RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17244
(196 letters)
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 155 bits (394), Expect = 3e-49
Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 15/185 (8%)
Query: 12 VKYEIFPLSPLSRHRLSIVKRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVLKVTID 71
++Y + + +V+DLDETL+HS + KP DF++ V ID
Sbjct: 1 MQYLLPEAKAQDS------DKICVVIDLDETLVHS--------SFKPVNNADFIIPVEID 46
Query: 72 RHPVRFFVHKRPHVDFFLDIVSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQH 131
+ +V KRPHVD FL + + +E V+FTAS+ Y VAD LD + R R +R+
Sbjct: 47 GVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRES 105
Query: 132 CTPELGSYTKDLSAISPDLSSIFILDNSPGAYRGFPDNAIPIKSWFSDPSDTALLALLPV 191
C G+Y KDLS + DL + ILDNSP +Y PDNA+P+ SWF + SDT L LLP
Sbjct: 106 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 165
Query: 192 LDALR 196
+ L
Sbjct: 166 FEQLS 170
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 29.5 bits (65), Expect = 0.22
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K L D+D TL+ I T++
Sbjct: 2 KALFFDIDGTLVSFETHRIPSSTIE 26
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 29.2 bits (64), Expect = 0.26
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 31 KRKVLVLDLDETLIHSHHD 49
++ +L+ DLD T +
Sbjct: 2 RQLLLISDLDNTWVGDQQA 20
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium
vivax [TaxId: 5855]}
Length = 283
Score = 28.0 bits (61), Expect = 0.60
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K+L++D D TL + +
Sbjct: 11 KLLLIDFDGTLFVDKDIKVPSENID 35
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 27.7 bits (60), Expect = 0.75
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
+++ LD+D+TLI + +P ++
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPIIE 27
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 27.0 bits (59), Expect = 0.93
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 31 KRKVLVLDLDETLIHSHHDG 50
K K ++ D+D TL + G
Sbjct: 6 KPKAVIFDVDGTLAKMNGRG 25
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV)
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 27.2 bits (59), Expect = 1.2
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
KV+V D+D T ++ +P
Sbjct: 3 KVIVTDMDGTFLNDAKT-YNQPRFM 26
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 26.9 bits (58), Expect = 1.3
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 31 KRKVLVLDLDETLIHSHH 48
K K + +D+D T+ + +
Sbjct: 1 KIKAISIDIDGTITYPNR 18
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 26.9 bits (58), Expect = 1.4
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
+V V DLD TL++ + + I+ +
Sbjct: 3 RVFVFDLDGTLLNDNLE-ISEKDRR 26
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 26.7 bits (57), Expect = 1.7
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 31 KRKVLVLDLDETLIHS 46
K+K+++ D D TL+++
Sbjct: 3 KKKLILFDFDSTLVNN 18
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia
coli [TaxId: 562]}
Length = 271
Score = 26.8 bits (58), Expect = 1.9
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 33 KVLVLDLDETLIHSHH 48
K++ +D+D TL+ H
Sbjct: 5 KLIAIDMDGTLLLPDH 20
>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708
{Chlorobium tepidum [TaxId: 1097]}
Length = 228
Score = 26.3 bits (56), Expect = 2.1
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 32 RKVLVLDLDETLIHSHHD 49
R +++ D+D TL+
Sbjct: 2 RTLVLFDIDGTLLKVESM 19
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 26.4 bits (57), Expect = 2.3
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K++ +DLD TL++S H ++
Sbjct: 2 KLIAIDLDGTLLNSKHQ-VSLENEN 25
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 25.9 bits (56), Expect = 2.5
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 33 KVLVLDLDETLIHSHHDGITRPTVK 57
K+ V DLD TL D P
Sbjct: 6 KLAVFDLDYTLWPFWVDTHVDPPFH 30
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Haemophilus influenzae [TaxId: 727]}
Length = 144
Score = 25.3 bits (55), Expect = 4.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 139 YTKDLSAISPDLSSIFILDNSP 160
Y KD+S +P+L IF + P
Sbjct: 9 YVKDVSFEAPNLPHIFQQEWKP 30
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 25.5 bits (54), Expect = 4.7
Identities = 11/103 (10%), Positives = 24/103 (23%), Gaps = 2/103 (1%)
Query: 34 VLVL-DLDETLIHSHHDGITRPTVK-PGTPPDFVLKVTIDRHPVRFFVHKRPHVDFFLDI 91
+L + DL ++ + + P + K + F +
Sbjct: 1 MLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEA 60
Query: 92 VSQWYELVVFTASMEIYGAAVADKLDARRHILRRRYYRQHCTP 134
+ L + AV L + + Q
Sbjct: 61 LCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRV 103
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 25.3 bits (54), Expect = 5.3
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 33 KVLVLDLDETLIHSHH 48
++ +D+D L
Sbjct: 4 RLAAIDVDGNLTDRDR 19
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 24.9 bits (53), Expect = 7.3
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 31 KRKVLVLDLDETLIHS 46
++ ++ D D T+ +
Sbjct: 3 RKPFIICDFDGTITMN 18
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 24.9 bits (54), Expect = 7.4
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 62 PDFVLKVTIDRHPVRFFVHKRPHVDFFLD--IVSQ 94
+ V I HPVR F + + + + ++
Sbjct: 325 IEVVTMDVIKNHPVRAFANMKMYFNLGGAIYLIPH 359
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'
phosphatase, middle domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 195
Score = 24.7 bits (53), Expect = 8.0
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 31 KRKVLVLDLDETLIHSHHDGITRPTVKPGTPPDFVL 66
+ KV DLD TLI + V P +P D+ +
Sbjct: 20 QGKVAAFDLDGTLITTRSGK-----VFPTSPSDWRI 50
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB
{Escherichia coli [TaxId: 562]}
Length = 134
Score = 24.1 bits (52), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 139 YTKDLSAISPDLSSIFILDNSP 160
YTKD+S +P+ +F D P
Sbjct: 9 YTKDISFEAPNAPHVFQKDWQP 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.431
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 798,594
Number of extensions: 38233
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 36
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)