BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17244
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
Query: 32 RKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDI 91
+K +V+DLDETL+HS + KP + DF++ V ID + +V KRPHVD FL
Sbjct: 28 KKCVVIDLDETLVHS--------SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQR 79
Query: 92 VSQWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLS 151
+ Q +E V+FTAS+ Y VAD LD + C G+Y KDLS + +LS
Sbjct: 80 MGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELS 138
Query: 152 SIFILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
+ I+DNSP +Y P+NA+P++SWF D +DT
Sbjct: 139 KVIIVDNSPASYIFHPENAVPVQSWFDDMTDT 170
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+DLDETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 16 CVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 67
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 68 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 126
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
ILDNSP +Y PDNA+P+ SWF + SDT
Sbjct: 127 LILDNSPASYVFHPDNAVPVASWFDNMSDT 156
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V++LDETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 17 CVVINLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 68
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 69 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 127
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
ILDNSP +Y PDNA+P+ SWF + SDT
Sbjct: 128 LILDNSPASYVFHPDNAVPVASWFDNMSDT 157
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+DLDETL+HS + KP DF++ V ID + +V KRPHVD FL
Sbjct: 17 CVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRXG 68
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 69 ELFECVLFTASLAKYADPVADXLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 127
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
I DNSP +Y PDNA+P+ SWF + SDT
Sbjct: 128 LIXDNSPASYVFHPDNAVPVASWFDNXSDT 157
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+ LDETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 17 CVVIXLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 68
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 69 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 127
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
ILDNSP +Y PDNA+P+ SWF + SDT
Sbjct: 128 LILDNSPASYVFHPDNAVPVASWFDNMSDT 157
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+DL ETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 20 CVVIDLAETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 71
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 72 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 130
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
ILDNSP +Y PDNA+P+ SWF + SDT
Sbjct: 131 LILDNSPASYVFHPDNAVPVASWFDNMSDT 160
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+DLDETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 20 CVVIDLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 71
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 72 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 130
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
IL NSP +Y PDNA+P+ SWF + SDT
Sbjct: 131 LILANSPASYVFHPDNAVPVASWFDNMSDT 160
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 9/150 (6%)
Query: 34 VLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIVS 93
+V+ LDETL+HS + KP DF++ V ID + +V KRPHVD FL +
Sbjct: 20 CVVIXLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMG 71
Query: 94 QWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLSSI 153
+ +E V+FTAS+ Y VAD LD + C G+Y KDLS + DL +
Sbjct: 72 ELFECVLFTASLAKYADPVADLLDKWGAFRARLFR-ESCVFHRGNYVKDLSRLGRDLRRV 130
Query: 154 FILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
IL NSP +Y PDNA+P+ SWF + SDT
Sbjct: 131 LILANSPASYVFHPDNAVPVASWFDNMSDT 160
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 9/152 (5%)
Query: 32 RKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDI 91
R +V+DLDETL+HS + KP DF++ + I+ + +V KRP+VD FL
Sbjct: 17 RICVVIDLDETLVHS--------SFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRR 68
Query: 92 VSQWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYTKDLSAISPDLS 151
+ + +E V+FTAS+ Y V D LD + C G Y KDLS + DL
Sbjct: 69 MGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQGCYVKDLSRLGRDLR 127
Query: 152 SIFILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
ILDNSP +Y P+NA+P++SWF D +DT
Sbjct: 128 KTLILDNSPASYIFHPENAVPVQSWFDDMADT 159
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%)
Query: 81 KRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDAXXXXXXXXXXXQHCTPELGSYT 140
KRP D+FL +SQ+YE+V+F+++ +Y +A+KLD +HC + G +
Sbjct: 60 KRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHI 119
Query: 141 KDLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWFSDPSD 182
KDLS ++ DLS + I+D P +Y+ P+NAIP++ W + D
Sbjct: 120 KDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADD 161
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 26 RLSIVKRKVLVLDLDETLIHSHHDGITRPTVK-----PGTPP--------DFVLKVTIDR 72
RL KR L++DLD+T+IH+ D PTV PG F L+
Sbjct: 12 RLRQEKRLSLIVDLDQTIIHATVD----PTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSG 67
Query: 73 HPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLD 117
+ +++ RP + FL +S+ YEL ++T + Y VA +D
Sbjct: 68 YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 112
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 26 RLSIVKRKVLVLDLDETLIHSHHDGITRPTVK-----PGTPP--------DFVLKVTIDR 72
RL KR L++ LD+T+IH+ D PTV PG F L+
Sbjct: 20 RLRQEKRLSLIVXLDQTIIHATVD----PTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSG 75
Query: 73 HPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLD 117
+ +++ RP + FL +S+ YEL ++T + Y VA +D
Sbjct: 76 YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 120
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 6 IAQHQAVKYEIFPLSPLSRHRLSIVKRKVLVLDLDETLIHSH-HDGITRPTVKPGTPPDF 64
+A + VK E P++P HRL K LVL+ + L+ + H + ++
Sbjct: 7 MAAYTIVKEEESPIAP---HRLF----KALVLERHQVLVKAQPHVFKSGEIIEGDGGVGT 59
Query: 65 VLKVT-IDRHPVRFFVHKRPHVD----------FFLDIVSQWYELVVFTASMEIYGAAVA 113
V K+T +D HP+ + +HK +D F D++ E VV+ +E G
Sbjct: 60 VTKITFVDGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSK 119
Query: 114 DKL 116
K+
Sbjct: 120 GKI 122
>pdb|3KF6|A Chain A, Crystal Structure Of S. Pombe Stn1-Ten1 Complex
Length = 159
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 71 DRHPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIY 108
D H + F H + ++ F++ +W ++V + A+++IY
Sbjct: 25 DVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDIY 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,672,675
Number of Sequences: 62578
Number of extensions: 210853
Number of successful extensions: 445
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 19
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)