RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17242
(172 letters)
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus,
transcription; 1.90A {Encephalitozoon cuniculi} PDB:
3oci_A 3oc3_C
Length = 218
Score = 220 bits (562), Expect = 4e-74
Identities = 120/157 (76%), Positives = 136/157 (86%)
Query: 14 DMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 73
+ G +P LQN+V+TVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+S
Sbjct: 37 NRSGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFAS 96
Query: 74 GKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLT 133
GKMV TGAKSE+ SR+AA++YA+II KLGF A F DFKIQN+V SCD+KF IRLEGL
Sbjct: 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYA 156
Query: 134 HGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
H + SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 157 HSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Score = 84.4 bits (208), Expect = 7e-21
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 21 QLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++QNIVS+ ++ + L+ +A H+ Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 134 KIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 193
Query: 80 GAKSEEDSRLAARKYARIIQK 100
GAK +D A ++ +
Sbjct: 194 GAKVRDDIYQAFNNIYPVLIQ 214
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA,
transcription/DNA complex; 2.50A {Saccharomyces
cerevisiae} SCOP: d.129.1.1 d.129.1.1
Length = 240
Score = 213 bits (542), Expect = 7e-71
Identities = 131/155 (84%), Positives = 144/155 (92%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGK 75
G VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGK
Sbjct: 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGK 120
Query: 76 MVCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHG 135
MV TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG
Sbjct: 121 MVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHG 180
Query: 136 QFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
FSSYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 181 TFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 215
Score = 94.4 bits (234), Expect = 2e-24
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 52 KRFAAVIMRIREPRTTAL---IFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL 108
K F + +P T + G T +SEED + AA + +K +
Sbjct: 8 KEFKEANKIVFDPNTRQVWENQNRDGTKPATTFQSEEDIKRAAPE----SEKDTSATSGI 63
Query: 109 DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
+QN+V + + + L+ + L H + + Y P+ F +I R+ +P+ LIF SGK+V
Sbjct: 64 VPTLQNIVATVTLGCRLDLKTVAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKMV 122
Query: 169 LT 170
+T
Sbjct: 123 VT 124
Score = 82.9 bits (204), Expect = 4e-20
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+ LIF SGK+V
Sbjct: 155 FKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVL 214
Query: 79 TGAKSEEDSRLAARKYARIIQKL 101
TGAK E+ A ++ +
Sbjct: 215 TGAKQREEIYQAFEAIYPVLSEF 237
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome
binding, complex (ribosome binding/ DNA); HET: DNA 5IU;
2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB:
1d3u_A* 1pcz_A
Length = 182
Score = 211 bits (537), Expect = 9e-71
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLV 131
SGK+V TGAKS +D A K A+ ++ +G K +QNMV S D+ L+ +
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVA 121
Query: 132 LTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
LT YEPE FPG+IYR+ +P+ V+L+F SGK+V +
Sbjct: 122 LTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCS 159
Score = 92.4 bits (229), Expect = 3e-24
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+VC+G
Sbjct: 101 DVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 160
Query: 81 AKSEEDSRLAARKYARIIQK 100
AKSE D+ A RK R + K
Sbjct: 161 AKSEADAWEAVRKLLRELDK 180
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex,
transcription/DNA complex; HET: DNA; 1.80A
{Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A*
1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A*
1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E*
...
Length = 180
Score = 205 bits (524), Expect = 7e-69
Identities = 130/152 (85%), Positives = 143/152 (94%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
VP LQNIV+TV LGC+LDLK +ALHARNAEYNPKRFAAVIMRIREP+TTALIF+SGKMV
Sbjct: 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVV 63
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
TGAKSE+DS+LA+RKYARIIQK+GF AKF DFKIQN+VGSCDVKFPIRLEGL +HG FS
Sbjct: 64 TGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFS 123
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
SYEPELFPGLIYRMVKP+IVLLIFVSGK+VLT
Sbjct: 124 SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLT 155
Score = 82.3 bits (203), Expect = 2e-20
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 10 MTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTA 68
+ ++QNIV + ++ + L+ +A H + Y P+ F +I R+ +P+
Sbjct: 85 KIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVL 144
Query: 69 LIFSSGKMVCTGAKSEEDSRLAARKYARIIQKL 101
LIF SGK+V TGAK E+ A ++ +
Sbjct: 145 LIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177
Score = 63.9 bits (155), Expect = 2e-13
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
+ +QN+V + + + L+ + L H + + Y P+ F +I R+ +P+ LIF SGK+
Sbjct: 3 IVPTLQNIVATVTLGCRLDLKTVAL-HARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 61
Query: 168 VLT 170
V+T
Sbjct: 62 VVT 64
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding
protein, transcription factor, DNA binding protein;
2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1
d.129.1.1
Length = 198
Score = 205 bits (522), Expect = 2e-68
Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 2/153 (1%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 12 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 71
Query: 79 TGAKSEEDSRLAARKYARIIQKLGFPAKFL-DFKIQNMVGSCDVKFPIRLEGLVLTHGQF 137
TGAKS ++ A ++ + ++K G +IQN+V S ++ + L+
Sbjct: 72 TGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLEN- 130
Query: 138 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+ YEPE FPGLIYRM +PR+VLLIF SGK+V+T
Sbjct: 131 NMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVIT 163
Score = 93.1 bits (231), Expect = 2e-24
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 105 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 164
Query: 81 AKSEEDSRLAARKYARIIQKLGFPAKFLDFKIQ 113
AK E++ A +K + +L + +++
Sbjct: 165 AKREDEVHKAVKKIFDKLVELDCVKPVEEEELE 197
Score = 66.6 bits (162), Expect = 2e-14
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 108 LDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKV 167
I+N+V + + + L + Y+P+ FPGLI+R+ P+I LIF SGK+
Sbjct: 11 AVVNIENIVATVTLDQTLDLYAMER-SVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKM 69
Query: 168 VLT 170
V+T
Sbjct: 70 VVT 72
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein,
transcription factor, transcription regulation; 1.90A
{Methanococcus jannaschii}
Length = 188
Score = 202 bits (516), Expect = 1e-67
Identities = 60/152 (39%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Query: 20 PQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCT 79
++ N+V + +G +DL+++A+ NAEY P++F ++ R+ P+ LIF SGK+ CT
Sbjct: 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCT 72
Query: 80 GAKSEEDSRLAARKYARIIQKLGFP-AKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFS 138
GAKS+E++ +A +K + ++ G + + KIQNMV + D+ L+ + L + +
Sbjct: 73 GAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGT 131
Query: 139 SYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
YEPE FPGL+YR+ P++V+LIF SGKVV+T
Sbjct: 132 EYEPEQFPGLVYRLDDPKVVVLIFGSGKVVIT 163
Score = 92.8 bits (230), Expect = 2e-24
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
++QN+V+T +LG + +L IAL EY P++F ++ R+ +P+ LIF SGK+V TG
Sbjct: 105 KIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITG 164
Query: 81 AKSEEDSRLAARKYARIIQKL 101
KSEED++ A +K I+++
Sbjct: 165 LKSEEDAKRALKKILDTIKEV 185
Score = 67.3 bits (164), Expect = 1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 109 DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
+ KI N+V S + I LE + + + + YEPE FPGL+ R+ P++ LLIF SGKV
Sbjct: 12 EIKIVNVVVSTKIGDNIDLEEVAM-ILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVN 70
Query: 169 LT 170
T
Sbjct: 71 CT 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 27/121 (22%), Positives = 38/121 (31%), Gaps = 51/121 (42%)
Query: 7 GPPMTPVDM----GGSVPQLQNIVSTVNLGCKLDLKK---IALHARNAEYNPKRFAAVIM 59
G P +P M + Q+Q+ V+ N L K I+L N K
Sbjct: 333 GVP-SP--MLSISNLTQEQVQDYVNKTN--SHLPAGKQVEISLV--NG---AKNL----- 377
Query: 60 RIREPRTTALIFSSGKMVCTG-AKSEEDSRLAARKY--------ARII---QKLGFPAKF 107
V +G +S L RK +RI +KL F +F
Sbjct: 378 -----------------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 108 L 108
L
Sbjct: 421 L 421
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 33.6 bits (77), Expect = 0.024
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 16 GGSVPQLQNIVSTVNLGCKLDLKKIALHA---RNAEYNPKRFAAVIMRIREPRTTALIFS 72
G L NI+ +LKK + H NAE + RE LI S
Sbjct: 503 KGGHFSLLNIM--------NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMS 554
Query: 73 SGKMV 77
SGKMV
Sbjct: 555 SGKMV 559
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.14
Identities = 31/172 (18%), Positives = 50/172 (29%), Gaps = 72/172 (41%)
Query: 18 SVPQLQNIVSTVNLGCKLDLKKIALHARNAE-YNPKRFAAVIMRIREPRTTALIFSSGKM 76
S+P + + L KL+ + ALH + YN + F S +
Sbjct: 427 SIPSIY-----LELKVKLE-NEYALHRSIVDHYNIPK----------------TFDSDDL 464
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLG--------------FPAKFLDFK-IQNMVGSCDV 121
D +Y +G F FLDF+ ++
Sbjct: 465 ----IPPYLD------QY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ------- 505
Query: 122 KFPIRLEGLVL--------THGQFSSYEPELFP--GLIYRMVKPRIVLLIFV 163
K IR + T Q Y+P + R+V +L F+
Sbjct: 506 K--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILDFL 552
Score = 31.4 bits (70), Expect = 0.15
Identities = 28/163 (17%), Positives = 43/163 (26%), Gaps = 48/163 (29%)
Query: 24 NIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKS 83
+ NL C KI L R + V + TT + M T +
Sbjct: 257 KAWNAFNLSC-----KILLTTRFKQ--------VTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 84 EEDSRLAARKYARI-IQKL------GFPAKFLDFKIQNMVGSCDVKFPIRLEGLV----- 131
+ L KY Q L P ++ +++ +
Sbjct: 304 KS---LLL-KYLDCRPQDLPREVLTTNP-----RRL-SIIAESIRDGLATWDNWKHVNCD 353
Query: 132 -LTHGQFSSYEPELFPGLIYRM----------VK-PRIVLLIF 162
LT SS L P +M P I+L +
Sbjct: 354 KLTTIIESSLN-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization,
active site conformation, hydrolysis/apoptosis complex;
2.50A {Drosophila melanogaster}
Length = 316
Score = 27.4 bits (60), Expect = 2.5
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 1 MSPSTPGPPMTPVDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMR 60
M+PS V + P L + V + ++KK + M+
Sbjct: 1 MTPSPEASEGPCVSKLRNEP-LGALTPYVGVVDGPEVKKSKKIHGGDSAILGTYK---MQ 56
Query: 61 IREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGF 103
R R L+ + + + ++ + Q+L F
Sbjct: 57 SRFNRGVLLMVNI-MDYPDQNRRRIGAEKDSKSLIHLFQELNF 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 11/29 (37%)
Query: 121 VKFPIRLEG-LVLTHGQFSSYEPELFPGL 148
+K +L+ L L Y + P L
Sbjct: 22 LK---KLQASLKL-------YADDSAPAL 40
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 26.5 bits (59), Expect = 4.8
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 5/52 (9%)
Query: 66 TTALIFSSGKM--VCTGAKSEEDSRLAARKYARIIQ-KLGFPAKFLDFKIQN 114
+ + GA EE +L R + G ++ +
Sbjct: 179 YGEMHACGAACGAILGGAAEEEIQKL--RNFGLYQGTLRGMMEMKNSHQLID 228
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_B
Length = 205
Score = 25.9 bits (58), Expect = 7.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 79 TGAKSEEDSRLAARKYAR 96
TGA +E+D+ +AAR+ AR
Sbjct: 92 TGAATEDDALVAARQIAR 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.406
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,606,987
Number of extensions: 146107
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 25
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)