RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17242
(172 letters)
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 149 bits (377), Expect = 5e-48
Identities = 83/96 (86%), Positives = 89/96 (92%)
Query: 17 GSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKM 76
G VP LQNIVSTVNL CKLDLK IAL ARNAEYNPKRFAAVIMRIREP+TTALIF+SGKM
Sbjct: 4 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKM 63
Query: 77 VCTGAKSEEDSRLAARKYARIIQKLGFPAKFLDFKI 112
VCTGAKSE+ S++AARKYARI+QKLGFPAKF DFKI
Sbjct: 64 VCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
Score = 84.8 bits (210), Expect = 1e-22
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 111 KIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
+QN+V + ++ + L+ + L + + Y P+ F +I R+ +P+ LIF SGK+V T
Sbjct: 8 TLQNIVSTVNLDCKLDLKAIAL-QARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCT 66
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 92
Score = 130 bits (330), Expect = 6e-41
Identities = 37/90 (41%), Positives = 59/90 (65%)
Query: 13 VDMGGSVPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFS 72
VDM +++NIV++V+L +LDL+K+ N++YNP+ F +I + +P+ LIFS
Sbjct: 2 VDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFS 61
Query: 73 SGKMVCTGAKSEEDSRLAARKYARIIQKLG 102
SGK+V TGAKS +D A K A+ ++ +G
Sbjct: 62 SGKLVVTGAKSVQDIERAVAKLAQKLKSIG 91
Score = 92.8 bits (231), Expect = 5e-26
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 106 KFLDFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSG 165
+ +I+N+V S D+ + LE ++ S Y PE FPG+I + P++ LLIF SG
Sbjct: 5 SKVKLRIENIVASVDLFAQLDLEKVLD-LCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63
Query: 166 KVVLT 170
K+V+T
Sbjct: 64 KLVVT 68
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 92
Score = 128 bits (323), Expect = 7e-40
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 19 VPQLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 78
V ++NIV+TV L LDL + N EY+P +F +I R+ P+ T+LIF SGKMV
Sbjct: 8 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 67
Query: 79 TGAKSEEDSRLAARKYARIIQKLG 102
TGAKS ++ A ++ + ++K G
Sbjct: 68 TGAKSTDELIKAVKRIIKTLKKYG 91
Score = 85.5 bits (212), Expect = 3e-23
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 109 DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
I+N+V + + + L + Y+P+ FPGLI+R+ P+I LIF SGK+V
Sbjct: 8 VVNIENIVATVTLDQTLDLYAMER-SVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMV 66
Query: 169 LT 170
+T
Sbjct: 67 VT 68
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 101
Score = 124 bits (313), Expect = 3e-38
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
Q+QNIV++ NL ++L K A N Y P++F +I R+ EPR LIFSSGKMV TG
Sbjct: 9 QIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITG 68
Query: 81 AKSEEDSRLAARKYARIIQKLG 102
AK E++ A +K + +L
Sbjct: 69 AKREDEVHKAVKKIFDKLVELD 90
Score = 91.7 bits (228), Expect = 2e-25
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 109 DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
+IQN+V S ++ + L+ + + YEPE FPGLIYRM +PR+VLLIF SGK+V
Sbjct: 7 KIQIQNIVASANLHVIVNLDKAAF-LLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMV 65
Query: 169 LT 170
+T
Sbjct: 66 IT 67
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 89
Score = 122 bits (307), Expect = 2e-37
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 21 QLQNIVSTVNLGCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 80
+QN+V + ++G + +L +AL N EY P++F VI R++EP++ L+FSSGK+VC+G
Sbjct: 9 DVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSG 68
Query: 81 AKSEEDSRLAARKYARIIQK 100
AKSE D+ A RK R + K
Sbjct: 69 AKSEADAWEAVRKLLRELDK 88
Score = 90.6 bits (225), Expect = 5e-25
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 109 DFKIQNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVV 168
+QNMV S D+ L+ + LT YEPE FPG+IYR+ +P+ V+L+F SGK+V
Sbjct: 7 QIDVQNMVFSGDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIV 65
Query: 169 LT 170
+
Sbjct: 66 CS 67
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 83
Score = 104 bits (262), Expect = 8e-31
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 23 QNIVSTVNLGCKLDLKKIAL-HARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 81
QNIV + ++ + L+ +A HA + Y P+ F +I R++ P+ LIF SGK+V TGA
Sbjct: 1 QNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGA 60
Query: 82 KSEEDSRLAARKYARIIQKL 101
K +++ A ++ +
Sbjct: 61 KMRDETYKAFENIYPVLSEF 80
Score = 90.2 bits (224), Expect = 5e-25
Identities = 47/58 (81%), Positives = 52/58 (89%)
Query: 113 QNMVGSCDVKFPIRLEGLVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLT 170
QN+VGSCDVKFPIRLEGL +H FSSYEPELFPGLIYRM P+IVLLIFVSGK+V+T
Sbjct: 1 QNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVIT 58
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 28.7 bits (62), Expect = 0.35
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 48 EYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEDSRLAARKYARIIQKLGFPAKF 107
++ P R+ R T + F +G+ C G +A + K F
Sbjct: 360 DFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVG-----------AAFAIMQIKAIFSVLL 408
Query: 108 LDFKIQ 113
+++ +
Sbjct: 409 REYEFE 414
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.406
Gapped
Lambda K H
0.267 0.0358 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,907
Number of extensions: 26822
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 13
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (24.1 bits)