BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17247
(41 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QFU|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXED
WITH ADP
Length = 394
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
TV G+ LG + + + + ++GK EILANE G+R+TP+ V
Sbjct: 19 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYV 56
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN
pdb|3QML|A Chain A, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|B Chain B, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 390
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
TV G+ LG + + + + ++GK EILANE G+R+TP+ V
Sbjct: 15 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYV 52
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein
5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
TV G+ LG + + +G+ ++G+VEI+AN+ G+R+TP+ V
Sbjct: 27 TVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYV 64
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock
Protein 5 BIP) Atpase Domain In Complex With Small
Molecule Inhibitor
Length = 384
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 30/38 (78%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
TV G+ LG + + +G+ ++G+VEI+AN+ G+R+TP+ V
Sbjct: 6 TVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYV 43
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSKVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
+ V G+ GNS++SI D K E++ANE GDR P ++
Sbjct: 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTIL 51
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGISLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGINLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein
6 (Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + G+VEILAN+ G+R TP+ V
Sbjct: 28 GIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYV 62
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG++ + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
2 (Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 1 MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
S G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 61
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + IG+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSCIGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 6 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 47
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange
Complex
Length = 554
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m
Mutant
Length = 381
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a
Mutant
Length = 381
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e
Mutant
Length = 381
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In
The Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 5 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange
Complex
Length = 668
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
T FGL LGN+++ + + R+ ++I+ NE +R TP+VV
Sbjct: 5 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 42
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
T FGL LGN+++ + + R+ ++I+ NE +R TP+VV
Sbjct: 2 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 39
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGGTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 6 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 40
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
T FGL LGN+++ + + R+ ++I+ NE +R TP+VV
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
T FGL LGN+++ + + R+ ++I+ NE +R TP+VV
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 11 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 45
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
The Apo Form
Length = 391
Score = 38.9 bits (89), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 11 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 45
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1a (Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 30 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 64
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5
And Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5
And Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound
And Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg
Ion-, And K Ion- Bound State
Length = 392
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 12 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 46
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate
Protein From Rattus Norvegicus In Post-Atp Hydrolysis
State
pdb|2V7Z|B Chain B, Crystal Structure Of The 70-Kda Heat Shock Cognate
Protein From Rattus Norvegicus In Post-Atp Hydrolysis
State
Length = 543
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1 MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 27 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 61
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 8 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 32 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 66
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2
(Hspa2) From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 9 GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 43
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 1 MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
MSK + G+ LG +++ + + G+V+++ N G+R TP+VV
Sbjct: 1 MSK-IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVV 40
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3KVG|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Amppnp
pdb|3L4I|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L4I|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70
(Cgd2_20) From Cryptosporidium Parvum In Complex With
Adp And Inorganic Phosphate
pdb|3L6Q|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
pdb|3L6Q|B Chain B, Crystal Structure Of The N-Terminal Domain Of Hsp70 From
Cryptosporidium Parvum (Cgd2_20)
Length = 400
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 7 GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
G+ LG + + +G+ R+ V+I+ N+ G+R TP+ V
Sbjct: 23 GIDLGTTYSCVGVWRNDTVDIVPNDQGNRTTPSYV 57
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
pdb|3GL1|B Chain B, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A
Member Of The Hsp70 Family, From Saccharomyces
Cerevisiae
Length = 387
Score = 30.4 bits (67), Expect = 0.30, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 1 MSKTVF----GLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
M++ VF G+ LG + + + + VEI+ANE G+RVTP+ V
Sbjct: 4 MAEGVFQGAIGIDLGTTYSCVAT-YESSVEIIANEQGNRVTPSFV 47
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK)
CHAPERONE (1-605) Complexed With Adp And Substrate
Length = 605
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
+ G+ LG +++ + I +L N GDR TP+++
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 40
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 383
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
+ G+ LG +++ + I +L N GDR TP+++
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 40
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|B Chain B, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|C Chain C, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
pdb|4B9Q|D Chain D, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak
Length = 605
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
+ G+ LG +++ + I +L N GDR TP+++
Sbjct: 4 IIGIDLGTTNSCVAIXDGTTPRVLENAEGDRTTPSII 40
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 SKTVFGLYLGNSSASIG-ICRDGKVEILANEAGDRVTPAV 40
++TVF ++ NS S G +C G+ + L + G R TPAV
Sbjct: 272 NRTVFE-WVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 310
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 SKTVFGLYLGNSSASIG-ICRDGKVEILANEAGDRVTPAV 40
++TVF ++ NS S G +C G+ + L + G R TPAV
Sbjct: 264 NRTVFE-WVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 302
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 SKTVFGLYLGNSSASIG-ICRDGKVEILANEAGDRVTPAV 40
++TVF ++ NS S G +C G+ + L + G R TPAV
Sbjct: 265 NRTVFE-WVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 303
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 8 LYLGNSSASIGICRDGKVEILAN 30
+Y+G+ + S IC DG EI+ N
Sbjct: 66 IYIGSGTVSCPICMDGYSEIVQN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,118,356
Number of Sequences: 62578
Number of extensions: 23495
Number of successful extensions: 119
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 61
length of query: 41
length of database: 14,973,337
effective HSP length: 14
effective length of query: 27
effective length of database: 14,097,245
effective search space: 380625615
effective search space used: 380625615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)