RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17244
(196 letters)
>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain. This model
represents the putative phosphatase domain of a family
of eukaryotic proteins including "Dullard" , and the NLI
interacting factor (NIF)-like phosphatases. This domain
is a member of the haloacid dehalogenase (HAD)
superfamily by virtue of a conserved set of three
catalytic motifs and a conserved fold as predicted by
PSIPRED. The third motif in this family is distinctive
(hhhhDNxPxxa) and aparrently lacking the last aspartate.
This domain is classified as a "Class III" HAD, since
there is no large "cap" domain found between motifs 1
and 2 or motifs 2 and 3. This domain is related to
domains found in FCP1-like phosphatases (TIGR02250), and
together both are detected by the pfam03031.
Length = 162
Score = 232 bits (595), Expect = 3e-79
Identities = 86/165 (52%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 32 RKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDI 91
+K LVLDLDETL+HS P DF + V ID + +V KRPHVD FL+
Sbjct: 1 KKTLVLDLDETLVHST-------FKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLER 53
Query: 92 VSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDLS 151
VS+WYELV+FTAS+E Y V D LD ++ RR YR+ C G Y KDLS + DLS
Sbjct: 54 VSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLS 113
Query: 152 SIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDALR 196
+ I+DNSP +Y PDNAIPIKSWF DP+DT LL L+P L+ LR
Sbjct: 114 KVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLR 158
>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases.
Length = 148
Score = 197 bits (504), Expect = 2e-65
Identities = 73/153 (47%), Positives = 95/153 (62%), Gaps = 5/153 (3%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLD 90
K+K LVLDLDETL+HS H + K T DF++ V ID HP +V KRP VD FL
Sbjct: 1 KKKTLVLDLDETLVHSTH-----RSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLK 55
Query: 91 IVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDL 150
S+ +ELVVFTA + +Y V D LD +++ RR +R C G Y KDLS ++ DL
Sbjct: 56 RASELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLNRDL 115
Query: 151 SSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDT 183
S + I+D+SP ++ P+N IPIK WF DP DT
Sbjct: 116 SKVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148
>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase. This
family contains a number of NLI interacting factor
isoforms and also an N-terminal regions of RNA
polymerase II CTC phosphatase and FCP1 serine
phosphatase. This region has been identified as the
minimal phosphatase domain.
Length = 153
Score = 170 bits (432), Expect = 2e-54
Identities = 73/164 (44%), Positives = 95/164 (57%), Gaps = 17/164 (10%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDIV 92
K LVLDLDETL+HS + +P P DFV +V KRP +D FL +
Sbjct: 1 KTLVLDLDETLVHS--------SFEPDLPFDFV-----LNFNHGVYVKKRPGLDEFLQEL 47
Query: 93 SQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDLSS 152
S++YE+V+FTAS + Y V DKLD ++ + R YR+ CT Y KDLS + DLS
Sbjct: 48 SKYYEIVIFTASSKEYADPVLDKLDPKKKYFKHRLYRESCTF----YVKDLSLLGRDLSR 103
Query: 153 IFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDALR 196
+ I+DNSP ++ PDN IPI ++ DP DT LL LLP L L
Sbjct: 104 VVIVDNSPRSFLLQPDNGIPIPPFYGDPDDTELLKLLPFLKELA 147
>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including
NLI-interacting factor [Transcription].
Length = 390
Score = 135 bits (341), Expect = 2e-38
Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLD 90
+K LVLDLDETL+HS + + T DF++KV I +V KRP +D+FL
Sbjct: 211 PKKTLVLDLDETLVHS--------SFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLG 262
Query: 91 IVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDL 150
+S+ +ELV FTAS++ Y V D LD + R +R+ C LG Y KD+S I L
Sbjct: 263 KLSKIHELVYFTASVKRYADPVLDILD-SDKVFSHRLFRESCVSYLGVYIKDISKIGRSL 321
Query: 151 SSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDALR 196
+ I+DNSP +Y P+NAIPI+ W SD D LL LLP L+ L
Sbjct: 322 DKVIIIDNSPASYEFHPENAIPIEKWISDEHDDELLNLLPFLEDLP 367
Score = 26.7 bits (59), Expect = 9.9
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 26 RLSIVKRKVLVLDLDETLIHSHHDGITRPTVKPGTPP----------DFVLKVTIDRHPV 75
L K+ +LV+DLD+T+IH+ TV P P V +
Sbjct: 20 ALRQDKKLILVVDLDQTIIHT--------TVDPNDPNNVNQSLERTLKSVNDRDPVQEKC 71
Query: 76 RFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDAR 119
++V RP + FL +S YEL ++T Y +A +D
Sbjct: 72 AYYVKARPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPT 115
>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain.
This model represents the phosphatase domain of the
humanRNA polymerase II subunit A C-terminal domain
phosphatase (FCP1, ) and closely related phosphatases
from eukaryotes including plants, fungi and slime mold.
This domain is a member of the haloacid dehalogenase
(HAD) superfamily by virtue of a conserved set of three
catalytic motifs and a conserved fold as predicted by
PSIPRED. The third motif in this family is distinctive
(hhhhDDppphW). This domain is classified as a "Class
III" HAD, since there is no large "cap" domain found
between motifs 1 and 2 or motifs 2 and 3.This domain is
related to domains found in the human NLI interacting
factor-like phosphatases, and together both are detected
by the pfam03031.
Length = 156
Score = 57.7 bits (140), Expect = 6e-11
Identities = 46/162 (28%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVH--------KR 82
K+ LVLDLD+TLIH+ PT+ D + R +R F R
Sbjct: 5 KKLHLVLDLDQTLIHT----TKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLR 60
Query: 83 PHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDARR-----HILRRRYYRQHCTPELG 137
P + FL S+ YE+ V+T Y A+A +D I+ R E G
Sbjct: 61 PFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRD--------ESG 112
Query: 138 S-YTKDLSAISP-DLSSIFILDNSPGAYRGFPDNAIPIKSWF 177
S +TK L + P D S + I+D+ + N I I+ +
Sbjct: 113 SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154
>gnl|CDD|177537 PHA03134, PHA03134, thymidine kinase; Provisional.
Length = 340
Score = 30.9 bits (70), Expect = 0.38
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 43 LIHSHHDGITRP-TVKPGTPPDFVLKVTIDRHPV 75
++H + P ++ G PD + + DRHPV
Sbjct: 99 ILHDRLSTLFGPPSLARGGRPD--VTLVFDRHPV 130
>gnl|CDD|222616 pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria,
eukaryotes and viruses, and is approximately 180 amino
acids in length. It contains a conserved RRXRR motif. It
is often found in association with pfam01844.
Length = 174
Score = 27.1 bits (61), Expect = 4.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 99 VVFTASMEIYGAAVADKLDARRHILRRRYYRQ 130
V+F A +E G + ++L +RR + RRR R+
Sbjct: 73 VLFAAELEHRGQQIKERLLSRRRLRRRRRNRK 104
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily
[General function prediction only].
Length = 264
Score = 27.4 bits (61), Expect = 4.4
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K+L DLD TL+ S+ I+ T +
Sbjct: 4 KLLAFDLDGTLLDSNKT-ISPETKE 27
>gnl|CDD|216065 pfam00693, Herpes_TK, Thymidine kinase from herpesvirus.
Length = 279
Score = 27.3 bits (61), Expect = 5.8
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 44 IHSHHDGITRPTVKPGTPPDFVLKVTIDRHPV 75
+ + +PG PD L DRHPV
Sbjct: 85 LSPL---VGGELAQPGPAPDVTL--VFDRHPV 111
>gnl|CDD|224792 COG1880, CdhB, CO dehydrogenase/acetyl-CoA synthase epsilon subunit
[Energy production and conversion].
Length = 170
Score = 26.7 bits (59), Expect = 5.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 96 YELVVFTASMEIYGAAVADKLDARRHILR---RRYYRQHCTPELGSYTKD 142
Y+LV+F S+ Y + V L +I RYY+ + + +KD
Sbjct: 109 YDLVIFLGSIYYYLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFPNLSKD 158
>gnl|CDD|213561 TIGR00809, secB, protein-export chaperone SecB. This protein acts
as an export-specific cytosolic chaperone. It binds the
mature region of pre-proteins destined for secretion,
prevents aggregation, and delivers them to SecA. This
protein is tetrameric in E. coli. The archaeal
Methanococcus jannaschii homolog MJ0357 has been shown
(PMID:14985117) to share many properties, including
chaperone-like activity, and scores between trusted and
noise [Protein fate, Protein and peptide secretion and
trafficking].
Length = 140
Score = 26.3 bits (58), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 139 YTKDLSAISPDLSSIFILDNSP 160
Y KDLS +P+ IF LD P
Sbjct: 13 YVKDLSFEAPNAPHIFQLDWRP 34
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 27.0 bits (60), Expect = 7.0
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 125 RRYYRQHCTPELGSYTKDLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWFSD-PSDT 183
R Y + GS + L P ++ L P AY G P I + D P+D
Sbjct: 122 RNYAFKFAIEFHGSEAETLMMADPRRHKVYGLPEIPPAY-GHPA---EIGPYSDDGPTDE 177
Query: 184 ALLALL 189
L+++L
Sbjct: 178 KLVSML 183
>gnl|CDD|226355 COG3835, CdaR, Sugar diacid utilization regulator [Transcription /
Signal transduction mechanisms].
Length = 376
Score = 26.9 bits (60), Expect = 7.7
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 90 DIVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQ--HCTPELGSYTKDLSAIS 147
+ V ++ ELV TA + I A + ++L R R + S + +
Sbjct: 96 EEVRKYGELVRMTAELLIEQARLLEQLQWDRR-YREEFVSDLIQQKENTPSLAEWAQRLG 154
Query: 148 PDLSS----IFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALL 189
DLS I + + + + + S S +A+L
Sbjct: 155 IDLSKPRVAILVEGYNEQLH---NLQRM-ARLIQSSESRRNDVAIL 196
>gnl|CDD|220955 pfam11041, DUF2612, Protein of unknown function (DUF2612). This is
a phage protein family expressed from a range of
Proteobacteria species. The function is not known.
Length = 186
Score = 26.5 bits (59), Expect = 7.9
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 76 RFFVHKRPHVDF-FLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTP 134
R V F F ++ + + +V D R +++ + +
Sbjct: 62 RLISVPLTGVYFGFGSTGGLGFDQGPWYGPFDPDTGSVRLDDDQYRKLIKAKILKNIWRG 121
Query: 135 ELGSYTKDLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDA 194
L + L I D ++LDN D ++ I F P A+LA++ LD
Sbjct: 122 TLPNINAALRFIFGDSGKAYVLDNY--------DMSMTI-YVFGKPPSAAILAIIHGLDI 172
Query: 195 L 195
L
Sbjct: 173 L 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.431
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,794,375
Number of extensions: 1049478
Number of successful extensions: 1133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 29
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)