 27 67-93 76-104 (106)
104 3qou_A Protein YBBN; thioredox 35.9 44 0.0015 26.0 4.6 27 67-93 83-111 (287)
105 1fo5_A Thioredoxin; disulfide 35.8 22 0.00076 21.9 2.3 22 73-94 63-84 (85)
106 1acf_A Profilin I; protein bin 35.6 85 0.0029 22.3 5.7 42 62-103 80-125 (125)
107 3h93_A Thiol:disulfide interch 35.6 44 0.0015 24.5 4.3 28 73-100 159-188 (192)
108 3nul_A Profilin I; cytoskeleto 35.4 93 0.0032 22.3 5.9 40 64-103 87-130 (130)
109 3kij_A Probable glutathione pe 35.0 37 0.0013 24.6 3.7 33 67-99 139-173 (180)
110 1whq_A RNA helicase A; double- 34.7 64 0.0022 22.2 4.7 40 63-102 35-77 (99)
111 4fuu_A Leucine aminopeptidase; 34.6 39 0.0013 27.5 4.1 35 86-120 46-90 (309)
112 3lwa_A Secreted thiol-disulfid 34.6 53 0.0018 23.6 4.5 31 66-96 149-181 (183)
113 4fai_A CG5976, isoform B; alph 34.6 34 0.0012 28.3 3.8 34 87-120 58-101 (330)
114 1xhk_A Putative protease LA ho 34.1 42 0.0014 25.6 4.1 23 74-100 39-61 (187)
115 2p2r_A Poly(RC)-binding protei 33.8 46 0.0016 21.3 3.7 25 73-99 49-73 (76)
116 1ypr_A Profilin; actin-binding 33.7 1.2E+02 0.0041 21.6 6.3 42 62-103 80-125 (125)
117 2vqe_K 30S ribosomal protein S 33.4 34 0.0012 25.2 3.2 51 54-104 25-78 (129)
118 2hw4_A 14 kDa phosphohistidine 33.4 61 0.0021 24.4 4.7 65 43-107 27-92 (144)
119 1j5k_A Heterogeneous nuclear r 33.4 65 0.0022 21.4 4.5 27 73-101 58-84 (89)
120 2ctl_A Vigilin; K homology typ 33.3 57 0.002 22.2 4.3 35 65-101 47-88 (97)
121 2hh3_A KH-type splicing regula 33.2 76 0.0026 22.1 5.0 34 66-101 42-81 (106)
122 2dj1_A Protein disulfide-isome 33.0 52 0.0018 22.4 4.1 28 67-94 94-122 (140)
123 2pbd_P Profilin-1, profilin I; 32.7 70 0.0024 23.4 4.9 36 68-103 100-139 (139)
124 2nmm_A 14 kDa phosphohistidine 32.3 71 0.0024 23.8 4.8 65 43-107 18-83 (135)
125 1otf_A 4-oxalocrotonate tautom 32.2 80 0.0027 18.6 5.8 31 76-106 5-36 (62)
126 3dxb_A Thioredoxin N-terminall 32.1 58 0.002 24.6 4.6 29 67-95 87-117 (222)
127 3tc8_A Leucine aminopeptidase; 32.0 45 0.0015 27.4 4.1 37 83-120 44-90 (309)
128 3krm_A Insulin-like growth fac 31.6 63 0.0021 23.4 4.5 35 65-101 115-157 (163)
129 1a8l_A Protein disulfide oxido 31.0 53 0.0018 24.4 4.1 29 67-95 195-225 (226)
130 2znm_A Thiol:disulfide interch 30.9 47 0.0016 24.3 3.8 30 71-100 155-184 (195)
131 3r8n_K 30S ribosomal protein S 30.5 16 0.00054 26.5 0.9 72 54-131 15-89 (117)
132 3gux_A Putative Zn-dependent e 30.1 51 0.0017 27.3 4.1 37 83-120 46-92 (314)
133 2rem_A Disulfide oxidoreductas 29.8 62 0.0021 23.5 4.2 29 70-99 159-187 (193)
134 2ctj_A Vigilin; K homology typ 29.7 45 0.0016 22.8 3.2 34 66-101 49-86 (95)
135 1rre_A ATP-dependent protease 29.7 70 0.0024 24.8 4.7 40 72-112 36-80 (200)
136 3ia1_A THIO-disulfide isomeras 29.5 79 0.0027 21.6 4.6 29 66-94 112-142 (154)
137 3ul3_B Thioredoxin, thioredoxi 29.4 48 0.0016 22.5 3.3 26 67-92 99-126 (128)
138 3u27_C Microcompartments prote 29.3 64 0.0022 25.9 4.4 31 73-103 83-115 (220)
139 3fsi_A RT, reverse transcripta 29.2 64 0.0022 25.2 4.5 41 65-107 193-233 (255)
140 1qgv_A Spliceosomal protein U5 29.2 55 0.0019 23.1 3.8 32 67-98 80-123 (142)
141 3eyt_A Uncharacterized protein 29.1 78 0.0027 21.8 4.5 30 66-95 120-151 (158)
142 3evi_A Phosducin-like protein 29.0 19 0.00064 25.3 1.1 38 66-103 75-114 (118)
143 3adj_A F21M12.9 protein; HYL1, 28.8 1.1E+02 0.0036 19.7 4.8 37 63-99 35-73 (76)
144 3kjj_A NMB1025 protein; YJGF p 28.6 33 0.0011 24.7 2.5 36 69-104 29-64 (128)
145 2ivy_A Hypothetical protein SS 28.6 52 0.0018 22.8 3.4 59 89-154 15-77 (101)
146 2ctk_A Vigilin; K homology typ 28.6 66 0.0023 22.2 4.0 34 66-101 48-85 (104)
147 2b5x_A YKUV protein, TRXY; thi 28.5 71 0.0024 21.4 4.1 29 67-95 113-144 (148)
148 3c4b_A Endoribonuclease dicer; 28.3 1.5E+02 0.0052 23.3 6.6 41 60-100 221-263 (265)
149 2dbc_A PDCL2, unnamed protein 28.2 47 0.0016 23.0 3.2 37 67-103 83-121 (135)
150 3mm5_A Sulfite reductase, diss 28.2 65 0.0022 28.0 4.7 79 50-133 85-195 (418)
151 1ec6_A RNA-binding protein NOV 28.0 96 0.0033 20.3 4.6 26 74-101 51-76 (87)
152 1x4n_A FAR upstream element bi 27.4 1.1E+02 0.0036 20.4 4.8 26 74-101 60-85 (92)
153 1mek_A Protein disulfide isome 27.2 39 0.0013 21.9 2.5 26 67-92 84-113 (120)
154 1uil_A Double-stranded RNA-bin 27.2 1.6E+02 0.0053 20.7 5.8 41 63-103 55-102 (113)
155 3or1_A Sulfite reductase alpha 26.7 79 0.0027 27.8 4.9 80 50-134 87-197 (437)
156 2dj0_A Thioredoxin-related tra 26.6 5.6 0.00019 27.8 -2.1 36 67-102 90-127 (137)
157 3tqm_A Ribosome-associated fac 26.3 69 0.0024 21.5 3.7 35 65-100 49-83 (96)
158 1we8_A Tudor and KH domain con 26.2 98 0.0033 21.1 4.5 26 73-100 61-86 (104)
159 3m21_A Probable tautomerase HP 26.0 1.2E+02 0.004 18.6 5.8 26 81-106 13-39 (67)
160 1vgj_A Hypothetical protein PH 25.8 1.2E+02 0.0041 21.9 5.3 60 55-119 69-131 (184)
161 3lor_A Thiol-disulfide isomera 25.7 97 0.0033 21.2 4.5 30 66-95 123-154 (160)
162 2gjh_A Designed protein; oblig 25.2 1.3E+02 0.0044 18.8 4.7 29 75-104 5-33 (62)
163 3f9u_A Putative exported cytoc 25.0 59 0.002 23.2 3.3 34 67-100 133-170 (172)
164 2vup_A Glutathione peroxidase- 24.9 87 0.003 22.8 4.3 30 66-95 153-184 (190)
165 4ds1_A Dynein light chain 1, c 24.8 68 0.0023 22.1 3.4 24 47-74 74-97 (97)
166 3ha9_A Uncharacterized thiored 24.8 93 0.0032 21.7 4.3 30 66-95 133-163 (165)
167 3gtz_A Putative translation in 24.6 28 0.00094 24.9 1.3 36 69-104 23-58 (124)
168 1di2_A XLRBPA, double stranded 24.5 1.3E+02 0.0046 18.7 5.4 36 63-99 31-68 (69)
169 3k5i_A Phosphoribosyl-aminoimi 24.4 94 0.0032 26.0 4.9 26 74-100 375-400 (403)
170 1hfo_A Migration inhibitory fa 24.2 1.1E+02 0.0039 20.6 4.5 38 63-106 54-92 (113)
171 3adg_A F21M12.9 protein; HYL1, 24.2 1.4E+02 0.0047 18.9 4.7 36 63-98 33-71 (73)
172 2ju5_A Thioredoxin disulfide i 24.1 1E+02 0.0035 21.7 4.5 29 67-95 119-151 (154)
173 2hiy_A Hypothetical protein; C 23.9 1.4E+02 0.0047 22.8 5.4 34 69-105 41-75 (183)
174 3h79_A Thioredoxin-like protei 23.9 78 0.0027 21.2 3.6 27 67-93 95-125 (127)
175 3cgi_A Propanediol utilization 23.9 1.2E+02 0.004 22.1 4.7 31 72-104 78-109 (124)
176 4evm_A Thioredoxin family prot 23.8 87 0.003 20.3 3.8 28 67-94 108-137 (138)
177 3igm_B PF14_0633 protein; AP2 23.8 1.7E+02 0.0059 19.7 5.1 56 45-104 9-64 (77)
178 1dtj_A RNA-binding neurooncolo 23.6 68 0.0023 20.3 3.1 23 74-98 51-73 (76)
179 1sen_A Thioredoxin-like protei 23.5 59 0.002 23.5 3.1 34 67-100 106-152 (164)
180 2jkg_A Profilin; proline-rich 23.4 1.4E+02 0.0048 23.2 5.3 47 58-104 119-172 (179)
181 3adl_A RISC-loading complex su 23.4 1.7E+02 0.0058 19.5 5.6 37 63-100 46-84 (88)
182 3apq_A DNAJ homolog subfamily 23.4 67 0.0023 23.9 3.4 29 67-95 171-201 (210)
183 1vig_A Vigilin; RNA-binding pr 23.1 41 0.0014 21.5 1.9 31 65-97 35-69 (71)
184 3feu_A Putative lipoprotein; a 23.1 65 0.0022 23.9 3.3 25 71-95 157-183 (185)
185 2l5o_A Putative thioredoxin; s 23.0 93 0.0032 21.2 3.9 29 67-95 110-140 (153)
186 1x5e_A Thioredoxin domain cont 23.0 60 0.0021 21.7 2.9 27 67-93 80-107 (126)
187 3io0_A ETUB protein; tamdem re 23.0 1.1E+02 0.0036 24.8 4.7 31 73-103 82-113 (230)
188 3hz8_A Thiol:disulfide interch 23.0 95 0.0033 23.0 4.2 29 71-100 159-187 (193)
189 3n0v_A Formyltetrahydrofolate 22.9 1.4E+02 0.0047 24.4 5.5 82 76-166 11-100 (286)
190 3k12_A Uncharacterized protein 22.9 46 0.0016 23.6 2.3 36 69-104 20-56 (122)
191 3raz_A Thioredoxin-related pro 22.8 77 0.0026 21.8 3.5 30 66-95 108-139 (151)
192 1uiz_A MIF, macrophage migrati 22.5 1.3E+02 0.0044 20.4 4.6 38 63-106 55-93 (115)
193 2os5_A Acemif; macrophage migr 22.4 1.3E+02 0.0045 20.6 4.6 38 63-106 55-93 (119)
194 2xzm_K RPS14E; ribosome, trans 22.4 31 0.0011 26.2 1.3 47 58-104 41-91 (151)
195 4dvc_A Thiol:disulfide interch 22.3 64 0.0022 22.9 3.0 27 69-95 153-181 (184)
196 2ewc_A Conserved hypothetical 22.1 31 0.0011 24.7 1.2 36 69-104 24-59 (126)
197 1mww_A Hypothetical protein HI 22.1 1.8E+02 0.0063 20.0 5.4 32 75-106 63-95 (128)
198 1ilo_A Conserved hypothetical 21.9 50 0.0017 19.8 2.1 18 73-90 57-75 (77)
199 3d9y_A Profilin; yeast, actin- 21.9 1.6E+02 0.0054 20.9 5.1 39 65-103 85-127 (127)
200 2h30_A Thioredoxin, peptide me 21.8 31 0.001 24.1 1.1 30 66-95 124-155 (164)
201 2v1m_A Glutathione peroxidase; 21.7 74 0.0025 22.1 3.2 30 66-95 135-166 (169)
202 3iv4_A Putative oxidoreductase 21.5 84 0.0029 22.3 3.4 26 65-90 82-110 (112)
203 3sir_A Caspase; hydrolase; 2.6 21.5 29 0.001 28.0 1.1 49 58-106 12-61 (259)
204 2jvz_A KH type-splicing, FAR u 21.4 1.1E+02 0.0036 22.0 4.1 35 65-101 121-161 (164)
205 3abf_A 4-oxalocrotonate tautom 21.2 1.4E+02 0.0047 17.7 5.6 30 77-106 7-37 (64)
206 3hcz_A Possible thiol-disulfid 21.2 1.6E+02 0.0054 19.6 4.8 33 67-100 115-147 (148)
207 4axi_A EUTS, ethanolamine carb 21.2 1.3E+02 0.0045 21.9 4.5 30 73-104 80-110 (125)
208 2b7t_A Double-stranded RNA-spe 20.9 1.7E+02 0.0057 18.5 6.0 37 63-100 33-71 (73)
209 2wz9_A Glutaredoxin-3; protein 20.8 1.3E+02 0.0044 21.0 4.4 23 67-90 88-112 (153)
210 4ffl_A PYLC; amino acid, biosy 20.8 88 0.003 25.4 3.9 26 74-100 332-357 (363)
211 3u5c_O RP59A, 40S ribosomal pr 20.8 18 0.00063 27.0 -0.3 51 54-104 23-77 (137)
212 2v8f_A Profilin-2, profilin II 20.6 1.9E+02 0.0066 21.0 5.4 36 68-103 101-140 (140)
213 1vz6_A Ornithine acetyl-transf 20.6 66 0.0023 28.1 3.1 21 76-96 268-288 (393)
214 2fp3_A Caspase NC; apoptosis, 20.5 30 0.001 28.9 0.9 47 58-105 52-100 (316)
215 3cmi_A Peroxiredoxin HYR1; thi 20.3 66 0.0023 22.9 2.7 30 66-95 136-167 (171)
216 2jzx_A Poly(RC)-binding protei 20.3 1E+02 0.0035 22.2 3.8 33 66-100 120-159 (160)
217 2ywi_A Hypothetical conserved 20.3 1.5E+02 0.005 21.2 4.7 30 66-95 133-173 (196)
218 4fay_A Microcompartments prote 20.3 1.3E+02 0.0044 24.8 4.6 29 73-101 110-138 (258)
219 1m72_A Caspase-1; caspase, cys 20.2 30 0.001 28.2 0.8 48 58-105 24-72 (272)
220 3pb6_X Glutaminyl-peptide cycl 20.1 99 0.0034 25.8 4.1 37 83-120 57-104 (330)
221 3hrg_A Uncharacterized protein 20.1 2.4E+02 0.0082 22.4 6.3 85 24-109 116-215 (257)
222 3krm_A Insulin-like growth fac 20.0 2E+02 0.007 20.5 5.5 26 76-103 51-76 (163)
223 2ywq_A Protein Y, ribosomal su 20.0 90 0.0031 21.2 3.3 35 65-100 55-89 (105)
No 1
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=2e-66 Score=416.94 Aligned_cols=155 Identities=85% Similarity=1.317 Sum_probs=152.6
Q ss_pred CCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHH
Q psy17242 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 17 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~ 96 (172)
++.++|+|||||++++|+|||++||..++|++||||+|||++||+++|+++++||+||||+||||||+|+++.|++++++
T Consensus 2 ~~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~ 81 (180)
T 1ytb_A 2 GIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYAR 81 (180)
T ss_dssp CCCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 97 IIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 97 ~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
+|+++|+++++.+|+|||||||||++|+||||+||..|+++++|||||||||+|||.+||+++|||+||||||||
T Consensus 82 ~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitG 156 (180)
T 1ytb_A 82 IIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 156 (180)
T ss_dssp HHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEE
T ss_pred HHHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEe
Confidence 999999999999999999999999999999999999998899999999999999999999999999999999999
No 2
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=1.1e-64 Score=416.54 Aligned_cols=157 Identities=76% Similarity=1.190 Sum_probs=153.3
Q ss_pred CCCCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHH
Q psy17242 15 MGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKY 94 (172)
Q Consensus 15 ~~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~ 94 (172)
.+++.++|+||||+++++|+|||++||..++|++||||+|||++||+++|+++++||+||||+||||||+|+++.|++++
T Consensus 38 ~~~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki 117 (218)
T 3eik_A 38 RSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRY 117 (218)
T ss_dssp --CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 95 ARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 95 ~~~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
+++|+++|+++++.+|+|||||||||++|+|||++||..|+.+++||||+||||+||+.+|++|+|||+||||||||
T Consensus 118 ~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTG 194 (218)
T 3eik_A 118 AKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 194 (218)
T ss_dssp HHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEE
T ss_pred HHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999998
No 3
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=6.2e-64 Score=417.54 Aligned_cols=156 Identities=84% Similarity=1.310 Sum_probs=153.2
Q ss_pred CCCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHH
Q psy17242 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 16 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~ 95 (172)
.++.++|+||||+++++|+|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+|+++.|+++++
T Consensus 61 ~~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~ 140 (240)
T 1rm1_A 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 140 (240)
T ss_dssp CCCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 96 RIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 96 ~~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
++|+++|+++++.+|+|||||||||++|+||||+||..|.++++|||||||||+|||.+|++++|||+||||||||
T Consensus 141 ~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTG 216 (240)
T 1rm1_A 141 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTG 216 (240)
T ss_dssp HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEE
T ss_pred HHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEe
Confidence 9999999999999999999999999999999999999998899999999999999999999999999999999999
No 4
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=1.8e-62 Score=394.50 Aligned_cols=157 Identities=40% Similarity=0.634 Sum_probs=151.4
Q ss_pred CCCCCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHH
Q psy17242 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARK 93 (172)
Q Consensus 14 ~~~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k 93 (172)
+.++..++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||||+|+++.|+++
T Consensus 3 ~~~~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~ 82 (182)
T 1ais_A 3 DMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAK 82 (182)
T ss_dssp CCTTCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCC-CccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 94 YARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 94 ~~~~L~~~g~~-v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
++++|+++|++ .++.+|+|||||||+|++++|||+.||..++ +++||||+||||+||+.+|++++|||+||||||||
T Consensus 83 i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~~-~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTG 160 (182)
T 1ais_A 83 LAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLP-NCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160 (182)
T ss_dssp HHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHST-TEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE
T ss_pred HHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhCC-CCEECCccCceEEEEeCCCcEEEEEecCCEEEEEe
Confidence 99999999998 5789999999999999999999999998864 59999999999999999999999999999999999
No 5
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=2e-62 Score=396.03 Aligned_cols=153 Identities=39% Similarity=0.706 Sum_probs=141.9
Q ss_pred CCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHH
Q psy17242 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARI 97 (172)
Q Consensus 18 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~ 97 (172)
.+++|+||||+++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+|+++.|+++++++
T Consensus 11 ~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~ 90 (188)
T 2z8u_A 11 PEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKE 90 (188)
T ss_dssp CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-CccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 98 IQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 98 L~~~g~~-v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
|+++|++ +++.+|+|||||||+|++++|||+.||..+ ++++||||+||||+||+.+|++++|||+||||||||
T Consensus 91 L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTG 164 (188)
T 2z8u_A 91 LKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 164 (188)
T ss_dssp HHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHS-TTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEES
T ss_pred HHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhC-cCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEe
Confidence 9999998 678999999999999999999999999886 469999999999999999999999999999999999
No 6
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=4.6e-62 Score=396.65 Aligned_cols=155 Identities=42% Similarity=0.679 Sum_probs=150.9
Q ss_pred CCCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHH
Q psy17242 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 16 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~ 95 (172)
.+.+++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus 9 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~ 88 (198)
T 1mp9_A 9 YKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRII 88 (198)
T ss_dssp CCCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-CccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 96 RIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 96 ~~L~~~g~~-v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
++|+++|++ +++.+|+|||||||+|++++|||+.||..+ ++++||||+||||+||+.+|++++|||+||||||||
T Consensus 89 ~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTG 164 (198)
T 1mp9_A 89 KTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-ENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 164 (198)
T ss_dssp HHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHS-SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE
T ss_pred HHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhc-CCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEe
Confidence 999999998 678999999999999999999999999886 469999999999999999999999999999999999
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.96 E-value=5.9e-30 Score=206.35 Aligned_cols=87 Identities=38% Similarity=0.638 Sum_probs=83.9
Q ss_pred CCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHH
Q psy17242 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 17 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~ 96 (172)
..+++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+|+++.|++++++
T Consensus 101 ~~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~ 180 (188)
T 2z8u_A 101 NPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILD 180 (188)
T ss_dssp SCCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHHHH
T ss_pred cCceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q psy17242 97 IIQKLGF 103 (172)
Q Consensus 97 ~L~~~g~ 103 (172)
+|+++|+
T Consensus 181 ~L~~~~~ 187 (188)
T 2z8u_A 181 TIKEVQE 187 (188)
T ss_dssp HHHHHC-
T ss_pred HHHHhcc
Confidence 9999874
No 8
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=99.96 E-value=3.8e-30 Score=214.11 Aligned_cols=101 Identities=28% Similarity=0.319 Sum_probs=62.0
Q ss_pred EEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCccccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCC
Q psy17242 66 TTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELF 145 (172)
Q Consensus 66 ~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~f 145 (172)
.--+=|+|||+++||++|.++++.++ +.++++|.+....+++|||||||+|++++|||+.||..++ +++||||+|
T Consensus 25 ~~~~~f~sGk~~~s~~~s~~~~~~~~----~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~~-n~eYePe~F 99 (240)
T 1rm1_A 25 VWENQNRDGTKPATTFQSEEDIKRAA----PESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHAR-NAEYNPKRF 99 (240)
T ss_dssp ----------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHBT-TEEECTTTC
T ss_pred cccccCCCCcceecccccHHHHHHHH----HHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhCC-CcEEcCccc
Confidence 34467999999999998888766554 5667777776677899999999999999999999998775 599999999
Q ss_pred ceeEEEEcCCcEEEEEecCcEEEEEe
Q psy17242 146 PGLIYRMVKPRIVLLIFVSGKVVLTV 171 (172)
Q Consensus 146 PGliyR~~~~k~~~lIF~SGkvviTg 171 (172)
|||+||+.+|++++|||+||||||||
T Consensus 100 pgli~Rl~~Pk~t~lIF~SGKiV~TG 125 (240)
T 1rm1_A 100 AAVIMRIREPKTTALIFASGKMVVTG 125 (240)
T ss_dssp SEEEEEEETTEEEEEEETTSEEEEEE
T ss_pred ceEEEEeCCCcEEEEEECCCeEEEEe
Confidence 99999999999999999999999999
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.96 E-value=1.6e-29 Score=205.21 Aligned_cols=88 Identities=41% Similarity=0.581 Sum_probs=85.3
Q ss_pred CCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHH
Q psy17242 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 17 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~ 96 (172)
..+++|+|||||++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++++
T Consensus 101 ~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~ 180 (198)
T 1mp9_A 101 KPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFD 180 (198)
T ss_dssp CCEEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q psy17242 97 IIQKLGFP 104 (172)
Q Consensus 97 ~L~~~g~~ 104 (172)
+|+++|+.
T Consensus 181 ~L~~~~~~ 188 (198)
T 1mp9_A 181 KLVELDCV 188 (198)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCC
Confidence 99999974
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.96 E-value=2.2e-29 Score=202.11 Aligned_cols=86 Identities=42% Similarity=0.707 Sum_probs=82.6
Q ss_pred CCCCcEEEEEEEEEEcCCccChHHHHhhCCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHH
Q psy17242 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 16 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~ 95 (172)
...+++|+|||||++++++|||+.||...+|++||||+|||++||+++|+++++||+||||+||||||+|+++.|+++++
T Consensus 96 ~~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~ 175 (182)
T 1ais_A 96 RAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLL 175 (182)
T ss_dssp SSCEEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred cccceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc
Q psy17242 96 RIIQKL 101 (172)
Q Consensus 96 ~~L~~~ 101 (172)
++|+++
T Consensus 176 ~~L~~~ 181 (182)
T 1ais_A 176 RELDKY 181 (182)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 999864
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.94 E-value=1.3e-26 Score=185.67 Aligned_cols=86 Identities=29% Similarity=0.459 Sum_probs=81.6
Q ss_pred CCCcEEEEEEEEEEcCCccChHHHHhh-CCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHH
Q psy17242 17 GSVPQLQNIVSTVNLGCKLDLKKIALH-ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 17 ~~~~~I~NvVas~~l~~~ldL~~la~~-~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~ 95 (172)
..+++|+|||||+|++.+|||+.+|.. ..+++||||+||||+||+.+|+++++||+||||+|||||+.++++.|++++.
T Consensus 92 ~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~ 171 (180)
T 1ytb_A 92 FTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIY 171 (180)
T ss_dssp CEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred cccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHH
Confidence 368999999999999999999999976 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q psy17242 96 RIIQKLG 102 (172)
Q Consensus 96 ~~L~~~g 102 (172)
++|.+++
T Consensus 172 p~L~~~~ 178 (180)
T 1ytb_A 172 PVLSEFR 178 (180)
T ss_dssp HHHHHTB
T ss_pred HHHHHHh
Confidence 9998864
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.93 E-value=2.9e-26 Score=188.27 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=80.5
Q ss_pred CCcEEEEEEEEEEcCCccChHHHHhh-CCCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHH
Q psy17242 18 SVPQLQNIVSTVNLGCKLDLKKIALH-ARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 18 ~~~~I~NvVas~~l~~~ldL~~la~~-~~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~ 96 (172)
.+++|+||||+++++++|||+.||.. .++++||||+||||+||+.+|+++++||+||||+||||||+++++.|++++.+
T Consensus 131 ~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p 210 (218)
T 3eik_A 131 DDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYP 210 (218)
T ss_dssp EEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 47999999999999999999999975 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q psy17242 97 IIQKL 101 (172)
Q Consensus 97 ~L~~~ 101 (172)
+|.+.
T Consensus 211 ~L~~f 215 (218)
T 3eik_A 211 VLIQH 215 (218)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 13
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=94.46 E-value=0.054 Score=46.02 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=30.6
Q ss_pred cccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHH
Q psy17242 52 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDS 87 (172)
Q Consensus 52 e~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a 87 (172)
..-|+..++.+.+.+++.+|.|||+++.|..+++.+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~ 62 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEA 62 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHH
Confidence 345799999999999999999999999998655443
No 14
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=94.38 E-value=0.012 Score=48.96 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=31.0
Q ss_pred CcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHH
Q psy17242 51 PKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSR 88 (172)
Q Consensus 51 Pe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~ 88 (172)
+..-|+..++.+.+.+++++|.|||++++|...++.+.
T Consensus 25 ~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~ 62 (257)
T 3vn5_A 25 KINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLK 62 (257)
T ss_dssp ECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHH
T ss_pred ccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHH
Confidence 33457889999999999999999999999996554443
No 15
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=71.63 E-value=6.9 Score=26.70 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred eCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 81 AKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 81 akS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
|.+.|++++-++-+++.||++|++
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 668899999999999999999986
No 16
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=71.17 E-value=5.4 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++....+++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 77889999997 789998888877766653
No 17
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=70.77 E-value=7.4 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=23.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|..|+.+ ..|..+.+++...+++++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 77888999986 679999988888777654
No 18
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=70.70 E-value=5.1 Score=26.12 Aligned_cols=29 Identities=38% Similarity=0.597 Sum_probs=23.2
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++....+++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence 67788999987 678888888888777654
No 19
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=70.17 E-value=7.4 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=22.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++.+..+++++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence 77788999986 679988888877776543
No 20
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=69.95 E-value=5.8 Score=25.71 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ .+|..+.++.+..++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 67888999986 67998988888777654
No 21
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=69.92 E-value=7.1 Score=25.49 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|..+.++.+..++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 67888999986 67998988887777665
No 22
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=68.40 E-value=7.8 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=23.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ .+|..+.++++..+++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 67778999987 789989888887776653
No 23
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=67.76 E-value=8.8 Score=25.23 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=22.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
++.+|.+|+++ ..|..+.++.+..+++++
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 77778999987 579888888877776654
No 24
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=66.42 E-value=7 Score=28.42 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=20.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|++||++ ..|+.+.++++..+++++
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l 124 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIV 124 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 88889999986 789989888777666554
No 25
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=65.57 E-value=7.8 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
++.+|.+|+++ .+|..+.++....+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 77788999997 6788888887766654
No 26
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=65.47 E-value=10 Score=25.75 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 67788999986 678888888777766553
No 27
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=65.43 E-value=7.8 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.8
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYARII 98 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L 98 (172)
.+++|..+|+++ ..|..+.++....++++++.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 577888999996 678889999888888877654
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=64.74 E-value=9.2 Score=25.50 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=26.7
Q ss_pred cEEEEEecCCe--------EEEEeeCCHHHHHHHHHHHHHHHH
Q psy17242 65 RTTALIFSSGK--------MVCTGAKSEEDSRLAARKYARIIQ 99 (172)
Q Consensus 65 k~t~lIf~SGK--------ivitGakS~e~a~~a~~k~~~~L~ 99 (172)
.+.+.|-.+|. +.++| +.+.+..|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 36788888888 99999 78888888888777654
No 29
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=64.71 E-value=10 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=27.8
Q ss_pred cceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 54 FAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 54 fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
|+++.+++. + .++.|.++|. .+++..|...+..+++++
T Consensus 56 ~~~v~I~fp--~------~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 56 MPKVHIEFT--E------GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CSSSEEEEC--S------SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeC--C------CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 456555543 3 6889999998 677888888887777765
No 30
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=64.51 E-value=12 Score=23.88 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=22.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++....+++++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 67788999985 678888888877776654
No 31
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=64.45 E-value=12 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.8
Q ss_pred EEEEecCCeEE-----------EEe-eCCHHHHHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV-----------CTG-AKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 67 t~lIf~SGKiv-----------itG-akS~e~a~~a~~k~~~~L~~ 100 (172)
|+.+|..|+++ +.| ..+.+++...++.+.+-.++
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~ 125 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMR 125 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhc
Confidence 55599999998 899 89999999999998877654
No 32
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=63.88 E-value=5.1 Score=26.49 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=22.8
Q ss_pred EEEEecCCeEEE--EeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMVC--TGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKivi--tGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++- .|..+.++....++++
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 788899999875 7998888887776654
No 33
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=62.86 E-value=12 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|. +.++++..+++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 68889999985 6788 8887777666553
No 34
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=61.95 E-value=12 Score=26.03 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.1
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++....+++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 78888999987 789988888777766543
No 35
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=61.37 E-value=13 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=28.1
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L~~ 100 (172)
|+.+|.+|+++ ..|..+.+++...+++++..-.+
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 78889999995 77999999999888888765444
No 36
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=61.15 E-value=9.4 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.2
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+.+ .+|. +.++.+..++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 78888999996 6788 888877766654
No 37
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=60.72 E-value=6.6 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
++.+|.+|+++ .+|..+.++....++++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKH 104 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence 67778999986 67888888777666543
No 38
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=60.33 E-value=9.7 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=21.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|. +.++++..++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 78888999987 6688 888887777654
No 39
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=60.19 E-value=11 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.++....+++++
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHh
Confidence 78889999987 678888888887777655
No 40
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=58.20 E-value=15 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
-|+++|++|+.+ +.|+.+.++....+++++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 399999999996 569999888877776654
No 41
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=58.18 E-value=15 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.0
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 77888999997 789988888777666543
No 42
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=58.01 E-value=11 Score=25.07 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAA 91 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~ 91 (172)
|+.+|.+||++ ..|..+.++....+
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l 100 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELV 100 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHH
Confidence 67777999997 78998887655443
No 43
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=57.66 E-value=15 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.043 Sum_probs=28.7
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L~~ 100 (172)
.+++|..+|+++ ..|..+.++....++++++.+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 164 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYSK 164 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 588999999997 56888899988888888776654
No 44
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=56.92 E-value=7.7 Score=25.91 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ .+|. +.++.+..++++
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 68889999985 6788 887777666543
No 45
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=56.56 E-value=15 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|++|+.+ .+|+ +.+++++.+++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~k 103 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVEK 103 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence 88999999986 6786 67666655543
No 46
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=55.89 E-value=16 Score=28.03 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=29.4
Q ss_pred EEEEEecCCeEE-----------EEeeCC-HHHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV-----------CTGAKS-EEDSRLAARKYARIIQK 100 (172)
Q Consensus 66 ~t~lIf~SGKiv-----------itGakS-~e~a~~a~~k~~~~L~~ 100 (172)
.|+++|.+|+.+ +.|+.+ .+++...++++++--++
T Consensus 97 PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 97 VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 699999999997 779977 88888888888877554
No 47
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=55.82 E-value=18 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~~ 96 (172)
|+.+|.+|+++ ..|. +.++++..++++++
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~ 132 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILD 132 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence 67788999987 5687 77777776665543
No 48
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=54.93 E-value=20 Score=24.75 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=20.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ .+| .+.+++...+++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 68889999986 678 47777776666554
No 49
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=54.70 E-value=15 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|. +.++++..++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 77888999986 6788 887777666654
No 50
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=54.48 E-value=18 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=25.1
Q ss_pred eEEEEeeCCHHHHHHHHHHHHHHHHHcCCCC
Q psy17242 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFPA 105 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~~L~~~g~~v 105 (172)
=|+|||. |..+++..++.+.+.+++.|...
T Consensus 37 fVIatg~-S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 37 FLICHGN-SEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEcC-CHHHHHHHHHHHHHHHHHcCCcc
Confidence 3677766 89999999999999999988653
No 51
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=54.44 E-value=6.8 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ ..|..+.++.+..+++
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 67777999986 6799888877666544
No 52
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=51.96 E-value=20 Score=26.51 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
|+|||. |..+++..++.+.+.+++.|..
T Consensus 38 VIaTg~-S~rqv~Aiad~v~~~lk~~g~~ 65 (130)
T 2id1_A 38 IVATGD-SNRQVKALANSVQVKLKEAGVD 65 (130)
T ss_dssp EEEECS-SHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 677766 8999999999999999998874
No 53
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.90 E-value=24 Score=23.82 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEe-cCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf-~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+| .+|+++ .+|..+.++....+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 66677 799997 56988887766655544
No 54
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=51.49 E-value=24 Score=24.98 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=26.6
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHHHHHHHc
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~~~L~~~ 101 (172)
.+++| .+|+|+-. |....++.+..++.+.+.|+++
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68889 99999854 5555667777888888777764
No 55
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=51.33 E-value=23 Score=23.65 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ .+|.. .++++..++++
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 118 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLH 118 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHH
Confidence 78889999986 67887 77766666554
No 56
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=51.18 E-value=11 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=20.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ ..|..+.++....+++
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 66777999997 7899888877666543
No 57
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=49.43 E-value=28 Score=25.64 Aligned_cols=32 Identities=0% Similarity=-0.114 Sum_probs=26.4
Q ss_pred EEEEEecCCeEEE--EeeCCHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVC--TGAKSEEDSRLAARKYARI 97 (172)
Q Consensus 66 ~t~lIf~SGKivi--tGakS~e~a~~a~~k~~~~ 97 (172)
-|+++|++|+.+- .|+.+.++....+++++..
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l~~ 124 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAE 124 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 4999999999975 5999999888888776643
No 58
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=48.92 E-value=27 Score=22.87 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=19.5
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|. +.+++...++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence 68899999985 5787 466666655554
No 59
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=48.67 E-value=20 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ .+|+.+.+..+..++++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 88999999986 679988888776665554
No 60
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=48.61 E-value=14 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAAR 92 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~ 92 (172)
|+.+|.+|+++ ..|.. .++++..++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 67788999997 78886 666555443
No 61
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=48.21 E-value=25 Score=23.57 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=19.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ .+|.. .++....++++
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 68899999997 57874 66666655543
No 62
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=47.81 E-value=28 Score=23.44 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=20.5
Q ss_pred EEEEec-CCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFS-SGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~-SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|. +|+++ ..|..+.+++...+++.
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 677777 99996 66888887766655543
No 63
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=46.79 E-value=14 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=26.9
Q ss_pred EEEEEecCCe--------EEEEeeCCHHHHHHHHHHHHHHHHHcC
Q psy17242 66 TTALIFSSGK--------MVCTGAKSEEDSRLAARKYARIIQKLG 102 (172)
Q Consensus 66 ~t~lIf~SGK--------ivitGakS~e~a~~a~~k~~~~L~~~g 102 (172)
|.+.|-..|. |.++| +.+.+..|.+.+..++++.+
T Consensus 46 a~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 46 VKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp SEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCCS
T ss_pred CeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhccC
Confidence 5666777666 99999 67788888888888877643
No 64
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=46.11 E-value=33 Score=21.80 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=19.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|. +.++.+..++++
T Consensus 75 t~~~~~~g~~~~~~~G~-~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSGA-NETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCC-CHHHHHHHHHhh
Confidence 68889999986 5674 777766665543
No 65
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=45.35 E-value=30 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++ ..|. +.++.+..++++
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 78888999986 5785 777766666553
No 66
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=45.04 E-value=26 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEecCCeE--EEEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKM--VCTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKi--vitGakS~e~a~~a~~k 93 (172)
|+.+|.+|++ ...|..+.+++...+++
T Consensus 81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 7888899998 46788888887766654
No 67
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.61 E-value=31 Score=23.18 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~~ 96 (172)
|+.+|..|+.+ ..|..+.++....+++++.
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 78888889976 5688888887777666543
No 68
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=44.53 E-value=34 Score=22.66 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ ..|. +.++.+..+++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~ 115 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVGA-SIAKVEDMIKK 115 (117)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeCC-CHHHHHHHHHH
Confidence 68889999986 5684 67666665554
No 69
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=44.44 E-value=22 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccccc----------eEEEEEEEee
Q psy17242 87 SRLAARKYARIIQKLGFPAKFLDF----------KIQNMVGSCD 120 (172)
Q Consensus 87 a~~a~~k~~~~L~~~g~~v~~~~f----------~v~NIvat~~ 120 (172)
-+++.+-|.+.|+++|+++...+| +.+||+|+.+
T Consensus 31 ~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 31 HQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 356788899999999998765544 4579999987
No 70
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=44.43 E-value=17 Score=23.31 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ ..|..+.++.+..+++
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 78888999986 5688888887776654
No 71
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=44.08 E-value=31 Score=22.63 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.6
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHHcC
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQKLG 102 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~~g 102 (172)
+.+.++| +.++++.|.+.+..++++.+
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhcc
Confidence 5799999 48899999999999888753
No 72
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=44.03 E-value=34 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.6
Q ss_pred cEEEEEecCC-----eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 65 RTTALIFSSG-----KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 65 k~t~lIf~SG-----KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.+.+.|...| .|.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 4677777888 8999997 478888888888877664
No 73
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=44.01 E-value=41 Score=25.02 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=44.1
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCcc----ccceEEEEEEEeecCccccHHHHHHHcCCCcccccCCCce-eE
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQK-LGFPAKF----LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPG-LI 149 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~-~g~~v~~----~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPG-li 149 (172)
|+|||. .|+.+.-+.+=++.|++ .++.+.. ..--|-.|+-- .=|||++-+.+.+ ..-....|.| ++
T Consensus 45 i~itgv--peqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~-----gddlea~ekalke-mirqarkfagtvt 116 (170)
T 4hhu_A 45 IVITGV--PEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFE-----GDDLEALEKALKE-MIRQARKFAGTVT 116 (170)
T ss_dssp EEEESC--CHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEE-----CSCHHHHHHHHHH-HHHHHHHTTCEEE
T ss_pred EEEeCC--cHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEe-----cCcHHHHHHHHHH-HHHHHHhhcceEE
Confidence 678998 56766666555555544 4443221 11112222222 3378988776654 3344556888 68
Q ss_pred EEEcCCcEEEE
Q psy17242 150 YRMVKPRIVLL 160 (172)
Q Consensus 150 yR~~~~k~~~l 160 (172)
|.+.+.+.++.
T Consensus 117 ytl~gn~l~i~ 127 (170)
T 4hhu_A 117 YTLSGNRLVIV 127 (170)
T ss_dssp EEECSSEEEEE
T ss_pred EEEeCCEEEEE
Confidence 88888876643
No 74
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=42.96 E-value=34 Score=22.18 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|. +.++....+++++
T Consensus 82 t~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVGA-DKDGLPTLVAKHA 111 (113)
T ss_dssp EEEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence 77888999985 5674 7778777777665
No 75
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=42.83 E-value=23 Score=28.32 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=19.4
Q ss_pred eEEEEeeCCHHHHHHHHHHHHH
Q psy17242 75 KMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~ 96 (172)
.|.++||+|.++|+.+++.+++
T Consensus 88 ~v~V~gA~s~~~A~~iA~~Ia~ 109 (205)
T 3it4_B 88 TVTVTGAATEDDALVAARQIAR 109 (205)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 3678999999999999998874
No 76
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=42.58 E-value=41 Score=21.89 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=19.0
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|. +.++++..+++++
T Consensus 79 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 79 YFIIIHKGTILKELSGA-DPKEYVSLLEDCK 108 (112)
T ss_dssp EEEEEETTEEEEEECSC-CHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEecCC-CHHHHHHHHHHHH
Confidence 67788999986 4577 4445666555544
No 77
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=42.56 E-value=29 Score=25.91 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=25.0
Q ss_pred EEEEecCCeE--EEEeeCCHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKM--VCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 67 t~lIf~SGKi--vitGakS~e~a~~a~~k~~~ 96 (172)
|+.|+.+||. .+.|+.+.++...+++++..
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 6677889998 78999999999988887653
No 78
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=42.43 E-value=46 Score=21.29 Aligned_cols=33 Identities=9% Similarity=-0.013 Sum_probs=24.6
Q ss_pred EEEEEecCC----eEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSG----KMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 66 ~t~lIf~SG----KivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+.+.|...| .+.++|. .+.+..|.+.+..+|++
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 445555555 4888887 88999999999888764
No 79
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=42.42 E-value=15 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAAR 92 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~ 92 (172)
|+.+|.+|+++ .+|..+.++++..++
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~ 114 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELS 114 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTC
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 77889999986 678888776665544
No 80
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=42.39 E-value=49 Score=23.49 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=26.3
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYARI 97 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~ 97 (172)
-|+++|.+||.+ ++|+.+.++....+++++..
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 389999999986 68999999988888876543
No 81
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=42.30 E-value=27 Score=23.11 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=20.2
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ .+|+.+.++++..+++
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~ 103 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYAS 103 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 77788999985 4688888876665543
No 82
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=42.12 E-value=12 Score=25.94 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=22.4
Q ss_pred EEEEe-cCCeEE----EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV----CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf-~SGKiv----itGakS~e~a~~a~~k~ 94 (172)
|+.+| .+|+++ ..|..+.+++...++++
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 67777 999996 89999988877766654
No 83
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=41.88 E-value=31 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=21.3
Q ss_pred EEEEe-cCCeEE-EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV-CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf-~SGKiv-itGakS~e~a~~a~~k~~ 95 (172)
++.++ .+|+++ ..|..+.++....+++++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 44455 799996 788888888777776654
No 84
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=41.76 E-value=38 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=28.7
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~~~L~~ 100 (172)
.+++|..+|+|+-. |..+.++....++++++.++.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~~ 171 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLLD 171 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 58888899999754 888899999888888877653
No 85
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=41.55 E-value=12 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=18.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAA 91 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~ 91 (172)
|+.+|.+|+++ ..|..+.+++...+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 77788999986 56888877766544
No 86
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=41.08 E-value=42 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=22.9
Q ss_pred EEEEEecCCeEEE--EeeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVC--TGAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivi--tGakS~e~a~~a~~k~~ 95 (172)
.+++|..+|+++- .|..+.+++...+++++
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 7889999999985 46667777777766654
No 87
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=40.87 E-value=25 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=24.1
Q ss_pred eEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
=|+|||. |..+++..++.+.+.|++.|..
T Consensus 53 fVIatg~-S~rqv~Aiad~v~~~lk~~g~~ 81 (136)
T 3ups_A 53 MVIASGR-SSRQVTAMAQKLADRIKAATGY 81 (136)
T ss_dssp EEEEECS-SHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEcC-CHHHHHHHHHHHHHHHHHcCCc
Confidence 4667766 8999999999999999988754
No 88
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=39.86 E-value=27 Score=23.37 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=20.4
Q ss_pred EEEEe-cCCeEE-EE---eeCCHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV-CT---GAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf-~SGKiv-it---GakS~e~a~~a~~k~~ 95 (172)
++.++ .+|+++ .. |..+.++....+++++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 44455 899997 66 8888888777766643
No 89
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=39.62 E-value=33 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=17.0
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+.+ .+|.. .++++..+++
T Consensus 77 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~ 104 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGAD-AVGLEEKIKQ 104 (107)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCC-HHHHHHHHHH
Confidence 78888999986 56764 3445444443
No 90
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=39.40 E-value=42 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
+|.|.++|. .+.+..|.+.+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999997 788888888888887664
No 91
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=39.08 E-value=44 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCC
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQK-LGFP 104 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~ 104 (172)
+|-++++| ++.+.+.|++...+.+++ +||.
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~~l~f~ 104 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGRLLNYT 104 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhhccCeE
Confidence 57888999 899999999999999976 6775
No 92
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=38.68 E-value=51 Score=21.43 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=20.1
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|. +.++....+++++
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 67888999986 5775 6777666666554
No 93
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=38.33 E-value=42 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred EEEEe-cCCeEE-EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV-CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf-~SGKiv-itGakS~e~a~~a~~k~~ 95 (172)
|+.+| .+|+++ ..|..+.++++..+++..
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 67778 899974 578888888777666554
No 94
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=38.02 E-value=52 Score=23.07 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=25.0
Q ss_pred EEEEEecCCeEEE--EeeCCHHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVC--TGAKSEEDSRLAARKYARI 97 (172)
Q Consensus 66 ~t~lIf~SGKivi--tGakS~e~a~~a~~k~~~~ 97 (172)
.+++|..+|+|+- .|..+.+++...++++++.
T Consensus 132 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 165 (171)
T 2rli_A 132 AIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAA 165 (171)
T ss_dssp EEEEECTTSCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6889999999985 5777788888777776654
No 95
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=38.01 E-value=37 Score=20.74 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=18.2
Q ss_pred CCeEEEEeeCCHHHHHHHHHHH
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKY 94 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~ 94 (172)
+|++...|..+.++.+..+++.
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 9999889998888888777654
No 96
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=37.93 E-value=36 Score=22.46 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=19.9
Q ss_pred EEEEecCCeEEE--EeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMVC--TGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKivi--tGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|+++- .|. +.++++..++++
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 788889999865 588 667777666654
No 97
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=37.53 E-value=67 Score=24.42 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=32.3
Q ss_pred EEcCCcEEEEEecCCe-EEEEeeCCH------HHHHHHHHHHHHHHHHcCC
Q psy17242 60 RIREPRTTALIFSSGK-MVCTGAKSE------EDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 60 R~~~Pk~t~lIf~SGK-ivitGakS~------e~a~~a~~k~~~~L~~~g~ 103 (172)
|-+..+.-+.|..+++ -++.|.-.+ .++..++.++++.|.+.|+
T Consensus 116 ~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 116 MCARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EEEETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EeccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 4445566678888888 544444333 3899999999999999885
No 98
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=37.37 E-value=25 Score=28.25 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.1
Q ss_pred eEEEEeeCCHHHHHHHHHHHHH
Q psy17242 75 KMVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~ 96 (172)
.|.++||+|.++|+.+++.+++
T Consensus 94 ~v~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 94 EVEVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEEEESSHHHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHcC
Confidence 3678999999999999998873
No 99
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=37.32 E-value=64 Score=19.06 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=24.7
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
|.+.+.+|.|+-+.-++.+.+.|.+ +|.+..
T Consensus 5 i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 5 VKMLEGRTDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 4455667999999999999999987 687643
No 100
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=37.12 E-value=25 Score=28.18 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEeeCCHHHHHHHHHHHHH
Q psy17242 76 MVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~ 96 (172)
|.++||+|.++|+.+++.+++
T Consensus 88 V~V~GA~s~~~A~~vA~sIa~ 108 (213)
T 2v4i_B 88 VQVTGARDDAQAKRVGKTVVN 108 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcc
Confidence 679999999999999998863
No 101
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=36.70 E-value=44 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=17.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|.+|+++ .+| .+.++.+..+++
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 68888999985 467 466665555443
No 102
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=36.69 E-value=24 Score=24.60 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.0
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+.|.|+| +.|+++.|.+.+..++++
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhc
Confidence 6788999 688888888888777654
No 103
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=42.51 E-value=7.5 Score=24.95 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=19.5
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
++.+|.+|+++ ..|..+.++....+++
T Consensus 76 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 2yj7_A 76 TLLLFKNGQVVDRLVGAQPKEALKERIDK 104 (106)
Confidence 66777999987 5687777776665554
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=35.94 E-value=44 Score=26.03 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.2
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k 93 (172)
|+.+|..|+++ .+|..+.+.+...++.
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 111 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDX 111 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHH
Confidence 88899999998 7899988877766554
No 105
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=35.76 E-value=22 Score=21.86 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.1
Q ss_pred CCeEEEEeeCCHHHHHHHHHHH
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKY 94 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~ 94 (172)
+|++...|..+.++.+..+++.
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 9999889998888888777653
No 106
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=35.63 E-value=85 Score=22.32 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=32.5
Q ss_pred cCCcEEEEEecCCeEEEEeeCC----HHHHHHHHHHHHHHHHHcCC
Q psy17242 62 REPRTTALIFSSGKMVCTGAKS----EEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 62 ~~Pk~t~lIf~SGKivitGakS----~e~a~~a~~k~~~~L~~~g~ 103 (172)
+..+.-+.|.++++.++.|--. ..++..++.++++.|.+.|+
T Consensus 80 kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~ladyL~~~gy 125 (125)
T 1acf_A 80 KKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKLADYLIGQGF 125 (125)
T ss_dssp EETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC
T ss_pred ecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3345567788888888776533 56899999999999999885
No 107
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=35.56 E-value=44 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCeEEEE--eeCCHHHHHHHHHHHHHHHHH
Q psy17242 73 SGKMVCT--GAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 73 SGKivit--GakS~e~a~~a~~k~~~~L~~ 100 (172)
+||..+. |+.+.++....++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999988877554
No 108
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=35.44 E-value=93 Score=22.35 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=31.0
Q ss_pred CcEEEEEecCCeEEEEeeCC----HHHHHHHHHHHHHHHHHcCC
Q psy17242 64 PRTTALIFSSGKMVCTGAKS----EEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 64 Pk~t~lIf~SGKivitGakS----~e~a~~a~~k~~~~L~~~g~ 103 (172)
.+.-+.|.++++.++.|.-. ..++..++.++++.|++.|+
T Consensus 87 g~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ladYL~~~GY 130 (130)
T 3nul_A 87 GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLIESEL 130 (130)
T ss_dssp TTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34457777888888766533 55899999999999999885
No 109
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=34.98 E-value=37 Score=24.62 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=26.1
Q ss_pred EEEEecCCeEEEE--eeCCHHHHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMVCT--GAKSEEDSRLAARKYARIIQ 99 (172)
Q Consensus 67 t~lIf~SGKivit--GakS~e~a~~a~~k~~~~L~ 99 (172)
+++|...|+|+-. |..+.+++...++++++.+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 8999999999754 77788888888877766554
No 110
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=34.71 E-value=64 Score=22.23 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=28.7
Q ss_pred CCcEEEEEecCC-eEEEEe-eCCHHHHH-HHHHHHHHHHHHcC
Q psy17242 63 EPRTTALIFSSG-KMVCTG-AKSEEDSR-LAARKYARIIQKLG 102 (172)
Q Consensus 63 ~Pk~t~lIf~SG-KivitG-akS~e~a~-~a~~k~~~~L~~~g 102 (172)
++.-++.++-.| +...+| .+|..+|+ .|++..++.|.+.+
T Consensus 35 ~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 35 RQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 355678888899 787777 56777776 55666777777765
No 111
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=34.63 E-value=39 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccc----------eEEEEEEEee
Q psy17242 86 DSRLAARKYARIIQKLGFPAKFLDF----------KIQNMVGSCD 120 (172)
Q Consensus 86 ~a~~a~~k~~~~L~~~g~~v~~~~f----------~v~NIvat~~ 120 (172)
..+.+.+-|...|+++|+++....| +.+||+|+.+
T Consensus 46 ~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~ 90 (309)
T 4fuu_A 46 EHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYK 90 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEEC
Confidence 3456788999999999988764433 5789999886
No 112
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=34.60 E-value=53 Score=23.58 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=24.7
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~~ 96 (172)
.+++|..+|+++ ..|..+.+++...++++++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 588899999997 4677788888888777653
No 113
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=34.58 E-value=34 Score=28.31 Aligned_cols=34 Identities=9% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCCCccccc----------eEEEEEEEee
Q psy17242 87 SRLAARKYARIIQKLGFPAKFLDF----------KIQNMVGSCD 120 (172)
Q Consensus 87 a~~a~~k~~~~L~~~g~~v~~~~f----------~v~NIvat~~ 120 (172)
.+.+.+-|.+.|+++|+++...+| ..+||+|+.+
T Consensus 58 ~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~ 101 (330)
T 4fai_A 58 HSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLN 101 (330)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEEC
Confidence 356888899999999998765544 4579999876
No 114
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=34.11 E-value=42 Score=25.60 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=18.9
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
|+..+|| +..+++.+++...|++
T Consensus 39 g~~~~tG----~~~res~~~~~a~l~~ 61 (187)
T 1xhk_A 39 HLLNISG----DIAKHSITLASALSKK 61 (187)
T ss_dssp EEESSCH----HHHHHHHHHHHHHHHH
T ss_pred CceEEec----HHHHHHHHHHHHHHhh
Confidence 7888888 7778888888888887
No 115
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=33.81 E-value=46 Score=21.31 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=19.9
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHH
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQ 99 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~ 99 (172)
.+.+.++|. .+.+..|.+.+..+++
T Consensus 49 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 49 DRQVTITGS--AASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeC--HHHHHHHHHHHHHHHH
Confidence 578899996 7888888888777764
No 116
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=33.69 E-value=1.2e+02 Score=21.58 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=33.0
Q ss_pred cCCcEEEEEecCCeEEEEeeCC----HHHHHHHHHHHHHHHHHcCC
Q psy17242 62 REPRTTALIFSSGKMVCTGAKS----EEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 62 ~~Pk~t~lIf~SGKivitGakS----~e~a~~a~~k~~~~L~~~g~ 103 (172)
+..+.-+.+.++++.++.|.-. ..++..++.++++.|++.|+
T Consensus 80 kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~ladYL~~~gy 125 (125)
T 1ypr_A 80 RHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp EETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3445567888888888877543 56899999999999999885
No 117
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=33.44 E-value=34 Score=25.18 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=34.5
Q ss_pred cceEEEEEcCCcEEEEEec-CCeEEEEeeC--CHHHHHHHHHHHHHHHHHcCCC
Q psy17242 54 FAAVIMRIREPRTTALIFS-SGKMVCTGAK--SEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 54 fpgli~R~~~Pk~t~lIf~-SGKivitGak--S~e~a~~a~~k~~~~L~~~g~~ 104 (172)
|+--++-+.++.-.++.|+ +|.+-.-|++ +...|..|++.+++.++++|+.
T Consensus 25 ~NNTivtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~ 78 (129)
T 2vqe_K 25 YNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQ 78 (129)
T ss_dssp SSCEEEEEECTTSCEEEECCTTTTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEEcCCCCEEEEEeccceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCe
Confidence 4445556666654444444 4666566654 4678888999999999999975
No 118
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=33.39 E-value=61 Score=24.40 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=44.9
Q ss_pred hCCCcEEcC-cccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCcc
Q psy17242 43 HARNAEYNP-KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKF 107 (172)
Q Consensus 43 ~~~n~~YeP-e~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v~~ 107 (172)
.++.++=+| ..|-=+.+|+..+...-.=+...|.++-|.+..+-=....+++.+.|+++|++++.
T Consensus 27 ~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~IVRG~~~a~YH~Diyd~~~~el~~~Gl~~ec 92 (144)
T 2hw4_A 27 LIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCEC 92 (144)
T ss_dssp GSCSEEECCSEEEEEEEEEEECC--------CEEEEEEECTTCSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCeEEECCCCcEEEEEEEEEeCCCCCccccceeEEEEECCCchHHHHHHHHHHHHHHHcCCeeEE
Confidence 367788888 67877888887663211111134899999777666678889999999999987653
No 119
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=33.36 E-value=65 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.+.+.++|. .+.++.|.+.+..++++.
T Consensus 58 ~~~v~I~G~--~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 58 DRIITITGT--QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcC--HHHHHHHHHHHHHHHHhh
Confidence 478899997 788899998888888775
No 120
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=33.34 E-value=57 Score=22.23 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.7
Q ss_pred cEEEEEecCC-------eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 65 RTTALIFSSG-------KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 65 k~t~lIf~SG-------KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.|.+.|-..| .|.|+|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHH
Confidence 3566666777 8999996 677777777777776653
No 121
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=33.24 E-value=76 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=24.9
Q ss_pred EEEEEecCC------eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 66 TTALIFSSG------KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 66 ~t~lIf~SG------KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
|.+.|-..+ .|.|+|. .|.++.|.+.+..++++.
T Consensus 42 akI~I~~~~~~~~er~V~I~G~--~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 42 VRIQFKQDDGTGPEKIAHIMGP--PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp CEEEECSSCSSSSEEEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCceeEEEEEeC--HHHHHHHHHHHHHHHhcc
Confidence 455555433 5889986 788888888888888764
No 122
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.95 E-value=52 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=19.4
Q ss_pred EEEEecCCeEE-EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV-CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv-itGakS~e~a~~a~~k~ 94 (172)
|+.+|.+|++. ..|..+.+++...++++
T Consensus 94 t~~~~~~G~~~~~~g~~~~~~l~~~l~~~ 122 (140)
T 2dj1_A 94 TIKILKKGQAVDYDGSRTQEEIVAKVREV 122 (140)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHHH
T ss_pred eEEEEECCcEEEcCCCCCHHHHHHHHHHh
Confidence 77788999843 36778877766655544
No 123
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=32.69 E-value=70 Score=23.37 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=27.7
Q ss_pred EEEecCCeEEEEeeCC----HHHHHHHHHHHHHHHHHcCC
Q psy17242 68 ALIFSSGKMVCTGAKS----EEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 68 ~lIf~SGKivitGakS----~e~a~~a~~k~~~~L~~~g~ 103 (172)
+.|.++++.++.|--. ..++..++.++++.|++.|+
T Consensus 100 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6667777766665433 45899999999999999885
No 124
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=32.27 E-value=71 Score=23.75 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=45.3
Q ss_pred hCCCcEEcC-cccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCcc
Q psy17242 43 HARNAEYNP-KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKF 107 (172)
Q Consensus 43 ~~~n~~YeP-e~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v~~ 107 (172)
.++.++=+| ..|-=+.+|+..+...-.=+...|.++-|.+..+-=....+++.+.|+++|+.++.
T Consensus 18 ~vP~V~Id~~G~fKYVLi~v~~~~~~~~~~~~~k~iVRG~~~a~yH~diyd~~~~el~~~Gl~~~c 83 (135)
T 2nmm_A 18 LIPDVDIDSDGVFKYVLIRVHSAPRSGAPAAESKEIVRGYKWAEYHADIYDKVSGDMQKQGCDCEC 83 (135)
T ss_dssp GSCSEEECSSSEEEEEEEEEECCC-------CEEEEEEEETTCSSHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCeEEECCCCcEEEEEEEEEeCCCCCCcccceeEEEEECCCccHHHHHHHHHHHHHHHcCCeeEE
Confidence 357788888 68877888888663111001124899999777666678889999999999987653
No 125
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=32.20 E-value=80 Score=18.62 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=24.6
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
|.+.+.+|.|+-+.-++.+.+.|.+ +|.+..
T Consensus 5 I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~ 36 (62)
T 1otf_A 5 LYIIEGRTDEQKETLIRQVSEAMANSLDAPLE 36 (62)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4455667999999999999999987 687643
No 126
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=32.09 E-value=58 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ ..|..+.+++...+++++
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 78889999986 789888887776665543
No 127
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=32.03 E-value=45 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCccccc----------eEEEEEEEee
Q psy17242 83 SEEDSRLAARKYARIIQKLGFPAKFLDF----------KIQNMVGSCD 120 (172)
Q Consensus 83 S~e~a~~a~~k~~~~L~~~g~~v~~~~f----------~v~NIvat~~ 120 (172)
|..+ +.+.+.+.+.|+++|+++....| ...||+|...
T Consensus 44 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 90 (309)
T 3tc8_A 44 TAAH-KACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFD 90 (309)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEEC
Confidence 4544 77888999999999998765554 3689999876
No 128
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=31.62 E-value=63 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.7
Q ss_pred cEEEEEecCC--------eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 65 RTTALIFSSG--------KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 65 k~t~lIf~SG--------KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.+.+.|..+| .+.++| +.+.+..|.+.+..++++.
T Consensus 115 ga~I~i~~~~~~~~~~~~~v~I~G--~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 115 AAEVVVPRDQTPDENDQVIVKIIG--HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CCEEECCTTCCCCTTSEEEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHHHH
Confidence 3678888777 689999 5788999998898888875
No 129
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=30.96 E-value=53 Score=24.40 Aligned_cols=29 Identities=17% Similarity=-0.015 Sum_probs=22.1
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+.+ ..|..+.++....+++.+
T Consensus 195 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 195 KIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 68889999875 679999887776666543
No 130
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=30.87 E-value=47 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=24.2
Q ss_pred ecCCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 71 f~SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+-+|+..+.|+.+.++...+++.++...++
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~~~ 184 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKVRE 184 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 348998889998889988888888776554
No 131
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=30.45 E-value=16 Score=26.52 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=43.5
Q ss_pred cceEEEEEcCCcEEEEEecC-CeEEEEeeC--CHHHHHHHHHHHHHHHHHcCCCCccccceEEEEEEEeecCccccHHHH
Q psy17242 54 FAAVIMRIREPRTTALIFSS-GKMVCTGAK--SEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGL 130 (172)
Q Consensus 54 fpgli~R~~~Pk~t~lIf~S-GKivitGak--S~e~a~~a~~k~~~~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~l 130 (172)
|+--++-+.+++-.++.|.| |.+-.-|++ +...|..|++++++.++++|++ .++-.+-...-+..--|..|
T Consensus 15 ~NNTivtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~------~v~v~vkG~G~Gr~~airaL 88 (117)
T 3r8n_K 15 FNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK------NLEVMVKGPGPGRESTIRAL 88 (117)
T ss_dssp SSCEEEEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHHHHHHHHHHHTTSCCC------EEEEEEECSSSSTTHHHHHH
T ss_pred cCCEEEEEEcCCCCEEEEEcCCccccCCCccCCHHHHHHHHHHHHHHHHHhCCc------EEEEEEeCCCccHHHHHHHH
Confidence 44555666666555555544 666555554 4667888899999999999975 23333333344444445555
Q ss_pred H
Q psy17242 131 V 131 (172)
Q Consensus 131 a 131 (172)
+
T Consensus 89 ~ 89 (117)
T 3r8n_K 89 N 89 (117)
T ss_dssp H
T ss_pred H
Confidence 4
No 132
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=30.06 E-value=51 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCccccc----------eEEEEEEEee
Q psy17242 83 SEEDSRLAARKYARIIQKLGFPAKFLDF----------KIQNMVGSCD 120 (172)
Q Consensus 83 S~e~a~~a~~k~~~~L~~~g~~v~~~~f----------~v~NIvat~~ 120 (172)
|..+ +.+.+.|.+.|+++|+++....| ...||+|+..
T Consensus 46 s~~~-~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~ 92 (314)
T 3gux_A 46 TQAH-KECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYK 92 (314)
T ss_dssp SHHH-HHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEES
T ss_pred CHHH-HHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEEC
Confidence 3444 78888999999999998765554 3589999875
No 133
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=29.76 E-value=62 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=23.2
Q ss_pred EecCCeEEEEeeCCHHHHHHHHHHHHHHHH
Q psy17242 70 IFSSGKMVCTGAKSEEDSRLAARKYARIIQ 99 (172)
Q Consensus 70 If~SGKivitGakS~e~a~~a~~k~~~~L~ 99 (172)
++-+|+.++.|+ +.++...+++.++...+
T Consensus 159 ~ving~~~~~g~-~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 159 IVVNGRYMVTGH-DFEDTLRITDYLVSRER 187 (193)
T ss_dssp EEETTTEEECCS-SHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEecCC-CHHHHHHHHHHHHHHHH
Confidence 334899999999 99999999988876543
No 134
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.70 E-value=45 Score=22.82 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=24.4
Q ss_pred EEEEEecCC----eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 66 TTALIFSSG----KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 66 ~t~lIf~SG----KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
+.+.|=.+| +|.++|.+ . .+..|.+.+..++++.
T Consensus 49 v~I~i~~~g~~~~~V~I~G~~-~-~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 49 VHIHFPVEGSGSDTVVIRGPS-S-DVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CEEECCCTTTTCCEEEEESCH-H-HHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCcceEEEEcCH-H-HHHHHHHHHHHHHhhh
Confidence 344444567 99999973 3 8888888888887765
No 135
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=29.67 E-value=70 Score=24.77 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=29.6
Q ss_pred cCCeEEEEeeCCHHHHHHHHHHHHHHHH----HcCCCCc-cccceE
Q psy17242 72 SSGKMVCTGAKSEEDSRLAARKYARIIQ----KLGFPAK-FLDFKI 112 (172)
Q Consensus 72 ~SGKivitGakS~e~a~~a~~k~~~~L~----~~g~~v~-~~~f~v 112 (172)
..|++.+||- -.+.++++.+++...++ ++|++.+ +.+.+|
T Consensus 36 G~g~~~itG~-~~~~~kES~~~a~s~~~~~~~~~g~~~~~~~~~di 80 (200)
T 1rre_A 36 GKGKLTYTGS-LGEVMQESIQAALTVVRARAEKLGINPDFYEKRDI 80 (200)
T ss_dssp CSSCEEEESS-BCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEE
T ss_pred CCceEEEecC-chHHHHHHHHHHHHHHHHhHHhcCCCcccCCcceE
Confidence 6788999996 45667888888888887 7898755 444443
No 136
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=29.51 E-value=79 Score=21.63 Aligned_cols=29 Identities=24% Similarity=0.092 Sum_probs=20.4
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
.+++|..+|+++ ..|..+.++++..+++.
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 567788999987 56777777666555443
No 137
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=29.44 E-value=48 Score=22.46 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEecCCeEEE--EeeCCHHHHHHHHH
Q psy17242 67 TALIFSSGKMVC--TGAKSEEDSRLAAR 92 (172)
Q Consensus 67 t~lIf~SGKivi--tGakS~e~a~~a~~ 92 (172)
|+.+|.+|+++. .|..+.+++...++
T Consensus 99 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 99 TIILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 677779999875 58888887776654
No 138
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=29.29 E-value=64 Score=25.90 Aligned_cols=31 Identities=10% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCeEE-EEeeCCHHHHHHHHHHHHHHHHH-cCC
Q psy17242 73 SGKMV-CTGAKSEEDSRLAARKYARIIQK-LGF 103 (172)
Q Consensus 73 SGKiv-itGakS~e~a~~a~~k~~~~L~~-~g~ 103 (172)
+||++ ++|+.++.+.+.|++...+.+++ +++
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~~~~~ 115 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIENEAAF 115 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHHTCCE
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 59988 99998999999999999999877 443
No 139
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=29.23 E-value=64 Score=25.24 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=31.0
Q ss_pred cEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCcc
Q psy17242 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKF 107 (172)
Q Consensus 65 k~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v~~ 107 (172)
.+.+.+|-.- |++ ++++.|+....++++.+.|++.|+.+..
T Consensus 193 ~~~v~~Y~DD-ili-~s~~~eeh~~~l~~v~~~L~~~gl~l~~ 233 (255)
T 3fsi_A 193 DLILLQYVDD-LLL-AATSELDCQQGTRALLQTLGNLGYRASA 233 (255)
T ss_dssp TCEEEEETTE-EEE-EESSHHHHHHHHHHHHHHHHHHTCCBCT
T ss_pred CcEEEEEcCC-eEE-EeCCHHHHHHHHHHHHHHHHHCCeEECH
Confidence 3466677665 333 4568999999999999999999987653
No 140
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=29.19 E-value=55 Score=23.07 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=21.8
Q ss_pred EEEEecCCeEEE-----------EeeC-CHHHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMVC-----------TGAK-SEEDSRLAARKYARII 98 (172)
Q Consensus 67 t~lIf~SGKivi-----------tGak-S~e~a~~a~~k~~~~L 98 (172)
|+.+|.+|+.+- .|+. +.++....++++.+..
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 80 TVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp EEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 777889999873 4554 3777777777666543
No 141
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=29.12 E-value=78 Score=21.76 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=22.8
Q ss_pred EEEEEecCCeEEE--EeeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVC--TGAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivi--tGakS~e~a~~a~~k~~ 95 (172)
.+++|-.+|+++- .|..+.++++..+++++
T Consensus 120 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 120 SLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 4677779999965 48888888777777664
No 142
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=29.03 E-value=19 Score=25.32 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=24.1
Q ss_pred EEEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHHHHcCC
Q psy17242 66 TTALIFSSGKMV--CTGAKSEEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 66 ~t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L~~~g~ 103 (172)
-|+++|++|+.+ +.|+.+....+...+.+...|.+.|.
T Consensus 75 PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~ 114 (118)
T 3evi_A 75 PTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGA 114 (118)
T ss_dssp SEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTTS
T ss_pred CEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcCC
Confidence 389999999996 46776432223334455556666664
No 143
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=28.78 E-value=1.1e+02 Score=19.69 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCeEEEEee-CCHHHHHH-HHHHHHHHHH
Q psy17242 63 EPRTTALIFSSGKMVCTGA-KSEEDSRL-AARKYARIIQ 99 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitGa-kS~e~a~~-a~~k~~~~L~ 99 (172)
+|.-++.++-.|+...+|. +|..+|+. |++..++.|+
T Consensus 35 ~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 35 VTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp CEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 3556777778898887774 77777764 4444555443
No 144
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=28.60 E-value=33 Score=24.69 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=27.5
Q ss_pred EEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 69 lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
++|-||-+-+.+..=.++++.+++++..+|+..|..
T Consensus 29 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~ 64 (128)
T 3kjj_A 29 LIFLSGMVPENGETAAEQTADVLAQIDRWLAECGSD 64 (128)
T ss_dssp EEEECCBCCSSCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 577777654433334789999999999999999875
No 145
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=28.59 E-value=52 Score=22.78 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCccccceEEEEEEEeecCccccHHHHHHHcCCCccc----ccCCCceeEEEEcC
Q psy17242 89 LAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSY----EPELFPGLIYRMVK 154 (172)
Q Consensus 89 ~a~~k~~~~L~~~g~~v~~~~f~v~NIvat~~~~f~I~Le~la~~~~~~~~Y----EPE~fPGliyR~~~ 154 (172)
...+++++.|++.|+. .|||=|--+++ -+-.++.|...+....+| +|+.--=.+|++.+
T Consensus 15 kr~~kv~k~L~~yGl~------rvQ~SVFe~~l-t~~~~~~l~~~L~~~i~~~~~~d~~~Dsv~iy~l~~ 77 (101)
T 2ivy_A 15 NLRNRVAEFLKKKGLD------RIQYSVFMGDL-NSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITE 77 (101)
T ss_dssp HHHHHHHHHHHHTTCE------EEETTEEEEEE-CHHHHHHHHHHHHHHTCSCCCSTTCCEEEEEEEECH
T ss_pred HHHHHHHHHHHHhCCh------hccccEEEEEc-CHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEEEeCc
Confidence 5678999999999965 58888888888 677777777766655666 78776667787754
No 146
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.59 E-value=66 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=25.4
Q ss_pred EEEEEecCC----eEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 66 TTALIFSSG----KMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 66 ~t~lIf~SG----KivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
|.+.|-..| .|.++|. .+.+..|.+.+..++++.
T Consensus 48 ~~I~I~~~g~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 48 VNIHVPAPELQSDIIAITGL--AANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEECCCTTTTCCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCcceEEEEcC--HHHHHHHHHHHHHHHhhH
Confidence 455555566 9999997 378888888888877764
No 147
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=28.47 E-value=71 Score=21.38 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=21.1
Q ss_pred EEEEe-cCCeEEE--EeeCCHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMVC--TGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf-~SGKivi--tGakS~e~a~~a~~k~~ 95 (172)
++.++ .+|+++- .|..+.++.+..+++++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45555 8999976 47778888877777654
No 148
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=28.30 E-value=1.5e+02 Score=23.33 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=27.8
Q ss_pred EEcCCcEEEEEecCCeEEEEe-eCCHHHHH-HHHHHHHHHHHH
Q psy17242 60 RIREPRTTALIFSSGKMVCTG-AKSEEDSR-LAARKYARIIQK 100 (172)
Q Consensus 60 R~~~Pk~t~lIf~SGKivitG-akS~e~a~-~a~~k~~~~L~~ 100 (172)
+..+|.-++.++-.|+...+| ++|..+|+ .|++..++.|++
T Consensus 221 ~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 221 RTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 445677788899899887766 45776666 455556666654
No 149
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.20 E-value=47 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHHHHcCC
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L~~~g~ 103 (172)
|+++|.+|+++ .+|.......+...+.+.+.|++.|.
T Consensus 83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~ 121 (135)
T 2dbc_A 83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGA 121 (135)
T ss_dssp EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTS
T ss_pred EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCC
Confidence 78999999986 67775221111122345555666653
No 150
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=28.20 E-value=65 Score=28.05 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=48.4
Q ss_pred cCcccceE----EEEEcCC--c-E------------------EEEEe-cCCeEEEEeeCCHHHHHHHHHHHHHHHH--Hc
Q psy17242 50 NPKRFAAV----IMRIREP--R-T------------------TALIF-SSGKMVCTGAKSEEDSRLAARKYARIIQ--KL 101 (172)
Q Consensus 50 ePe~fpgl----i~R~~~P--k-~------------------t~lIf-~SGKivitGakS~e~a~~a~~k~~~~L~--~~ 101 (172)
.|++|||+ .+|++-| + . .+.+- +.|.|++.|. +.+++... .+.|. +.
T Consensus 85 ~~~~~p~~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv-~~e~l~~i----~~eL~~~~~ 159 (418)
T 3mm5_A 85 LGEQIPEVEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGT-RSEYLQPC----FEDLGNLEI 159 (418)
T ss_dssp TTTTCGGGSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEE-CHHHHHHH----HHHHHHSSS
T ss_pred CCccCCCcceEEEEEEeCCCCcccCHHHHHHHHHHHHHhCCCEEEEecCCCceEeCCC-CHHHHHHH----HHHHhcccc
Confidence 57888884 4688877 2 1 33444 4688999998 56666544 44466 77
Q ss_pred CCCCccccceEEEEEEEee---cC-ccccHHHHHHH
Q psy17242 102 GFPAKFLDFKIQNMVGSCD---VK-FPIRLEGLVLT 133 (172)
Q Consensus 102 g~~v~~~~f~v~NIvat~~---~~-f~I~Le~la~~ 133 (172)
|++..-..-.+.|++|.-- ++ -..|-..++..
T Consensus 160 Gl~~ggsG~~vRni~aC~G~~~C~~a~~Dt~~la~~ 195 (418)
T 3mm5_A 160 PFDIGGSGSDLRTPSACMGPALCEFACYDTLELCYD 195 (418)
T ss_dssp CCCBCCCSSSBCCCEECCGGGTCTTCSSCHHHHHHH
T ss_pred cCCcCCccccccceEecCCcccccchhhhHHHHHHH
Confidence 8875544455788887632 22 23455555544
No 151
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=28.01 E-value=96 Score=20.30 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=20.8
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
+.+.++|. .+.+..|.+.+..++++.
T Consensus 51 r~v~I~G~--~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 51 RRVTITGS--PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcC--HHHHHHHHHHHHHHHhcc
Confidence 58889996 788888888888887653
No 152
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=27.44 E-value=1.1e+02 Score=20.44 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.3
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
+.+.|+|. .+.+..|.+.+..++++.
T Consensus 60 r~v~I~G~--~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 60 RSCMLTGT--PESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEeC--HHHHHHHHHHHHHHHHhc
Confidence 47889996 788888888888888775
No 153
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=27.24 E-value=39 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEEEecCCeE----EEEeeCCHHHHHHHHH
Q psy17242 67 TALIFSSGKM----VCTGAKSEEDSRLAAR 92 (172)
Q Consensus 67 t~lIf~SGKi----vitGakS~e~a~~a~~ 92 (172)
|+.+|.+|+. ..+|..+.++....++
T Consensus 84 t~~~~~~g~~~~~~~~~g~~~~~~l~~~l~ 113 (120)
T 1mek_A 84 TIKFFRNGDTASPKEYTAGREADDIVNWLK 113 (120)
T ss_dssp EEEEEESSCSSSCEECCCCSSHHHHHHHHH
T ss_pred EEEEEeCCCcCCcccccCccCHHHHHHHHH
Confidence 7778899984 5678877776555444
No 154
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=27.20 E-value=1.6e+02 Score=20.70 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=26.7
Q ss_pred CCcEEEEEec-----CCeEEEEe-eCCHHHHH-HHHHHHHHHHHHcCC
Q psy17242 63 EPRTTALIFS-----SGKMVCTG-AKSEEDSR-LAARKYARIIQKLGF 103 (172)
Q Consensus 63 ~Pk~t~lIf~-----SGKivitG-akS~e~a~-~a~~k~~~~L~~~g~ 103 (172)
+|.-++.++- .|++..+| ++|..+|+ .|++..++.|.+.++
T Consensus 55 ~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 55 NRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp TCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455565665 57887777 35666665 566667777877764
No 155
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=26.69 E-value=79 Score=27.81 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=49.4
Q ss_pred cCcccceE----EEEEcCC--c-------------------EEEEEecC-CeEEEEeeCCHHHHHHHHHHHHHHHH-HcC
Q psy17242 50 NPKRFAAV----IMRIREP--R-------------------TTALIFSS-GKMVCTGAKSEEDSRLAARKYARIIQ-KLG 102 (172)
Q Consensus 50 ePe~fpgl----i~R~~~P--k-------------------~t~lIf~S-GKivitGakS~e~a~~a~~k~~~~L~-~~g 102 (172)
.|++||++ .+|++-| + ..+-+-.+ |.|++.|. +.+++... ...|. ++|
T Consensus 87 ~pd~fP~v~~~~tVRV~~P~Gr~lTaeqLR~LadIAekyG~G~irlTt~rqNI~L~gi-~~e~le~l----~~eL~~~~G 161 (437)
T 3or1_A 87 QPEMFPGVAHFHTVRLAQPAAKYYTAEYLEAICDVWDLRGSGLTNMHGSTGDIVLLGT-QTPQLEEI----FFEMTHNLN 161 (437)
T ss_dssp CTTTCGGGSBCCEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEESCCSSSCEEEECC-CGGGHHHH----HHHHHHHSC
T ss_pred CcccCcCcceEEEEEEeCCCCCccCHHHHHHHHHHHHHhCCCEEEEcCccceEEEecC-CHHHHHHH----HHHHHhhcC
Confidence 47888884 5688877 2 13444433 88999998 46665544 44455 788
Q ss_pred CCCccccceEEEEEEEee---cC-ccccHHHHHHHc
Q psy17242 103 FPAKFLDFKIQNMVGSCD---VK-FPIRLEGLVLTH 134 (172)
Q Consensus 103 ~~v~~~~f~v~NIvat~~---~~-f~I~Le~la~~~ 134 (172)
+++.-..-.+.|++|.-- ++ --+|-..++..+
T Consensus 162 l~~ggsG~~vRnivaC~G~~~C~~a~~DT~~la~~L 197 (437)
T 3or1_A 162 TDLGGSGSNLRTPESCLGISRCEFACYDTQLMCYQL 197 (437)
T ss_dssp CCBCCCSSSBCCCEECCGGGSCSSCCSCHHHHHHHH
T ss_pred cCccccCCcceeeeccccccccCccccccchhhhhh
Confidence 876544456789887642 22 235666666543
No 156
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.57 E-value=5.6 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=25.8
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHHHHHHHcC
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYARIIQKLG 102 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~~~L~~~g 102 (172)
|+.+|.+||++ ..|..+.+++...+++...+++..+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~ 127 (137)
T 2dj0_A 90 TLILFQGGKEAMRRPQIDKKGRAVSWTFSEENVIREFN 127 (137)
T ss_dssp EEEEESSSSEEEEESCBCSSSCBCCCCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEecCcCchHHHHHHHhcccchhheee
Confidence 78889999997 7888887776665555555555543
No 157
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=26.30 E-value=69 Score=21.54 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=23.7
Q ss_pred cEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 65 k~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
.|-+.+.-.|. .+.+..+-++.+.|++...+.|++
T Consensus 49 ~~ei~i~~~g~-~l~a~~~~~d~y~Aid~a~dkler 83 (96)
T 3tqm_A 49 IVDANVKLPGS-TINAQAESDDMYKTVDLLMHKLET 83 (96)
T ss_dssp EEEEEEEETTE-EEEEEECCSCHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCc-EEEEEEecCCHHHHHHHHHHHHHH
Confidence 57778888888 455555666777777766666554
No 158
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=26.15 E-value=98 Score=21.11 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=19.7
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
.|.|.|+|. .+++..|.+.+..++++
T Consensus 61 ~~~V~I~G~--~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 61 SRLIKISGT--QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcC--HHHHHHHHHHHHHHHhh
Confidence 688999997 44677787777777754
No 159
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=26.01 E-value=1.2e+02 Score=18.58 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.0
Q ss_pred eCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 81 AKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 81 akS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
.+|.|+-+.-++.+.+.+.+ +|.+..
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~ 39 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKA 39 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 78999999999999999976 787643
No 160
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=25.84 E-value=1.2e+02 Score=21.91 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=40.0
Q ss_pred ceEEEEEcCCcEEEEEecCC---eEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCccccceEEEEEEEe
Q psy17242 55 AAVIMRIREPRTTALIFSSG---KMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSC 119 (172)
Q Consensus 55 pgli~R~~~Pk~t~lIf~SG---KivitGakS~e~a~~a~~k~~~~L~~~g~~v~~~~f~v~NIvat~ 119 (172)
+...+++.. +-.|.++ +++..|....+++..-.+.+.+.++++|++.+. .|+=+--+|-.
T Consensus 69 ~pf~l~l~g----~g~F~~~~~p~vl~~~v~~~~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~ 131 (184)
T 1vgj_A 69 KKHEVKVKG----IGVFPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEG-NFVAHITLGRV 131 (184)
T ss_dssp BCEEEEEEE----EEEEECSSSEEEEEEEEETCHHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEE
T ss_pred CCeEEEEee----EeeCCCCCCCcEEEEEecCCHHHHHHHHHHHHHHHHcCCCCCC-CccceEEEEee
Confidence 444555543 4467764 789888866577888888888889999987654 55544444443
No 161
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=25.67 E-value=97 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=22.7
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~ 95 (172)
.+++|-.+|+++-. |..+.++++..+++++
T Consensus 123 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 123 SIILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 45666689999876 8888888777776654
No 162
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=25.24 E-value=1.3e+02 Score=18.80 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=22.1
Q ss_pred eEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 75 KMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
+|.|| |++..+++.-+..+++.+.++|+.
T Consensus 5 risit-artkkeaekfaailikvfaelgyn 33 (62)
T 2gjh_A 5 RISIT-ARTKKEAEKFAAILIKVFAELGYN 33 (62)
T ss_dssp EEEEE-CSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEE-ecchhHHHHHHHHHHHHHHHhCcc
Confidence 35566 567888887777888888889985
No 163
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=25.02 E-value=59 Score=23.15 Aligned_cols=34 Identities=6% Similarity=-0.099 Sum_probs=26.3
Q ss_pred EEEEe-cCCeEEE--EeeCC-HHHHHHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMVC--TGAKS-EEDSRLAARKYARIIQK 100 (172)
Q Consensus 67 t~lIf-~SGKivi--tGakS-~e~a~~a~~k~~~~L~~ 100 (172)
|..+| .+|+++- .|..+ .++....+++.++..++
T Consensus 133 t~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 133 FYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp EEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 55566 8999964 69988 88888888887776654
No 164
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=24.93 E-value=87 Score=22.79 Aligned_cols=30 Identities=23% Similarity=0.042 Sum_probs=22.9
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~ 95 (172)
.+++|..+|+++-. |..+.+++...+++++
T Consensus 153 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 153 TSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp CEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 68999999999865 6667777766666654
No 165
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=24.80 E-value=68 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=14.6
Q ss_pred cEEcCcccceEEEEEcCCcEEEEEecCC
Q psy17242 47 AEYNPKRFAAVIMRIREPRTTALIFSSG 74 (172)
Q Consensus 47 ~~YePe~fpgli~R~~~Pk~t~lIf~SG 74 (172)
+.|++..| +.+++ .+..+|+|++|
T Consensus 74 vThe~~~f--iyF~~--g~~aiLlfKtg 97 (97)
T 4ds1_A 74 VTHEKGHF--VYFYI--GPLAFLVFKTA 97 (97)
T ss_dssp EEECTTEE--EEEEE--TTEEEEEEECC
T ss_pred EEEcCCcE--EEEEE--CCEEEEEEecC
Confidence 34555543 44454 35788888887
No 166
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=24.75 E-value=93 Score=21.65 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=23.0
Q ss_pred EEEEEecCCeEEEEeeC-CHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCTGAK-SEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivitGak-S~e~a~~a~~k~~ 95 (172)
.+++|=.+|+++-.|.. +.++++..++++.
T Consensus 133 ~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 133 YIVIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 45555599999999998 8888887776653
No 167
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=24.62 E-value=28 Score=24.90 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=25.0
Q ss_pred EEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 69 lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
++|-||-+-+.+..=.++++.+++++..+|+..|..
T Consensus 23 ~lfvSGq~~~d~~d~~~Q~~~~l~nl~~~L~~aG~~ 58 (124)
T 3gtz_A 23 TLWYTGVPENLDADAFEQTANTLAQIDAVLEKQGSS 58 (124)
T ss_dssp EEEEEECCSCTTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 355555443322223688999999999999999875
No 168
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=24.48 E-value=1.3e+02 Score=18.67 Aligned_cols=36 Identities=22% Similarity=0.101 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCeEEEEe-eCCHHHHHH-HHHHHHHHHH
Q psy17242 63 EPRTTALIFSSGKMVCTG-AKSEEDSRL-AARKYARIIQ 99 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitG-akS~e~a~~-a~~k~~~~L~ 99 (172)
+|.-++.++-.|+ ..+| ++|..+|+. |++..+..|+
T Consensus 31 ~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 31 KREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp GCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3566777777887 6666 456666664 4444555543
No 169
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=24.42 E-value=94 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.307 Sum_probs=22.1
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
|.+.++|. +.+++++-++++.+.+++
T Consensus 375 Ghv~~~~~-~~~~~~~~a~~~~~~~~~ 400 (403)
T 3k5i_A 375 GHITVTAP-TMHEAETHIQPLIDVVDR 400 (403)
T ss_dssp EEEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcC-CHHHHHHHHHHHHhhhhh
Confidence 77999986 899999988888888774
No 170
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.17 E-value=1.1e+02 Score=20.55 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
+|-+.+.|. +.|.++.|+-++-++.+.+.|++ +|.+..
T Consensus 54 ~~~~~i~i~------~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~ 92 (113)
T 1hfo_A 54 NPAAFGTLM------SIGGIEPSRNRDHSAKLFDHLNTKLGIPKN 92 (113)
T ss_dssp SSCEEEEEE------ESSSCSHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCeEEEEEE------EecCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 454555554 44567899988889999999986 788654
No 171
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=24.15 E-value=1.4e+02 Score=18.86 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCeEEEEee--CCHHHHHHH-HHHHHHHH
Q psy17242 63 EPRTTALIFSSGKMVCTGA--KSEEDSRLA-ARKYARII 98 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitGa--kS~e~a~~a-~~k~~~~L 98 (172)
+|.-++.++-+|+...+|. +|..+|+.. ++..++.|
T Consensus 33 ~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L 71 (73)
T 3adg_A 33 KSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALREL 71 (73)
T ss_dssp SCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHh
Confidence 4567888888998887774 577777644 44455444
No 172
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=24.10 E-value=1e+02 Score=21.71 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEEEe-cCCeEEEE-eeC--CHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMVCT-GAK--SEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf-~SGKivit-Gak--S~e~a~~a~~k~~ 95 (172)
|+.+| .+|+++-. |.. +.++....+++++
T Consensus 119 t~~~~d~~G~~~~~~G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 119 ELVFIDAEGKQLARMGFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp EEEEECTTCCEEEEECCCTTCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 56666 89998765 777 6777666665543
No 173
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=23.95 E-value=1.4e+02 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=22.2
Q ss_pred EEecCCeEEEEeeCCHHHHHHHHHHHHHHHH-HcCCCC
Q psy17242 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQ-KLGFPA 105 (172)
Q Consensus 69 lIf~SGKivitGakS~e~a~~a~~k~~~~L~-~~g~~v 105 (172)
+...||.++.....+.+++...+ -+.|+ +.|+++
T Consensus 41 TyI~SGNvvF~s~~~~~~l~~~i---e~~l~~~fg~~v 75 (183)
T 2hiy_A 41 SYINSGNIFFTSIDSKAQLVEKL---ETFFAVHYPFIQ 75 (183)
T ss_dssp EETTTTEEEEEECSCHHHHHHHH---HHHHHHHCTTCC
T ss_pred EEEecCCEEEecCCCHHHHHHHH---HHHHHHhcCCCC
Confidence 45789999998766555554444 44444 478765
No 174
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=23.93 E-value=78 Score=21.22 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=20.2
Q ss_pred EEEEecCCe----EEEEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGK----MVCTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGK----ivitGakS~e~a~~a~~k 93 (172)
|+.+|..|+ +...|.++.+++..-+++
T Consensus 95 t~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 95 TMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp EEEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred EEEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 788888875 477899998887765544
No 175
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=23.90 E-value=1.2e+02 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=24.9
Q ss_pred cCCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCC
Q psy17242 72 SSGKMVCTGAKSEEDSRLAARKYARIIQK-LGFP 104 (172)
Q Consensus 72 ~SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~ 104 (172)
.+|-++++| ++.+.+.|++.....+++ +||.
T Consensus 78 g~g~v~i~G--dvsaV~aAvea~~~~~~~~~gf~ 109 (124)
T 3cgi_A 78 FTGAVVLTG--DVSAVEYALKQVTRTLGEMMQFT 109 (124)
T ss_dssp TTTEEEEEE--CHHHHHHHHHHHHHHHHHHHCCE
T ss_pred CEEEEEEEE--CHHHHHHHHHHHHHHHHhccCcE
Confidence 346788898 799999999998888765 6764
No 176
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=23.81 E-value=87 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=19.2
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKY 94 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~ 94 (172)
++++=.+|+++ ..|..+.++....++++
T Consensus 108 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 108 QAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp EEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred EEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 44444899986 57777887777666553
No 177
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=23.76 E-value=1.7e+02 Score=19.67 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCcEEcCcccceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 45 RNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 45 ~n~~YePe~fpgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
+.+.|+++.-..+..=..+-+-....|+.=|. |. +.|+|+.++-++.+.|++.|-.
T Consensus 9 pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~y---Gf-~~e~Ak~~AIef~k~le~~Gr~ 64 (77)
T 3igm_B 9 PGVSWNKRMCAWLAFFYDGASRRSRTFHPKHF---NM-DKEKARLAAVEFMKTVENNGRK 64 (77)
T ss_dssp TTEEEETTTTEEEEEEEETTEEEEEEECCTTH---HH-HHHHHHHHHHHHHHHTCSSSCC
T ss_pred CcEEeecCCceEEEEEecCCeEeeeeechhhc---Cc-CHHHHHHHHHHHHHHHHhcCce
Confidence 44555555433333322333333444443221 22 4589999999999999998854
No 178
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=23.62 E-value=68 Score=20.32 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=17.2
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHH
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARII 98 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L 98 (172)
+.+.++|. .+.+..|.+.+..++
T Consensus 51 ~~v~I~G~--~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 51 RRVTITGS--PAATQAAQYLISQRV 73 (76)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHC
T ss_pred eEEEEEeC--HHHHHHHHHHHHHHH
Confidence 57888996 778887777776654
No 179
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=23.53 E-value=59 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=25.1
Q ss_pred EEEEe-cCCeEE--EEee----------CCHHHHHHHHHHHHHHHHH
Q psy17242 67 TALIF-SSGKMV--CTGA----------KSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 67 t~lIf-~SGKiv--itGa----------kS~e~a~~a~~k~~~~L~~ 100 (172)
|+.+| .+|+++ ..|+ .+.+++...+++++..+..
T Consensus 106 t~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 106 RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp EEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred eEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence 77788 899997 6785 5677777777777665544
No 180
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=23.43 E-value=1.4e+02 Score=23.17 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=33.2
Q ss_pred EEEEcCCcEEEEEecC-CeEEEEeeCCHH------HHHHHHHHHHHHHHHcCCC
Q psy17242 58 IMRIREPRTTALIFSS-GKMVCTGAKSEE------DSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 58 i~R~~~Pk~t~lIf~S-GKivitGakS~e------~a~~a~~k~~~~L~~~g~~ 104 (172)
+++-+..+.=+.|..+ +..++.|.-.++ +++.++.+|++.|.+.|+.
T Consensus 119 ~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~~g~c~~~ve~LadYL~~~Gy~ 172 (179)
T 2jkg_A 119 VATCAKLKGGLHLVKVPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAESSQL 172 (179)
T ss_dssp EEEEEETTEEEEEEEETTTEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEecCCCcEEEEEECCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHcCch
Confidence 4444556666677777 666666665555 9999999999999999975
No 181
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=23.41 E-value=1.7e+02 Score=19.49 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=23.7
Q ss_pred CCcEEEEEecCCeEEEEe-eCCHHHHH-HHHHHHHHHHHH
Q psy17242 63 EPRTTALIFSSGKMVCTG-AKSEEDSR-LAARKYARIIQK 100 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitG-akS~e~a~-~a~~k~~~~L~~ 100 (172)
+|.-++.++-.|+ ..+| ++|..+|+ .|++..++.|.+
T Consensus 46 ~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 46 RKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp SCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence 4567777888887 6666 45666665 455556666654
No 182
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=23.40 E-value=67 Score=23.91 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=21.4
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
|+.+|.+|+++ .+|..+.+++...+++.+
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHV 201 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhC
Confidence 77888999974 568788887776666543
No 183
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=23.11 E-value=41 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=21.3
Q ss_pred cEEEEEecCC----eEEEEeeCCHHHHHHHHHHHHHH
Q psy17242 65 RTTALIFSSG----KMVCTGAKSEEDSRLAARKYARI 97 (172)
Q Consensus 65 k~t~lIf~SG----KivitGakS~e~a~~a~~k~~~~ 97 (172)
.+.+.|-..| .+.++|. . +.+..|.+.+..+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~-~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD-P-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES-S-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC-H-HHHHHHHHHHHHH
Confidence 3556666677 9999998 3 6677776666543
No 184
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=23.10 E-value=65 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.6
Q ss_pred ecCCeEEE--EeeCCHHHHHHHHHHHH
Q psy17242 71 FSSGKMVC--TGAKSEEDSRLAARKYA 95 (172)
Q Consensus 71 f~SGKivi--tGakS~e~a~~a~~k~~ 95 (172)
+-+||..+ .|+.+.++...+++.++
T Consensus 157 vvng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 157 VVNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp EETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred EECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 33999988 89999999888887764
No 185
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=23.04 E-value=93 Score=21.16 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=20.9
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLAARKYA 95 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a~~k~~ 95 (172)
.++|-.+|+++ ..|..+.+++...+++++
T Consensus 110 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 140 (153)
T 2l5o_A 110 SVLIGKKGEILKTYVGEPDFGKLYQEIDTAW 140 (153)
T ss_dssp EEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 44444899996 778888888777766554
No 186
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=60 Score=21.67 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=18.2
Q ss_pred EEEEecCCeEE-EEeeCCHHHHHHHHHH
Q psy17242 67 TALIFSSGKMV-CTGAKSEEDSRLAARK 93 (172)
Q Consensus 67 t~lIf~SGKiv-itGakS~e~a~~a~~k 93 (172)
|+.+|.+|++. ..|..+.+++...+++
T Consensus 80 t~~~~~~G~~~~~~G~~~~~~l~~~l~~ 107 (126)
T 1x5e_A 80 TIYHCKDGEFRRYQGPRTKKDFINFISD 107 (126)
T ss_dssp EEEEEETTEEEECCSCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEeecCCCHHHHHHHHHH
Confidence 67777999952 4577777766555443
No 187
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=22.97 E-value=1.1e+02 Score=24.78 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCC
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQK-LGF 103 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~-~g~ 103 (172)
+|+++++|+-++.+.+.|++...+.+++ +++
T Consensus 82 ~g~~ii~gg~dVs~V~sAve~~~~~~~~~~~~ 113 (230)
T 3io0_A 82 HGIFIVLKAADVSDARRAVEIALKQTDKYLGN 113 (230)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998999999999999999876 454
No 188
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=22.97 E-value=95 Score=23.00 Aligned_cols=29 Identities=17% Similarity=0.055 Sum_probs=23.5
Q ss_pred ecCCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 71 FSSGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 71 f~SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+-+||.+..|+ +.|+...+++.++...++
T Consensus 159 vvng~~~~~~~-~~e~l~~~i~~ll~k~r~ 187 (193)
T 3hz8_A 159 IVGGKYKVEFA-DWESGMNTIDLLADKVRE 187 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHHHHH
Confidence 34899999888 999999998888776543
No 189
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=22.88 E-value=1.4e+02 Score=24.43 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=47.5
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHHcCCCCcc-ccc-----eEEEEEEEeecCccccHHHHHHHcCCCcccccCCCceeE
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKF-LDF-----KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLI 149 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~~g~~v~~-~~f-----~v~NIvat~~~~f~I~Le~la~~~~~~~~YEPE~fPGli 149 (172)
+.++|....-- +.++...|.+.|..+.. ..+ ..=.+...++++...+++.|...+...+. ++ |+.
T Consensus 11 Ltv~c~DrpGI----Va~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~---~l--~m~ 81 (286)
T 3n0v_A 11 LTADCPSMLGT----VDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAERSE---AF--GMA 81 (286)
T ss_dssp EEEEEECCTTH----HHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHHHHG---GG--TCE
T ss_pred EEEEeCCCCCH----HHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHHHHH---Hc--CCE
Confidence 45566644433 44566667777765432 112 11234456666667888888766542221 22 677
Q ss_pred EEEc--CCcEEEEEecCcE
Q psy17242 150 YRMV--KPRIVLLIFVSGK 166 (172)
Q Consensus 150 yR~~--~~k~~~lIF~SGk 166 (172)
+++. +.+.++.||.||.
T Consensus 82 ~~l~~~~~~~ri~vl~Sg~ 100 (286)
T 3n0v_A 82 FELTAPNHRPKVVIMVSKA 100 (286)
T ss_dssp EEEECTTCCCEEEEEESSC
T ss_pred EEeecCCCCcEEEEEEeCC
Confidence 7765 4567889999985
No 190
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=22.87 E-value=46 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.345 Sum_probs=24.8
Q ss_pred EEecCCeEEEEeeCC-HHHHHHHHHHHHHHHHHcCCC
Q psy17242 69 LIFSSGKMVCTGAKS-EEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 69 lIf~SGKivitGakS-~e~a~~a~~k~~~~L~~~g~~ 104 (172)
++|-||-+-+....+ .++++.+++++..+|+..|..
T Consensus 20 ~vfvSGq~~~d~~~d~~~Q~~~~l~ni~~~L~~aG~~ 56 (122)
T 3k12_A 20 TVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSD 56 (122)
T ss_dssp EEEEEEECCSSTTSCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 455555543322122 578999999999999999875
No 191
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=22.83 E-value=77 Score=21.78 Aligned_cols=30 Identities=17% Similarity=-0.026 Sum_probs=21.8
Q ss_pred EEEEEecCCeEEE--EeeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVC--TGAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivi--tGakS~e~a~~a~~k~~ 95 (172)
.+++|-.+|+++- .|..+.+++...++++.
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 139 (151)
T 3raz_A 108 FTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139 (151)
T ss_dssp EEEEEETTTTEEEECCSCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 5777779999954 57878777776666554
No 192
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=22.50 E-value=1.3e+02 Score=20.36 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=27.3
Q ss_pred CCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
+|-+.+.|. +.|.++.|+-+.-++.+.+.|++ +|.+..
T Consensus 55 ~~~~~v~i~------~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~ 93 (115)
T 1uiz_A 55 DPCAVCSLC------SIGKIGGPQNKSYTKLLCDILTKQLNIPAN 93 (115)
T ss_dssp SSCEEEEEE------ESSCCSHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCeEEEEEE------EecCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 444444444 45567899988889999999986 788654
No 193
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=22.40 E-value=1.3e+02 Score=20.56 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 63 EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
+|-+.+.|.. .|.++.|+-+.-++.+.+.|++ +|.+..
T Consensus 55 ~~~~~i~I~~------~~g~~~eqk~~l~~~i~~~l~~~lgi~~~ 93 (119)
T 2os5_A 55 NPVAVIKVES------IGALSADDNIRHTQKITQFCQDTLKLPKD 93 (119)
T ss_dssp SSCEEEEEEE------SSCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred CCeEEEEEEE------ecCCCHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 4555555543 4556899988889999999986 788654
No 194
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=22.37 E-value=31 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred EEEEcCCcEE-EEEecCCeEEEEeeC---CHHHHHHHHHHHHHHHHHcCCC
Q psy17242 58 IMRIREPRTT-ALIFSSGKMVCTGAK---SEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 58 i~R~~~Pk~t-~lIf~SGKivitGak---S~e~a~~a~~k~~~~L~~~g~~ 104 (172)
++-+.++.-. ++.++||-+..-+.+ |.-.|..|++.+++.++++|++
T Consensus 41 iVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~~a~~a~e~Gi~ 91 (151)
T 2xzm_K 41 FIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKIN 91 (151)
T ss_dssp CCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3344455443 566677776655543 4668889999999999999975
No 195
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=22.28 E-value=64 Score=22.93 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=18.4
Q ss_pred EEecCCeEEEEe--eCCHHHHHHHHHHHH
Q psy17242 69 LIFSSGKMVCTG--AKSEEDSRLAARKYA 95 (172)
Q Consensus 69 lIf~SGKivitG--akS~e~a~~a~~k~~ 95 (172)
.+|-+||.++.| +.|.|+....++.++
T Consensus 153 tfiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 153 AVVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp EEEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred EEEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 455699988765 678877766655443
No 196
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=22.13 E-value=31 Score=24.66 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=25.7
Q ss_pred EEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCC
Q psy17242 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 69 lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~ 104 (172)
++|-||-+-..+..=.++++.+++++...|+..|..
T Consensus 24 ~l~vSGq~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~ 59 (126)
T 2ewc_A 24 FYYLNYCVGNVGQDIESQINGAFDEMERRLALVGLT 59 (126)
T ss_dssp EEEEEEECCSTTSCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEeCcCCCCCcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666532223334789999999999999999875
No 197
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=22.05 E-value=1.8e+02 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.3
Q ss_pred eEEEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 75 KMVCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 75 KivitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
.|.+.|.+|.|+-+.-++.+.+.|.+ +|.+..
T Consensus 63 ~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~ 95 (128)
T 1mww_A 63 EINLMAGRMEGTKKRLIKMLFSELEYKLGIRAH 95 (128)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCcChh
Confidence 34455667999999999999999987 888654
No 198
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=21.90 E-value=50 Score=19.84 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.4
Q ss_pred CCeEEEEeeC-CHHHHHHH
Q psy17242 73 SGKMVCTGAK-SEEDSRLA 90 (172)
Q Consensus 73 SGKivitGak-S~e~a~~a 90 (172)
+|+++..|+. +.++.+..
T Consensus 57 ~G~~~~~G~~~~~~~l~~~ 75 (77)
T 1ilo_A 57 DGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp TTEEEECSSCCCHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 8999888997 88876653
No 199
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=21.90 E-value=1.6e+02 Score=20.88 Aligned_cols=39 Identities=5% Similarity=0.111 Sum_probs=30.2
Q ss_pred cEEEEEecCCeEEEEeeC----CHHHHHHHHHHHHHHHHHcCC
Q psy17242 65 RTTALIFSSGKMVCTGAK----SEEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 65 k~t~lIf~SGKivitGak----S~e~a~~a~~k~~~~L~~~g~ 103 (172)
+.-+.|.++++.++.|-- ...++..++.++++.|++.|+
T Consensus 85 ~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 85 KEGIICVATKLCILVSHYPETTLPGEAAKITEALADYLVGVGY 127 (127)
T ss_dssp TEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 445677788887776543 356899999999999999885
No 200
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=21.81 E-value=31 Score=24.10 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=20.8
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~ 95 (172)
.+++|-.+|+++-. |..+.+++...++++.
T Consensus 124 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~ 155 (164)
T 2h30_A 124 SWALIGKDGDVQRIVKGSINEAQALALIRNPN 155 (164)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34555599999754 8888887776666554
No 201
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=21.69 E-value=74 Score=22.12 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=23.2
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~ 95 (172)
.+++|..+|+++-. |..+.+++...+++++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 135 SKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999854 7767777777776654
No 202
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=21.52 E-value=84 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=18.6
Q ss_pred cEEEEEecCCeEEEE---eeCCHHHHHHH
Q psy17242 65 RTTALIFSSGKMVCT---GAKSEEDSRLA 90 (172)
Q Consensus 65 k~t~lIf~SGKivit---GakS~e~a~~a 90 (172)
.-++++|++|+++.. |+-+.++++.+
T Consensus 82 sPq~il~k~G~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 82 SPQAFYFVNGEMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp SSEEEEEETTEEEEEEEGGGCSHHHHHHH
T ss_pred CCeEEEEECCEEEEEeeccccCHHHHHHh
Confidence 358999999999988 44455555443
No 203
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=21.49 E-value=29 Score=27.97 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=27.6
Q ss_pred EEEEc-CCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCCc
Q psy17242 58 IMRIR-EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAK 106 (172)
Q Consensus 58 i~R~~-~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v~ 106 (172)
.|++. .|+-.++|+.+.+.--.+-+....+..=++.+.+.|+++||+|.
T Consensus 12 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~ 61 (259)
T 3sir_A 12 EYNMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVT 61 (259)
T ss_dssp BCCCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEE
T ss_pred cCCCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE
Confidence 34554 46778999999887643333333333345678888899998763
No 204
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=21.42 E-value=1.1e+02 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=27.5
Q ss_pred cEEEEEec------CCeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 65 RTTALIFS------SGKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 65 k~t~lIf~------SGKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.+.+.|.. .+.+.++|. .+..+.|.+.+..++++.
T Consensus 121 g~~I~i~~~~~~~~~~~v~I~G~--~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 121 GVRIQFKQDDGTGPEKIAHIMGP--PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp CCEEEECCCCTTSSEEEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCcEEEEEEcC--HHHHHHHHHHHHHHHhhh
Confidence 36777776 579999996 778888888888887753
No 205
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.22 E-value=1.4e+02 Score=17.66 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=23.5
Q ss_pred EEEeeCCHHHHHHHHHHHHHHHHH-cCCCCc
Q psy17242 77 VCTGAKSEEDSRLAARKYARIIQK-LGFPAK 106 (172)
Q Consensus 77 vitGakS~e~a~~a~~k~~~~L~~-~g~~v~ 106 (172)
.+.+.+|.|+-+.-++.+.+.|.+ +|.+..
T Consensus 7 ~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~ 37 (64)
T 3abf_A 7 TLLEGRPPEKKRELVRRLTEMASRLLGEPYE 37 (64)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344567999888999999999987 787643
No 206
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.20 E-value=1.6e+02 Score=19.60 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=22.8
Q ss_pred EEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 67 TALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 67 t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+++|=.+|+++-... +.++.+..++.+.+.+++
T Consensus 115 ~~lid~~G~i~~~~~-g~~~~~~~l~~l~~~l~~ 147 (148)
T 3hcz_A 115 LYVLDKNKVIIAKRI-GYENLDDFLVQYEKSLKT 147 (148)
T ss_dssp EEEECTTCBEEEESC-CGGGHHHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEecC-CHHHHHHHHHHHHHHhcc
Confidence 344448999987654 567777777777776654
No 207
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial microcompartment; HET: GOL; 1.51A {Clostridium difficile}
Probab=21.17 E-value=1.3e+02 Score=21.87 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHH-cCCC
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQK-LGFP 104 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~-~g~~ 104 (172)
+|-++++| ++.+.+.|++.....+++ +||.
T Consensus 80 ~g~vii~G--DVsaV~aAvea~~~~~~~~~gf~ 110 (125)
T 4axi_A 80 SGSVVISG--DVSSVESALNDVLEVLGNMLNFS 110 (125)
T ss_dssp TCCEEEEE--CHHHHHHHHHHHHHHHHTTSCCB
T ss_pred EEEEEEEE--eHHHHHHHHHHHHHHHhhcCcEE
Confidence 67899999 799999999999998876 5664
No 208
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=20.94 E-value=1.7e+02 Score=18.49 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCcEEEEEecCCeEEEEe-eCCHHHHH-HHHHHHHHHHHH
Q psy17242 63 EPRTTALIFSSGKMVCTG-AKSEEDSR-LAARKYARIIQK 100 (172)
Q Consensus 63 ~Pk~t~lIf~SGKivitG-akS~e~a~-~a~~k~~~~L~~ 100 (172)
+|.-++.+.-+|+.. +| ++|..+|+ .|++..++.|.+
T Consensus 33 ~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 33 APLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 456677888888875 66 45766666 455556665554
No 209
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=20.83 E-value=1.3e+02 Score=21.03 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=15.5
Q ss_pred EEEEecCCeEE--EEeeCCHHHHHHH
Q psy17242 67 TALIFSSGKMV--CTGAKSEEDSRLA 90 (172)
Q Consensus 67 t~lIf~SGKiv--itGakS~e~a~~a 90 (172)
|+.+|.+|+++ ..|. +.+++...
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~ 112 (153)
T 2wz9_A 88 TFLFFKNSQKIDRLDGA-HAPELTKK 112 (153)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHH
Confidence 77888899986 4675 55544333
No 210
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=20.78 E-value=88 Score=25.38 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.4
Q ss_pred CeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 74 GKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 74 GKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
|+++++|. |.++|..=+++.++.|+.
T Consensus 332 ~~vi~~G~-~~~eA~~k~~~al~~i~~ 357 (363)
T 4ffl_A 332 FTMVFWGK-DREETGAKRCKGLSVLKE 357 (363)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence 67888887 788877777777777664
No 211
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=20.78 E-value=18 Score=26.98 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=35.0
Q ss_pred cceEEEEEcCCcEEEE-EecCCeEEEEeeC---CHHHHHHHHHHHHHHHHHcCCC
Q psy17242 54 FAAVIMRIREPRTTAL-IFSSGKMVCTGAK---SEEDSRLAARKYARIIQKLGFP 104 (172)
Q Consensus 54 fpgli~R~~~Pk~t~l-If~SGKivitGak---S~e~a~~a~~k~~~~L~~~g~~ 104 (172)
|+--++-+.++.-..+ -.++|.+-.-|.+ |.-.|..|++.+++.++++|++
T Consensus 23 fNNTivtvTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~ 77 (137)
T 3u5c_O 23 FNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGIT 77 (137)
T ss_dssp TTEEEECCEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCe
Confidence 3444445555554433 4567887666644 5678899999999999999976
No 212
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=20.59 E-value=1.9e+02 Score=21.01 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred EEEecCCeEEEEeeC----CHHHHHHHHHHHHHHHHHcCC
Q psy17242 68 ALIFSSGKMVCTGAK----SEEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 68 ~lIf~SGKivitGak----S~e~a~~a~~k~~~~L~~~g~ 103 (172)
+.|.++++.++.|-- ....+..++.++++.|++.|+
T Consensus 101 v~i~KT~~alvI~~y~e~~~~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 101 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp EEEEECSSEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 667777777666543 356899999999999999885
No 213
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A
Probab=20.56 E-value=66 Score=28.07 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=18.6
Q ss_pred EEEEeeCCHHHHHHHHHHHHH
Q psy17242 76 MVCTGAKSEEDSRLAARKYAR 96 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~ 96 (172)
|.++||+|+++|+.+++.+++
T Consensus 268 v~V~GA~s~~~A~~iA~sIa~ 288 (393)
T 1vz6_A 268 VQVTGARDDAQAKRVGKTVVN 288 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcc
Confidence 678999999999999998763
No 214
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=20.51 E-value=30 Score=28.90 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=32.7
Q ss_pred EEEEcC--CcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCC
Q psy17242 58 IMRIRE--PRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA 105 (172)
Q Consensus 58 i~R~~~--Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v 105 (172)
.|++.. |+..++|+.+.+.--++ +....+..=++.+.+.|+++||+|
T Consensus 52 ~Y~m~~~~~rg~aLIInN~~F~~~~-~~R~Gt~~D~~~L~~~f~~LGF~V 100 (316)
T 2fp3_A 52 TYKMQSRFNRGVLLMVNIMDYPDQN-RRRIGAEKDSKSLIHLFQELNFTI 100 (316)
T ss_dssp BCCCCCSSCSEEEEEEECCCCSSTT-SCCTTHHHHHHHHHHHHHHTTEEE
T ss_pred cccCCCCCCCcEEEEEeCcccCCCC-CCCCCcHHHHHHHHHHHHHCCCEE
Confidence 466643 68899999998765334 455556666677778888888765
No 215
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=20.32 E-value=66 Score=22.87 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=23.5
Q ss_pred EEEEEecCCeEEEE--eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT--GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit--GakS~e~a~~a~~k~~ 95 (172)
.+++|..+|+|+-. |..+.++++..+++++
T Consensus 136 ~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (171)
T 3cmi_A 136 EKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167 (171)
T ss_dssp CEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred eEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999876 6667777777776654
No 216
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=20.29 E-value=1e+02 Score=22.20 Aligned_cols=33 Identities=3% Similarity=0.087 Sum_probs=25.9
Q ss_pred EEEEEec-------CCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 66 TTALIFS-------SGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 66 ~t~lIf~-------SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+.+.|.. .+.+.++| +.+.++.|.+.+..++.+
T Consensus 120 a~I~i~~~~~~~~~~~~v~I~G--~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 120 AQVQVAGDMLPNSTERAITIAG--IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp SEECCCCCCSTTCCEEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCCCCceEEEEEc--CHHHHHHHHHHHHHHHhc
Confidence 5565654 58899999 588999999888888765
No 217
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=20.28 E-value=1.5e+02 Score=21.22 Aligned_cols=30 Identities=17% Similarity=-0.045 Sum_probs=21.9
Q ss_pred EEEEEecCCeEEEE-----------eeCCHHHHHHHHHHHH
Q psy17242 66 TTALIFSSGKMVCT-----------GAKSEEDSRLAARKYA 95 (172)
Q Consensus 66 ~t~lIf~SGKivit-----------GakS~e~a~~a~~k~~ 95 (172)
.+++|-++|+++-. |..+.++++.++++++
T Consensus 133 ~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll 173 (196)
T 2ywi_A 133 DFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALL 173 (196)
T ss_dssp EEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHH
T ss_pred eEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHH
Confidence 35566689999976 5567788877777664
No 218
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=20.27 E-value=1.3e+02 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCeEEEEeeCCHHHHHHHHHHHHHHHHHc
Q psy17242 73 SGKMVCTGAKSEEDSRLAARKYARIIQKL 101 (172)
Q Consensus 73 SGKivitGakS~e~a~~a~~k~~~~L~~~ 101 (172)
.|+++++|+-++.+++.|++.-.+.+.+.
T Consensus 110 ~g~~ii~gg~dVs~V~saVeaa~~~~~~~ 138 (258)
T 4fay_A 110 HGCLIIIGGDDPADARQAIRVALDNLHRT 138 (258)
T ss_dssp BCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHhhh
Confidence 49999999999999999999988888773
No 219
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=20.20 E-value=30 Score=28.20 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=32.9
Q ss_pred EEEEc-CCcEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHHcCCCC
Q psy17242 58 IMRIR-EPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPA 105 (172)
Q Consensus 58 i~R~~-~Pk~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~~g~~v 105 (172)
.|++. .|+..++|+.+.+.--.+.+....+..=++.+.+.|+++||+|
T Consensus 24 ~Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V 72 (272)
T 1m72_A 24 YYNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV 72 (272)
T ss_dssp BCCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE
Confidence 45554 3577899999887642233344555566678888889999876
No 220
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=20.13 E-value=99 Score=25.75 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHc--CCCCccccce---------EEEEEEEee
Q psy17242 83 SEEDSRLAARKYARIIQKL--GFPAKFLDFK---------IQNMVGSCD 120 (172)
Q Consensus 83 S~e~a~~a~~k~~~~L~~~--g~~v~~~~f~---------v~NIvat~~ 120 (172)
|..+ +.|.+.+.+.|+++ |+++...+|. ..||+|+..
T Consensus 57 S~~~-~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~ 104 (330)
T 3pb6_X 57 SPGN-LQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLD 104 (330)
T ss_dssp SHHH-HHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred CHHH-HHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEEC
Confidence 4544 45888999999999 7777665553 589999876
No 221
>3hrg_A Uncharacterized protein BT_3980 with actin-like A fold; NP_812891.1, bacteroides thetaiotaomicron BT_3980; HET: MSE UNL; 1.85A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.10 E-value=2.4e+02 Score=22.41 Aligned_cols=85 Identities=9% Similarity=0.088 Sum_probs=58.7
Q ss_pred EEEEEEEcCCccChHHHHhhCCCcEEcCccc---------------ceEEEEEcCCcEEEEEecCCeEEEEeeCCHHHHH
Q psy17242 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRF---------------AAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSR 88 (172)
Q Consensus 24 NvVas~~l~~~ldL~~la~~~~n~~YePe~f---------------pgli~R~~~Pk~t~lIf~SGKivitGakS~e~a~ 88 (172)
|+|+.+.+...+..- |....++++|-|..- ..+.+-+++-.+.+.+|..||+...=.=+.+.+.
T Consensus 116 ~~v~vy~~~k~l~~~-l~~~f~~~~~~h~~~~ll~~l~~~s~~~~~~~ly~~~~~~~~~i~~f~~~kL~f~NsF~~~~~~ 194 (257)
T 3hrg_A 116 NVVIIFGIDKSTYTF-LNEQYPEARFYSQSTPLIEYFSIKSRLGNSKKMYASVRKDAIDIYCFERGQLLLANSFECMQTE 194 (257)
T ss_dssp TEEEEEEEEHHHHHH-HHHHCTTCEEEETHHHHHHHHHHHTTSSSSCEEEEEECSSEEEEEEEETTEEEEEEEEECCSHH
T ss_pred CEEEEEecCHHHHHH-HHHhCCCcEEEECcHHHHHHHHhhhccCCCcEEEEEEECCEEEEEEEECCEEEEEEeEecCCHH
Confidence 455555554444332 234566777744321 2366677788899999999999988766677777
Q ss_pred HHHHHHHHHHHHcCCCCcccc
Q psy17242 89 LAARKYARIIQKLGFPAKFLD 109 (172)
Q Consensus 89 ~a~~k~~~~L~~~g~~v~~~~ 109 (172)
.++=-++-.++++|++.+...
T Consensus 195 D~lYYlL~v~~QL~ld~e~~~ 215 (257)
T 3hrg_A 195 DRIYYLLYVWKQLEFNQERDE 215 (257)
T ss_dssp HHHHHHHHHHHHTTCCTTTCE
T ss_pred HHHHHHHHHHHHcCCCccccE
Confidence 888899999999999865433
No 222
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=20.01 E-value=2e+02 Score=20.55 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.1
Q ss_pred EEEEeeCCHHHHHHHHHHHHHHHHHcCC
Q psy17242 76 MVCTGAKSEEDSRLAARKYARIIQKLGF 103 (172)
Q Consensus 76 ivitGakS~e~a~~a~~k~~~~L~~~g~ 103 (172)
+.++| +.+.+..|...+...+.+.++
T Consensus 51 v~I~G--~~e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 51 VIITG--PPEAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEc--CHHHHHHHHHHHHHHHhcccc
Confidence 88888 588999999999999988753
No 223
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=20.00 E-value=90 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=22.9
Q ss_pred cEEEEEecCCeEEEEeeCCHHHHHHHHHHHHHHHHH
Q psy17242 65 RTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQK 100 (172)
Q Consensus 65 k~t~lIf~SGKivitGakS~e~a~~a~~k~~~~L~~ 100 (172)
+|.+.+...|..+ .+..+-++.+.|++...+.|++
T Consensus 55 ~~eitv~~~g~~l-~a~~~~~d~y~Aid~a~dkler 89 (105)
T 2ywq_A 55 RAEIQVDLPGGLV-RVEEEDADLYAAIDRAVDRLET 89 (105)
T ss_dssp EEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCcEE-EEEEccCCHHHHHHHHHHHHHH
Confidence 5788888889754 5544566677666666655544
Done!