BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17243
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 115/274 (41%), Gaps = 36/274 (13%)
Query: 11 WQMNSHELQ------STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
W+ H LQ T +G V C+ I VSG DNT K+W
Sbjct: 116 WRCGRHSLQRIHCRSETSKG----VYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRIL 169
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
H ++L + D R ++T + VW + ++L + + C V H N
Sbjct: 170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGM 225
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
+V+ D S+ +W + T R V H + V +D +Y+++ S D ++KVW
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNT 283
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
+ + L GH ++C+ LVVSGS D+ + +WD+E G L GH V
Sbjct: 284 STCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340
Query: 242 CVKL--------AGDGTVAMSD----LPPSRPAG 263
C++ A DG + + D L P PAG
Sbjct: 341 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 374
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 16/250 (6%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + +W N+ E + + GH +V C+ I ++GS D+T +VW + G ++
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI--ITGSSDSTVRVWDVNTGEML 206
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW---VADNAQLLYSALGPSKCLTVT-H 117
+T H +L + ++ +VT K IAVW + L +G + V
Sbjct: 207 NTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264
Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ KYIVS GD ++++W TS R H I C + + + +++GS D +++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFV---RTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 319
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL 237
+W + G +VL GH + V C+ + +VSG+ D + VWD+ + AG L
Sbjct: 320 LWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376
Query: 238 GCVTCVKLAG 247
T V+ +G
Sbjct: 377 CLRTLVEHSG 386
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + VW + E T+ GH +TV C+ + + VSGS D T +VW + G +
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV--VSGSRDATLRVWDIETGQCL 232
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG-PSKCLTVTHNMK 120
H + + V D RRVV+ ++ VW + L++ G ++ ++ +
Sbjct: 233 HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 290
Query: 121 YIVSGDGDNSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
++VSG D S+R+W T H +++ E+ L++G+ D ++K+
Sbjct: 291 HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-------KDNILVSGNADSTVKI 343
Query: 179 WQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
W + G+ Q L G H S V NK+ V++ S D + +WD++TG
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 392
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 18/230 (7%)
Query: 11 WQMNSHELQSTMEGHLN-TVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS 69
W+ + ++GH + ++C+ N I VSGS+DNT KVW G + T H
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGD 128
+ + + + +++ + VW A+ + +++ G + + H + K +VSG D
Sbjct: 161 GVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 218
Query: 129 NSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL 186
+LR+W T H + H + C V +D + +++G+ D +KVW
Sbjct: 219 ATLRVWDIETGQCLH-----VLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
L GHT+ V + + VVSGS D+++ VWD+ETG H L GH
Sbjct: 272 LHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGH 318
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY----L 167
CL N IVSG DN+L++W S T K R V H+ + W SQ +
Sbjct: 124 CLQFCGNR--IVSGSDDNTLKVW--SAVTGKC-LRTLVGHTGGV------WSSQMRDNII 172
Query: 168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
I+GS D +LKVW G+ L GHT V C+ + ++ VVSGS+D+ L VWD+ETG
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETG 229
Query: 228 GEEHFLAGHLGCVTCVKLAGDGTVA 252
H L GH+ V CV+ G V+
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRRVVS 254
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEG---HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG 58
G D V +W + + + T++G H + V+C+ + N F ++ S+D T K+W L G
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
Query: 59 SVVSTFKSHQS 69
+ + +S
Sbjct: 393 EFIRNLVTLES 403
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 110 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 230 YILAATLDNTLKLWDYS--KGKCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 285
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVV 306
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 15/245 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 68 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 241
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 236 HLGCV 240
H V
Sbjct: 302 HTDVV 306
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 89
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 148
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 190
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 295
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTS--DKAGVIAVWVAD 98
V + H +++ A + ++ + I +W +D
Sbjct: 296 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 279 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 228 YILAATLDNTLKLWDYS--KGKCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 283
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVV 304
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 15/245 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 66 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 239
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 236 HLGCV 240
H V
Sbjct: 300 HTDVV 304
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 87
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 146
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 293
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTS--DKAGVIAVWVAD 98
V + H +++ A + ++ + I +W +D
Sbjct: 294 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 277 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 223
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 236 H 236
H
Sbjct: 284 H 284
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 278 VQKLQGHTDVVISTA 292
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 220
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 236 H 236
H
Sbjct: 281 H 281
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95 WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
+V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+V
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
SGS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 275 VQKLQGHTDVVISTA 289
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K++
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 103 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 223 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 278
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVV 299
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 61 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 234
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 236 H 236
H
Sbjct: 295 H 295
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 82
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 141
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 183
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 289 VQKLQGHTDVVISTA 303
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 272 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 220
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 236 H 236
H
Sbjct: 281 H 281
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95 WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
+V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+V
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
SGS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 275 VQKLQGHTDVVISTA 289
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K++
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 223
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 236 H 236
H
Sbjct: 284 H 284
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 278 VQKLQGHTDVVISTA 292
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 92 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 212 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 267
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVV 288
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 223
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 236 H 236
H
Sbjct: 284 H 284
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 71
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 278 VQKLQGHTDVVISTA 292
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 220
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 236 H 236
H
Sbjct: 281 H 281
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 7/163 (4%)
Query: 95 WVADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
+V N L ++ G +K ++ + N +++ + D ++IW E+ H
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF---EKTISGH 67
Query: 152 SEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV 211
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+V
Sbjct: 68 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 126
Query: 212 SGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
SGS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 275 VQKLQGHTDVVISTA 289
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 91 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 211 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 266
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVV 287
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 49 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 222
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 236 H 236
H
Sbjct: 283 H 283
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 70
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 129
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 171
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 277 VQKLQGHTDVVISTA 291
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 260 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 82 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 202 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 257
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 258 YIWNLQTKEIVQKLQGHTDVV 278
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 40 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 159
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 213
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 236 H 236
H
Sbjct: 274 H 274
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 61
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 120
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 267
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 268 VQKLQGHTDVVISTA 282
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 206 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 261
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVV 282
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 217
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 236 H 236
H
Sbjct: 278 H 278
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 65
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 272 VQKLQGHTDVVISTA 286
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 85 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 205 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 260
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVV 281
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 43 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 216
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 236 H 236
H
Sbjct: 277 H 277
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 8 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 64
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 123
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 165
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 270
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 271 VQKLQGHTDVVISTA 285
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 206 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 261
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVV 282
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 217
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 236 H 236
H
Sbjct: 278 H 278
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 65
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 272 VQKLQGHTDVVISTA 286
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 87 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 207 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNLV 262
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 263 YIWNLQTKEIVQKLQGHTDVV 283
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 45 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W + L + S ++ H +
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 218
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 236 H 236
H
Sbjct: 279 H 279
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L ++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 66
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 125
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 167
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 273 VQKLQGHTDVVISTA 287
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D LV +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 256 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN+L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 209 YILAATLDNTLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNMV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W L + S ++ H +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D +LK
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNTLK 220
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 236 H 236
H
Sbjct: 281 H 281
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L+++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 68
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLTLGSV 60
+D + +W + + T GH N C+ + + VSGSEDN +W L +
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Query: 61 VSTFKSHQSTILAVA 75
V + H +++ A
Sbjct: 275 VQKLQGHTDVVISTA 289
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D +V +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 12/201 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W ++S + T++GH N V C +P S VSGS D + ++W + G + T
Sbjct: 89 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG----PSKCLTVTHNMK 120
+H + AV D +V+S G+ +W + Q L + + P + + N K
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC----FTVTWDSQYLITGSRDMSL 176
YI++ DN L++W S K + +T H E C F+VT +++++GS D +
Sbjct: 209 YILAATLDNDLKLWDYSKG--KCLKTYT-GHKNEKYCIFANFSVT-GGKWIVSGSEDNMV 264
Query: 177 KVWQVVGGKLAQVLVGHTDHV 197
+W + ++ Q L GHTD V
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVV 285
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 15/241 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D L+ +W + + T+ GH +S VA S +S VS S+D T K+W ++ G + T
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKY 121
K H + + S +V+ + +W L + S ++ H +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 122 IVSGDGDNSLRIWPTSP----QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
IVS D RIW T+ +T DD+ VS + + + +Y++ + D LK
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK------FSPNGKYILAATLDNDLK 220
Query: 178 VWQVVGGKLAQVLVGHTDHVSCV--AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+W GK + GH + C+ +VT +VSGS+D+ + +W+++T L G
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 236 H 236
H
Sbjct: 281 H 281
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 96 VADNAQLLYSALGPSKCLT---VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHS 152
V N L+++ G +K ++ + N +++ S D ++IW E+ H
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---EKTISGHK 68
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
I+ + DS L++ S D +LK+W V GK + L GH+++V C +L+VS
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
GS D ++ +WD++TG L H V+ V DG++ +S
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
G D +V +W + + E+ ++GH + V A P N I + + D T K+W
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 13/248 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D V +W N LQ T+ GH ++V VA SP+ S S+D T K+W G ++ T
Sbjct: 78 DKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 135
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC---LTVTHNMKY 121
H S++ VA D + + ++ + +W N QLL + G S + + + +
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D ++++W + Q + HS + + D Q + + S D ++K+W
Sbjct: 195 IASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 249
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
G+L Q L GH+ V+ VA ++ + S S D + +W+ G L GH V
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAFRPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307
Query: 242 CVKLAGDG 249
V + DG
Sbjct: 308 GVAFSPDG 315
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 13/248 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D V +W N LQ T+ GH ++V VA SP+ S S+D T K+W G ++ T
Sbjct: 37 DKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 94
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKC---LTVTHNMKY 121
H S++ VA D + + ++ + +W N QLL + G S + + + +
Sbjct: 95 TGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQT 153
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D ++++W + Q + HS + + D Q + + S D ++K+W
Sbjct: 154 IASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 208
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
G+L Q L GH+ V VA + ++ + S S D + +W+ G L GH V
Sbjct: 209 RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVN 266
Query: 242 CVKLAGDG 249
V DG
Sbjct: 267 GVAFRPDG 274
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 13/248 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D V +W N LQ T+ GH ++V VA SP+ S S+D T K+W G + T
Sbjct: 283 DKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTL 340
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKY 121
H S++ VA D + + ++ + +W N QLL + G S + + + + +
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D ++++W + Q + HS + + D Q + + S D ++K+W
Sbjct: 400 IASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN- 454
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
G+L Q L GH+ V VA + ++ + S S D + +W+ G L GH V
Sbjct: 455 RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 242 CVKLAGDG 249
V + DG
Sbjct: 513 GVAFSPDG 520
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 12/222 (5%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D V +W N LQ T+ GH ++V VA SP+ S S+D T K+W G ++ T
Sbjct: 365 DKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL 422
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKY 121
H S++ VA D + + ++ + +W N QLL + G S + + + + +
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQT 481
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D ++++W + Q + HS + + D Q + + S D ++K+W
Sbjct: 482 IASASDDKTVKLWNRNGQL----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 536
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
G+L Q L GH+ V VA + ++ + S S D + +W+
Sbjct: 537 RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKLWN 577
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 12/231 (5%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+E H ++V VA SP+ S S+D T K+W G ++ T H S++ VA D +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIWPTSP 138
+ ++ + +W N QLL + G S + + + + + I S D ++++W +
Sbjct: 71 TIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 139 QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVS 198
Q + HS + + D Q + + S D ++K+W G+L Q L GH+ V
Sbjct: 130 QL----LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 184
Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
VA + ++ + S S D + +W+ G L GH V V + DG
Sbjct: 185 GVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 233
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 5 DCLVNVWQMNSHEL-----QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
D + +W++ E Q + GH + VS V IS + FA+SGS D T ++W LT G+
Sbjct: 37 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 96
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
F H +L+VA SD+R++V+ + I +W + LG
Sbjct: 97 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---------NTLGVC--------- 138
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLK 177
KY V DE SHSE ++C F+ + +++ D +K
Sbjct: 139 KYTVQ-------------------DE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
VW + KL +GHT +++ V V+ + SL SG KD ++WD+ G + L G
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 49/189 (25%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
G D LV VW + + +L++ GH ++ V +SP+ SG +D A +W L G
Sbjct: 169 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---- 224
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVI-AVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+ + T D +I A+ + N L +A GP
Sbjct: 225 ------------------KHLYTLDGGDIINALCFSPNRYWLCAATGP------------ 254
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTV----SHSEEITCFTVTW--DSQYLITGSRDMS 175
S++IW + D+ + V S +E C ++ W D Q L G D
Sbjct: 255 --------SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Query: 176 LKVWQVVGG 184
++VWQV G
Sbjct: 307 VRVWQVTIG 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 25/243 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + +W + + GH V VA S ++ VSGS D T K+W TLG
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCK 139
Query: 62 STFK--SHQSTILAVAVLSDSRR--VVTSDKAGVIAVWVADNAQLLYSALGPSKCL---T 114
T + SH + V +S +V+ ++ VW N +L + +G + L T
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 199
Query: 115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT--CFTVTWDSQYLITGSR 172
V+ + SG D +W + H +T+ + I CF+ ++Y + +
Sbjct: 200 VSPDGSLCASGGKDGQAMLWDLNEGKH----LYTLDGGDIINALCFS---PNRYWLCAAT 252
Query: 173 DMSLKVWQVVG----GKLAQVLVGHTDHVS---CVAVAVT-NKSLVVSGSKDSNLIVWDM 224
S+K+W + G +L Q ++ + C ++A + + + +G D+ + VW +
Sbjct: 253 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Query: 225 ETG 227
G
Sbjct: 313 TIG 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 167 LITGSRDMSLKVWQVVG-----GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+++ SRD ++ +W++ G + L GH+ VS V ++ ++ +SGS D L +
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRL 89
Query: 222 WDMETGGEEHFLAGHLGCVTCVKLAGD 248
WD+ TG GH V V + D
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM---ET--GGEEHFLAGHLGCV 240
L L GH V+ +A +++S S+D +I+W + ET G + L GH V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 241 TCVKLAGDGTVAMS 254
+ V ++ DG A+S
Sbjct: 67 SDVVISSDGQFALS 80
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 49/238 (20%)
Query: 5 DCLVNVWQMNSHEL-----QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
D + +W++ E Q + GH + VS V IS + FA+SGS D T ++W LT G+
Sbjct: 60 DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
F H +L+VA SD+R++V+ + I +W + LG
Sbjct: 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---------NTLGVC--------- 161
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLK 177
KY V DE SHSE ++C F+ + +++ D +K
Sbjct: 162 KYTVQ-------------------DE----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
VW + KL +GHT +++ V V+ + SL SG KD ++WD+ G + L G
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 49/189 (25%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
G D LV VW + + +L++ GH ++ V +SP+ SG +D A +W L G
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---- 247
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVI-AVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+ + T D +I A+ + N L +A GP
Sbjct: 248 ------------------KHLYTLDGGDIINALCFSPNRYWLCAATGP------------ 277
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDER----FTVSHSEEITCFTVTW--DSQYLITGSRDMS 175
S++IW + D+ + T S +E C ++ W D Q L G D
Sbjct: 278 --------SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Query: 176 LKVWQVVGG 184
++VWQV G
Sbjct: 330 VRVWQVTIG 338
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 25/243 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + +W + + GH V VA S ++ VSGS D T K+W TLG
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCK 162
Query: 62 STFK--SHQSTILAVAVLSDSRR--VVTSDKAGVIAVWVADNAQLLYSALGPSKCL---T 114
T + SH + V +S +V+ ++ VW N +L + +G + L T
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT 222
Query: 115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT--CFTVTWDSQYLITGSR 172
V+ + SG D +W + H +T+ + I CF+ ++Y + +
Sbjct: 223 VSPDGSLCASGGKDGQAMLWDLNEGKH----LYTLDGGDIINALCFS---PNRYWLCAAT 275
Query: 173 DMSLKVWQVVG----GKLAQVLVGHTDHVS---CVAVAVT-NKSLVVSGSKDSNLIVWDM 224
S+K+W + G +L Q ++ + C ++A + + + +G D+ + VW +
Sbjct: 276 GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Query: 225 ETG 227
G
Sbjct: 336 TIG 338
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 167 LITGSRDMSLKVWQVVG-----GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+++ SRD ++ +W++ G + L GH+ VS V ++ ++ +SGS D L +
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWDGTLRL 112
Query: 222 WDMETGGEEHFLAGHLGCVTCVKLAGD 248
WD+ TG GH V V + D
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM---ET--GGEEHFLAGHLGCV 240
L L GH V+ +A +++S S+D +I+W + ET G + L GH V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 241 TCVKLAGDGTVAMS 254
+ V ++ DG A+S
Sbjct: 90 SDVVISSDGQFALS 103
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 44/208 (21%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+EGH VS VA+S N FAVS S D++ ++W L G F H +L+VA D+R
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTH 141
++V SG DN+LR+W +
Sbjct: 123 QIV---------------------------------------SGGRDNALRVWNVKGECM 143
Query: 142 KDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC 199
R +H++ ++C F+ + D+ +++G D +KVW + G+L L GHT++V+
Sbjct: 144 HTLSRG--AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 200 VAVAVTNKSLVVSGSKDSNLIVWDMETG 227
V V+ + SL S KD +WD+ G
Sbjct: 202 VTVS-PDGSLCASSDKDGVARLWDLTKG 228
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 5/144 (3%)
Query: 113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR 172
+ +++N + VS D+SLR+W + Q + +F + H++++ + D++ +++G R
Sbjct: 73 VALSNNGNFAVSASWDHSLRLW--NLQNGQCQYKF-LGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 173 DMSLKVWQVVGGKLAQVLVG-HTDHVSCVAVAVT-NKSLVVSGSKDSNLIVWDMETGGEE 230
D +L+VW V G + + G HTD VSCV + + + ++VSG D+ + VWD+ TG
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 231 HFLAGHLGCVTCVKLAGDGTVAMS 254
L GH VT V ++ DG++ S
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCAS 213
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD------ERFTVSHSEEITCFTVTWDSQ 165
C +VS D +L W +P H + +R HS ++ ++ +
Sbjct: 21 CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGN 80
Query: 166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
+ ++ S D SL++W + G+ +GHT V VA + N+ +VSG +D+ L VW+++
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK 139
Query: 226 TGGEEHFLA--GHLGCVTCVKLA 246
G H L+ H V+CV+ +
Sbjct: 140 -GECMHTLSRGAHTDWVSCVRFS 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
GG D LV VW + + L + ++GH N V+ V +SP+ S +D A++W LT G +
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---------KC 112
S + + S +R + + I ++ +N ++ L P +C
Sbjct: 232 SEMAA--GAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVE-LAPEHQGSKKIVPEC 288
Query: 113 LTV--THNMKYIVSGDGDNSLRIWPTS 137
+++ + + + SG DN +R+W S
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 79/231 (34%), Gaps = 64/231 (27%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNT------------------ 49
+ +W + + + Q GH V VA SP++ VSG DN
Sbjct: 91 LRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA 150
Query: 50 ---------------------------AKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRR 82
KVW L G +V+ K H + + +V V D
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 83 VVTSDKAGVIAVW----------VADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLR 132
+SDK GV +W +A A + P++ K I D +N
Sbjct: 211 CASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDI 270
Query: 133 IWPTSPQTHKDDERFTVSHSEEITCFTVTW--DSQYLITGSRDMSLKVWQV 181
I +P+ H+ ++ C ++ W D L +G D ++VW V
Sbjct: 271 IVELAPE-HQGSKKIVPE------CVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 22/238 (9%)
Query: 29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
+ V SP+ F +G+ED ++W + +V + H+ I ++ ++V+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 89 AGVIAVWVADNAQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS-----PQT 140
+ +W Q L G + + KYI +G D ++R+W + +
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG------------GKLAQ 188
++E T H + + T D Q +++GS D S+K+W + G
Sbjct: 246 DSENESGT-GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 189 VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLA 246
+GH D V VA N ++SGSKD ++ WD ++G L GH V V +A
Sbjct: 305 TYIGHKDFVLSVAT-TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 42/217 (19%)
Query: 19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
Q + GH + V V +S + FA+SGS D ++W L G F H +L+VA
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 79 DSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSP 138
D+R++V++ + I +W + LG +C KY +S G+
Sbjct: 483 DNRQIVSASRDRTIKLW---------NTLG--EC-------KYTISEGGE---------- 514
Query: 139 QTHKDDERFTVSHSEEITC--FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDH 196
H + ++C F+ +++ S D ++KVW + KL L GHT +
Sbjct: 515 -----------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL 233
VS VAV+ + SL SG KD +++WD+ G + + L
Sbjct: 564 VSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSL 599
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 42/242 (17%)
Query: 18 LQSTMEGHLNTVSCVAIS-PNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV 76
L+ TM H + V+ +A N+ VS S D + +W LT K ++ +A
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLT--------KDDKAYGVAQRR 425
Query: 77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPT 136
L+ V + ++ + ++ +SG D LR+W
Sbjct: 426 LTGHSHFVED--------------------------VVLSSDGQFALSGSWDGELRLWDL 459
Query: 137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG---KLAQVLVGH 193
+ RF V H++++ + D++ +++ SRD ++K+W +G +++ GH
Sbjct: 460 AAGVST--RRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Query: 194 TDHVSCVAVAV-TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVA 252
D VSCV + T + +VS S D + VW++ LAGH G V+ V ++ DG++
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 253 MS 254
S
Sbjct: 577 AS 578
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 23 EGHLNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
EGH + VSCV SPN++ VS S D T KVW L+ + ST H + VAV D
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPS--KCLTVTHNMKYIVSGDGDNSLRIWPTSP 138
+ K GV+ +W + LYS S L + N +Y + ++ ++IW
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKIWDLES 632
Query: 139 QTHKDDERFTVSHSEE--------------ITCFTVTW--DSQYLITGSRDMSLKVWQV 181
++ +D + + E I C ++ W D L +G D ++VW +
Sbjct: 633 KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 34/259 (13%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + VW + + + T++GH ++V ++ + S S D T K+W + T
Sbjct: 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV---THNMKY 121
H + +V+++ + +V++ + I +W + + G + + + +
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 248
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY--------------- 166
I S D ++R+W + + K + R H + C + +S Y
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 167 -----LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
L++GSRD ++K+W V G LVGH + V V K ++S + D L V
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRV 364
Query: 222 WDMET-------GGEEHFL 233
WD + EHF+
Sbjct: 365 WDYKNKRCMKTLNAHEHFV 383
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 25/255 (9%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+ GH + V+ V P VS SED T KVW G T K H ++ ++ +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKYIVSGDGDNSLRIWPTSP 138
+ + I +W + + + G +++ N +IVS D ++++W
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV-- 221
Query: 139 QTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVS 198
QT + FT H E + D + + S D +++VW V + L H V
Sbjct: 222 QTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 199 CVAVA--------------VTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGC 239
C++ A T KS ++SGS+D + +WD+ TG L GH
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 240 VTCVKLAGDGTVAMS 254
V V G +S
Sbjct: 341 VRGVLFHSGGKFILS 355
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 62/196 (31%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS--------------------IFAVSG 44
D V VW + + E ++ + H + V C++ +P S F +SG
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 45 SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY 104
S D T K+W ++ G + T H + + V L+
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----------------------------LF 346
Query: 105 SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDS 164
+ G K+I+S D +LR+W +K + +H +T +
Sbjct: 347 HSGG-----------KFILSCADDKTLRVWDYK---NKRCMKTLNAHEHFVTSLDFHKTA 392
Query: 165 QYLITGSRDMSLKVWQ 180
Y++TGS D ++KVW+
Sbjct: 393 PYVVTGSVDQTVKVWE 408
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + +W +++ T+ GH N V V F +S ++D T +VW +
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
T +H+ + ++ + VVT + VW
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 109/278 (39%), Gaps = 69/278 (24%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + V+ + + + GH V + + I VSGS D T +VW + G
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKGCCT 196
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--NM 119
F+ H ST+ +CL + N+
Sbjct: 197 HVFEGHNSTV---------------------------------------RCLDIVEYKNI 217
Query: 120 KYIVSGDGDNSLRIWPTSPQT----HKDDERF-TVSHSEEITCF-------------TVT 161
KYIV+G DN+L +W ++ H ++ + V H+ E + TV+
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS 277
Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+++GS D +L VW V K +L GHTD + + + +S S D+ + +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS-TIYDHERKRCISASXDTTIRI 336
Query: 222 WDMETGGEEHFLAGHLGCVTCVKL--------AGDGTV 251
WD+E G + L GH V ++L A DG++
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 17/200 (8%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+ GH +V V+ N + VSGS DNT VW + + H I + + +
Sbjct: 266 LRGHXASVRTVSGHGNIV--VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQT 140
R +++ I +W +N +L Y+ G + + + + K++VS D S+R W + +
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Query: 141 HKDDERFTVSHSE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL--AQVLVGHTDH 196
K F+ H+ IT F V+ L++GS + ++ + GKL A +L D
Sbjct: 384 RK----FSYHHTNLSAITTFYVS--DNILVSGSENQ-FNIYNLRSGKLVHANIL---KDA 433
Query: 197 VSCVAVAVTNKSLVVSGSKD 216
+V K+LV + KD
Sbjct: 434 DQIWSVNFKGKTLVAAVEKD 453
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+T + H ++++ D+ V+T I V+ + N + L G + +KY
Sbjct: 115 TTLRGHXTSVITCLQFEDNY-VITGADDKXIRVYDSINKKFLLQLSGHDGGVWA---LKY 170
Query: 122 -----IVSGDGDNSLRIWPTSPQ--THKDDERFTVSHSEEITCFTVTW--DSQYLITGSR 172
+VSG D ++R+W TH + H+ + C + + +Y++TGSR
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 173 DMSLKVWQVV--------GGKLAQVLVGHT------------DHVSCVAVAVTNKSLVVS 212
D +L VW++ G + LV HT H + V + ++VVS
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVT----------CVKLAGDGTVAMSDL 256
GS D+ LIVWD+ + L+GH + C+ + D T+ + DL
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 110/278 (39%), Gaps = 69/278 (24%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D ++ V+ + + + GH V + + I VSGS D T +VW + G
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL-VSGSTDRTVRVWDIKKGCCT 196
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--NM 119
F+ H ST+ +CL + N+
Sbjct: 197 HVFEGHNSTV---------------------------------------RCLDIVEYKNI 217
Query: 120 KYIVSGDGDNSLRIWPTSPQT----HKDDERF-TVSHSEEITCF-------------TVT 161
KYIV+G DN+L +W ++ H ++ + V H+ E + TV+
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 277
Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+++GS D +L VW V K +L GHTD + + + +S S D+ + +
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS-TIYDHERKRCISASMDTTIRI 336
Query: 222 WDMETGGEEHFLAGHLGCVTCVKL--------AGDGTV 251
WD+E G + L GH V ++L A DG++
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI 374
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+ GH+ +V V+ N + VSGS DNT VW + + H I + + +
Sbjct: 266 LRGHMASVRTVSGHGNIV--VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQT 140
R +++ I +W +N +L+Y+ G + + + + K++VS D S+R W + +
Sbjct: 324 RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383
Query: 141 HKDDERFTVSHSE--EITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV-LVGHTDHV 197
K F+ H+ IT F V+ L++GS + ++ + GKL ++ D +
Sbjct: 384 RK----FSYHHTNLSAITTFYVS--DNILVSGSEN-QFNIYNLRSGKLVHANILKDADQI 436
Query: 198 SCVAVAVTNKSLVVSGSKD 216
+V K+LV + KD
Sbjct: 437 W--SVNFKGKTLVAAVEKD 453
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 44/232 (18%)
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHN 118
+T + H ++++ D+ V+T +I V+ + N + L G L H
Sbjct: 115 TTLRGHMTSVITCLQFEDNY-VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 119 MKYIVSGDGDNSLRIWPTSPQ--THKDDERFTVSHSEEITCFTVTW--DSQYLITGSRDM 174
+VSG D ++R+W TH + H+ + C + + +Y++TGSRD
Sbjct: 174 -GILVSGSTDRTVRVWDIKKGCCTHVFE-----GHNSTVRCLDIVEYKNIKYIVTGSRDN 227
Query: 175 SLKVWQVV--------GGKLAQVLVGHT------------DHVSCVAVAVTNKSLVVSGS 214
+L VW++ G + LV HT H++ V + ++VVSGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 215 KDSNLIVWDMETGGEEHFLAGHLGCVT----------CVKLAGDGTVAMSDL 256
D+ LIVWD+ + L+GH + C+ + D T+ + DL
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 28/204 (13%)
Query: 2 GGMDCLVNVWQMNSHEL-------QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWG 54
G D V +W++ E + GH + VS +A+S + FA+S S D T ++W
Sbjct: 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
Query: 55 LTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---- 110
L G+ F HQS + +VA D+R+++++ I +W SA +
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW 164
Query: 111 -KCLTVTHNMK----------YIVSGDGDNSLRIWPTSPQTHKDDERFTV-SHSEEITCF 158
C+ + MK Y S D L++W T+ Q R+T +H +
Sbjct: 165 VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI-----RYTFKAHESNVNHL 219
Query: 159 TVTWDSQYLITGSRDMSLKVWQVV 182
+++ + +Y+ TG +D L +W ++
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDIL 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 163 DSQYLITGSRDMSLKVWQVVG-------GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
DS LI+GSRD ++ +W++ G + L GH VS +A++ N +S S
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSW 96
Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLR 269
D L +WD+ TG GH V V + D +S AG +R ++
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS-------AGAEREIK 143
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKD----DERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
++SG D ++ IW + + H+ ++ ++ ++ + I+ S D +L+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 178 VWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG-- 235
+W + G + VGH V VA + N+ ++ +G+ + + +W++ GE F +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNIL--GECKFSSAEK 158
Query: 236 --HLGCVTCVKLA 246
H V+CV+ +
Sbjct: 159 ENHSDWVSCVRYS 171
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + GH + V VA SP++ +S + K+W + LG +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSS 155
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD------------NAQLLYSALGPSKC 112
++ V+ + S + +++K A + A N Q+ Y+
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESN 215
Query: 113 ---LTVTHNMKYIVSGDGDNSLRIWP----TSPQTHKD 143
L+++ N KYI +G D L IW T PQ D
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 118/284 (41%), Gaps = 46/284 (16%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW---------GLTLG 58
V +W ++S + GHL+ V V SP+ ++ S+D T +VW + L
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 930
Query: 59 SVVS-TFKSHQSTILAV--------------------------AVLSDSRRVVT-SDKAG 90
+ F+ +++ +LAV LS V D+ G
Sbjct: 931 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 990
Query: 91 VIAVWVADNAQLLYSALGPSKC---LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF 147
I + N ++ S +G K + T + K ++S D+ +++W D F
Sbjct: 991 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW----NWQTGDYVF 1046
Query: 148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK 207
+H E + F + DS+ L++ S D ++KVW V+ G++ + H V A++ ++
Sbjct: 1047 LQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDA 1104
Query: 208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV 251
+ S S D +W + H L GH GCV C + DG +
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1148
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D +L+++ D + +H +E+ C + D Y+ T S D +K+W
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS---LVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
GKL H++ V+C TNKS L+ +GS D L +WD+ + + GH
Sbjct: 694 ATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 751
Query: 239 CVTCVKLAGDGTVAMS 254
V + + D + S
Sbjct: 752 SVNHCRFSPDDELLAS 767
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
D V VW + + ++ H TV AIS ++ S S D TAK+W L S +
Sbjct: 1070 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1129
Query: 64 FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA 106
K H + A D + T D G I +W + QLL+S
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D ++ VW + + ++ H TV + +S +S S D T KVW + G + F
Sbjct: 1031 DSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDF 1088
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKY 121
HQ T+L+ A+ SD+ + ++ +W D L+ G + +C + +
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1148
Query: 122 IVSGDGDNSLRIWPTSPQTHKDD------ERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ +GD + +RIW S E T +H +T + DS+ L++
Sbjct: 1149 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--Y 1206
Query: 176 LKVWQVVGGKLAQVL 190
LK W V G +Q
Sbjct: 1207 LKWWNVATGDSSQTF 1221
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 107/265 (40%), Gaps = 20/265 (7%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
G D + V++ + E ++ H + V C A S + + + S D K+W G +V
Sbjct: 641 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 700
Query: 63 TFKSHQSTILAVAVLSDSRRVV--TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--- 117
T+ H + + S ++ T + +W + + + G + +V H
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--SVNHCRF 758
Query: 118 --NMKYIVSGDGDNSLRIWPTSPQTHKDD---ERFTVSHSEE-------ITCFTVTWDSQ 165
+ + + S D +LR+W + +RF +S + + C + + D
Sbjct: 759 SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 818
Query: 166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
+I +++ L G LA++ GH + + + V++ S+ + +W+++
Sbjct: 819 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNID 877
Query: 226 TGGEEHFLAGHLGCVTCVKLAGDGT 250
+ + GHL V V + DG+
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGS 902
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 20/239 (8%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D + + ++ ++ + S+ GH V + + + +S SED+ +VW G
Sbjct: 985 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1044
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTH 117
V ++HQ T+ +L DS R+++ G + VW ++ G ++
Sbjct: 1045 V-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ S D + +IW + + + H+ + C + D L TG + ++
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDGILLATGDDNGEIR 1159
Query: 178 VWQVVGGKLAQ------VLVGHTDH---VSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
+W V G+L V G H V+ V + +K+LV +G L W++ TG
Sbjct: 1160 IWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY---LKWWNVATG 1215
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 53/307 (17%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--- 58
G D + +W +N E ++TM GH N+V+ SP+ S S D T ++W +
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 59 ---SVVSTFKSHQSTILAVAVL-------SDSRRVVTSDK----------AGVIA-VWVA 97
+V F S + V V+ +D +++ + K +G++A +
Sbjct: 786 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 98 DNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC 157
++ + Y P L V +Y V +W + D R H +
Sbjct: 846 HHSTIQYCDFSPYDHLAVIALSQYCV--------ELWNIDSRLKVADCR---GHLSWVHG 894
Query: 158 FTVTWDSQYLITGSRDMSLKVWQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
+ D +T S D +++VW+ V A VL D V N+++V++
Sbjct: 895 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-----VVFQENETMVLAVDN 949
Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTC------VKLAG-DGTVAMSDLPPSR----PAGP 264
L + +TG ++ + C V DG + + +LP +R G
Sbjct: 950 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1009
Query: 265 KRPLRRL 271
K+ +R +
Sbjct: 1010 KKAVRHI 1016
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
Query: 25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV 84
H + V S + S D T +V+ G + K+H+ +L A SD +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 85 TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-----NMKYIVSGDGDNSLRIWPTSPQ 139
T + +W + +L+++ S+ + H N + +G D L++W +
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-- 738
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
K+ H+ + + D + L + S D +L++W V
Sbjct: 739 -QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 137 SPQTHKDDERFTVS-HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD 195
+ +T K+ R V H++ + + D Q + + D +L+V++ G+ + H D
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 665
Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
V C A + ++ S + + S D + +WD TG H H V C
Sbjct: 666 EVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 711
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
V+ V SP+S VS K W + G TF ++ + + + V D R VT D
Sbjct: 1188 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDN 1245
Query: 89 AGVIAV 94
G++ +
Sbjct: 1246 LGILYI 1251
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 46/284 (16%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW---------GLTLG 58
V +W ++S + GHL+ V V SP+ ++ S+D T +VW + L
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923
Query: 59 SVVS-TFKSHQSTILAV--------------------------AVLSDSRRVVT-SDKAG 90
+ F+ +++ +LAV LS V D+ G
Sbjct: 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983
Query: 91 VIAVWVADNAQLLYSALGPSKC---LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF 147
I + N ++ S +G K + T + K ++S D+ +++W + QT D F
Sbjct: 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW--NWQT--GDYVF 1039
Query: 148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK 207
+H E + F + DS+ L++ S D ++KVW V+ G++ + H V A++ ++
Sbjct: 1040 LQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDA 1097
Query: 208 SLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV 251
+ S S D +W + H L GH GCV C + DG +
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
I S D +L+++ D + +H +E+ C + D Y+ T S D +K+W
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIK---AHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS---LVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
GKL H++ V+C TNKS L+ +GS D L +WD+ + + GH
Sbjct: 687 ATGKLVHTYDEHSEQVNC--CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744
Query: 239 CVTCVKLAGDGTVAMS 254
V + + D + S
Sbjct: 745 SVNHCRFSPDDELLAS 760
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
D V VW + + ++ H TV AIS ++ S S D TAK+W L S +
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE 1122
Query: 64 FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA 106
K H + A D + T D G I +W + QLL+S
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D ++ VW + + ++ H TV + +S +S S D T KVW + G + F
Sbjct: 1024 DSVIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDF 1081
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTVTHNMKY 121
HQ T+L+ A+ SD+ + ++ +W D L+ G + +C + +
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141
Query: 122 IVSGDGDNSLRIWPTSPQTHKDD------ERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ +GD + +RIW S E T +H +T + DS+ L++
Sbjct: 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--Y 1199
Query: 176 LKVWQVVGGKLAQVL 190
LK W V G +Q
Sbjct: 1200 LKWWNVATGDSSQTF 1214
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/265 (18%), Positives = 107/265 (40%), Gaps = 20/265 (7%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
G D + V++ + E ++ H + V C A S + + + S D K+W G +V
Sbjct: 634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693
Query: 63 TFKSHQSTILAVAVLSDSRRVV--TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--- 117
T+ H + + S ++ T + +W + + + G + +V H
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--SVNHCRF 751
Query: 118 --NMKYIVSGDGDNSLRIWPTSPQTHKDD---ERFTVSHSEE-------ITCFTVTWDSQ 165
+ + + S D +LR+W + +RF +S + + C + + D
Sbjct: 752 SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 811
Query: 166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
+I +++ L G LA++ GH + + + V++ S+ + +W+++
Sbjct: 812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNID 870
Query: 226 TGGEEHFLAGHLGCVTCVKLAGDGT 250
+ + GHL V V + DG+
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGS 895
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 20/239 (8%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D + + ++ ++ + S+ GH V + + + +S SED+ +VW G
Sbjct: 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTH 117
V ++HQ T+ +L DS R+++ G + VW ++ G ++
Sbjct: 1038 V-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ S D + +IW + + + H+ + C + D L TG + ++
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRCSAFSLDGILLATGDDNGEIR 1152
Query: 178 VWQVVGGKLAQ------VLVGHTDH---VSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
+W V G+L V G H V+ V + +K+LV +G L W++ TG
Sbjct: 1153 IWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY---LKWWNVATG 1208
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 53/307 (17%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--- 58
G D + +W +N E ++TM GH N+V+ SP+ S S D T ++W +
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 59 ---SVVSTFKSHQSTILAVAVL-------SDSRRVVTSDK----------AGVIA-VWVA 97
+V F S + V V+ +D +++ + K +G++A +
Sbjct: 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 98 DNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITC 157
++ + Y P L V +Y V +W + D R H +
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCV--------ELWNIDSRLKVADCR---GHLSWVHG 887
Query: 158 FTVTWDSQYLITGSRDMSLKVWQV--VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
+ D +T S D +++VW+ V A VL D V N+++V++
Sbjct: 888 VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID-----VVFQENETMVLAVDN 942
Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTC------VKLAG-DGTVAMSDLPPSR----PAGP 264
L + +TG ++ + C V DG + + +LP +R G
Sbjct: 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002
Query: 265 KRPLRRL 271
K+ +R +
Sbjct: 1003 KKAVRHI 1009
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 41/205 (20%)
Query: 25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV 84
H + V S + S D T +V+ G + K+H+ +L A SD +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 85 TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD 144
T + +W + +L+++ S+ + H
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH--------------------------- 706
Query: 145 ERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV 204
FT + L TGS D LK+W + + + GHT+ V+ +
Sbjct: 707 -------------FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS- 752
Query: 205 TNKSLVVSGSKDSNLIVWDMETGGE 229
+ L+ S S D L +WD+ + E
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANE 777
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 137 SPQTHKDDERFTVS-HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTD 195
+ +T K+ R V H++ + + D Q + + D +L+V++ G+ + H D
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED 658
Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
V C A + ++ S + + S D + +WD TG H H V C
Sbjct: 659 EVLCCAFS-SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
V+ V SP+S VS K W + G TF ++ + + + V D R VT D
Sbjct: 1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDN 1238
Query: 89 AGVIAV 94
G++ +
Sbjct: 1239 LGILYI 1244
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18 LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
L+ T+EGH V+ +A S PN + +S S D T W LT G V +FK H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
+ C T+T + Y +S D
Sbjct: 67 IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
+LR+W + T + +RF V H ++ + + +I+GSRD ++KVW + G LA
Sbjct: 88 TLRLWDVA--TGETYQRF-VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
L+GH D VS V V K+ ++S D + W++ E GH + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
+ DGT+ S
Sbjct: 204 ASPDGTLIAS 213
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S + +V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKA 119
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 120 SXIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 160
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 161 KADDDSVTI------------------ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD + +W++
Sbjct: 203 -TASPDGTLIASAGKDGEIXLWNL 225
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 22/239 (9%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ + W + Q+ +G + LT
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ + I S D + +W + + +T+S +E+ + ++Y + +
Sbjct: 205 SPDGTLIASAGKDGEIXLWNLAAKK----AXYTLSAQDEVFSLAFS-PNRYWLAAATATG 259
Query: 176 LKVW----QVVGGKLAQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETG 227
+KV+ Q + L G++ AV++ + + +G D+ + VW + T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D V W +N ++++ GH + ++ + SP+ S +D +W L
Sbjct: 172 AGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP------------ 109
T S Q + ++A S +R + + A I V+ D Q L L P
Sbjct: 232 YTL-SAQDEVFSLA-FSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPH 288
Query: 110 SKCLTVTHNMKYIVSGDGDNSLRIW 134
+ L + + + + +G DN +R+W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 67
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH + + +V
Sbjct: 68 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGHKSD---VXSV 113
Query: 300 DERLKRRFSVSASMEEISKI 319
D K +S S ++ K+
Sbjct: 114 DIDKKASXIISGSRDKTIKV 133
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 61/258 (23%)
Query: 13 MNSHE---LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVV 61
M S+E L+ T+EGH V+ +A S PN + +S S D T W LT G V
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPV 58
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+FK H + C T+T + Y
Sbjct: 59 RSFKGHSHIV--------------------------------------QDC-TLTADGAY 79
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
+S D +LR+W + T + +RF V H ++ + + +I+GSRD ++KVW +
Sbjct: 80 ALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGH 236
G LA L+GH D VS V V K+ ++S D + W++ E GH
Sbjct: 137 KGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 237 LGCVTCVKLAGDGTVAMS 254
+ + + DGT+ S
Sbjct: 196 NSNINTLTASPDGTLIAS 213
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 15/192 (7%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN------SIFAVSGSEDNTAKVWGL 55
G D + VW + L +T+ GH + VS V + PN S+ +S D K W L
Sbjct: 125 GSRDKTIKVWTIKGQCL-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 56 TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW--VADNAQLLYSALGPSKCL 113
+ + F H S I + D + ++ K G I +W A A SA L
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL 243
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER--FT-VSHSEEITCFTVTW--DSQYLI 168
+ N +Y ++ ++++ PQ DD R F S + E ++ W D Q L
Sbjct: 244 AFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 169 TGSRDMSLKVWQ 180
G D ++VWQ
Sbjct: 303 AGYTDNVIRVWQ 314
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S +++V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 120 SMIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 160
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 161 KADDDSVTI------------------ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD +++W++
Sbjct: 203 -TASPDGTLIASAGKDGEIMLWNL 225
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ ++ W + Q+ +G + LT
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQT-----HKDDERFTVSHSEE-----------ITCFT 159
+ + I S D + +W + + DE F+++ S I F+
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 160 VTWDSQYLITGSR 172
+ D QYL+ R
Sbjct: 265 L--DPQYLVDDLR 275
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 67
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH S +M +
Sbjct: 68 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGH-KSDVMSVDI 115
Query: 300 DERLKRRFSVSASMEEISKI 319
D+ K +S S ++ K+
Sbjct: 116 DK--KASMIISGSRDKTIKV 133
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18 LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
L+ T+EGH V+ +A S PN + +S S D T W LT G V +FK H
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
+ C T+T + Y +S D
Sbjct: 61 IV--------------------------------------QDC-TLTADGAYALSASWDK 81
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
+LR+W + T + +RF V H ++ + + +I+GSRD ++KVW + G LA
Sbjct: 82 TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 137
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
L+GH D VS V V K+ ++S D + W++ E GH + +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 245 LAGDGTVAMS 254
+ DGT+ S
Sbjct: 198 ASPDGTLIAS 207
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S +++V + +
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 113
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 114 SMIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 154
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 155 KADDDSVTI------------------ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 196
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD +++W++
Sbjct: 197 -TASPDGTLIASAGKDGEIMLWNL 219
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 22/239 (9%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ ++ W + Q+ +G + LT
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 198
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ + I S D + +W + + +T+S +E+ + ++Y + +
Sbjct: 199 SPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSAQDEVFSLAFS-PNRYWLAAATATG 253
Query: 176 LKVW----QVVGGKLAQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETG 227
+KV+ Q + L G++ AV++ + + +G D+ + VW + T
Sbjct: 254 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D +V W +N ++++ GH + ++ + SP+ S +D +W L +
Sbjct: 166 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP------------ 109
T S Q + ++A S +R + + A I V+ D Q L L P
Sbjct: 226 YTL-SAQDEVFSLA-FSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPH 282
Query: 110 SKCLTVTHNMKYIVSGDGDNSLRIW 134
+ L + + + + +G DN +R+W
Sbjct: 283 AVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 61
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH S +M +
Sbjct: 62 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGH-KSDVMSVDI 109
Query: 300 DERLKRRFSVSASMEEISKI 319
D+ K +S S ++ K+
Sbjct: 110 DK--KASMIISGSRDKTIKV 127
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 106/258 (41%), Gaps = 61/258 (23%)
Query: 13 MNSHE---LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVV 61
M S+E L+ T+EGH V+ +A S PN + +S S D T W LT G V
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPV 58
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+FK H + C T+T + Y
Sbjct: 59 RSFKGHSHIV--------------------------------------QDC-TLTADGAY 79
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
+S D +LR+W + T + +RF V H ++ + + +I+GSRD ++KVW +
Sbjct: 80 ALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGH 236
G LA L+GH D VS V V K+ ++S D + W++ E GH
Sbjct: 137 KGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195
Query: 237 LGCVTCVKLAGDGTVAMS 254
+ + + DGT+ S
Sbjct: 196 NSNINTLTASPDGTLIAS 213
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S +++V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 120 SMIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 160
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 161 KADDDSVTI------------------ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD +++W++
Sbjct: 203 -TASPDGTLIASAGKDGEIMLWNL 225
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 22/239 (9%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ ++ W + Q+ +G + LT
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ + I S D + +W + + +T+S +E+ + ++Y + +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSAQDEVFSLAFS-PNRYWLAAATATG 259
Query: 176 LKVW----QVVGGKLAQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETG 227
+KV+ Q + L G++ AV++ + + +G D+ + VW + T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D +V W +N ++++ GH + ++ + SP+ S +D +W L +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP------------ 109
T S Q + ++A S +R + + A I V+ D Q L L P
Sbjct: 232 YTL-SAQDEVFSLA-FSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPH 288
Query: 110 SKCLTVTHNMKYIVSGDGDNSLRIW 134
+ L + + + + +G DN +R+W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 67
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH S +M +
Sbjct: 68 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGH-KSDVMSVDI 115
Query: 300 DERLKRRFSVSASMEEISKI 319
D+ K +S S ++ K+
Sbjct: 116 DK--KASMIISGSRDKTIKV 133
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18 LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
L+ T+EGH V+ +A S PN + +S S D T W LT G V +FK H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
+ C T+T + Y +S D
Sbjct: 67 IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
+LR+W + T + +RF V H ++ + + +I+GSRD ++KVW + G LA
Sbjct: 88 TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
L+GH D VS V V K+ ++S D + W++ E GH + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
+ DGT+ S
Sbjct: 204 ASPDGTLIAS 213
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S +++V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 120 SMIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 160
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 161 KADDDSVTI------------------ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD +++W++
Sbjct: 203 -TASPDGTLIASAGKDGEIMLWNL 225
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 22/239 (9%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ ++ W + Q+ +G + LT
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ + I S D + +W + + +T+S +E+ + ++Y + +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSAQDEVFSLAFS-PNRYWLAAATATG 259
Query: 176 LKVW----QVVGGKLAQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETG 227
+KV+ Q + L G++ AV++ + + +G D+ + VW + T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D +V W +N ++++ GH + ++ + SP+ S +D +W L +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGP------------ 109
T S Q + ++A S +R + + A I V+ D Q L L P
Sbjct: 232 YTL-SAQDEVFSLA-FSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPH 288
Query: 110 SKCLTVTHNMKYIVSGDGDNSLRIW 134
+ L + + + + +G DN +R+W
Sbjct: 289 AVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 67
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH S +M +
Sbjct: 68 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGH-KSDVMSVDI 115
Query: 300 DERLKRRFSVSASMEEISKI 319
D+ K +S S ++ K+
Sbjct: 116 DK--KASMIISGSRDKTIKV 133
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 18 LQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGLT-----LGSVVSTFKSHQS 69
L+ T+EGH V+ +A S PN + +S S D T W LT G V +FK H
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLL--LSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDN 129
+ C T+T + Y +S D
Sbjct: 67 IV--------------------------------------QDC-TLTADGAYALSASWDK 87
Query: 130 SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
+LR+W + T + +RF V H ++ + + +I+GSRD ++KVW + G LA
Sbjct: 88 TLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-T 143
Query: 190 LVGHTDHVSCVAVAVTNKS-----LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
L+GH D VS V V K+ ++S D + W++ E GH + +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 245 LAGDGTVAMS 254
+ DGT+ S
Sbjct: 204 ASPDGTLIAS 213
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ +GH + V ++ + +A+S S D T ++W + G F H+S +++V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
+++ + I VW Q L + LG HN D + +R+ P
Sbjct: 120 SMIISGSRDKTIKVWTI-KGQCLATLLG--------HN-------DWVSQVRV---VPNE 160
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
DD+ T+ I+ D +K W + ++ +GH +++ +
Sbjct: 161 KADDDSVTI------------------ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDM 224
A + +L+ S KD +++W++
Sbjct: 203 -TASPDGTLIASAGKDGEIMLWNL 225
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D +V W +N ++++ GH + ++ + SP+ S +D +W L +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL---------YSALGPSKC 112
T S Q + ++A S +R + + A I V+ D L+ YSA
Sbjct: 232 YTL-SAQDEVFSLA-FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA 289
Query: 113 LTV--THNMKYIVSGDGDNSLRIW 134
+++ + + + + +G DN +R+W
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVW 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 98/239 (41%), Gaps = 22/239 (9%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + + E GH + V V I + +SGS D T KVW + G ++T
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 65 KSHQSTILAVAVL------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCLTV 115
H + V V+ DS ++++ ++ W + Q+ +G + LT
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204
Query: 116 THNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMS 175
+ + I S D + +W + + +T+S +E+ + ++Y + +
Sbjct: 205 SPDGTLIASAGKDGEIMLWNLAAKK----AMYTLSAQDEVFSLAFS-PNRYWLAAATATG 259
Query: 176 LKVW----QVVGGKLAQVLVGHTDHVSCVAVAV---TNKSLVVSGSKDSNLIVWDMETG 227
+KV+ Q + L G++ AV++ + + +G D+ + VW + T
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 186 LAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF------LAGHLGC 239
L L GH V+ +A + +L++S S+D LI W + TG ++ F GH
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKL-TGDDQKFGVPVRSFKGHSHI 67
Query: 240 VTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
V L DG A+S A + LR L + +TY QR GH S +M +
Sbjct: 68 VQDCTLTADGAYALS-------ASWDKTLR--LWDVATGETY--QRFVGH-KSDVMSVDI 115
Query: 300 DERLKRRFSVSASMEEISKI 319
D+ K +S S ++ K+
Sbjct: 116 DK--KASMIISGSRDKTIKV 133
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 13/260 (5%)
Query: 2 GGMDCLVNVWQMNSH--ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
G +D LV VW+ +LQ ++EGH V V IS A S S D ++W L G
Sbjct: 54 GSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK 113
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK-CLTVTH- 117
+ + + +A DS+ + T G + ++ ++ + YS K L++ +
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 118 -NMKYIVSGDGDNSLRIW--PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM 174
+ KY+ SG D + I+ T H + H+ I T + DSQ L+T S D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATGKLLHTLE-----GHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 175 SLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA 234
+K++ V LA L GH V VA + V S S ++ VWD+ T H
Sbjct: 229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD-KSVKVWDVGTRTCVHTFF 287
Query: 235 GHLGCVTCVKLAGDGTVAMS 254
H V VK G+G+ +S
Sbjct: 288 DHQDQVWGVKYNGNGSKIVS 307
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 13/221 (5%)
Query: 37 NSIFAVSGSEDNTAKVWGL--TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAV 94
NS V+GS D+ KVW + + + HQ +++V + +S I +
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 95 WVADNAQLLYSA-LGPSKCLTVTH--NMKYIVSGDGDNSLRIW--PTSPQTHKDDERFTV 149
W +N + + S GP T+ + +Y+ +G + I+ + + + D R
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR--- 163
Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSL 209
+ I + D +YL +G+ D + ++ + GKL L GH + + + + L
Sbjct: 164 --GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQL 220
Query: 210 VVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
+V+ S D + ++D++ L+GH V V D T
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 147 FTVSHSEEITCFTVTW------DSQYLITGSRDMSLKVWQVVGGK--LAQVLVGHTDHVS 198
F + + ++V W +S+ ++TGS D +KVW+ + L L GH V
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV 84
Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
V ++ T + S S D+++ +WD+E G
Sbjct: 85 SVDISHT-LPIAASSSLDAHIRLWDLENG 112
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 48/248 (19%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
+G D + V+ N+ E E H + + +A+ P + +SGS+D T K+W +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
+ TF+ H+ ++ VA ++ PS
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
SG D ++++W T FT++ +E V + D Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+K+W L GH +VS AV +++SGS+D L +W+ T E L
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 236 HLGCVTCV 243
L C+
Sbjct: 269 GLERSWCI 276
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM 224
++I GS D ++V+ G+ H D++ +AV T K V+SGS D + +W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW 126
Query: 225 ETG-GEEHFLAGHLGCVTCVKL 245
E E GH V CV
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAF 148
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 25/215 (11%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW--VADNAQ---------LLYSALGPSK 111
T K H + +L + D RR+V+S + G + VW N + ++ A PS
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD---DERFTVSHSEEITCFTVTWDSQYLI 168
C I G DN ++P + +++ ++ H+ ++ + T ++
Sbjct: 119 CA--------IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 169 TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK-SLVVSGSKDSNLIVWDMETG 227
T S D + +W V G+L Q GH V C+ +A + + VSG D +VWDM +G
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 228 GEEHFLAGHLGCVTCVKL--AGDGTVAMSDLPPSR 260
H V V+ +GD + SD R
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 53/220 (24%)
Query: 10 VWQMNSHELQSTMEGHLNTVSCVAISPNSI--FAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
+W + S +L + GH V C+ ++P+ VSG D A VW + G V F++H
Sbjct: 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Query: 68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDG 127
+S + +S R S A SG
Sbjct: 240 ESDV-------NSVRYYPSGDA--------------------------------FASGSD 260
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCF-----TVTWDSQYLITGSRDMSLKVWQVV 182
D + R++ +R +S+E F + + L G D ++ VW V+
Sbjct: 261 DATCRLYDLRA------DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314
Query: 183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
G +L GH + VS + V+ + + SGS D L VW
Sbjct: 315 KGSRVSILFGHENRVSTLRVS-PDGTAFCSGSWDHTLRVW 353
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 101/253 (39%), Gaps = 22/253 (8%)
Query: 20 STMEGHLNTVSC-----VAISPNSIFAVSGSEDNTAKVWGLT------LGSVVSTFKSHQ 68
+T + H T+ C A +P+ G DN V+ LT + + + H
Sbjct: 95 TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154
Query: 69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTV--THNMKYIV 123
+ + A + + +++T+ G A+W ++ QLL S G CL + + V
Sbjct: 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214
Query: 124 SGDGDNSLRIWPT-SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
SG D +W S Q + E +H ++ +GS D + +++ +
Sbjct: 215 SGGCDKKAMVWDMRSGQCVQAFE----THESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Query: 183 GGKLAQVLVGHTDHVSCVAVAVT-NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVT 241
+ + + +V + + L+ +G D + VWD+ G L GH V+
Sbjct: 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330
Query: 242 CVKLAGDGTVAMS 254
++++ DGT S
Sbjct: 331 TLRVSPDGTAFCS 343
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
GG D VW M S + E H + V+ V P+ SGS+D T +++ L V
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Query: 62 STFKSHQSTILAVAVLSDS---RRVVTSDKAGVIAVW---VADNAQLLYSALGPSKCLTV 115
+ + S +S I + + S R + I VW +L+ L V
Sbjct: 276 AIY-SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
Query: 116 THNMKYIVSGDGDNSLRIWP 135
+ + SG D++LR+W
Sbjct: 335 SPDGTAFCSGSWDHTLRVWA 354
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 48/231 (20%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
+G D + V+ N+ E E H + + +A+ P + +SGS+D T K+W +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
+ TF+ H+ ++ VA ++ PS
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
SG D ++++W T FT++ +E V + D Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET 226
+K+W L GH +VS AV +++SGS+D L +W+ T
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM 224
++I GS D ++V+ G+ H D++ +AV T K V+SGS D + +W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW 126
Query: 225 ETG-GEEHFLAGHLGCVTCVKL 245
E E GH V CV
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAF 148
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 99/248 (39%), Gaps = 48/248 (19%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
+G D + V+ N+ E E H + + +A+ P + +SGS+D T K+W +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
+ TF+ H+ ++ VA ++ PS
Sbjct: 132 LEQTFEGHEHFVMCVA----------------------------FNPKDPST-------- 155
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW----DSQYLITGSRDMS 175
SG D ++++W T FT++ +E V + D Y+IT S D++
Sbjct: 156 --FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+K+W L GH +VS AV +++SGS+D L +W+ T E L
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 236 HLGCVTCV 243
L C+
Sbjct: 269 GLERSWCI 276
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM 224
++I GS D ++V+ G+ H D++ +AV T K V+SGS D + +W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW 126
Query: 225 ETG-GEEHFLAGHLGCVTCVKL 245
E E GH V CV
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAF 148
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
GG+D + +++ + + E + + GH +SC + N I SG D T +W +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
G +TF H ++++++ D+R V+ +W + G +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
N +G D + R++ D E T SH IT + + + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
D + VW + A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTL--GSV-VSTFKSHQSTILAVAVLSDSRRVVTSDK 88
A +P+ + G DN ++ L G+V VS + + L+ D ++VTS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 89 AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
A+W + Q + G L++ + + VSG D S ++W + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 220
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT 205
FT H +I + TGS D + +++ + + +++ D++ C +V+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVS 277
Query: 206 ---NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
+ L+++G D N VWD LAGH V+C+ + DG
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
T + H + I A+ +DSR ++++ + G + +W + +++ L S +T + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
Y+ G DN I+ + +T + + R + H+ ++C D+Q ++T S D +
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+W + G+ GHT V +++A + L VSG+ D++ +WD+ G GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
++++ L GHT ++SC N+ +V+ S D+ +WD+ETG + GH G V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 245 LAGDGTVAMS 254
LA D + +S
Sbjct: 192 LAPDTRLFVS 201
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
GG+D + +++ + + E + + GH +SC + N I SG D T +W +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
G +TF H ++++++ D+R V+ +W + G +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
N +G D + R++ D E T SH IT + + + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
D + VW + A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTL--GSV-VSTFKSHQSTILAVAVLSDSRRVVTSDK 88
A +P+ + G DN ++ L G+V VS + + L+ D ++VTS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 89 AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
A+W + Q + G L++ + + VSG D S ++W + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 220
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT 205
FT H +I + TGS D + +++ + + +++ D++ C +V+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVS 277
Query: 206 ---NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
+ L+++G D N VWD LAGH V+C+ + DG
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
T + H + I A+ +DSR ++++ + G + +W + +++ L S +T + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
Y+ G DN I+ + +T + + R + H+ ++C D+Q ++T S D +
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+W + G+ GHT V +++A + L VSG+ D++ +WD+ G GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
++++ L GHT ++SC N+ +V+ S D+ +WD+ETG + GH G V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191
Query: 245 LAGDGTVAMS 254
LA D + +S
Sbjct: 192 LAPDTRLFVS 201
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
GG+D + +++ + + E + + GH +SC + N I SG D T +W +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
G +TF H ++++++ D+R V+ +W + G +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
N +G D + R++ D E T SH IT + + + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
D + VW + A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTL--GSV-VSTFKSHQSTILAVAVLSDSRRVVTSDK 88
A +P+ + G DN ++ L G+V VS + + L+ D ++VTS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 89 AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
A+W + Q + G L++ + + VSG D S ++W + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 220
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT 205
FT H +I + TGS D + +++ + + +++ D++ C +V+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVS 277
Query: 206 ---NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
+ L+++G D N VWD LAGH V+C+ + DG
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
T + H + I A+ +DSR +V++ + G + +W + +++ L S +T + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
Y+ G DN I+ + +T + + R + H+ ++C D+Q ++T S D +
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+W + G+ GHT V +++A + L VSG+ D++ +WD+ G GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 120 KYIVSGDGDNSLRIWP--TSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ +VS D L IW T+ + H + S +TC Y+ G D
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHA----IPLRSSWVMTCAYAP-SGNYVACGGLDNICS 122
Query: 178 VWQVV----GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL 233
++ + ++++ L GHT ++SC N+ +V+ S D+ +WD+ETG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF 180
Query: 234 AGHLGCVTCVKLAGDGTVAMS 254
GH G V + LA D + +S
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVS 201
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
GG+D + +++ + + E + + GH +SC + N I SG D T +W +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 172
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
G +TF H ++++++ D+R V+ +W + G +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
N +G D + R++ D E T SH IT + + + L+ G
Sbjct: 233 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
D + VW + A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTL--GSV-VSTFKSHQSTILAVAVLSDSRRVVTSDK 88
A +P+ + G DN ++ L G+V VS + + L+ D ++VTS
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 89 AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
A+W + Q + G L++ + + VSG D S ++W + +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 220
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT 205
FT H +I + TGS D + +++ + + +++ D++ C +V+
Sbjct: 221 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVS 277
Query: 206 ---NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
+ L+++G D N VWD LAGH V+C+ + DG
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
T + H + I A+ +DSR +V++ + G + +W + +++ L S +T + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
Y+ G DN I+ + +T + + R + H+ ++C D+Q ++T S D +
Sbjct: 110 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+W + G+ GHT V +++A + L VSG+ D++ +WD+ G GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 225
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 120 KYIVSGDGDNSLRIWP--TSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ +VS D L IW T+ + H + S +TC Y+ G D
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHA----IPLRSSWVMTCAYAP-SGNYVACGGLDNICS 122
Query: 178 VWQVV----GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL 233
++ + ++++ L GHT ++SC N+ +V+ S D+ +WD+ETG +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF 180
Query: 234 AGHLGCVTCVKLAGDGTVAMS 254
GH G V + LA D + +S
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVS 201
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 18/233 (7%)
Query: 2 GGMDCLVNVWQMNSHE----LQSTMEGHLNTVSCVA-ISPNSIFAVSGSEDNTAKVWGLT 56
GG+D + +++ + + E + + GH +SC + N I SG D T +W +
Sbjct: 126 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCALWDIE 183
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPS---KCL 113
G +TF H ++++++ D+R V+ +W + G +
Sbjct: 184 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 243
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSE---EITCFTVTWDSQYLITG 170
N +G D + R++ D E T SH IT + + + L+ G
Sbjct: 244 CFFPNGNAFATGSDDATCRLF----DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 299
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
D + VW + A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 351
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 14/227 (6%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTL--GSV-VSTFKSHQSTILAVAVLSDSRRVVTSDK 88
A +P+ + G DN ++ L G+V VS + + L+ D ++VTS
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 89 AGVIAVWVADNAQLLYSAL---GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
A+W + Q + G L++ + + VSG D S ++W + +
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 231
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT 205
FT H +I + TGS D + +++ + + +++ D++ C +V+
Sbjct: 232 TFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVS 288
Query: 206 ---NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
+ L+++G D N VWD LAGH V+C+ + DG
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSA-LGPSKCLTVTH--NM 119
T + H + I A+ +DSR +V++ + G + +W + +++ L S +T + +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT---VSHSEEITCFTVTWDSQYLITGSRDMSL 176
Y+ G DN I+ + +T + + R + H+ ++C D+Q ++T S D +
Sbjct: 121 NYVACGGLDNICSIY--NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 177
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+W + G+ GHT V +++A + L VSG+ D++ +WD+ G GH
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGH 236
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 120 KYIVSGDGDNSLRIWP--TSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLK 177
+ +VS D L IW T+ + H + S +TC Y+ G D
Sbjct: 79 RLLVSASQDGKLIIWDSYTTNKVHA----IPLRSSWVMTCAYAP-SGNYVACGGLDNICS 133
Query: 178 VWQVV----GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL 233
++ + ++++ L GHT ++SC N+ +V+ S D+ +WD+ETG +
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF 191
Query: 234 AGHLGCVTCVKLAGDGTVAMS 254
GH G V + LA D + +S
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVS 212
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 14/211 (6%)
Query: 42 VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ 101
+ GS+D +V+ G V F++H I ++AV V++ + +W +N
Sbjct: 71 IVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Query: 102 LLYSALGPSK--CLTVTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEIT 156
L + + V N K SG D ++++W T FT++ +E
Sbjct: 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERG 186
Query: 157 CFTVTW----DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVS 212
V + D Y+IT S D+++K+W L GH +VS AV +++S
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS-FAVFHPTLPIIIS 245
Query: 213 GSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
GS+D L +W+ T E L L C+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 98/245 (40%), Gaps = 27/245 (11%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG-S 59
+G D + V+ N+ E E H + + +A+ P + +SGS+D T K+W +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 60 VVSTFKSHQSTILAVAV-LSDSRRVVTSDKAGVIAVWVADNAQLLYS-ALGPSKCLTVTH 117
+ TF+ H+ ++ VA D + + VW + ++ G + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 118 -----NMKYIVSGDGDNSLRIWPTSPQT-------HKDDERFTVSHSEEITCFTVTWDSQ 165
+ Y+++ D +++IW ++ H + F V H
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT----------LP 241
Query: 166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
+I+GS D +LK+W K+ + L + C+A T + ++ D+ V +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV--LS 299
Query: 226 TGGEE 230
G +E
Sbjct: 300 LGNDE 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM 224
++I GS D ++V+ G+ H D++ +AV T K V+SGS D + +W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNW 126
Query: 225 ETG-GEEHFLAGHLGCVTCVKL 245
E E GH V CV
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAF 148
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 15/236 (6%)
Query: 29 VSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
VSC +SP+ + G E+ ++ L + + H+ T+ + +D + +++S
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 89 AGVIAV--WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER 146
I V W D L K + N + ++S D ++++W + D
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKD-- 1086
Query: 147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTN 206
V H + ++ D+ + S D + K+W L GH V C A +V +
Sbjct: 1087 -FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSV-D 1144
Query: 207 KSLVVSGSKDSNLIVWDMETGGEEHFL--------AGHLGCVTCVKLAGDGTVAMS 254
+L+ +G + + +W++ G H A H G VT + + DG + +S
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS- 208
+H +E+ C + D +++ T S D +K+W + G+L H++ V+C TN S
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNC--CHFTNSSH 718
Query: 209 --LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
L+ +GS D L +WD+ + + GH V + + D + S
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 45/207 (21%)
Query: 25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV 84
H + V S + S D T +V+ G + K+H+ +L A +D R +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 85 TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDD 144
T + +W NS+ T H D
Sbjct: 680 TCSVDKKVKIW---------------------------------NSM----TGELVHTYD 702
Query: 145 ERFTVSHSEEITCFTVTWDSQYLI--TGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAV 202
E HSE++ C T S +L+ TGS D LK+W + + + GHT+ V+
Sbjct: 703 E-----HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRF 757
Query: 203 AVTNKSLVVSGSKDSNLIVWDMETGGE 229
+ +K L+ S S D L +WD + E
Sbjct: 758 SPDDK-LLASCSADGTLKLWDATSANE 783
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 19/201 (9%)
Query: 22 MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSR 81
+ GH TV + NS +S S D T KVW + G+ F HQ T+L+ + D+
Sbjct: 1046 LRGHQETVKDFRLLKNSRL-LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 82 RVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH---NMKYIVSGDGDNSLRIWPTS- 137
+ ++ +W D L+ G + C+ + + + +GD + +RIW S
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 138 --------PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
P + E +H +T + D + LI+ +K W VV G+ +Q
Sbjct: 1165 GELLHLCAPLS----EEGAATHGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQT 1218
Query: 190 LVGHTDHVSCVAVAVTNKSLV 210
+ ++ + V+ K+ V
Sbjct: 1219 FYTNGTNLKKIHVSPDFKTYV 1239
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT 56
G DC + +W +N E ++TM GH N+V+ SP+ S S D T K+W T
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
D V VW + + + H TV IS ++ S S D TAK+W L +
Sbjct: 1069 FDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHE 1128
Query: 64 FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY 104
+ H + A DS + T D G I +W N +LL+
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/298 (18%), Positives = 119/298 (39%), Gaps = 25/298 (8%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
G D + V++ + E ++ H + V C A S + F + S D K+W G +V
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVH 699
Query: 63 TFKSHQSTILAVAVLSDSRRVV--TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH--- 117
T+ H + + S ++ T + +W + + + G + +V H
Sbjct: 700 TYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN--SVNHCRF 757
Query: 118 --NMKYIVSGDGDNSLRIWPTSPQTHKDD---ERFTVSHSEE-------ITCFTVTWDSQ 165
+ K + S D +L++W + + ++F ++ + + C + + D
Sbjct: 758 SPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGA 817
Query: 166 YLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
++ +++ G L ++ GH + + N VV+ S+ + +W+ +
Sbjct: 818 RIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYC-VELWNTD 876
Query: 226 TGGEEHFLAGHLGCVTCVKLAGDGT--VAMSDLPPSRPAGPKRPLRR---LLKKEVSL 278
+ + GHL V V + DG+ + SD R K+ + +LK+EV +
Sbjct: 877 SRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV 934
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 15/217 (6%)
Query: 24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV 83
GH +T+ SP + AV ++W S V+ + H S + V D
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 84 VTSDKAGVIAVW----VADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
+TS I +W V N SA+ + + V ++ D+ R+ + +
Sbjct: 904 LTSSDDQTIRLWETKKVCKN-----SAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGR 958
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC 199
T + D +++C ++ QY+ G + ++++ ++V ++ Q H V
Sbjct: 959 TGQID----YLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWH 1014
Query: 200 VAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+ K+L +S S D+ + VW+ + + FL GH
Sbjct: 1015 IQFTADEKTL-ISSSDDAEIQVWNWQL-DKCIFLRGH 1049
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 157 CFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKD 216
CF+ D Q + + D +L+V++ G+ + H D V C A + T+ + + S D
Sbjct: 628 CFSE--DGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS-TDDRFIATCSVD 684
Query: 217 SNLIVWDMETGGEEHFLAGHLGCVTCVKLAG 247
+ +W+ TG H H V C
Sbjct: 685 KKVKIWNSMTGELVHTYDEHSEQVNCCHFTN 715
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
D L IW T T +H+ E+ C + S++++ TGS D ++ +W + KL
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
H D + V + N++++ S D L VWD+ GEE
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE 355
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
D L IW T T +H+ E+ C + S++++ TGS D ++ +W + KL
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
H D + V + N++++ S D L VWD+ GEE
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE 355
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 30/209 (14%)
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQ-----------LLYSALGPSK 111
T + H + ++ + +V++ + G + VW A +Q ++ A P
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-- 118
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE----RFTVSHSEEIT-CFTVTWDSQY 166
N + + G D++ I+ S Q +D R H + C V
Sbjct: 119 ------NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 167 LITGSRDMSLKVWQVVGGKLAQVL-----VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
LITGS D + +W V G+ + GHT V +++ N ++ +SGS D+ + +
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 222 WDME-TGGEEHFLAGHLGCVTCVKLAGDG 249
WD+ T GH G + VK DG
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 21/177 (11%)
Query: 24 GHLNTVSCVAISPNSIFA---VSGSEDNTAKVWGLTLGS-VVSTFKSHQSTILAVAVLSD 79
GH T +++S NS+ A +SGS D T ++W L + S V T+ H+ I +V D
Sbjct: 203 GH--TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 80 SRRVVTSDKAGVIAVW-VADNAQLLYSALGPSKC---LTVTHNMKYIVSG--------DG 127
+R T G ++ + QL P + L + ++ + +SG +G
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320
Query: 128 DNSLRIWPTS-PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG 183
D +W T + + SH I+C ++ D L TGS D +LK+W G
Sbjct: 321 D--CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/276 (19%), Positives = 103/276 (37%), Gaps = 71/276 (25%)
Query: 2 GGMDCLVNVWQMNSHE-------LQSTMEGHLNTVS-CVAISPNSIFAVSGSEDNTAKVW 53
GG+D +++ ++S + + GH S C + ++GS D T +W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 54 GLTLGSVVSTFKS-----HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG 108
+T G +S F S H + +L++++ S
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINS------------------------------ 215
Query: 109 PSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI 168
N +SG D ++R+W + R H +I D Q
Sbjct: 216 --------LNANMFISGSCDTTVRLWDLRITSRA--VRTYHGHEGDINSVKFFPDGQRFG 265
Query: 169 TGSRDMSLKVWQVVGGKLAQVLVGHTDH-------VSCVAVAVTNKSLVVSGSKDSNLIV 221
TGS D + +++ + G QV D V+ VA +++ + L+ +G + + V
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYV 324
Query: 222 WD-------METGGEEHFLAGHLGCVTCVKLAGDGT 250
WD + G ++ H G ++C+ L+ DG+
Sbjct: 325 WDTLLAEMVLNLGTLQN---SHEGRISCLGLSSDGS 357
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 15/151 (9%)
Query: 2 GGMDCLVNVWQMN-SHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D V +W + + T GH ++ V P+ +GS+D T +++ + G
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 61 VSTFK-------SHQSTILAVAVLSDSRRVVTSDKAGVIAVW-------VADNAQLLYSA 106
+ + + + +VA R + G VW V + L S
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 107 LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS 137
G CL ++ + + +G D +L+IW S
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS 86
N V+C+A S + V+G E+ ++W T G++++ H++ I++V D +++
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 87 DKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER 146
D V +W ++ T + + G +S+ + + H D
Sbjct: 168 DVENVTILW---------------NVISGTVMQHFELKETGGSSI-----NAENHSGDGS 207
Query: 147 FTVSHSEEITCFTVTW--DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAV 204
V V W D +++I G + ++ V+Q+ L+GH +S +
Sbjct: 208 LGVD---------VEWVDDDKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND 257
Query: 205 TNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTV 251
TNK L++S S D L +W G ++ GH + GD V
Sbjct: 258 TNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 10 VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQS 69
V+Q+ + GH +S + + + +S S+D T ++W G+ + F H
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL 103
+I++ + + D +V++ G + +W LL
Sbjct: 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 22 MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ GH ++ +PN + + +S S+D+T +W + +T K H+ + D+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 223
Query: 81 RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
+ + T A V V W LL+ +L S D L IW T
Sbjct: 224 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 264
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
+H+ E+ C + S++++ TGS D ++ +W + KL H D +
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAGDGTVAMSDL 256
V + N++++ S D L VWD+ GEE G + + G T +SD
Sbjct: 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384
Query: 257 P--PSRP 261
P+ P
Sbjct: 385 SWNPNEP 391
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 14 NSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGL-TLGSVVSTFKSHQSTI 71
N+ + T++ H V+C++ +P S F + +GS D T +W L L + +F+SH+ I
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324
Query: 72 LAVAVLSDSRRVVTSDKAGV-IAVW----VADNAQLLYSALGPSKCLTVT--HNMKY--- 121
V + ++ S + VW + + + GP + L + H K
Sbjct: 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384
Query: 122 ---------IVSGDGDNSLRIWPTSPQTHKDDE 145
I S DN +++W + + D+E
Sbjct: 385 SWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 417
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSH 67
+ VW +++ L +GH + SC+ IS + +G DNT + W L G +
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDF 223
Query: 68 QSTILAVAVLSDSRRV---VTSDKAGVIAVWVADNAQL-LYSALGPSKCLTVTHNMKYIV 123
S I ++ + + S V+ V D QL L+ + S L + K+ V
Sbjct: 224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS--LKFAYCGKWFV 281
Query: 124 SGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
S DN L W +T F S + ++ D +Y++TGS D V++V+
Sbjct: 282 STGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 113 LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKD--DERFTVSHSEEITCFTVTWDSQYLITG 170
+T+++ +++ +G G +++W S +K + ++ I + D LI G
Sbjct: 57 VTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
Query: 171 SRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVV-SGSKDSNLIVWDMETGGE 229
+L +W + + +C A+A++ S V S D N+ VWD+
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 230 EHFLAGHLGCVTCVKLAGDGT 250
GH +C+ ++ DGT
Sbjct: 176 VRQFQGHTDGASCIDISNDGT 196
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 39/247 (15%)
Query: 22 MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ GH ++ +PN + + +S S+D+T +W + +T K H+ + D+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 225
Query: 81 RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
+ + T A V V W LL+ +L S D L IW T
Sbjct: 226 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 266
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
+H+ E+ C + S++++ TGS D ++ +W + KL H D +
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA-GHLGCVTCVKLAGDGTVAMSDL 256
V + N++++ S D L VWD+ GEE G + + G T +SD
Sbjct: 327 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 386
Query: 257 P--PSRP 261
P+ P
Sbjct: 387 SWNPNEP 393
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 14 NSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGL-TLGSVVSTFKSHQSTI 71
N+ + T++ H V+C++ +P S F + +GS D T +W L L + +F+SH+ I
Sbjct: 267 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 326
Query: 72 LAVAVLSDSRRVVTSDKAGV-IAVW----VADNAQLLYSALGPSKCLTVT--HNMKY--- 121
V + ++ S + VW + + + GP + L + H K
Sbjct: 327 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 386
Query: 122 ---------IVSGDGDNSLRIWPTSPQTHKDDE 145
I S DN +++W + + D+E
Sbjct: 387 SWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 419
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 22 MEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ GH ++ +PN + + +S S+D+T +W + +T K H+ + D+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-----ATPKEHR--------VIDA 227
Query: 81 RRVVTSDKAGVIAV-WVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQ 139
+ + T A V V W LL+ +L S D L IW T
Sbjct: 228 KNIFTGHTAVVEDVAW-----HLLHESLFGSVA--------------DDQKLMIWDTRNN 268
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKLA-QVLVGHTDHV 197
+H+ E+ C + S++++ TGS D ++ +W + KL H D +
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
V + N++++ S D L VWD+ GEE
Sbjct: 329 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 14 NSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGL-TLGSVVSTFKSHQSTI 71
N+ + T++ H V+C++ +P S F + +GS D T +W L L + +F+SH+ I
Sbjct: 269 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 328
Query: 72 LAVAVLSDSRRVVTSDKAGV-IAVW----VADNAQLLYSALGPSKCLTVT--HNMKY--- 121
V + ++ S + VW + + + GP + L + H K
Sbjct: 329 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 388
Query: 122 ---------IVSGDGDNSLRIWPTSPQTHKDDE 145
I S DN +++W + + D+E
Sbjct: 389 SWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 421
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 128 DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLI-TGSRDMSLKVWQVVGGKL 186
D L IW T +H+ E+ C + S++++ TGS D ++ +W + KL
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 187 A-QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
H D + V + N++++ S D L VWD+ GEE
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE 353
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 41/223 (18%)
Query: 158 FTVTWD---SQYLITGSRDMSLKVWQVVG----GKLAQ---VLVGHTDHVSCVAVAVTNK 207
+ ++W+ S +L++ S D ++ +W + GK+ + GHT V V+ + ++
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE 240
Query: 208 SLVVSGSKDSNLIVWDM---ETGGEEHFLAGHLGCVTCVKL-----------AGDGTVAM 253
SL S + D L++WD T H + H V C+ + D TVA+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 254 SDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASM 313
DL R L+ L S +Q ++ +I+ ++ +R + +S
Sbjct: 301 WDL---------RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 314 EEISKIPIKDNVGSQGLGPEQAALAQSQHFDQLEAL-WNKKSP 355
EE S +D GP + H ++ WN P
Sbjct: 352 EEQSPEDAED-------GPPELLFIHGGHTAKISDFSWNPNEP 387
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
+++ SG DN + +WP++P + FT W S L TG + D
Sbjct: 254 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 313
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+++W V G + H+ S + + + G + L++W T + L G
Sbjct: 314 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 373
Query: 236 HLGCVTCVKLAGDGTVAMS 254
H V + ++ DG S
Sbjct: 374 HTSRVLSLTMSPDGATVAS 392
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTFKSHQSTILAVA 75
+T+ GH V + +P+ SG DN VW G + TF HQ + AVA
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 76 VLSDSRRVV-----TSDKAGVIAVWVADNAQLLYSALGPSKCLTV--THNMKYIVSGDG- 127
V+ TSD+ I +W + L + S+ ++ + + K ++SG G
Sbjct: 295 WCPWQSNVLATGGGTSDRH--IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 352
Query: 128 -DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
N L IW P K E H+ + T++ D + + + D +L++W+
Sbjct: 353 AQNQLVIW-KYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 2 GGMDCLVNVWQMNSHE-----LQSTMEGHLNTVSCVAISP---NSIFAVSGSEDNTAKVW 53
GG D LVNVW E LQ T H V VA P N + G+ D ++W
Sbjct: 259 GGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSALGPSK 111
+ G+ +S +H S + ++ + +++ + +W + G +
Sbjct: 318 NVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 376
Query: 112 ---CLTVTHNMKYIVSGDGDNSLRIW---PTSPQTHKDDERFTVSHSEEI 155
LT++ + + S D +LR+W P ++ E+ + + S I
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 426
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 23/196 (11%)
Query: 47 DNTAKVWGLTLGSVVSTFKSHQ--STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY 104
DN+ +W + G ++ + Q I +VA + + + + + +W + L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 105 SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF------TVS-HSEEITC 157
+ S + YI+S G S I H D R T+S HS+E+
Sbjct: 195 NMTSHSARVGSLSWNSYILS-SGSRSGHI-------HHHDVRVAEHHVATLSGHSQEVCG 246
Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLA----QVLVGHTDHVSCVAVAVTNKSLVVS- 212
D ++L +G D + VW G+ Q H V VA +++ +
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 306
Query: 213 -GSKDSNLIVWDMETG 227
G+ D ++ +W++ +G
Sbjct: 307 GGTSDRHIRIWNVCSG 322
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
+++ SG DN + +WP++P + FT W S L TG + D
Sbjct: 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+++W V G + H+ S + + + G + L++W T + L G
Sbjct: 303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362
Query: 236 HLGCVTCVKLAGDGTVAMS 254
H V + ++ DG S
Sbjct: 363 HTSRVLSLTMSPDGATVAS 381
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTFKSHQSTILAVA 75
+T+ GH V + +P+ SG DN VW G + TF HQ + AVA
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 76 VLSDSRRVV-----TSDKAGVIAVWVADNAQLLYSALGPSKCLTV--THNMKYIVSGDG- 127
V+ TSD+ I +W + L + S+ ++ + + K ++SG G
Sbjct: 284 WCPWQSNVLATGGGTSDRH--IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341
Query: 128 -DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
N L IW P K E H+ + T++ D + + + D +L++W+
Sbjct: 342 AQNQLVIW-KYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 2 GGMDCLVNVWQMNSHE-----LQSTMEGHLNTVSCVAISP---NSIFAVSGSEDNTAKVW 53
GG D LVNVW E LQ T H V VA P N + G+ D ++W
Sbjct: 248 GGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSD--KAGVIAVWVADNAQLLYSALGPSK 111
+ G+ +S +H S + ++ + +++ + +W + G +
Sbjct: 307 NVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365
Query: 112 ---CLTVTHNMKYIVSGDGDNSLRIW---PTSPQTHKDDERFTVSHSEEI 155
LT++ + + S D +LR+W P ++ E+ + + S I
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 23/197 (11%)
Query: 47 DNTAKVWGLTLGSVVSTFKSHQ--STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY 104
DN+ +W + G ++ + Q I +VA + + + + + +W + L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 105 SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF------TVS-HSEEITC 157
+ S + YI+S G S I H D R T+S HS+E+
Sbjct: 184 NMTSHSARVGSLSWNSYILS-SGSRSGHI-------HHHDVRVAEHHVATLSGHSQEVCG 235
Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLA----QVLVGHTDHVSCVAVAVTNKSLVVS- 212
D ++L +G D + VW G+ Q H V VA +++ +
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295
Query: 213 -GSKDSNLIVWDMETGG 228
G+ D ++ +W++ +G
Sbjct: 296 GGTSDRHIRIWNVCSGA 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLI 168
C M I G + + P +T + D+ + + W + +
Sbjct: 40 CAVNPKFMALIXEASGGGAFLVLPLG-KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIA 98
Query: 169 TGSRDMSLKVWQVVGGKLAQ-------VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+GS D ++ VW++ G L L GHT V VA T +++++S D+ ++V
Sbjct: 99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILV 158
Query: 222 WDMETG 227
WD+ TG
Sbjct: 159 WDVGTG 164
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGG--------------KLAQVLVGHTDHVS 198
E++ TWDS + + M+L GG K ++ GHT V
Sbjct: 26 EDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVL 85
Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGG 228
+A N +++ SGS+D ++VW++ GG
Sbjct: 86 DIAWXPHNDNVIASGSEDCTVMVWEIPDGG 115
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 45/199 (22%)
Query: 30 SCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS--HQSTILAVAVLSDSRRVVTSD 87
SCVA+S + F G +D+ V+ L+ G+ VS K+ H + I +VA ++ +V +D
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLS-GASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510
Query: 88 KA-GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDER 146
++ VI VA+N +L H +
Sbjct: 511 QSRKVIPYSVANNFEL-------------------------------------AHTNSWT 533
Query: 147 FTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV-AVAVT 205
F H+ ++ C + + D+ L TGS D S+ VW + +++ +S V +V
Sbjct: 534 F---HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
Query: 206 NKSLVVSGSKDSNLIVWDM 224
N++ +VS +DSN+ W++
Sbjct: 591 NETTIVSAGQDSNIKFWNV 609
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 99/257 (38%), Gaps = 44/257 (17%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIF-AVSGSEDNTAKVWGLTLGSVV 61
G + +V+ ++ + G ++ V P+ F +SGS+DNT ++
Sbjct: 124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 183
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
STF H + +V D ++ G I +LY+ +
Sbjct: 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTI---------VLYNGV-------------- 220
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW--DSQYLITGSRDMSLKVW 179
DG T +DD V+HS + F +TW D + + S D ++K+W
Sbjct: 221 ----DG--------TKTGVFEDDSLKNVAHSGSV--FGLTWSPDGTKIASASADKTIKIW 266
Query: 180 QVVGGKLAQVL-VGHTDHVSCVAVAVTNKSLV-VSGSKDSNLIVWDMETGGEEHFLAGHL 237
V K+ + + VG + + T ++LV +S + N + + E G + GH
Sbjct: 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV--NPELGSIDQVRYGHN 324
Query: 238 GCVTCVKLAGDGTVAMS 254
+T + + DG S
Sbjct: 325 KAITALSSSADGKTLFS 341
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 14 NSHELQSTME--GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL 55
N+ EL T H V+CV+ SP+++ +GS DN+ VW +
Sbjct: 522 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV 210
H + ++ +V ++GS+D+ +KVW + + H V+CVA + S+
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 211 VSGSKDSNLIVWDMETGGEEHFLAGHLGC 239
+S S+D+ +++WD A +GC
Sbjct: 186 LSCSEDNRILLWDTRCPKP----ASQIGC 210
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGS 59
G D + VW + + S+ H V+CVA SP +S+F +S SEDN +W
Sbjct: 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF-LSCSEDNRILLWDTRCPK 203
Query: 60 VVSTFKSHQSTILAVAVL---SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT-- 114
S L ++ S V D+ G +++ + + S+ S+C+T
Sbjct: 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263
Query: 115 --VTHNMKYIVSGDGDNSLRIWPTS------PQTHKDDER-FTVSHSEEITCFTVTWDSQ 165
H++ ++ S D SL + +S Q H+D R T S TV WD Q
Sbjct: 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ 323
Query: 166 YL 167
+
Sbjct: 324 VV 325
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 8 VNVWQMNSHEL----QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
V +W+++ +E + H + VS V++ + AVSGS+D KVW L V+S+
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164
Query: 64 FKSHQSTILAVA 75
+++H + + VA
Sbjct: 165 YRAHAAQVTCVA 176
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
H D VS V+V +++ + VSGSKD + VWD+ H VTCV
Sbjct: 126 HDDIVSTVSV-LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHK--DDERFTVSHSEEITCFTVTWDSQYLITG--SRDMS 175
+++ SG DN + +WP++P + FT W S L TG + D
Sbjct: 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
+++W V G + H+ S + + + G + L++W T + L G
Sbjct: 223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282
Query: 236 HLGCVTCVKLAGDGTVAMS 254
H V + ++ DG S
Sbjct: 283 HTSRVLSLTMSPDGATVAS 301
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS----VVSTFKSHQSTILAVA 75
+T+ GH V + +P+ SG DN VW G + TF HQ + AVA
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 76 VLSDSRRVV-----TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY--IVSGDG- 127
V+ TSD+ I +W + L + S+ ++ + Y ++SG G
Sbjct: 204 WCPWQSNVLATGGGTSDRH--IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261
Query: 128 -DNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
N L IW P K E H+ + T++ D + + + D +L++W+
Sbjct: 262 AQNQLVIW-KYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 2 GGMDCLVNVWQMNSHE-----LQSTMEGHLNTVSCVAISP---NSIFAVSGSEDNTAKVW 53
GG D LVNVW E LQ T H V VA P N + G+ D ++W
Sbjct: 168 GGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Query: 54 GLTLGSVVSTFKSH 67
+ G+ +S +H
Sbjct: 227 NVCSGACLSAVDAH 240
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 23/196 (11%)
Query: 47 DNTAKVWGLTLGSVVSTFKSHQ--STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLY 104
DN+ +W + G ++ + Q I +VA + + + + + +W + L
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 105 SALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERF------TVS-HSEEITC 157
+ S + YI+S G S I H D R T+S HS+E+
Sbjct: 104 NMTSHSARVGSLSWNSYILS-SGSRSGHI-------HHHDVRVAEHHVATLSGHSQEVCG 155
Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLA----QVLVGHTDHVSCVAVAVTNKSLVVS- 212
D ++L +G D + VW G+ Q H V VA +++ +
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215
Query: 213 -GSKDSNLIVWDMETG 227
G+ D ++ +W++ +G
Sbjct: 216 GGTSDRHIRIWNVCSG 231
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLI 168
C M I G + + P +T + D+ + + W + +
Sbjct: 40 CAVNPKFMALICEASGGGAFLVLPLG-KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA 98
Query: 169 TGSRDMSLKVWQVVGGKLAQ-------VLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+GS D ++ VW++ G L L GHT V VA T +++++S D+ ++V
Sbjct: 99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 222 WDMETG 227
WD+ TG
Sbjct: 159 WDVGTG 164
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 153 EEITCFTVTWDSQYLITGSRDMSLKVWQVVGG--------------KLAQVLVGHTDHVS 198
E++ TWDS + + M+L GG K ++ GHT V
Sbjct: 26 EDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVL 85
Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGG 228
+A N +++ SGS+D ++VW++ GG
Sbjct: 86 DIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 115/295 (38%), Gaps = 40/295 (13%)
Query: 13 MNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLT---LGSVVSTFKSHQS 69
++L +T++GH V V +S A S S D T ++W LG+VV T Q
Sbjct: 5 FTGYQLSATLKGHDQDVRDVVAVDDSKVA-SVSRDGTVRLWSKDDQWLGTVVYT---GQG 60
Query: 70 TILAVAVLSDSRRVVTSDKAGVI---AVWVADNAQLLYSALG-PSKCLTVTHNMKYIVSG 125
+ +V S+ ++ K I ++ LY+ +G +++ ++SG
Sbjct: 61 FLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISG 120
Query: 126 DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGK 185
D + ++W + ++ V++ +T S D ++K+WQ K
Sbjct: 121 SWDKTAKVWKEGSLVY----NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDK 174
Query: 186 LAQVLVG-HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVK 244
+ + G H D V +AV + +S S D + + D TG GH V C+K
Sbjct: 175 VIKTFSGIHNDVVR--HLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIK 232
Query: 245 LAGDGTVAMSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAV 299
L +G + G R +R W ++ G L I + A+
Sbjct: 233 LLPNGDIV--------SCGEDRTVR------------IWSKENGSLKQVITLPAI 267
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 21/233 (9%)
Query: 1 MGGMDCLVN---VWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTL 57
GG D +N ++ + + T+ GH V ++ + +SGS D TAKVW
Sbjct: 76 FGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVV--ISGSWDKTAKVW--KE 131
Query: 58 GSVVSTFKSHQSTILAVAVLSDSR-RVVTSDKAGVIAVWVADNAQLLYSALGPS--KCLT 114
GS+V ++H +++ V+S S + +T+ I +W D +S + + L
Sbjct: 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLA 191
Query: 115 VTHNMKYI-VSGDGDNSLRIWPTSPQTHKDDE-RFTVSHSEEITCFTVTWDSQYLITGSR 172
V + +I S DG L H D R H + C + + +++
Sbjct: 192 VVDDGHFISCSNDGLIKL------VDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGE 244
Query: 173 DMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
D ++++W G L QV+ +S +V + ++ GS D+ + ++ E
Sbjct: 245 DRTVRIWSKENGSLKQVIT--LPAISIWSVDCXSNGDIIVGSSDNLVRIFSQE 295
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV 210
H + + +V D ++G +D S+KVW + + + H+ V+CVA ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 211 VSGSKDSNLIVWD 223
+S +D +++WD
Sbjct: 198 LSCGEDGRILLWD 210
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVV 84
H + V +++ + AVSG +D + KVW L+ +V+ ++ +H S + VA +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 85 TS-DKAGVIAVW 95
S + G I +W
Sbjct: 198 LSCGEDGRILLW 209
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVW 53
GG D V VW ++ + + H + V+CVA P ++IF +S ED +W
Sbjct: 157 GGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF-LSCGEDGRILLW 209
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 2 GGMDCLVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSI---FAVSGSEDNTAKVW 53
GG D LV +W+ NS + L+ST+EGH + V VA SP + + S S+D T +W
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 161 TWDSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVA--VTNKSLVVSGS 214
T +S+ +TG D +K+W+ L L GH+D V VA + V +S + S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 215 KDSNLIVW--DMETG 227
+D I+W D E G
Sbjct: 227 QDRTCIIWTQDNEQG 241
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 2 GGMDCLVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSI---FAVSGSEDNTAKVW 53
GG D LV +W+ NS + L+ST+EGH + V VA SP + + S S+D T +W
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 163 DSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVA--VTNKSLVVSGSKD 216
+S+ +TG D +K+W+ L L GH+D V VA + V +S S S+D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Query: 217 SNLIVW--DMETG 227
I+W D E G
Sbjct: 229 RTCIIWTQDNEQG 241
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 2 GGMDCLVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSI---FAVSGSEDNTAKVW 53
GG D LV +W+ NS + L+ST+EGH + V VA SP + + S S+D T +W
Sbjct: 178 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 163 DSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVA--VTNKSLVVSGSKD 216
+S+ +TG D +K+W+ L L GH+D V VA + V +S + S S+D
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 217 SNLIVW--DMETG 227
I+W D E G
Sbjct: 231 RTCIIWTQDNEQG 243
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 2 GGMDCLVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSI---FAVSGSEDNTAKVW 53
GG D LV +W+ NS + L+ST+EGH + V VA SP + + S S+D T +W
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 163 DSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVA--VTNKSLVVSGSKD 216
+S+ +TG D +K+W+ L L GH+D V VA + V +S + S S+D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 217 SNLIVW--DMETG 227
I+W D E G
Sbjct: 229 RTCIIWTQDNEQG 241
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 2 GGMDCLVNVWQMNS----HELQSTMEGHLNTVSCVAISPNSI---FAVSGSEDNTAKVW 53
GG D LV +W+ NS + L+ST+EGH + V VA SP + + S S+D T +W
Sbjct: 176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 163 DSQYLITGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCVAVA--VTNKSLVVSGSKD 216
+S+ +TG D +K+W+ L L GH+D V VA + V +S + S S+D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 217 SNLIVW--DMETG 227
I+W D E G
Sbjct: 229 RTCIIWTQDNEQG 241
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
+G + + V N + + + H++ ++ + P+ +S S+D K+W + GS
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
T H++T+ +A++ R V+++ G I +W
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + T+ GH TV+ +AI +S S D T ++W G+ + TF
Sbjct: 157 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVS 124
+R+ D IA++V + QL + L KY+++
Sbjct: 217 ---------------NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 261
Query: 125 G--DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD---SQYLITGSRDMSLKVW 179
G G ++ + QT + +FT S C ++T D + Y+ G + L W
Sbjct: 262 GHVSGVITVHNVFSKEQTIQLPSKFTCS------CNSLTVDGNNANYIYAGYENGMLAQW 315
Query: 180 QV 181
+
Sbjct: 316 DL 317
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
+G + + V N + + + H++ ++ + P+ +S S+D K+W + GS
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
T H++T+ +A++ R V+++ G I +W
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 26/182 (14%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D + +W + T+ GH TV+ +AI +S S D T ++W G+ + TF
Sbjct: 160 DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Query: 65 KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVS 124
+R+ D IA++V + QL + L KY+++
Sbjct: 220 ---------------NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264
Query: 125 G--DGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD---SQYLITGSRDMSLKVW 179
G G ++ + QT + +FT S C ++T D + Y+ G + L W
Sbjct: 265 GHVSGVITVHNVFSKEQTIQLPSKFTCS------CNSLTVDGNNANYIYAGYENGMLAQW 318
Query: 180 QV 181
+
Sbjct: 319 DL 320
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS-------VVSTFKSHQSTILAVAV 76
H + VA P++ +GS D+T +W + +++ + H++ + VA
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 77 LSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV----THNMKYIV--------- 123
+D + T + + +W D + Y +C++V + ++K+++
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEY------ECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 124 SGDGDNSLRIWPTSPQTHKDD-ERFTVSHSEEITCFTVTWDSQ----YLITGSRDMSLKV 178
S D+++RIW + + DD E V + E T ++ +D L +GS D +++V
Sbjct: 170 SSSYDDTVRIW----KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 179 WQVVG 183
W+ +G
Sbjct: 226 WKYMG 230
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/254 (19%), Positives = 95/254 (37%), Gaps = 32/254 (12%)
Query: 2 GGMDCLVNVW-------QMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWG 54
G D V++W + +L + +EGH N V VA S + + + S D + +W
Sbjct: 76 GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 55 LTLG----SVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW--VADNAQLLYSALG 108
+S + H + V + +S + +W D+ + + G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 109 P-----SKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS------HSEEITC 157
S T + + SG D+++R+W D + + H ++
Sbjct: 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV-- 253
Query: 158 FTVTWDSQYLITG-SRDMSLKVWQVVGGK---LAQVLVGHTDHVSCVA--VAVTNKSLVV 211
+ V W LI D L V++ V G+ A+ + H + V + + K+++
Sbjct: 254 YNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313
Query: 212 SGSKDSNLIVWDME 225
+G D + W +E
Sbjct: 314 TGGDDGIVNFWSLE 327
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 23 EGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SVVSTFKSHQSTILAVAVLSDS 80
EGH TV VA SP + S S D T +W V+T + H++ + +VA
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV----THNMKYIV---------SGDG 127
+ T + + VW D +C++V T ++K++V S
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEY-------ECVSVLNSHTQDVKHVVWHPSQELLASASY 170
Query: 128 DNSLRIWPTSPQTHKDDERFTVS-HSEEITCFTVTWD--SQYLITGSRDMSLKVWQVVGG 184
D++++++ + +DD + E T +++ +D Q L + S D ++++W+
Sbjct: 171 DDTVKLY----REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR---- 222
Query: 185 KLAQVLVGHTDHVSC 199
Q L G+ V+C
Sbjct: 223 ---QYLPGNEQGVAC 234
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 94/262 (35%), Gaps = 48/262 (18%)
Query: 4 MDCLVNVWQMNSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--- 58
D +W+ N + + +T+EGH N V VA +P+ + S D + VW +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 59 SVVSTFKSHQSTI-----------LAVAVLSDSRRVV--TSDKAGVIAVWVADNAQLLYS 105
VS SH + LA A D+ ++ D A + +
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 106 ALGPSKCLTVTHNMKYIVSGDGDNSLRIW----PTSPQ---THKDDERF----TVSHSEE 154
A PS + + S D ++RIW P + Q D + T+S
Sbjct: 201 AFDPSG--------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 155 ITCFTVTWD--SQYLITGSRDMSLKVW---------QVVGGKLAQVLVGHTDHVSCVAVA 203
T + + W + L T D +++V+ Q A + H+ V+CVA
Sbjct: 253 RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312
Query: 204 VTNKSLVVSGSKDSNLIVWDME 225
L+ S S D + W +
Sbjct: 313 PKEPGLLASCSDDGEVAFWKYQ 334
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
D +VW + E T++GH T+ + + + + V+GS D + K+W ++ G V+T+
Sbjct: 53 DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW 112
Query: 65 KS 66
KS
Sbjct: 113 KS 114
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%)
Query: 9 NVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQ 68
N++ SH + GH ++ V + S S+D++A VW G + T H
Sbjct: 15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74
Query: 69 STILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL 103
TI ++ V ++ VT I +W N Q +
Sbjct: 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV 210
H +T + L + S+D S VW + G+ L GHT + + V K
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK-YC 89
Query: 211 VSGSKDSNLIVWDMETG 227
V+GS D ++ +WD+ G
Sbjct: 90 VTGSADYSIKLWDVSNG 106
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 154 EITCFTVTWDSQYLITGSRDMSLKVWQVVGGK 185
++ CFT +Y +TGS D S+K+W V G+
Sbjct: 81 DVDCFT-----KYCVTGSADYSIKLWDVSNGQ 107
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 21/157 (13%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISP---NSIFAVSGSEDNTAKVWGLTLG 58
GG D +V +W S + T H V VA P N + G+ D W G
Sbjct: 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 59 SVVST-----------FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWV---ADNAQLLY 104
+ V+T + H I++ D+ + S + + V A + ++LY
Sbjct: 295 ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLY 354
Query: 105 SALGPSKCLTVT----HNMKYIVSGDGDNSLRIWPTS 137
SAL P + T N+K+ DGD+ R P +
Sbjct: 355 SALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT 391
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 12 QMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTI 71
++ +H++ T++GH + V +A + + SG DN ++W T +H + +
Sbjct: 204 RIANHQI-GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 72 LAVAVLSDSRRVV-----TSDKAGVIAVWVADNAQLLYSALGPSKC--LTVTHNMKYIVS 124
AVA ++ T DK I W A + + S+ L + + K I+S
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQ--IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS 320
Query: 125 GDG--DNSLRIWPTSPQ--THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
G DN+L IW S T + D +H + ++ D + L T + D +LK W+
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVD---IPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Query: 181 VVGG 184
V G
Sbjct: 378 VYDG 381
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 89/258 (34%), Gaps = 52/258 (20%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS- 59
+G + LV+++ + S TM GH V C +S N SGS + + +
Sbjct: 151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGC--LSWNRHVLSSGSRSGAIHHHDVRIANH 208
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNM 119
+ T + H S + +A W +D QL
Sbjct: 209 QIGTLQGHSSEVCGLA-------------------WRSDGLQL----------------- 232
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFT-VSHSEEITCFT-VTWDSQYLIT--GSRDMS 175
SG DN ++IW K FT +H+ + W S L T G+ D
Sbjct: 233 ---ASGGNDNVVQIWDARSSIPK----FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGG--EEHFL 233
+ W G + + S + + + + G D+NL +W + G ++ +
Sbjct: 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Query: 234 AGHLGCVTCVKLAGDGTV 251
H V L+ DG +
Sbjct: 346 PAHDTRVLYSALSPDGRI 363
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 23/216 (10%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV-SGSEDNTAKVWGLTLGSVVSTFKS 66
V + + S ++GH + V+ SP + + + S D+ K+W + S
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGD 126
+ + AV +S + K + + +D LL + + M+ S +
Sbjct: 228 QHNGKKSQAV--ESANTAHNGKVNGLC-FTSDGLHLL--------TVGTDNRMRLWNSSN 276
Query: 127 GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL 186
G+N+L + K +FTVS V + S ++ V+ V G+
Sbjct: 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS----------TIAVYTVYSGEQ 326
Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
+L GH V C V +N + SGS+D N++ W
Sbjct: 327 ITMLKGHYKTVDC-CVFQSNFQELYSGSRDCNILAW 361
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 141 HKDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLKVWQVVGGKLAQVL----VGH 193
H D R++V TV W D+ + S D +LKVW + A V +
Sbjct: 94 HPDVHRYSVE--------TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY 145
Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+ H+S V+ T LV G++ + + D+++G H L GH
Sbjct: 146 SHHMSPVS---TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH 185
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVS-HSEEITCFTVTWDSQYLITGSRDMS 175
H+ S D +L++W T+ D F + +S ++ V+ + G+R
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS--PVSTKHCLVAVGTRGPK 167
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDM 224
+++ + G + +L GH + V+ + ++ + S DS + +WD+
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 26/171 (15%)
Query: 79 DSRRVVTSDKAGVIAVWVAD-NAQLL---------YSALGP-------SKCLTVTHNMKY 121
D R+V + G + V++ N Q L + GP + C V N
Sbjct: 103 DQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHTGPGSPSYSSAPCTGVVCNNPE 162
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITGSRDMSLKVWQ 180
IV+ D + ++ HK+ R T+ +++ T VT+ + ++T + LK+W
Sbjct: 163 IVTVGEDGRINLFRAD---HKEAVR-TIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD 218
Query: 181 V--VGGKLAQVLVGHTDHVS--CVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
G + +Q+L D V CV + +V +G +D L +WD+ G
Sbjct: 219 FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 13/112 (11%)
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEI---TCFTVTW--DSQYLITGSRDMS 175
++++G N +R W D T+ ++++ V W D + T S D +
Sbjct: 56 FLIAGSWANDVRCWEVQ------DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109
Query: 176 LKVWQVVGGKLAQVLVGHTDHVSCVA-VAVTNKSLVVSGSKDSNLIVWDMET 226
K+W + + Q+ H V + + N S V++GS D L WD +
Sbjct: 110 AKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
>pdb|3IR4|A Chain A, 1.2 Angstrom Crystal Structure Of The Glutaredoxin 2
(Grxb) From Salmonella Typhimurium In Complex With
Glutathione
Length = 218
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW-QVVGGKLAQVLV 191
P KDD R+ + S +I + D + L+TG R+ +++ W + V G + Q+L+
Sbjct: 52 PILQKDDSRY-LPESXDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLL 105
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 13 MNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTF---KSHQ 68
M+ EL + + H V+ VA++P F + S D T K+W L ++F H+
Sbjct: 238 MDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 69 STILAVAVLSDSRRVVTSDKAGVIAVWVA 97
+ A D R++T+D+ I V+ A
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSA 325
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 58 GSVVSTFKSHQST---ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT 114
G+++ F S + ++ V + SR VVT D G + + D +L + K
Sbjct: 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255
Query: 115 VTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
V N ++ + D +++IW K +++ H + + D L+T
Sbjct: 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315
Query: 172 RDMSLKVW 179
+ ++V+
Sbjct: 316 QKSEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 13 MNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTF---KSHQ 68
M+ EL + + H V+ VA++P F + S D T K+W L ++F H+
Sbjct: 238 MDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHR 296
Query: 69 STILAVAVLSDSRRVVTSDKAGVIAVWVA 97
+ A D R++T+D+ I V+ A
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSA 325
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 58 GSVVSTFKSHQST---ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT 114
G+++ F S + ++ V + SR VVT D G + + D +L + K
Sbjct: 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255
Query: 115 VTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
V N ++ + D +++IW K +++ H + + D L+T
Sbjct: 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315
Query: 172 RDMSLKVW 179
+ ++V+
Sbjct: 316 QKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 12 QMNSHELQSTMEGHLNTVSCVAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTF---KSH 67
M+ EL + + H V+ VA++P F + S D T K+W L ++F H
Sbjct: 238 NMDGKELWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 296
Query: 68 QSTILAVAVLSDSRRVVTSDKAGVIAVWVA 97
+ + A D R++T+D+ I V+ A
Sbjct: 297 RHPVNAACFSPDGARLLTTDQKSEIRVYSA 326
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 58 GSVVSTFKSHQST---ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT 114
G+++ F S + ++ V + SR VVT D G + + D +L + K
Sbjct: 197 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 256
Query: 115 VTHNMK---YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
V N ++ + D +++IW K +++ H + + D L+T
Sbjct: 257 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 316
Query: 172 RDMSLKVW 179
+ ++V+
Sbjct: 317 QKSEIRVY 324
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS 312
+S L P R + P ++ ++ D Y ++RK+G S+ + AV+ R S SAS
Sbjct: 391 ISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFG---KSVAVVAVN----RNLSTSAS 443
Query: 313 MEEIS 317
+ +S
Sbjct: 444 ITGLS 448
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS 312
+S L P R + P ++ ++ D Y ++RK+G S+ + AV+ R S SAS
Sbjct: 385 ISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFG---KSVAVVAVN----RNLSTSAS 437
Query: 313 MEEIS 317
+ +S
Sbjct: 438 ITGLS 442
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS 312
+S L P R + P ++ ++ D Y ++RK+G S+ + AV+ R S SAS
Sbjct: 391 ISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFG---KSVAVVAVN----RNLSTSAS 443
Query: 313 MEEIS 317
+ +S
Sbjct: 444 ITGLS 448
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS 312
+S L P R + P ++ ++ D Y ++RK+G S+ + AV+ R S SAS
Sbjct: 391 ISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFG---KSVAVVAVN----RNLSTSAS 443
Query: 313 MEEIS 317
+ +S
Sbjct: 444 ITGLS 448
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 253 MSDLPPSRPAGPKRPLRRLLKKEVSLDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSAS 312
+S L P R + P ++ ++ D Y ++RK+G S+ + AV+ R S SAS
Sbjct: 391 ISKLAPLRKSNPAIAYGSTQQRWINNDVYVYERKFG---KSVAVVAVN----RNLSTSAS 443
Query: 313 MEEIS 317
+ +S
Sbjct: 444 ITGLS 448
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 109 PSKCLTV---THNMKYIVSGDGDNSLRIW----PTSPQTHKDDERFTVSHSEEITCFTVT 161
P KC T + +Y+ +GD +L IW P P + ++ + I +
Sbjct: 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIG 126
Query: 162 WDSQYLITGSRDMSLKVW 179
+ ++TGSRD ++KVW
Sbjct: 127 EGAPEIVTGSRDGTVKVW 144
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 144 DERFT----VSHSEEITCFTVTWDS---QYLITGSRDMSLKVWQVVGGKLAQV-LVGHTD 195
+E+FT + H +T + DS Q++IT RD +K+ + L GH
Sbjct: 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242
Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
VS + L++S D + WD +TG
Sbjct: 243 FVSSICCG--KDYLLLSAGGDDKIFAWDWKTG 272
>pdb|3MWP|A Chain A, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|B Chain B, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWP|C Chain C, Nucleoprotein Structure Of Lassa Fever Virus
pdb|3MWT|A Chain A, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|B Chain B, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MWT|C Chain C, Crystal Structure Of Lassa Fever Virus Nucleoprotein In
Complex With Mn2+
pdb|3MX2|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX2|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Dttp
pdb|3MX5|A Chain A, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|B Chain B, Lassa Fever Virus Nucleoprotein Complexed With Utp
pdb|3MX5|C Chain C, Lassa Fever Virus Nucleoprotein Complexed With Utp
Length = 577
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
G+ +G++ S + +L + +S + + + GV+ VW NA+LL + G L
Sbjct: 131 GVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDVKNAELLNNQFGTMPSL 190
Query: 114 TV 115
T+
Sbjct: 191 TL 192
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALG--PS- 110
G+ +G++ S + +L + +++ + + + GV+ VW NA+LL + G PS
Sbjct: 123 GVYMGNLSSQQLDQRRALLNLIGMTNGSQGSQAGRDGVVRVWDVKNAELLNNQFGTMPSL 182
Query: 111 --KCLTVTH--NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
CLT ++ +V D L P T D +R T SH
Sbjct: 183 TLACLTKQGQVDLNDVVQALTDLGLIYTAKYPNTS-DLDRLTQSH 226
>pdb|3T5Q|A Chain A, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|B Chain B, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|E Chain E, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|G Chain G, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|I Chain I, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
pdb|3T5Q|K Chain K, 3a Structure Of Lassa Virus Nucleoprotein In Complex With
Ssrna
Length = 353
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
G+ +G++ S + +L + +S + + + GV+ VW NA+LL + G L
Sbjct: 136 GVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDVKNAELLSNQFGTMPSL 195
Query: 114 TV 115
T+
Sbjct: 196 TL 197
>pdb|3T5N|A Chain A, 1.8a Crystal Structure Of Lassa Virus Nucleoprotein In
Complex With Ssrna
Length = 354
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 54 GLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
G+ +G++ S + +L + +S + + + GV+ VW NA+LL + G L
Sbjct: 137 GVYMGNLSSQQLDQRRALLNMIGMSGGNQGARAGRDGVVRVWDVKNAELLSNQFGTMPSL 196
Query: 114 TV 115
T+
Sbjct: 197 TL 198
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 96/284 (33%), Gaps = 70/284 (24%)
Query: 29 VSCVAISP--NSIFAVSGSEDNTAKVWGLTLG--------SVVSTFKSHQSTILAVAVLS 78
V+ V SP S + SG E VWG T +V S F+ I ++
Sbjct: 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 126
Query: 79 DSRRVVT----SDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-----NMKYIVSGDGDN 129
+ RR+ D GV W D+ L G S+ + H M+ + GD D
Sbjct: 127 EGRRLCVVGEGRDNFGVFISW--DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD-DG 183
Query: 130 SLRIWPTSP-------QTHKDDERF---------------TVSHSEEITCF--------- 158
S+ + P +TH F TV +I+CF
Sbjct: 184 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243
Query: 159 --------------TVTW-DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC--VA 201
++W DSQ T D +++VW V K Q + V
Sbjct: 244 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303
Query: 202 VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKL 245
V T ++S S D L +++ ++GH +T + +
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,740,136
Number of Sequences: 62578
Number of extensions: 456701
Number of successful extensions: 2431
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1260
Number of HSP's gapped (non-prelim): 478
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)