RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17243
(392 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 97.1 bits (240), Expect = 3e-23
Identities = 51/273 (18%), Positives = 104/273 (38%), Gaps = 21/273 (7%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
D + VW + + + T++GH ++V ++ + S S D T K+W +
Sbjct: 35 ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVTHN 118
T H + +V+++ + +V++ + I +W + + G + + +
Sbjct: 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 154
Query: 119 MKYIVSGDGDNSLRIWPTSPQT-----------------HKDDERFTVSHSEEITCFTVT 161
I S D ++R+W + + + ++S +
Sbjct: 155 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214
Query: 162 WDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
+L++GSRD ++K+W V G LVGH + V V + ++S + D L V
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRV 273
Query: 222 WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
WD + L H VT + ++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306
Score = 95.6 bits (236), Expect = 8e-23
Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 23/221 (10%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
D + +W++ + T GH V V + + S S D T +VW + +
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI 122
+ H+ + ++ +S S+ G ++
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKS-------------------GKPGPFL 220
Query: 123 VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
+SG D ++++W S V H + +++++ + D +L+VW
Sbjct: 221 LSGSRDKTIKMWDVSTGMCL---MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
+ + L H V+ + T VV+GS D + VW+
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 317
Score = 94.4 bits (233), Expect = 2e-22
Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 25/256 (9%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
+ GH + V+ V P VS SED T KVW G T K H ++ ++
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 81 RRVVTSDKAGVIAVWVADNAQL---LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS 137
+ + + I +W + ++ +++ N +IVS D ++++W
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE-- 129
Query: 138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV 197
QT + FT H E + D + + S D +++VW V + L H V
Sbjct: 130 VQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 198 SCVAVAVTNKSLVV-------------------SGSKDSNLIVWDMETGGEEHFLAGHLG 238
C++ A + + SGS+D + +WD+ TG L GH
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 239 CVTCVKLAGDGTVAMS 254
V V G +S
Sbjct: 249 WVRGVLFHSGGKFILS 264
Score = 75.9 bits (185), Expect = 5e-16
Identities = 22/94 (23%), Positives = 40/94 (42%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G D + +W +++ T+ GH N V V F +S ++D T +VW +
Sbjct: 223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
T +H+ + ++ + VVT + VW
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 86.3 bits (212), Expect = 2e-19
Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 41/220 (18%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
D +W + + + +T GH V ++++P++ VSG+ D +AK+W + G T
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 64 FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIV 123
F H+S I A+ +
Sbjct: 222 FTGHESDINAICFFPNGN---------------------------------------AFA 242
Query: 124 SGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVG 183
+G D + R++ IT + + + L+ G D + VW +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIIC-GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
A VL GH + VSC+ V + V +GS DS L +W+
Sbjct: 302 ADRAGVLAGHDNRVSCLGVT-DDGMAVATGSWDSFLKIWN 340
Score = 80.2 bits (196), Expect = 3e-17
Identities = 42/280 (15%), Positives = 84/280 (30%), Gaps = 46/280 (16%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDS 80
T+ GHL + + +S VS S+D +W + V S ++ A
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQT 140
V + +++ + T + + + + T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 141 HKDDERFTVS---HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV 197
+ + T + H+ ++ ++ D++ ++G+ D S K+W V G Q GH +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 198 SCVAVAVTNKSLVVSG---------------------------------SKDSNLIV--- 221
+ + + SK L++
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289
Query: 222 -------WDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
WD LAGH V+C+ + DG +
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Score = 76.7 bits (187), Expect = 4e-16
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKV--WGLTLGS 59
G D +W + + T GH + ++ + PN +GS+D T ++
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK---CLTVT 116
+ + + I +V+ R ++ VW A A G CL VT
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 117 HNMKYIVSGDGDNSLRIW 134
+ + +G D+ L+IW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 78.7 bits (192), Expect = 8e-17
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 15/232 (6%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D + VW + + + + GH+ V CV + VSG+ D KVW +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRV--VSGAYDFMVKVWDPETETC 169
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLT-VTHNM 119
+ T + H + + ++ D VV+ I VW + +++ G + +
Sbjct: 170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVW 179
+VSG+ D++++IW + H + ++ ++IT S D ++K+W
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--SAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 180 QVVGGKLAQVLV-----GHTDHVSCVAVAVTNKSLVV---SGSKDSNLIVWD 223
+ G+ + LV G V + + T V +G++++ L+V D
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 77.9 bits (190), Expect = 1e-16
Identities = 62/297 (20%), Positives = 106/297 (35%), Gaps = 51/297 (17%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN------------------------ 37
G D + VW + + T+ GH V + N
Sbjct: 33 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT 92
Query: 38 --------------SIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV 83
VSGS D T +VW + G + H + + V D RRV
Sbjct: 93 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRV 150
Query: 84 VTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQTHK 142
V+ ++ VW + L++ G + + + ++VSG D S+R+W +
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW-----DVE 205
Query: 143 DDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAV 202
+ + L++G+ D ++K+W + G+ Q L G H S V
Sbjct: 206 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265
Query: 203 AVTNKSLVVSGSKDSNLIVWDMETGGEEHFL-----AGHLGCVTCVKLAGDGTVAMS 254
NK+ V++ S D + +WD++TG L G G V ++ + V
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV 322
Score = 76.0 bits (185), Expect = 5e-16
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 10/238 (4%)
Query: 11 WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
W+ + ++GH + V + VSGS+DNT KVW G + T H
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
+ + + D+ + S + + S + + K +VSG D +
Sbjct: 60 VWSSQM-RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL 190
LR+W + + V V +D + +++G+ D +KVW L
Sbjct: 119 LRVWD-----IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 173
Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGD 248
GHT+ V + + VVSGS D+++ VWD+ETG H L GH + ++L +
Sbjct: 174 QGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 78.3 bits (191), Expect = 1e-16
Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 38/285 (13%)
Query: 3 GMDCLVNVWQMNSHELQSTMEG------------------HLNTVSCVAISPNSIFAVSG 44
G + V++++ L + + + V SP+ F +G
Sbjct: 80 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139
Query: 45 SEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA---VWVADNAQ 101
+ED ++W + +V + H+ I ++ ++V+ + + +
Sbjct: 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199
Query: 102 LLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTS----PQTHKDDERFTVSHSEEITC 157
L G + + KYI +G D ++R+W + + + H + +
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259
Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQ------------VLVGHTDHVSCVAVAVT 205
T D Q +++GS D S+K+W + +GH D V VA
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-Q 318
Query: 206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
N ++SGSKD ++ WD ++G L GH V V +A +
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 363
Score = 75.6 bits (184), Expect = 1e-15
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 42/237 (17%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL----- 55
G D V +W + + + T+ + + + +GS D +VW
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 56 --TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
L S + H+ ++ +V D + VV+ + +W NA + P+
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD 173
+ H + + T + +Y+++GS+D
Sbjct: 300 CEVTYIG------------------------------HKDFVLSVATTQNDEYILSGSKD 329
Query: 174 MSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT-----NKSLVVSGSKDSNLIVWDME 225
+ W G +L GH + V VAVA ++ +GS D +W +
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 64.4 bits (155), Expect = 6e-12
Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 28/241 (11%)
Query: 17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF------------ 64
EL +++ H + V CV S + + +G + T +V+ ++ GS+V+
Sbjct: 54 ELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN 111
Query: 65 ------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHN 118
S I +V D + + T + +I +W +N +++ G + +
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171
Query: 119 MKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKV 178
+ R T D +Y+ GS D +++V
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 179 WQVVGGKLAQVL-------VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
W G L + L GH D V V + VVSGS D ++ +W+++ +
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKS 290
Query: 232 F 232
Sbjct: 291 D 291
Score = 41.7 bits (96), Expect = 1e-04
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDE-RFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQ 180
+ ++ ++ + D E ++ H+ + C + D +YL TG + + +V++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 181 VVGGKLAQVLVGHTDHV 197
V G L L +
Sbjct: 90 VSDGSLVARLSDDSAAN 106
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 69.1 bits (167), Expect = 9e-14
Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 10/229 (4%)
Query: 16 HELQ--STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA 73
H LQ V C+ I VSG DNT K+W H ++L
Sbjct: 3 HSLQRIHCRSETSKGVYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 74 VAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRI 133
+ + + S + V V L L + N +V+ D S+ +
Sbjct: 61 LQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119
Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
W + T R V H V +D +Y+++ S D ++KVW + + L GH
Sbjct: 120 WDMASPTDITLRRVLVGHR--AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177
Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
++C+ LVVSGS D+ + +WD+E G L GH V C
Sbjct: 178 KRGIACLQ---YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 223
Score = 62.9 bits (151), Expect = 9e-12
Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 61/273 (22%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGS---------------- 45
G D + +W N+ E + + GH +V C+ I S
Sbjct: 31 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT 90
Query: 46 ----------------------EDNTAKVW---GLTLGSVVSTFKSHQSTILAVAVLSDS 80
+D + VW T ++ H++ + V
Sbjct: 91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY 150
Query: 81 RRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-NMKYIVSGDGDNSLRIWPTSPQ 139
+ D+ I VW + + + G + + + +VSG DN++R+W
Sbjct: 151 IVSASGDR--TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG 208
Query: 140 THKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGG---------KLAQVL 190
V E + +D++ +++G+ D +KVW +V + L
Sbjct: 209 ACL-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 263
Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
V H+ V + ++ +VS S D +++WD
Sbjct: 264 VEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 59.5 bits (142), Expect = 2e-10
Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 27/256 (10%)
Query: 25 HLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS--VVSTFKSHQSTILAVAVLSDSRR 82
+ +SC A + + ++ ++ + V K H + V DS R
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 83 VVTSDKAGVIAVWVADNAQLLY-----SALGPSKCLTVTHNMKYIVSGDGDNSLRIW-PT 136
+VT VW ++C+ N K G G + I
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 137 SPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA--------- 187
+ + +S L GS D +++ ++
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 188 ---------QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLG 238
V V + V S DS + + D + LA
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETL 244
Query: 239 CVTCVKLAGDGTVAMS 254
+ V + ++ +
Sbjct: 245 PLLAVTFITESSLVAA 260
Score = 54.1 bits (128), Expect = 1e-08
Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 28/281 (9%)
Query: 2 GGMDCLVNVWQMNSHELQ--STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW--GLTL 57
+ V++++ + ++ ++ H V+ V +P+S V+ D A VW
Sbjct: 25 CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84
Query: 58 GSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSK------ 111
V + ++ + VI++ + + K
Sbjct: 85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144
Query: 112 -CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT---------------VSHSEEI 155
L N + +G D RI+ + ++ T S +
Sbjct: 145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204
Query: 156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSK 215
+ + + S D ++ + L T + V T SLV +G
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI-TESSLVAAGH- 262
Query: 216 DSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDL 256
D +++ ++ + G L G
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303
Score = 49.1 bits (115), Expect = 4e-07
Identities = 33/255 (12%), Positives = 75/255 (29%), Gaps = 31/255 (12%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
+ + + + + +TV + PNS+ +GS D +++ + V
Sbjct: 116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175
Query: 61 VS------------------TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA-- 100
S + V ++ RV + + AD
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235
Query: 101 -QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFT 159
L S P +T + +G D ++ K + ++ +
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294
Query: 160 VTWDSQYLITGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSCVAV---AVTNKSLVVSGSK 215
+T ++ +++ K A + H + VS ++V S +
Sbjct: 295 LTARERF-----QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349
Query: 216 DSNLIVWDMETGGEE 230
D + +WD+ +
Sbjct: 350 DGGMSIWDVRSLESA 364
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 59.2 bits (141), Expect = 2e-10
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 117 HNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSL 176
+ +++++ D + + + DSQ T D ++
Sbjct: 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI 275
Query: 177 KVWQVVGGKLAQVLVGHTDHVSCVAVAV--TNKSLVVSGSKDSNLIVWDM 224
+VW V K Q + V V T ++S S D L +++
Sbjct: 276 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 49.1 bits (115), Expect = 4e-07
Identities = 28/259 (10%), Positives = 65/259 (25%), Gaps = 19/259 (7%)
Query: 7 LVNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSVVSTF 64
++ + + V+ V SP S + SG E VWG T ++
Sbjct: 44 CLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV 103
Query: 65 --------KSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADN------AQLLYSALGPS 110
+ I ++ + RR+ + ++ + +
Sbjct: 104 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 163
Query: 111 KCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITG 170
C ++ D S+ + P +R + + DS +
Sbjct: 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT 223
Query: 171 SRDMSLKVW---QVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
+ A++ + + D+ + VWD+ T
Sbjct: 224 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283
Query: 228 GEEHFLAGHLGCVTCVKLA 246
+ ++
Sbjct: 284 KCVQKWTLDKQQLGNQQVG 302
Score = 40.7 bits (93), Expect = 2e-04
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 108 GPSKCLTVTHNMKYIVSGDGDNS-LRIWPTSPQTHKDDERFTVSHSEEITC--FTVTWDS 164
+ L+ I G ++ +R +FT S +T F+ S
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLV--------GHTDHVSCVA 201
QYL +G + VW K + + +S ++
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Score = 39.5 bits (90), Expect = 5e-04
Identities = 10/95 (10%), Positives = 28/95 (29%), Gaps = 3/95 (3%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
+ + + + +S + D T +VW +T V
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288
Query: 64 FKSHQSTILAVAV---LSDSRRVVTSDKAGVIAVW 95
+ + + V + + R+++ G + +
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 39.1 bits (89), Expect = 6e-04
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAIS---PNSIFAVSGSEDNTAKVWGL 55
G D + VW + + + + + + +S S D T + L
Sbjct: 269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 35.3 bits (79), Expect = 0.009
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS-RDMSLKVWQVVGGKLAQV- 189
I P P T ++ T + + + + ++ K+ V
Sbjct: 7 EIIPPQPSTQRN----------FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVV 56
Query: 190 -LVGH-TDHVSCVAVA-VTNKSLVVSGSKDSNLIVWDMETGGEEHFL--------AGHLG 238
GH + V+ V + + + SG + +IVW E + + G
Sbjct: 57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 116
Query: 239 CVTCVKLAGDG 249
++ + +G
Sbjct: 117 PISDISWDFEG 127
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 58.8 bits (140), Expect = 3e-10
Identities = 20/92 (21%), Positives = 37/92 (40%)
Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
T +DD V+HS + T + D + + S D ++K+W V K+ + +
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279
Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
T + K +VS S + + + E
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 51.8 bits (122), Expect = 5e-08
Identities = 30/264 (11%), Positives = 68/264 (25%), Gaps = 12/264 (4%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLG--SV 60
V + S H + + SP+ + SG ++W T +
Sbjct: 35 CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMK 120
+T + ++ S+S+R+ + V + + +
Sbjct: 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154
Query: 121 YIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW---DSQYLITGSRDMSLK 177
S T +F + E D + D ++
Sbjct: 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 214
Query: 178 VWQVVGGKLAQVLVGHTDHV------SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
++ V G V + + + + S S D + +W++ T E
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274
Query: 232 FLAGHLGC-VTCVKLAGDGTVAMS 254
+ + + +S
Sbjct: 275 TIPVGTRIEDQQLGIIWTKQALVS 298
Score = 47.6 bits (111), Expect = 1e-06
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 108 GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL 167
G LT + + I S D +++IW + T K ++ V E + W Q L
Sbjct: 239 GSVFGLTWSPDGTKIASASADKTIKIW--NVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 168 ITGSRDMSLKVW 179
++ S + +
Sbjct: 297 VSISANGFINFV 308
Score = 44.5 bits (103), Expect = 1e-05
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
+ + + H +V + SP+ S S D T K+W + V T
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275
Query: 64 FKSHQS-TILAVAVLSDSRRVVTSDKAGVIAVWVAD 98
+ ++ + +V+ G I +
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 41.4 bits (95), Expect = 1e-04
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLN-TVSCVAISPNSIFAVSGSEDNTAKVW 53
D + +W + + +++ T+ + I VS S +
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 40.7 bits (93), Expect = 2e-04
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 14/112 (12%)
Query: 133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG 192
++P+ P+T + T + + S+ V ++
Sbjct: 8 LFPSLPRTAR----------GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTE 56
Query: 193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG--GEEHFLAGHLGCVTC 242
H+ + + + SG N+ +WD + + G V
Sbjct: 57 HSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107
Score = 37.6 bits (85), Expect = 0.002
Identities = 6/69 (8%), Positives = 16/69 (23%), Gaps = 1/69 (1%)
Query: 27 NTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS 86
T + +P + + + + + H +
Sbjct: 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76
Query: 87 DKAGVIAVW 95
D G + +W
Sbjct: 77 DVHGNVRIW 85
Score = 36.8 bits (83), Expect = 0.003
Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 2/59 (3%)
Query: 196 HVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
+ + +++ + + + H T K + G S
Sbjct: 19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 56.7 bits (135), Expect = 1e-09
Identities = 46/297 (15%), Positives = 77/297 (25%), Gaps = 51/297 (17%)
Query: 5 DCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST- 63
D L+ +T+ H V V IS + +G KVW ++ S
Sbjct: 31 DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88
Query: 64 ----FKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTH-- 117
+ + I + +L D ++ +A +++W A S
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 118 NMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD---- 173
S ++ R H++ +C ++ D L TG D
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 174 ------------------------------------MSLKVWQVVGGKLAQVLVGHTDHV 197
S V L H V
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
+ A K VS KD+ L W G F + V ++ D ++
Sbjct: 269 LSLKFAYCGK-WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDDKYIVT 323
Score = 56.4 bits (134), Expect = 2e-09
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
L + K+ VS DN L W +T F S + ++ D +Y++TGS
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAW----RTPYGASIFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 172 RDMSLKVWQVV 182
D V++V+
Sbjct: 326 GDKKATVYEVI 336
Score = 56.4 bits (134), Expect = 2e-09
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
+K D+ H + + ++ ++ +D L W+ G
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KE 305
Query: 194 TDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
+ V ++V +K +V+GS D V++
Sbjct: 306 SSSVLSCDISVDDK-YIVTGSGDKKATVYE 334
Score = 54.4 bits (129), Expect = 7e-09
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 11 WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
+ + + H + V + + + VS +DN W G+ + K S+
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS 308
Query: 71 ILAVAVLSDSRRVVTSDKAGVIAVW 95
+L+ + D + +VT V+
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVY 333
Score = 48.7 bits (114), Expect = 6e-07
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVW 53
G D L+N W+ ++V IS + + V+GS D A V+
Sbjct: 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Score = 43.3 bits (100), Expect = 3e-05
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 158 FTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDS 217
F VT D Q +L + + H + V V ++ V +G
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTIS-NPTRHVYTGG-KG 72
Query: 218 NLIVWDMETGGEEHFLA-----GHLGCVTCVKLAGDGTV 251
+ VWD+ G + ++ + KL DG
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Score = 32.5 bits (72), Expect = 0.081
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 11/144 (7%)
Query: 32 VAISPNS-IFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG 90
++ + + V D ++T +H + AV + + +R V T K G
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGK-G 72
Query: 91 VIAVWVADNAQLLYSAL--------GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK 142
+ VW + + + + ++ G ++L IW + T +
Sbjct: 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 143 DDERFTVSHSEEITCFTVTWDSQY 166
T S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVC 156
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 56.5 bits (134), Expect = 1e-09
Identities = 36/282 (12%), Positives = 75/282 (26%), Gaps = 46/282 (16%)
Query: 17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTF-KSHQSTILAVA 75
+ GH ++ ++ S + S + W ++ G F H + I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 76 VLSDSRRVVTSDKAGVIAVWVADNA-----QLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
S S + V + + L V+ + V+ +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 131 LRIWPTSPQTHKDDERFTV-----------------------------------SHSEEI 155
+ H EI
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK--SLVVSG 213
T + + +L+ + + + V T H + VA + + +G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 214 SKDSNLIVWDMETGGEEHFL---AGHLGCVTCVKLAGDGTVA 252
S D+++IVW+M + + A + V V + T+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284
Score = 54.2 bits (128), Expect = 8e-09
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCVTC 242
G + QV GH ++ ++ + + + S + ++ WD+ TG F H +T
Sbjct: 2 GSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 243 VK 244
+K
Sbjct: 61 IK 62
Score = 48.8 bits (114), Expect = 5e-07
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 108 GPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYL 167
+ ++N ++V+ D + + + H+ ++ C + + D+ L
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239
Query: 168 ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV-AVAVTNKSLVVSGSKDSNLIVWD 223
TGS D S+ VW + +++ +S V +V N++ +VS +DSN+ W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 39.6 bits (90), Expect = 4e-04
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCV--AISPNSIFAVSGSEDNTAKVWGLT 56
G +D V VW MN + + +S V I N VS +D+ K W +
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
Score = 39.2 bits (89), Expect = 5e-04
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Query: 57 LGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCL--- 113
LGS+ H I A++ +D + + ++D G I W +
Sbjct: 1 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 114 TVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRD 173
T + + + D+ L++ P + S + V+ D +
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 174 MSLKVWQ 180
Sbjct: 121 HIAIYSH 127
Score = 39.2 bits (89), Expect = 5e-04
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS- 59
+V ++ H V+CV+ SP+++ +GS DN+ VW + S
Sbjct: 199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258
Query: 60 -VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVW 95
+ +H + + + + +V++ + I W
Sbjct: 259 HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 56.1 bits (133), Expect = 2e-09
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 9/186 (4%)
Query: 19 QSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
++T+ GH+ +V + + ++G++D +V+ + H + A+
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 79 DSRRVVTSDKAGVIAVWVADNAQLLYSAL----GPSKCLTVTHNMKYIVSGDGDNSLRIW 134
V S V + + N+KYIV+G DN+L +W
Sbjct: 64 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
Query: 135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT 194
+ K+ + T + G + + V G V+ G
Sbjct: 124 ----KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 195 DHVSCV 200
D+ V
Sbjct: 180 DNTLIV 185
Score = 55.3 bits (131), Expect = 4e-09
Identities = 39/315 (12%), Positives = 79/315 (25%), Gaps = 62/315 (19%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-------------------- 41
G D ++ V+ + + + GH V + + I
Sbjct: 29 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH 88
Query: 42 -----------------------VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLS 78
V+GS DNT VW L S V L
Sbjct: 89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 148
Query: 79 DSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTV------THNMKYIVSGDGDNSLR 132
++ V + + +V + + L V D S
Sbjct: 149 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208
Query: 133 IWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVG 192
+ T+ + + + + V +
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268
Query: 193 -----------HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH-FLAGHLGCV 240
H ++S + + +++VSGS ++ ++++ +G H + +
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI 327
Query: 241 TCVKLAGDGTVAMSD 255
V G VA +
Sbjct: 328 WSVNFKGKTLVAAVE 342
Score = 52.6 bits (124), Expect = 3e-08
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 145 ERFTVS-HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVA 203
+R T+ H + + ++ Y+ITG+ D ++V+ + K L GH V +
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA--LK 60
Query: 204 VTNKSLVVSGSKDSNLIVWDMET 226
+ ++VSGS D + VWD++
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKK 83
Score = 47.6 bits (111), Expect = 1e-06
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
+ + + H N + + VSGS +N ++ L G +
Sbjct: 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 315
Query: 61 V-STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVAD 98
V + I +V V +K G + + D
Sbjct: 316 VHANILKDADQIWSVN-FKGKTLVAAVEKDGQSFLEILD 353
Score = 46.8 bits (109), Expect = 2e-06
Identities = 37/223 (16%), Positives = 73/223 (32%), Gaps = 7/223 (3%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
G V+ + S +S + VSGS DNT VW + +
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL 194
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
H I + + +R +++ I +W +N +L+Y + T +
Sbjct: 195 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY----TLQGHTALVGLLR 250
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
+ ++ D R H ++ T + S ++ + ++ +
Sbjct: 251 LSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNL 310
Query: 182 VGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
GKL ++ D + V K+LV + KD +
Sbjct: 311 RSGKLVHANILKDADQIWS--VNFKGKTLVAAVEKDGQSFLEI 351
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 54.8 bits (130), Expect = 6e-09
Identities = 30/283 (10%), Positives = 57/283 (20%), Gaps = 36/283 (12%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI---------FAVSGSEDNTAKV 52
G V V+ + + +E V P S V
Sbjct: 74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGV 133
Query: 53 WGLTLGSVVSTFKSHQSTIL-------AVAVLSDSRR-VVTSDKAGVIAVWVADNAQLLY 104
L + + D V G + +
Sbjct: 134 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 193
Query: 105 SAL--------GPSKCLTVTHNMKYIVSGDGDNSLRIWPT---------SPQTHKDDERF 147
L + + T+ K + P + +
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253
Query: 148 TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNK 207
H + + + + V G+ + + V+ K
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312
Query: 208 S-LVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDG 249
L + D L + D E+G E + + A G
Sbjct: 313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
Score = 40.5 bits (93), Expect = 2e-04
Identities = 23/292 (7%), Positives = 59/292 (20%), Gaps = 46/292 (15%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPN----------SIFAVSGSEDNTAK 51
V + + ++G + ++ + G + +
Sbjct: 24 FAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE 81
Query: 52 VWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIA---------VWVADNAQL 102
V+ + + + V + K + V +
Sbjct: 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141
Query: 103 LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHK---DDERFTVSHSEEITCFT 159
P D SL + E F I
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 201
Query: 160 VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV--GHTDHVSCVA---------------- 201
+ + L+ + + + G + T+
Sbjct: 202 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 261
Query: 202 ---VAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
+ V + + ++V D +TG + + ++ D
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEK 312
Score = 32.5 bits (72), Expect = 0.093
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 169 TGSRDMSLKVWQVVGGK-LAQVLVGHTDHVSC------VAVAVTNKSLVVSGSKDSNLIV 221
+ V G+ + + G + +A A T S + G + + V
Sbjct: 23 HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82
Query: 222 WDMETGGEEHFLAGHLGCVTCV 243
+D T + V
Sbjct: 83 FDPVTLLPTADIELPDAPRFLV 104
Score = 28.2 bits (61), Expect = 1.8
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 156 TCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV----- 210
+ + G R ++V+ V + V SL
Sbjct: 60 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119
Query: 211 ---VSGSKDSNLIVWDMETGGEEHFLAGH-------LGCVTCVKLAGDGTVAMSDLPPSR 260
S + V D+E + L T DG++A
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179
Query: 261 PAGPKRPLRRLLKKEVSLDTYTWQRKYGHL 290
+ E ++ + +K G L
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRL 209
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 54.5 bits (129), Expect = 8e-09
Identities = 15/227 (6%), Positives = 47/227 (20%), Gaps = 33/227 (14%)
Query: 11 WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQST 70
+ A +S S + + + S
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-- 220
Query: 71 ILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNS 130
V+ + + + + + + GD
Sbjct: 221 -----------FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--- 266
Query: 131 LRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVL 190
+ + + Y L + V K+
Sbjct: 267 -----RMIIPLES-------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--- 311
Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHL 237
++++ + ++ ++ V+ D + + +E +E +
Sbjct: 312 -EVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEKPEDERTVETDK 356
Score = 38.7 bits (88), Expect = 0.001
Identities = 5/62 (8%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
++ + + + ++ N ++ + +S + + +D + L
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349
Query: 62 ST 63
T
Sbjct: 350 RT 351
Score = 36.4 bits (82), Expect = 0.005
Identities = 21/241 (8%), Positives = 54/241 (22%), Gaps = 22/241 (9%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTS--DKA 89
SP ++ A + ++ V+ I V D++ +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREG 65
Query: 90 GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFT- 148
+ ++ + + + + ++ I +T K
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 149 --------VSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
G ++ V+ + G K+ ++ +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDMETGG-------EEHFLAGHLGCVTCVKLAGDGTVAM 253
A + + S S D + + G KL +
Sbjct: 186 FDADSK--NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243
Query: 254 S 254
+
Sbjct: 244 A 244
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 53.8 bits (127), Expect = 8e-09
Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 52/279 (18%)
Query: 17 ELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAV 76
E+ T+ GH ++ + ++P +SGS D W S S + H + I+++
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDN 54
Query: 77 LSDSRRVVTSDKAGVIAVW----------------------VADNAQLLYSALGPSKCLT 114
S + V N L + +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 115 VTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDM 174
+ + S + + + + T I+ S
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 175 SLKVWQVVGGKLAQVLVGHTDHVSC--------------------VAVAVTNKSLVVSGS 214
+ V GK+ + + + + LV +GS
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234
Query: 215 KDSNLIVWDMETGGEE-HFLAGHLGCVTCVKLAGDGTVA 252
D+N+ ++ ++ + L H V + T+
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV 273
Score = 50.3 bits (118), Expect = 1e-07
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV-GGKLAQVLVG 192
+ E + + TGS D ++ ++ V K+ + L
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 256
Query: 193 HTDHVSCVAVAVTNKSLVVSGSKDSNLIVWD 223
H D V+ + S +VS D+ + W+
Sbjct: 257 HKDGVNNLLW--ETPSTLVSSGADACIKRWN 285
Score = 48.8 bits (114), Expect = 4e-07
Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 184 GKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCV 243
++ + + GH ++ + V + ++SGS D ++ W + + H + +
Sbjct: 3 DEVLKTISGHNKGITALTV-----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52
Query: 244 KLAGDGTVAM 253
+ +
Sbjct: 53 DNSKAQEYSS 62
Score = 42.3 bits (97), Expect = 5e-05
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 11 WQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGL-TLGSVVSTFKSHQS 69
+ + +GS D ++ + ++ +H+
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 70 TILAVAVLSDSRRVVTSDKAGVIAVW 95
+ + + S +V+S I W
Sbjct: 260 GVNNLLWETPS-TLVSSGADACIKRW 284
Score = 41.5 bits (95), Expect = 1e-04
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW-DSQYLITG 170
+ +G D ++ I+ S + + +H + + + W L++
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIY--SVKRPMKIIKALNAHKDGVNN--LLWETPSTLVSS 275
Query: 171 SRDMSLKVWQVV 182
D +K W VV
Sbjct: 276 GADACIKRWNVV 287
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 53.7 bits (127), Expect = 2e-08
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 14/116 (12%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVW------------QVVGGKLAQVLVGHTDHVS 198
H +I V+ + + ++ S D LKVW + + + + H D +
Sbjct: 13 HDADIFS--VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 199 CVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMS 254
+ LV + S +L+ + + E + + + A+
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Score = 52.5 bits (124), Expect = 3e-08
Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 26/236 (11%)
Query: 20 STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS------HQSTILA 73
+ + H + V+ + VS S D KVW L + H+S +
Sbjct: 8 NAGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 74 VAVL-------SDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGD 126
V VL + V T+ +G + + + + + S
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITR--------EDETKKVIFEKLDLLDSDM 117
Query: 127 GDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKL 186
+S + V+ + T + + + S ++ + G +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177
Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
+ + + + V ++ + L+ +G + + + ++ T + +
Sbjct: 178 -ESPMTPSQFATS--VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230
Score = 51.0 bits (120), Expect = 1e-07
Identities = 30/304 (9%), Positives = 71/304 (23%), Gaps = 56/304 (18%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAV---------------SGSE 46
+ +++ + + + + +S +A+ +
Sbjct: 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144
Query: 47 DNTAKVWGL------------------TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDK 88
T +W L V + + +V + +
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 204
Query: 89 AGVIAVWVADNAQLLYSALGPS--------KCLTVTHNMKYIVSGDGDNSLRIW------ 134
V ++ L S + + + + NS
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264
Query: 135 -------PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLA 187
+ P +HS + + + L + D L+ W V +
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324
Query: 188 QVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAG 247
L H D + + S ++ V ++ G A + CV
Sbjct: 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV--CL 382
Query: 248 DGTV 251
D ++
Sbjct: 383 DRSI 386
Score = 37.1 bits (84), Expect = 0.003
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 187 AQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEH 231
A H + V+ S VS S D L VWD + E+
Sbjct: 7 ANAGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNEN 48
Score = 36.4 bits (82), Expect = 0.004
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D + W + + E +T+ H + + G V+ +
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL--AVDEHGDSLAEPGVFDVKFLKK 363
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAG 90
++ + R + +AG
Sbjct: 364 GWRSGMGADLNESLCCVCLDRSIRWFREAG 393
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 52.2 bits (123), Expect = 5e-08
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 151 HSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLV---GHTDHVSCVAVAVTNK 207
+ I+ + L+ S D SL V++ L+ + + C
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69
Query: 208 SLVVSGSKDSNLIVWDMET 226
+ G+ ++ D+
Sbjct: 70 LQIYVGTVQGEILKVDLIG 88
Score = 51.4 bits (121), Expect = 7e-08
Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 14/224 (6%)
Query: 21 TMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK---SHQSTILAVAVL 77
+ + +S + I P+ + S D + V+ + + ++ +L +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 78 SDSRRVV---TSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIW 134
++ + T + + + + + + I
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 135 PTSPQTHKDDERF-----TVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV 189
P+ + D + + + FT+ +S LI G + ++ +++ +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 190 ---LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
G + VA+ + S D + V + G++
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229
Score = 45.6 bits (106), Expect = 5e-06
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 185 KLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFL---AGHLGCVT 241
++ Q+ D++S + + +KSL++ S D +L V+ + + L + +
Sbjct: 2 QIVQIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 242 CVKLAGDG 249
C +
Sbjct: 61 CCNFIDNT 68
Score = 45.6 bits (106), Expect = 6e-06
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
G D +++ W + + + N S V I+ + + D+T K ++
Sbjct: 268 TAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN----AAI 322
Query: 61 VSTFKSHQSTILAV 74
T + + S+I +
Sbjct: 323 DQTIELNASSIYII 336
Score = 41.0 bits (94), Expect = 2e-04
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 1/96 (1%)
Query: 7 LVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKS 66
+ H L V+ + SP F + D W L + F
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 67 HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQL 102
+ V + + + A + +
Sbjct: 292 F-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326
Score = 38.7 bits (88), Expect = 8e-04
Identities = 8/86 (9%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
+ + K++ + D + W + + E + + L +
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCW----NLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
Query: 172 RDMSLKVWQVVGGKLAQVLVGHTDHV 197
D + K + Q + + +
Sbjct: 312 SDDTFKTN----AAIDQTIELNASSI 333
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 50.0 bits (118), Expect = 2e-07
Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 26/241 (10%)
Query: 10 VWQMNSHELQSTMEGHLNTVSCVAISPN----------SIFAVSGSEDNTAKVWGLTLGS 59
V+ ++ +L ++G AI+P+ G+ + ++ T
Sbjct: 2 VYDADAKKLLGQIDGG--FGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLD 59
Query: 60 VVSTFKSHQSTILAVAVLS------DSRRVVTSDKAGVIAVWVADNAQLL-YSALGPSKC 112
V D +R+ ++ +V V D S + + C
Sbjct: 60 HAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAAC 119
Query: 113 LTVTHNMKYI-VSGDGDN-SLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWD--SQYLI 168
+ + +L + + + V +
Sbjct: 120 VLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYL 179
Query: 169 TGSRDMSLKVWQVVGGKLAQV--LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMET 226
+ +++ G K A TD + N M
Sbjct: 180 FTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQQ-TAVQAKQNRYYVLMHK 238
Query: 227 G 227
G
Sbjct: 239 G 239
Score = 49.2 bits (116), Expect = 4e-07
Identities = 29/280 (10%), Positives = 59/280 (21%), Gaps = 54/280 (19%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS------IFAVSGSEDNTAKVWGL 55
G +V + + + + V N+ + A V +
Sbjct: 44 GTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVI 103
Query: 56 TLGSVVSTFKSHQSTILAVAVLSDSRR--VVTSDKAGVIAVWVADNAQLLYSALGPSKCL 113
S S T V + + V + N + + +
Sbjct: 104 DAVSKKML--SEIDTAACVLAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFID 161
Query: 114 TVTHNM--------KYIVSGDGDNSLRIWPTSPQT---------HKDDERFTVSHSEEIT 156
+ ++R S D ER +
Sbjct: 162 VDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGWRPGGMQ 221
Query: 157 CFTVTWDSQYL--------------------ITGSRDMSLKVWQVVGGKLAQVLVGHTDH 196
V + + + + + L
Sbjct: 222 QTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKVEPL------ 275
Query: 197 VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
+ V+ +K L + S+L+V D TG +H
Sbjct: 276 -VSIQVSEDDKPLFYGLTATSDLVVMDARTGALQHVEKQI 314
Score = 30.0 bits (66), Expect = 0.46
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 7/72 (9%)
Query: 178 VWQVVGGK-LAQVLVGHTDHV------SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEE 230
V+ K L Q+ G VA T S G++ + + D T
Sbjct: 2 VYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHA 61
Query: 231 HFLAGHLGCVTC 242
+
Sbjct: 62 GEIVIPAKHAQH 73
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 49.4 bits (117), Expect = 4e-07
Identities = 27/222 (12%), Positives = 56/222 (25%), Gaps = 33/222 (14%)
Query: 24 GHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV 83
T ++F+V+ + + + + + + + + + + R +
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYL 76
Query: 84 VTSDKAGVIAVWVADNAQL--------LYSALGPSKCLTVTHNMKY-IVSGDGDNSLRIW 134
+ G + + + A KY I I
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136
Query: 135 PTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHT 194
D E + +T+D Q R + +L H
Sbjct: 137 --------DGETLEPKK--IQSTRGMTYDEQEYHPEPRVAA-------------ILASHY 173
Query: 195 DHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGH 236
V V T K L+V + +NL ++ H
Sbjct: 174 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215
Score = 36.3 bits (83), Expect = 0.005
Identities = 33/272 (12%), Positives = 68/272 (25%), Gaps = 41/272 (15%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNS------------IFAVSGSEDNT 49
+ + E + T P F V+ E
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186
Query: 50 AKVWGL-TLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAG-VIAVWVADNAQLLYSAL 107
+ L ++ +T S + + + R +T+ A + V +L+
Sbjct: 187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246
Query: 108 GPSKCLTVTHNM---------KYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF 158
+ + S GD+S+ + T P+ H D+ + +
Sbjct: 247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--- 303
Query: 159 TVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSN 218
L + S ++ L + +VAV + + D
Sbjct: 304 ----GGGSLFIKTHPNSQYLYVD------ATLNPEAEISG--SVAVFDIKAMTGDGSDPE 351
Query: 219 LIVWDMETGGEEHFLAGHLGCVTCVKLAGDGT 250
+ + V + DGT
Sbjct: 352 FKTLPIAEWAG---ITEGQPRVVQGEFNKDGT 380
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 47.4 bits (111), Expect = 1e-06
Identities = 27/267 (10%), Positives = 52/267 (19%), Gaps = 6/267 (2%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK-SHQSTILAVAVLSDSRRV-VTSDKA 89
A+ + + + N V + +V + + + D+R V ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 90 GVIAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTV 149
G I D + + A S V +M + Q D
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQV----LVGHTDHVSCVAVAVT 205
E + + G L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 206 NKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPK 265
S L W ++ E + + K + K
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 266 RPLRRLLKKEVSLDTYTWQRKYGHLTS 292
+ T K +
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIY 268
Score = 43.6 bits (101), Expect = 3e-05
Identities = 20/226 (8%), Positives = 43/226 (19%), Gaps = 20/226 (8%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVV 61
+ V+ + V + + + G
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176
Query: 62 STFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKY 121
+ D + +
Sbjct: 177 VALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSM-------------LYTIARFKDDKQD 222
Query: 122 IVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQV 181
+ D +T K + +E + I G + K
Sbjct: 223 PATADLLYGYLSVDL--KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280
Query: 182 VGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
+ + HT CVA + G ++L V++ +T
Sbjct: 281 QRKLIKAANLDHT--YYCVAFD-KKGDKLYLGGTFNDLAVFNPDTL 323
Score = 38.2 bits (87), Expect = 0.001
Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 3/103 (2%)
Query: 2 GGMDCLVNVWQMNSHELQ-STMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSV 60
+ + + + SP + G N + L +
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKL 284
Query: 61 VSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL 103
+ T VA ++ +AV+ D + +
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Score = 37.0 bits (84), Expect = 0.003
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK 65
+ + + +L +T CVA G N V+ V K
Sbjct: 274 LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 47.3 bits (111), Expect = 2e-06
Identities = 19/257 (7%), Positives = 50/257 (19%), Gaps = 32/257 (12%)
Query: 2 GGMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSI--------FAVSGSEDNTAKVW 53
G V V+ + + +E V + I + A
Sbjct: 92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151
Query: 54 GLTLGSVVSTFK-------SHQSTILAVAVLSDSRRVVTSDKAGVIAVWVA--------D 98
+ S K + + + A A + +
Sbjct: 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211
Query: 99 NAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCF 158
+ A P + + + S ++
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271
Query: 159 T-------VTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLV- 210
+ + + G+ + + + + A S
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330
Query: 211 VSGSKDSNLIVWDMETG 227
+ + L ++D +
Sbjct: 331 ANSAGTEVLDIYDAASD 347
Score = 43.0 bits (100), Expect = 4e-05
Identities = 27/261 (10%), Positives = 57/261 (21%), Gaps = 51/261 (19%)
Query: 50 AKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV---VTSDKAGVIAVWVADNAQLLYSA 106
+KV G + + S + SRR + + AG WV+ +
Sbjct: 3 SKVAGSAAAASAAAASDGSS--CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG 60
Query: 107 LGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQY 166
L++ G +
Sbjct: 61 HSLGAFLSLAV-----AGHSGS---------------------------DFALASTSFAR 88
Query: 167 LITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSC-------VAVAVTNKSLVVSGSKDSNL 219
G R ++V+ V + + ++ L+ S
Sbjct: 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148
Query: 220 IVWDMETGGEEH-------FLAGHLGCVTCVKLAGDGTVAMSDLPPSRPAGPKRPLRRLL 272
+ ++ F T + ++A SDL + A +
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208
Query: 273 KKEVSLDTYTWQRKYGHLTSS 293
+ S + +
Sbjct: 209 AQNCSSQAAQANYPGMLVWAV 229
Score = 42.3 bits (98), Expect = 7e-05
Identities = 16/207 (7%), Positives = 46/207 (22%), Gaps = 12/207 (5%)
Query: 41 AVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILA-------VAVLSDSRRV-VTSDKAGVI 92
+ G + +V+ ++ + + + + + S + +
Sbjct: 89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148
Query: 93 AVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIW---PTSPQTHKDDERFTV 149
A A S G SL + T
Sbjct: 149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208
Query: 150 SHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSL 209
+ + + + + + G + + G+ +
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF-RSAGFQ 267
Query: 210 VVSGSKDSNLIVWDMETGGEEHFLAGH 236
+V+ K+++ I+ A
Sbjct: 268 MVAKLKNTDGIMILTVEHSRSCLAAAE 294
Score = 33.0 bits (74), Expect = 0.050
Identities = 3/75 (4%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISP--NSIFAVSGSEDNTAKVWGLTLGSVVSTFK 65
+ + + + + + + S + + ++ S+ +
Sbjct: 296 TSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354
Query: 66 SHQSTILAVAVLSDS 80
+ +++V +++
Sbjct: 355 LDKGPE-SLSVQNEA 368
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 45.6 bits (106), Expect = 5e-06
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 165 QYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVT--NKSLVVSGSKDSNLIVW 222
Y++ +R L V + +V+ + + V + + +K +L+
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 223 DMETGGEEHFLAGHLGC 239
D+ TG +
Sbjct: 62 DLVTGETLGRIDLSTPE 78
Score = 43.3 bits (100), Expect = 3e-05
Identities = 22/237 (9%), Positives = 53/237 (22%), Gaps = 20/237 (8%)
Query: 40 FAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLSDSRRV-VTSDKAGVIAVWV 96
+ ++ + + V +V T + V R T +K+ +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 97 ADNAQLLYSALGPSKC--------LTVTHNMKYIVSGDGDNSLRIWPTSPQ--------T 140
+ L + ++ + K + + L + Q
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 141 HKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCV 200
R +IT D L RD+ + + G + + + +
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE-AGTLVEDKPIQSWEAETYA 181
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTCVKLAGDGTVAMSDLP 257
V S + + + + + L
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238
Score = 42.9 bits (99), Expect = 4e-05
Identities = 7/84 (8%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVST 63
++ + + + + ++ V +S + G +
Sbjct: 258 AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316
Query: 64 FKSHQSTILAVAVLSDSRRVVTSD 87
+ +++A + R+ T D
Sbjct: 317 VDLPGNASMSLASV----RLFTRD 336
Score = 39.0 bits (89), Expect = 7e-04
Identities = 26/254 (10%), Positives = 62/254 (24%), Gaps = 34/254 (13%)
Query: 3 GMDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGSVVS 62
+ + ++ +A + + D V G++V
Sbjct: 111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVE 168
Query: 63 TFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLLYSALGPSKCLTVTHNMKYI 122
A + +GV+A T ++
Sbjct: 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATP----------------FYTARKDIDPA 212
Query: 123 VSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVV 182
L + ++ F+ + L+ + +
Sbjct: 213 DPTAYRTGLLTM----DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLE 268
Query: 183 GGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAGHLGCVTC 242
+ + V V+ T+ S V G +L +D ET +
Sbjct: 269 KNASIKRV-PLPHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETLEK----------KGQ 316
Query: 243 VKLAGDGTVAMSDL 256
V L G+ +++++ +
Sbjct: 317 VDLPGNASMSLASV 330
Score = 34.8 bits (78), Expect = 0.014
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 4/104 (3%)
Query: 1 MGGMDCLVNVWQMNSHELQST-MEGHLNTVSCVAISPNSIFAVSGSEDNTAKVWGLTLGS 59
+ + + E+ + A++P A N + + L +
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNA 271
Query: 60 VVSTFKSHQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNAQLL 103
+ + +V V +D V G +A + A+ +
Sbjct: 272 SIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
Score = 34.8 bits (78), Expect = 0.016
Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 9/148 (6%)
Query: 120 KYIVSGDGDNSLRIWPTSPQTHKDDERFTV-SHSEEITCFTVTWDSQYL-ITGSRDMSLK 177
YI++ + L + + D+ T+ V + T ++ SL
Sbjct: 2 DYILAPARPDKLVVI--DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 178 VWQVVGGKLAQVLVGHTDH-----VSCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHF 232
+V G+ + T + A++ K+L + S +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119
Query: 233 LAGHLGCVTCVKLAGDGTVAMSDLPPSR 260
A ++
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGS 147
Score = 28.6 bits (62), Expect = 1.4
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 207 KSLVVSGSKDSNLIVWDMETGGEEH--FLAGHLGCVTCVKLAGDGTVA 252
+ +++ ++ L+V D E + +A +A G +A
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA 48
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 44.9 bits (105), Expect = 1e-05
Identities = 20/203 (9%), Positives = 52/203 (25%), Gaps = 21/203 (10%)
Query: 32 VAISPNSIFAVSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRVVTSDKAGV 91
+ ++F+V+ + + +V + + + + + R ++ +
Sbjct: 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84
Query: 92 IAVWVADNAQLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSH 151
I + + R +S +D
Sbjct: 85 IDMIDLW-----------------AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
Query: 152 SEE---ITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKS 208
T + + +++ ++A ++ H V V T K
Sbjct: 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 187
Query: 209 LVVSGSKDSNLIVWDMETGGEEH 231
L+V+ NL V +
Sbjct: 188 LLVNYKDIDNLTVTSIGAAPFLA 210
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 41.8 bits (96), Expect = 8e-05
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 164 SQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
S + I S ++ V V K+ + + ++ + V+ + +++ +
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSII 59
Query: 223 DMETGGEEHFLAGHLGCVTC 242
D T +
Sbjct: 60 DTATNNVIATVPAGSSPQGV 79
Score = 39.1 bits (89), Expect = 7e-04
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 4 MDCLVNVWQMNSHELQSTMEGHLNTVSCVAISPNSIFA-VSGSEDNTAKVWGLTLGSVVS 62
V++ ++++ + + + +A++P+ V+ S NT V ++ +
Sbjct: 222 YFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
Query: 63 TFK 65
T
Sbjct: 281 TMA 283
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 1/116 (0%)
Query: 112 CLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGS 171
+ VT + + + D+ + D + I +
Sbjct: 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK 221
Query: 172 RDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
++ + K+ + D + +AV K + V+ S + + V D T
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276
Score = 35.6 bits (80), Expect = 0.007
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 38 SIFA-VSGSEDNTAKVWGLTLGSVVSTFKSHQSTILAVAVLSDSRRV-VTSDKAGVIAVW 95
S FA ++ SE + V +T V +T S + + D +V V + + +++
Sbjct: 1 STFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSII 59
Score = 31.8 bits (70), Expect = 0.14
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 148 TVSHSEEITCFTVTWDSQYL-ITGSRDMSLKVWQVVGGKLAQVL-VGHTDH 196
+ + VT D + + + S ++ V + + VG +
Sbjct: 239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPY 289
Score = 31.4 bits (69), Expect = 0.15
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 VNVWQMNSHELQSTMEGHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTFKS 66
++V + S+++ +T+ + ISP+ + V+ + N + +V++T +
Sbjct: 14 ISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA 72
Query: 67 HQS 69
S
Sbjct: 73 GSS 75
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 38.3 bits (87), Expect = 0.001
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 168 ITGSRDMSLKVWQV-VGGKLAQV-LVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDME 225
I + VW + G L +V V + V+ + L V + ++ + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 226 TGGEEHFLAGH 236
A
Sbjct: 68 PDDGALTFAAE 78
Score = 31.7 bits (70), Expect = 0.13
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 8 VNVWQMNSHELQSTME--GHLNTVSCVAISPN-SIFAVSGSEDNTAKVWGLTLGSVVSTF 64
++VW +N + + V + +SP+ V + + + TF
Sbjct: 16 IHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF 75
Query: 65 KSHQSTILAVAVLSDSR 81
+ + ++ +S
Sbjct: 76 AAESALPGSLTHISTDH 92
Score = 31.0 bits (68), Expect = 0.23
Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 9/149 (6%)
Query: 35 SPNSIFAVSGSEDNTAKVWGLTLGSVVSTFK--SHQSTILAVAVLSDSRRV-VTSDKAGV 91
S ++ E VW L ++ + + + V D R + V
Sbjct: 1 SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60
Query: 92 IAVWVADNAQLL-----YSALGPSKC-LTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDE 145
+ + SAL S ++ H +++ G +
Sbjct: 61 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
Query: 146 RFTVSHSEEITCFTVTWDSQYLITGSRDM 174
V + ++ D++ L +
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQ 149
Score = 31.0 bits (68), Expect = 0.27
Identities = 13/99 (13%), Positives = 21/99 (21%), Gaps = 5/99 (5%)
Query: 134 WPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGH 193
QT + V+ V G
Sbjct: 212 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 271
Query: 194 T---DHVSCVAVAVTNKSLVVSGSKDSNLIVW--DMETG 227
V + K L+ +G K ++ V+ E G
Sbjct: 272 QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 310
Score = 26.7 bits (57), Expect = 4.5
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 206 NKSLVVSGSKDSNLIVWDMETGGEEHFLA--GHLGCVTCVKLAGDGT 250
+++ ++ + + VW++ G G V + ++ D
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR 49
Score = 26.7 bits (57), Expect = 4.8
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 1 MGGMDCLVNVWQMNSHELQSTMEGHLNTVSC---VAISPN-SIFAVSGSEDNTAKVW 53
L+ V+ ++ + EG T + + + +G + + V+
Sbjct: 247 CDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVY 303
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 32.6 bits (73), Expect = 0.067
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 2/136 (1%)
Query: 103 LYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTVTW 162
+ + V ++ D +I D + + T+
Sbjct: 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDL 173
Query: 163 DSQYL-ITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIV 221
S L S+ S+ V GG +L ++AV + + + +
Sbjct: 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 233
Query: 222 WDMETGGEEHFLAGHL 237
+ TG + + LA +L
Sbjct: 234 ANRLTGSDVNLLAENL 249
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 30.3 bits (68), Expect = 0.48
Identities = 6/81 (7%), Positives = 21/81 (25%), Gaps = 4/81 (4%)
Query: 163 DSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
+ G + + + + V H + + K + +G + V
Sbjct: 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPH--GLNTSPDGKYFIANGKLSPTVSVI 285
Query: 223 DMETGGEEHFLAGHLGCVTCV 243
++ + + +
Sbjct: 286 AIDKLDD--LFEDKIELRDTI 304
Score = 28.3 bits (63), Expect = 1.6
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 170 GSRDMSLKVWQVVGGKLAQVLVGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVWDMETG 227
G + S ++ G + H H+S K L ++ ++ + ++
Sbjct: 49 GITNESKEIL--GGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIM 104
Score = 27.9 bits (62), Expect = 2.0
Identities = 23/214 (10%), Positives = 61/214 (28%), Gaps = 34/214 (15%)
Query: 42 VSGSEDNTAKVWGLTLGSVVSTFKS-HQSTILAVAVLSDSRRVVTSDKAGVIAVWVADNA 100
SG +V G+ + + + + ++S+ ++ D+ + N
Sbjct: 15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYL-------NG 67
Query: 101 QLLYSALGPSKCLTVTHNMKYIVSGDGDNSLRIWPTSPQTHKDDERFTVSHSEEITCFTV 160
+ + ++ KY+ D N+ R+ K D+ + + + I +
Sbjct: 68 DCHHPHIS---MTDGRYDGKYLFINDKANT-RVARIRLDIMKTDKITHIPNVQAIHGLRL 123
Query: 161 TWDSQYLI----------------TGSRDMSLKVWQVVGGK----LAQVLVGHTDHVSCV 200
+ S D S ++ + + QV+V ++
Sbjct: 124 QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDG--NLDNT 181
Query: 201 AVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLA 234
T K + + + ++
Sbjct: 182 DADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV 215
>d1j36a_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 598
Score = 28.9 bits (64), Expect = 1.3
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 278 LDTYTWQRKYGHLTSSIMMAAVDERLKRRFSVSASMEEI---SKIPIKDNVGSQGL---G 331
+ +R++ LT A ++ ++ME K+ + L
Sbjct: 66 YQSEDLKRQFKALTKLGYAALPEDDYAELLDTLSAMESNFAKVKVCDYKDSTKCDLALDP 125
Query: 332 PEQAALAQSQHFDQLEALWNK 352
+ +++S+ ++L W +
Sbjct: 126 EIEEVISKSRDHEELAYYWRE 146
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/98 (11%), Positives = 35/98 (35%)
Query: 138 PQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSRDMSLKVWQVVGGKLAQVLVGHTDHV 197
+ K +H D+ L+ ++V+ GG+ + +
Sbjct: 211 IENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP 270
Query: 198 SCVAVAVTNKSLVVSGSKDSNLIVWDMETGGEEHFLAG 235
S + K++ V+ +++ + ++ + G++ +
Sbjct: 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQYCET 308
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 279
Score = 26.9 bits (58), Expect = 4.6
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 132 RIWPTSPQTHKDDERFTVSHSEEITCFTVTWDSQYLITGSR-DMSLKVWQVVGGKLAQVL 190
+ + + + + + + + LI + + +L ++ G+L L
Sbjct: 179 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL 237
Query: 191 VGHTDHVSCVAVAVTNKSLVVSGSKDSNLIVW 222
H C VA+ + VV SKD L ++
Sbjct: 238 ESKVKHAQCFDVALMDDGSVVLASKDYRLYIY 269
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.381
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,375,866
Number of extensions: 60512
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 154
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)