RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17244
(196 letters)
>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion,
structural genomics, PSI, protein structure initiative;
HET: KEG; 2.10A {Homo sapiens}
Length = 195
Score = 205 bits (524), Expect = 4e-68
Identities = 73/175 (41%), Positives = 103/175 (58%), Gaps = 9/175 (5%)
Query: 22 LSRHRLSIVKRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHK 81
L + +K +V+DLDETL+HS + KP + DF++ V ID + +V K
Sbjct: 18 LPEVTVLDYGKKCVVIDLDETLVHS--------SFKPISNADFIVPVEIDGTIHQVYVLK 69
Query: 82 RPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTK 141
RPHVD FL + Q +E V+FTAS+ Y VAD LD R R +R+ C G+Y K
Sbjct: 70 RPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVF-RARLFRESCVFHRGNYVK 128
Query: 142 DLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDALR 196
DLS + +LS + I+DNSP +Y P+NA+P++SWF D +DT LL L+P + L
Sbjct: 129 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLS 183
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1; protein-peptide complex, HAD superfamily,
hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A*
3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Length = 181
Score = 203 bits (519), Expect = 2e-67
Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 9/166 (5%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLD 90
+ +V++LDETL+HS + KP DF++ V ID + +V KRPHVD FL
Sbjct: 14 DKICVVINLDETLVHS--------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQ 65
Query: 91 IVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDL 150
+ + +E V+FTAS+ Y VAD LD R R +R+ C G+Y KDLS + DL
Sbjct: 66 RMGELFECVLFTASLAKYADPVADLLDKWGAF-RARLFRESCVFHRGNYVKDLSRLGRDL 124
Query: 151 SSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDALR 196
+ ILDNSP +Y PDNA+P+ SWF + SDT L LLP + L
Sbjct: 125 RRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 170
>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET:
1PE; 1.83A {Saccharomyces cerevisiae EC1118}
Length = 204
Score = 182 bits (465), Expect = 4e-59
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 24/165 (14%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLD 90
+ LV+ L++ L+HS +H R KRP D+FL
Sbjct: 33 RPLTLVITLEDFLVHSEWS---------------------QKHGWR--TAKRPGADYFLG 69
Query: 91 IVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKDLSAISPDL 150
+SQ+YE+V+F+++ +Y +A+KLD + +++HC + G + KDLS ++ DL
Sbjct: 70 YLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDL 129
Query: 151 SSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPVLDAL 195
S + I+D P +Y+ P+NAIP++ W + D L+ L+P L+ L
Sbjct: 130 SKVIIIDTDPNSYKLQPENAIPMEPWNGEA-DDKLVRLIPFLEYL 173
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 149 bits (378), Expect = 3e-44
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 15/183 (8%)
Query: 19 LSPLSRHRLSIVKRKVLVLDLDETLIHSHHDGITRPTVK---------PGTPPDFVLKVT 69
L + RL KR L++DLD+T+IH+ D + F L+
Sbjct: 5 LESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEG 64
Query: 70 IDRHPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILR-RRYY 128
+ +++ RP + FL +S+ YEL ++T + Y VA +D + + R
Sbjct: 65 PSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLS 124
Query: 129 RQHCTPELGSYTKDLSAISP-DLSSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLA 187
R K L + P D S + ++D+ + + N I + + + +
Sbjct: 125 RDDSG---SLAQKSLRRLFPCDTSMVVVIDDRGDVWD-WNPNLIKVVPYEFFVGIGDINS 180
Query: 188 LLP 190
Sbjct: 181 NFL 183
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 141 bits (355), Expect = 2e-40
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 20/193 (10%)
Query: 19 LSPLSRHRLSIVKRKVLVLDLDETLIHSHHDGITRPTV---------KPGTPPDFVLKVT 69
L + RL KR L++ LD+T+IH+ D + F L+
Sbjct: 13 LESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEG 72
Query: 70 IDRHPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILR-RRYY 128
+ +++ RP + FL +S+ YEL ++T + Y VA +D + + R
Sbjct: 73 PSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLS 132
Query: 129 RQHCTPELGSYTKDLSAISP-DLSSIFILDNSPGAYRGFPDNAIPIKSW-----FSDPSD 182
R K L + P D S + ++D+ + + N I + + D +
Sbjct: 133 RDDSG---SLAQKSLRRLFPCDTSMVVVIDDRGDVWD-WNPNLIKVVPYEFFVGIGDINS 188
Query: 183 TALLALLPVLDAL 195
L P+ +
Sbjct: 189 NFLAKSTPLPEQE 201
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Length = 320
Score = 113 bits (283), Expect = 9e-31
Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 41/183 (22%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLD 90
+K+LVLD+D TL RP++ FL
Sbjct: 139 GKKLLVLDIDYTLFDHRSP----------------------AETGTEL--MRPYLHEFLT 174
Query: 91 IVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYY--------RQHCTPELGSYTKD 142
+ Y++V+++A+ + L + + + H K
Sbjct: 175 SAYEDYDIVIWSATSMRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKP 234
Query: 143 LSAISP-----DLSSIFILDNSPGAYRGFPDNAIPIK----SWFSDPSDTALLALLPVLD 193
L I + S+ + D+ + P + + I+ + + +DT LL L L
Sbjct: 235 LGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGTDTELLKLSDYLR 294
Query: 194 ALR 196
+
Sbjct: 295 KIA 297
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 21/77 (27%)
Query: 123 LRRRY--YRQHCTP---ELGSYTKDLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWF 177
LR Y Y +L + D +F +G I W
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--------TQGLN-----ILEWL 219
Query: 178 SDPS---DTALLALLPV 191
+PS D L +P+
Sbjct: 220 ENPSNTPDKDYLLSIPI 236
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116,
PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY
structural genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 32.5 bits (74), Expect = 0.062
Identities = 5/42 (11%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 16 IFPLSPLSRHRLSIVKRKVLVLDLDETLIHSHHDGITRPTVK 57
+ + + ++ D DET D + +
Sbjct: 7 SKKSEYKTLSTVEHPQ-YIVFCDFDETYFPHTIDEQKQQDIY 47
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP:
c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A*
2b1q_A* 2b1r_A* 2d2v_A*
Length = 244
Score = 31.0 bits (71), Expect = 0.19
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 31 KRKVLVLDLDETLIHSHHD 49
++ +L+ DLD T +
Sbjct: 2 RQLLLISDLDNTWVGDQQA 20
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein,
phophatase-like domain; HET: 1PE PG4 PGE; 2.26A
{Escherichia coli K12} SCOP: c.108.1.10
Length = 275
Score = 30.0 bits (67), Expect = 0.40
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 25 HRLSIVKRKVLVLDLDETLIHSHH 48
H SI + ++ DLD TL+ SH
Sbjct: 2 HMFSIQQPLLVFSDLDGTLLDSHS 25
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 29.8 bits (68), Expect = 0.42
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
+V+ DLD TL+ H +T +
Sbjct: 22 QVVASDLDGTLLSPDHF-LTPYAKE 45
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 29.0 bits (66), Expect = 0.86
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 31 KRKVLVLDLDETLIHSHH 48
K K + +D+D T+ + +
Sbjct: 2 KIKAISIDIDGTITYPNR 19
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 29.0 bits (66), Expect = 0.86
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
+V V DLD TL++ + + I+ +
Sbjct: 3 RVFVFDLDGTLLNDNLE-ISEKDRR 26
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 28.3 bits (64), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K++VLDLD TL +S + I+ +
Sbjct: 6 KLIVLDLDGTLTNSKKE-ISSRNRE 29
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 28.3 bits (64), Expect = 1.4
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K++ +D+D TL+ H I+
Sbjct: 6 KLIAIDMDGTLLLPDHT-ISPAVKN 29
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K++ +DLD TL++S H ++
Sbjct: 5 KLIAIDLDGTLLNSKHQ-VSLENEN 28
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 28.2 bits (64), Expect = 1.6
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVK 57
RK++ D+D TL+ + T++
Sbjct: 2 GRKIVFFDIDGTLLDEQKQ-LPLSTIE 27
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.9
Identities = 4/20 (20%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 55 TVK---PGTPPDFVLKVTID 71
++K + P +K T++
Sbjct: 28 SLKLYADDSAPALAIKATME 47
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 27.9 bits (63), Expect = 1.9
Identities = 6/25 (24%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K++ +D+D TL++ ++ + + T+
Sbjct: 6 KLIAIDIDGTLLNEKNE-LAQATID 29
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 27.9 bits (63), Expect = 2.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K L D+D TL+ I T++
Sbjct: 3 KALFFDIDGTLVSFETHRIPSSTIE 27
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 27.9 bits (63), Expect = 2.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
KVL+LD+D TL+ +++ ++
Sbjct: 13 KVLLLDVDGTLLSFETHKVSQSSID 37
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 27.5 bits (62), Expect = 2.3
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVK 57
+++L L++D L+ S+ I + T
Sbjct: 5 SKQLLALNIDGALLRSNGK-IHQATKD 30
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 27.7 bits (61), Expect = 2.4
Identities = 6/28 (21%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 19 LSPLSRHRLSIVKRKVLVLDLDETLIHS 46
++P+++ ++ ++ D D+TL S
Sbjct: 2 MTPIAQRDGQAIQ--LVGFDGDDTLWKS 27
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 27.6 bits (62), Expect = 2.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K+L+LD+D TL + GI
Sbjct: 6 KLLILDIDGTLRDEVY-GIPESAKH 29
>1fx3_A SECB, protein-export protein SECB; protein trasnport,
translocation, transport protein; 2.50A {Haemophilus
influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Length = 169
Score = 27.3 bits (60), Expect = 2.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 136 LGSYTKDLSAISPDLSSIFILDNSP 160
Y KD+S +P+L IF + P
Sbjct: 21 QRIYVKDVSFEAPNLPHIFQQEWKP 45
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 27.6 bits (62), Expect = 2.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K+L++D D TL + +
Sbjct: 28 KLLLIDFDGTLFVDKDIKVPSENID 52
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet,
chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Length = 153
Score = 26.9 bits (59), Expect = 3.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 136 LGSYTKDLSAISPDLSSIFILDNSP 160
YTKD+S +P+ +F D P
Sbjct: 14 QRIYTKDISFEAPNAPHVFQKDWQP 38
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 27.1 bits (59), Expect = 3.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
+++ LD+D+TLI + +P ++
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPIIE 27
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 27.2 bits (59), Expect = 3.6
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLK 67
+ KV DLD TLI + V P +P D+ +
Sbjct: 57 QGKVAAFDLDGTLITTRSGK-----VFPTSPSDWRIL 88
>1l6r_A Hypothetical protein TA0175; structural genomics, putative
hydrolas midwest center for structural genomics, MCSG,
PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
PDB: 1kyt_A
Length = 227
Score = 27.1 bits (61), Expect = 3.8
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 33 KVLVLDLDETLIHSHH 48
++ +D+D L
Sbjct: 6 RLAAIDVDGNLTDRDR 21
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 4.7
Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 61/184 (33%)
Query: 14 YE---IFPLS-PLSRHRLSI-----------------VKRKVLVLDLDETL--IHS---- 46
++ +FP S + LS+ K ++ E+ I S
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 47 -----------HHDGITRPTVKPGTPPDFVLKVTIDRHPVRFFVHKRPHVD--------- 86
H + + D ++ +D++ H H+
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMT 491
Query: 87 -F---FLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTPELGSYTKD 142
F FLD ++ E + A + + ++Y+ + Y +
Sbjct: 492 LFRMVFLDF--RFLE-----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 143 LSAI 146
++AI
Sbjct: 545 VNAI 548
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 26.6 bits (59), Expect = 5.7
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 31 KRKVLVLDLDETLIHSHHDGI 51
R +++ D+D TL+
Sbjct: 3 SRTLVLFDIDGTLLKVESMNR 23
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 26.0 bits (58), Expect = 9.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
KV+V D+D T ++ +P
Sbjct: 4 KVIVTDMDGTFLNDAKT-YNQPRFM 27
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 25.7 bits (56), Expect = 9.3
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 34 VLVLDLDETLIHSHHD 49
++ DLD TL+ +
Sbjct: 2 IVFTDLDGTLLDERGE 17
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A
{Vanderwaltozyma polyspora}
Length = 341
Score = 25.9 bits (57), Expect = 9.5
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 14 YEIFPLSP---LSRHRLSIVKRKVLV-----LDLDETLI 44
Y FP + LS+ + SIV L L+ + L
Sbjct: 149 YTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQ 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.431
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,333,738
Number of extensions: 204999
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 43
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)