Query psy17247
Match_columns 41
No_of_seqs 134 out of 1039
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:04:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 99.7 3.6E-17 7.7E-22 100.5 4.9 39 3-41 36-74 (663)
2 PRK11678 putative chaperone; P 99.6 7.1E-16 1.5E-20 93.4 4.2 38 4-41 1-38 (450)
3 PRK01433 hscA chaperone protei 99.6 6.4E-15 1.4E-19 91.4 5.3 38 4-41 20-57 (595)
4 PRK00290 dnaK molecular chaper 99.6 7.2E-15 1.6E-19 91.0 5.1 39 3-41 2-40 (627)
5 PTZ00186 heat shock 70 kDa pre 99.5 9.7E-15 2.1E-19 91.5 5.1 40 2-41 26-65 (657)
6 PRK13410 molecular chaperone D 99.5 9.4E-15 2E-19 91.6 5.0 39 3-41 2-40 (668)
7 PRK13411 molecular chaperone D 99.5 1.1E-14 2.4E-19 90.8 5.0 39 3-41 2-40 (653)
8 PTZ00400 DnaK-type molecular c 99.5 1.2E-14 2.6E-19 90.8 4.9 39 3-41 41-79 (663)
9 PLN03184 chloroplast Hsp70; Pr 99.5 1.5E-14 3.3E-19 90.6 5.3 39 3-41 39-77 (673)
10 CHL00094 dnaK heat shock prote 99.5 1.6E-14 3.4E-19 89.6 5.1 39 3-41 2-40 (621)
11 PRK05183 hscA chaperone protei 99.5 2.5E-14 5.3E-19 88.9 5.3 38 4-41 20-57 (616)
12 TIGR01991 HscA Fe-S protein as 99.5 1.6E-14 3.5E-19 89.4 4.3 37 5-41 1-37 (599)
13 COG0443 DnaK Molecular chapero 99.5 2E-14 4.3E-19 89.2 4.5 39 3-41 5-44 (579)
14 PTZ00009 heat shock 70 kDa pro 99.5 2.3E-14 5.1E-19 89.3 4.7 39 3-41 4-42 (653)
15 TIGR02350 prok_dnaK chaperone 99.5 3.9E-14 8.4E-19 87.2 4.9 38 4-41 1-38 (595)
16 PF00012 HSP70: Hsp70 protein; 99.4 1.9E-13 4.1E-18 83.1 4.5 37 5-41 1-37 (602)
17 KOG0101|consensus 99.3 8.2E-13 1.8E-17 83.0 3.6 39 3-41 7-45 (620)
18 KOG0102|consensus 99.3 2.2E-12 4.8E-17 80.7 3.4 39 3-41 27-65 (640)
19 KOG0103|consensus 98.7 1.1E-08 2.4E-13 65.4 3.0 37 5-41 3-39 (727)
20 TIGR00904 mreB cell shape dete 97.8 1.7E-05 3.6E-10 46.3 2.6 19 5-23 4-22 (333)
21 PRK13928 rod shape-determining 97.8 2.3E-05 5E-10 45.8 2.6 20 3-22 3-22 (336)
22 PRK13929 rod-share determining 97.7 3.9E-05 8.4E-10 45.1 2.8 20 4-25 5-24 (335)
23 PRK13930 rod shape-determining 97.5 0.00012 2.6E-09 42.5 2.6 19 4-22 9-27 (335)
24 PRK13927 rod shape-determining 97.3 0.00028 6.1E-09 41.0 3.3 18 3-20 5-22 (334)
25 PRK10939 autoinducer-2 (AI-2) 97.0 0.0011 2.4E-08 40.9 3.5 21 1-21 1-21 (520)
26 PRK04123 ribulokinase; Provisi 96.9 0.0017 3.6E-08 40.3 3.8 21 1-21 1-21 (548)
27 COG1070 XylB Sugar (pentulose 96.8 0.0031 6.6E-08 39.0 4.1 23 1-23 2-24 (502)
28 PRK00047 glpK glycerol kinase; 96.5 0.0043 9.4E-08 38.1 3.4 19 3-21 5-23 (498)
29 PF00370 FGGY_N: FGGY family o 96.4 0.0058 1.3E-07 34.2 3.5 19 4-22 1-19 (245)
30 PRK10331 L-fuculokinase; Provi 96.4 0.0054 1.2E-07 37.4 3.4 22 3-24 2-24 (470)
31 PTZ00294 glycerol kinase-like 96.3 0.0068 1.5E-07 37.3 3.5 19 4-22 3-21 (504)
32 KOG0104|consensus 96.2 0.0046 1E-07 41.0 2.6 39 3-41 22-61 (902)
33 PF06723 MreB_Mbl: MreB/Mbl pr 96.0 0.004 8.6E-08 37.3 1.6 19 4-22 2-20 (326)
34 TIGR02628 fuculo_kin_coli L-fu 95.9 0.013 2.8E-07 35.8 3.3 19 4-22 2-20 (465)
35 PRK15027 xylulokinase; Provisi 95.8 0.011 2.4E-07 36.2 2.9 18 5-22 2-19 (484)
36 cd00529 RuvC_resolvase Hollida 95.8 0.03 6.6E-07 30.0 4.2 26 4-29 1-28 (154)
37 COG1077 MreB Actin-like ATPase 95.7 0.012 2.6E-07 35.8 2.7 17 4-20 7-23 (342)
38 PLN00130 succinate dehydrogena 95.7 0.00072 1.6E-08 38.4 -2.4 19 4-22 58-76 (213)
39 TIGR00241 CoA_E_activ CoA-subs 95.7 0.018 3.8E-07 32.7 3.1 20 5-24 2-21 (248)
40 TIGR01315 5C_CHO_kinase FGGY-f 95.6 0.016 3.4E-07 36.2 3.0 18 4-21 1-18 (541)
41 PF14450 FtsA: Cell division p 95.5 0.05 1.1E-06 27.9 4.3 21 5-25 1-21 (120)
42 TIGR01311 glycerol_kin glycero 95.5 0.023 4.9E-07 34.9 3.3 18 4-21 2-19 (493)
43 smart00732 YqgFc Likely ribonu 95.4 0.029 6.4E-07 27.2 3.1 18 4-21 2-19 (99)
44 TIGR01314 gntK_FGGY gluconate 95.4 0.021 4.6E-07 35.1 3.0 17 5-21 2-18 (505)
45 TIGR01234 L-ribulokinase L-rib 95.2 0.036 7.7E-07 34.5 3.6 18 4-21 2-19 (536)
46 PLN02295 glycerol kinase 95.2 0.028 6.1E-07 34.8 3.1 20 5-24 2-22 (512)
47 PRK13318 pantothenate kinase; 94.3 0.09 2E-06 30.0 3.6 20 5-24 2-21 (258)
48 PRK13321 pantothenate kinase; 94.3 0.11 2.4E-06 29.7 3.9 20 5-24 2-21 (256)
49 PF02075 RuvC: Crossover junct 94.0 0.24 5.2E-06 26.5 4.6 25 5-29 1-27 (149)
50 PRK00109 Holliday junction res 93.8 0.12 2.7E-06 27.5 3.3 21 2-22 3-23 (138)
51 PF03652 UPF0081: Uncharacteri 93.7 0.14 3.1E-06 27.1 3.5 20 4-23 2-21 (135)
52 PRK13326 pantothenate kinase; 93.5 0.18 4E-06 29.3 3.8 22 3-24 6-27 (262)
53 PLN02669 xylulokinase 93.2 0.15 3.2E-06 32.3 3.3 19 3-21 8-26 (556)
54 PRK00039 ruvC Holliday junctio 92.9 0.14 3E-06 28.0 2.7 26 3-28 2-29 (164)
55 smart00842 FtsA Cell division 92.3 0.29 6.2E-06 26.6 3.4 25 5-29 1-28 (187)
56 TIGR01312 XylB D-xylulose kina 92.3 0.11 2.4E-06 31.5 1.9 19 6-24 1-20 (481)
57 COG1069 AraB Ribulose kinase [ 92.3 0.22 4.7E-06 32.1 3.2 22 1-22 1-22 (544)
58 TIGR02259 benz_CoA_red_A benzo 92.1 0.27 5.8E-06 30.9 3.4 22 3-24 2-23 (432)
59 PRK00292 glk glucokinase; Prov 92.1 0.27 5.9E-06 28.6 3.3 18 4-21 3-20 (316)
60 PRK13320 pantothenate kinase; 92.0 0.41 8.9E-06 27.5 3.9 22 3-24 2-23 (244)
61 TIGR03192 benz_CoA_bzdQ benzoy 91.8 0.34 7.5E-06 28.9 3.5 21 4-24 33-53 (293)
62 PF01548 DEDD_Tnp_IS110: Trans 91.6 0.72 1.6E-05 23.7 4.3 20 5-24 1-20 (144)
63 COG1548 Predicted transcriptio 91.3 0.23 5E-06 30.0 2.4 24 1-24 1-24 (330)
64 COG1521 Pantothenate kinase ty 91.1 0.45 9.8E-06 27.9 3.5 21 5-25 2-22 (251)
65 PRK13331 pantothenate kinase; 90.9 0.57 1.2E-05 27.3 3.8 22 3-24 7-28 (251)
66 PRK09472 ftsA cell division pr 90.8 0.87 1.9E-05 27.8 4.6 26 4-29 9-37 (420)
67 COG0816 Predicted endonuclease 90.6 0.42 9E-06 25.9 2.9 21 3-23 2-22 (141)
68 PF00349 Hexokinase_1: Hexokin 90.3 0.4 8.7E-06 27.0 2.8 18 3-20 63-80 (206)
69 PRK13317 pantothenate kinase; 90.3 0.82 1.8E-05 26.8 4.1 22 3-24 2-23 (277)
70 TIGR02627 rhamnulo_kin rhamnul 89.6 0.2 4.4E-06 30.5 1.3 16 6-21 1-16 (454)
71 PF06277 EutA: Ethanolamine ut 89.5 0.77 1.7E-05 29.2 3.7 17 4-20 4-20 (473)
72 PRK10719 eutA reactivating fac 89.4 0.9 2E-05 28.9 4.0 16 5-20 8-23 (475)
73 TIGR02261 benz_CoA_red_D benzo 89.1 1.2 2.6E-05 26.2 4.2 18 4-21 2-19 (262)
74 COG4820 EutJ Ethanolamine util 88.9 0.77 1.7E-05 27.1 3.3 23 3-25 29-52 (277)
75 PF04848 Pox_A22: Poxvirus A22 88.7 1.8 4E-05 23.5 4.4 26 4-29 2-29 (143)
76 PRK13324 pantothenate kinase; 88.3 1 2.3E-05 26.2 3.6 20 5-24 2-21 (258)
77 TIGR00671 baf pantothenate kin 88.3 1.1 2.3E-05 25.8 3.5 19 6-24 2-20 (243)
78 KOG2517|consensus 88.3 0.78 1.7E-05 29.5 3.2 19 3-21 6-24 (516)
79 TIGR01174 ftsA cell division p 87.6 1.4 3E-05 26.2 3.9 25 5-29 2-29 (371)
80 PF13941 MutL: MutL protein 87.0 1.3 2.8E-05 28.0 3.6 25 5-29 2-28 (457)
81 PRK09698 D-allose kinase; Prov 86.8 1.5 3.2E-05 25.2 3.6 24 1-24 2-26 (302)
82 TIGR00250 RNAse_H_YqgF RNAse H 86.6 0.67 1.5E-05 24.4 2.0 17 6-22 1-17 (130)
83 PF07066 DUF3882: Lactococcus 86.5 1.4 3.1E-05 24.4 3.3 24 2-25 1-29 (159)
84 COG4020 Uncharacterized protei 86.5 1.3 2.9E-05 26.8 3.3 28 1-28 1-28 (332)
85 COG0554 GlpK Glycerol kinase [ 86.1 0.67 1.4E-05 29.7 2.0 22 3-24 5-27 (499)
86 smart00268 ACTIN Actin. ACTIN 85.9 0.93 2E-05 26.8 2.5 23 4-26 2-24 (373)
87 TIGR01865 cas_Csn1 CRISPR-asso 85.8 1.1 2.3E-05 29.9 2.9 18 4-21 2-19 (805)
88 PLN02914 hexokinase 85.7 0.93 2E-05 28.8 2.5 18 3-20 95-112 (490)
89 PRK15080 ethanolamine utilizat 85.7 1.5 3.3E-05 25.3 3.2 20 2-21 23-42 (267)
90 PF03309 Pan_kinase: Type III 85.7 2.2 4.8E-05 23.6 3.8 21 5-25 1-21 (206)
91 TIGR03286 methan_mark_15 putat 85.5 1.4 3.1E-05 27.5 3.2 20 4-23 145-164 (404)
92 PLN02362 hexokinase 85.2 1.5 3.2E-05 28.0 3.3 18 3-20 95-112 (509)
93 PRK14101 bifunctional glucokin 84.2 1 2.2E-05 28.9 2.2 18 4-21 19-36 (638)
94 TIGR01175 pilM type IV pilus a 84.1 3.7 8.1E-05 24.0 4.5 26 3-28 3-30 (348)
95 COG1924 Activator of 2-hydroxy 84.1 2.7 5.8E-05 26.4 3.9 21 4-24 136-156 (396)
96 PRK12408 glucokinase; Provisio 84.0 1.1 2.4E-05 26.6 2.2 18 4-21 17-34 (336)
97 COG0849 ftsA Cell division ATP 83.7 3.8 8.1E-05 25.7 4.5 26 4-29 7-35 (418)
98 PF01385 OrfB_IS605: Probable 83.1 1 2.2E-05 24.4 1.7 21 3-23 124-144 (227)
99 COG2410 Predicted nuclease (RN 82.3 2.3 5E-05 24.0 2.9 27 4-30 2-29 (178)
100 PRK13311 N-acetyl-D-glucosamin 82.1 2.4 5.2E-05 24.0 3.0 20 5-24 2-22 (256)
101 PTZ00288 glucokinase 1; Provis 81.2 2.3 5E-05 26.4 2.9 19 4-22 27-45 (405)
102 PLN02405 hexokinase 81.0 1.8 3.9E-05 27.6 2.5 18 3-20 95-112 (497)
103 cd00012 ACTIN Actin; An ubiqui 80.5 1.7 3.8E-05 25.6 2.2 26 5-30 1-27 (371)
104 PLN02596 hexokinase-like 80.3 2.1 4.5E-05 27.3 2.5 18 3-20 96-113 (490)
105 COG1940 NagC Transcriptional r 80.0 5.3 0.00011 23.1 4.0 23 2-24 5-28 (314)
106 PF01869 BcrAD_BadFG: BadF/Bad 80.0 4.6 9.9E-05 22.9 3.7 18 6-23 1-18 (271)
107 PRK00976 hypothetical protein; 77.9 6 0.00013 24.2 3.9 26 4-29 2-27 (326)
108 COG2971 Predicted N-acetylgluc 77.6 4.5 9.8E-05 24.5 3.3 21 1-21 3-23 (301)
109 PF14574 DUF4445: Domain of un 77.3 4.5 9.7E-05 25.3 3.3 18 4-21 2-19 (412)
110 PRK09557 fructokinase; Reviewe 77.2 4.2 9E-05 23.4 3.0 20 5-24 2-22 (301)
111 PTZ00107 hexokinase; Provision 77.2 2.6 5.7E-05 26.6 2.3 18 3-20 74-91 (464)
112 PRK13322 pantothenate kinase; 76.5 4.2 9.1E-05 23.4 2.9 18 5-22 2-19 (246)
113 COG5026 Hexokinase [Carbohydra 75.7 3.8 8.3E-05 26.2 2.7 18 3-20 75-92 (466)
114 PRK13310 N-acetyl-D-glucosamin 74.9 5.4 0.00012 23.0 3.1 17 5-21 2-18 (303)
115 TIGR03285 methan_mark_14 putat 74.9 2 4.3E-05 27.1 1.4 12 3-14 193-204 (445)
116 PRK13917 plasmid segregation p 74.0 8.5 0.00018 23.1 3.9 18 3-20 2-19 (344)
117 PF09887 DUF2114: Uncharacteri 73.0 2.3 5E-05 26.9 1.3 12 3-14 196-207 (448)
118 COG4819 EutA Ethanolamine util 70.8 3 6.5E-05 26.3 1.5 15 5-19 7-21 (473)
119 PTZ00466 actin-like protein; P 70.0 6.1 0.00013 23.9 2.6 26 1-26 10-35 (380)
120 PTZ00452 actin; Provisional 70.0 6.8 0.00015 23.7 2.8 24 3-26 5-28 (375)
121 PF05378 Hydant_A_N: Hydantoin 69.8 16 0.00035 20.0 4.1 18 6-23 2-19 (176)
122 KOG2912|consensus 69.7 1.8 4E-05 27.0 0.4 13 7-19 106-118 (419)
123 PRK05082 N-acetylmannosamine k 68.9 9.8 0.00021 21.7 3.3 21 4-24 2-23 (291)
124 COG0145 HyuA N-methylhydantoin 68.8 9.7 0.00021 25.3 3.5 25 5-29 280-304 (674)
125 PF08735 DUF1786: Putative pyr 67.8 13 0.00028 22.1 3.6 24 3-26 167-190 (254)
126 PF01968 Hydantoinase_A: Hydan 67.2 13 0.00028 21.8 3.5 26 4-29 78-103 (290)
127 TIGR00555 panK_eukar pantothen 66.2 18 0.0004 21.5 4.1 24 5-28 2-26 (279)
128 COG3734 DgoK 2-keto-3-deoxy-ga 66.2 21 0.00046 21.8 4.3 21 3-23 5-25 (306)
129 PTZ00280 Actin-related protein 66.1 7.7 0.00017 23.6 2.5 23 4-26 5-27 (414)
130 TIGR00228 ruvC crossover junct 64.8 5.4 0.00012 21.9 1.6 24 5-28 1-26 (156)
131 TIGR03123 one_C_unchar_1 proba 63.3 17 0.00036 22.1 3.5 25 4-28 129-153 (318)
132 PF06406 StbA: StbA protein; 62.1 22 0.00047 21.0 3.9 21 5-25 2-22 (318)
133 PF11104 PilM_2: Type IV pilus 61.3 32 0.00069 20.3 4.5 26 4-29 181-206 (340)
134 TIGR00749 glk glucokinase, pro 58.4 11 0.00024 22.0 2.2 17 6-22 1-17 (316)
135 COG0145 HyuA N-methylhydantoin 57.3 39 0.00085 22.6 4.7 27 3-29 2-30 (674)
136 COG4822 CbiK Cobalamin biosynt 56.6 9.9 0.00021 22.6 1.8 15 1-15 1-15 (265)
137 PTZ00004 actin-2; Provisional 56.1 14 0.00031 22.2 2.5 23 4-26 7-29 (378)
138 PF12565 DUF3747: Protein of u 56.0 36 0.00079 19.3 4.0 28 5-32 102-129 (181)
139 PF14239 RRXRR: RRXRR protein 55.9 33 0.00073 19.3 3.7 22 3-24 51-72 (176)
140 COG0817 RuvC Holliday junction 55.5 6.4 0.00014 21.9 0.8 16 6-21 1-16 (160)
141 COG4943 Predicted signal trans 55.2 1.6 3.6E-05 28.1 -1.6 24 8-31 420-443 (524)
142 PF04312 DUF460: Protein of un 55.0 34 0.00073 18.7 3.9 25 4-28 33-57 (138)
143 TIGR00744 ROK_glcA_fam ROK fam 54.6 16 0.00034 21.0 2.4 19 6-24 1-20 (318)
144 KOG1369|consensus 53.7 21 0.00047 22.9 3.0 18 3-20 86-103 (474)
145 TIGR03281 methan_mark_12 putat 53.0 17 0.00037 22.4 2.4 20 5-24 1-20 (326)
146 TIGR01319 glmL_fam conserved h 49.0 11 0.00025 24.1 1.3 14 8-21 1-14 (463)
147 PRK13325 bifunctional biotin-- 48.2 35 0.00075 22.3 3.4 22 3-24 338-359 (592)
148 COG4065 Uncharacterized protei 48.0 11 0.00024 23.8 1.1 12 3-14 226-237 (480)
149 PRK13329 pantothenate kinase; 47.2 24 0.00051 20.5 2.4 18 4-21 2-19 (249)
150 PTZ00281 actin; Provisional 46.6 27 0.00058 21.1 2.6 23 4-26 7-29 (376)
151 COG3513 Predicted CRISPR-assoc 45.8 28 0.00062 24.4 2.8 21 3-23 4-24 (1088)
152 TIGR03725 bact_YeaZ universal 45.4 44 0.00095 18.4 3.2 20 5-24 1-20 (202)
153 COG4012 Uncharacterized protei 44.9 56 0.0012 20.2 3.7 25 4-28 228-252 (342)
154 COG2200 Rtn c-di-GMP phosphodi 44.6 1 2.2E-05 25.8 -3.5 22 9-30 156-177 (256)
155 PF00022 Actin: Actin; InterP 44.6 18 0.00039 21.4 1.6 27 3-29 4-31 (393)
156 PF14796 AP3B1_C: Clathrin-ada 42.7 19 0.00041 19.6 1.4 10 4-13 134-143 (145)
157 KOG0681|consensus 42.5 19 0.00041 24.0 1.6 23 4-26 24-46 (645)
158 TIGR03723 bact_gcp putative gl 42.3 53 0.0011 19.5 3.4 20 5-24 1-20 (314)
159 PF05971 Methyltransf_10: Prot 41.4 4.9 0.00011 24.2 -1.1 14 4-17 103-116 (299)
160 PHA02942 putative transposase; 41.1 32 0.00069 21.2 2.4 14 4-17 178-191 (383)
161 PF00480 ROK: ROK family; Int 40.3 31 0.00066 18.1 2.0 15 7-21 1-15 (179)
162 PF08787 Alginate_lyase2: Algi 39.4 68 0.0015 18.3 3.4 28 7-34 160-187 (236)
163 PRK03011 butyrate kinase; Prov 39.3 73 0.0016 19.5 3.7 23 3-25 2-24 (358)
164 KOG0086|consensus 39.1 17 0.00038 20.7 1.0 28 2-30 38-65 (214)
165 TIGR02529 EutJ ethanolamine ut 39.1 58 0.0013 18.5 3.1 23 5-27 110-132 (239)
166 KOG2111|consensus 39.0 97 0.0021 19.4 4.1 23 4-26 294-317 (346)
167 PLN02666 5-oxoprolinase 38.9 85 0.0019 22.7 4.3 27 3-29 9-37 (1275)
168 PF12049 DUF3531: Protein of u 37.2 23 0.0005 19.5 1.2 10 5-14 93-102 (146)
169 PF05035 DGOK: 2-keto-3-deoxy- 36.5 40 0.00087 20.1 2.2 16 9-24 1-17 (287)
170 PRK13328 pantothenate kinase; 36.4 59 0.0013 18.9 2.9 20 4-23 2-21 (255)
171 PF07318 DUF1464: Protein of u 36.2 37 0.00079 21.1 2.1 20 7-26 1-21 (343)
172 COG4502 5'(3')-deoxyribonucleo 36.2 14 0.0003 20.8 0.3 13 1-13 1-13 (180)
173 PF02685 Glucokinase: Glucokin 35.2 51 0.0011 19.8 2.5 17 7-23 2-18 (316)
174 PF09159 Ydc2-catalyt: Mitocho 35.1 57 0.0012 19.1 2.7 16 5-20 1-16 (274)
175 PRK13327 pantothenate kinase; 34.4 89 0.0019 18.1 3.4 21 3-23 112-132 (242)
176 TIGR03706 exo_poly_only exopol 34.3 96 0.0021 18.1 3.6 25 5-29 2-28 (300)
177 cd01459 vWA_copine_like VWA Co 34.0 30 0.00065 20.3 1.4 12 3-14 33-44 (254)
178 PRK13333 pantothenate kinase; 34.0 73 0.0016 18.2 2.9 19 4-23 85-103 (206)
179 PRK10854 exopolyphosphatase; P 32.8 1E+02 0.0022 19.7 3.6 28 3-30 11-40 (513)
180 TIGR01547 phage_term_2 phage t 32.5 30 0.00065 20.7 1.3 9 7-15 232-240 (396)
181 PF15088 NADH_dh_m_C1: NADH de 31.0 23 0.0005 16.0 0.5 12 5-16 16-27 (49)
182 TIGR03031 cas_csx12 CRISPR-ass 30.2 37 0.00079 23.1 1.5 15 6-20 2-16 (802)
183 PF03237 Terminase_6: Terminas 30.1 1.1E+02 0.0024 17.3 3.9 18 3-20 226-247 (384)
184 PF11000 DUF2840: Protein of u 30.0 48 0.001 18.3 1.7 15 7-21 50-64 (149)
185 PF13927 Ig_3: Immunoglobulin 29.7 23 0.00051 15.1 0.4 9 9-18 65-73 (75)
186 PRK09604 UGMP family protein; 29.6 1.2E+02 0.0027 18.1 3.6 20 4-23 2-21 (332)
187 PF02966 DIM1: Mitosis protein 29.3 55 0.0012 17.7 1.9 13 3-15 84-96 (133)
188 PRK00074 guaA GMP synthase; Re 29.1 40 0.00087 21.5 1.5 16 2-17 3-18 (511)
189 KOG0094|consensus 28.6 32 0.0007 20.1 0.9 13 3-15 52-64 (221)
190 KOG0182|consensus 27.5 50 0.0011 19.6 1.6 23 4-26 204-226 (246)
191 COG4972 PilM Tfp pilus assembl 27.2 91 0.002 19.6 2.7 24 5-28 195-218 (354)
192 cd02986 DLP Dim1 family, Dim1- 25.6 62 0.0013 16.9 1.6 13 3-15 78-90 (114)
193 KOG1939|consensus 24.7 1.2E+02 0.0026 21.7 3.1 19 3-21 305-323 (1247)
194 COG4328 Predicted nuclease (RN 24.7 44 0.00096 20.0 1.0 9 4-12 2-10 (266)
195 cd01744 GATase1_CPSase Small c 23.1 14 0.0003 19.9 -1.2 27 6-32 2-30 (178)
196 COG1640 MalQ 4-alpha-glucanotr 22.7 51 0.0011 21.5 1.1 15 3-17 346-360 (520)
197 PF07549 Sec_GG: SecD/SecF GG 22.6 33 0.00071 13.6 0.2 8 5-12 10-17 (31)
198 KOG0680|consensus 22.6 1.1E+02 0.0024 19.4 2.5 30 1-30 1-30 (400)
199 PF11735 CAP59_mtransfer: Cryp 22.5 75 0.0016 18.5 1.7 16 9-24 29-44 (241)
200 KOG0628|consensus 22.4 55 0.0012 21.5 1.2 13 5-17 238-250 (511)
201 PRK11031 guanosine pentaphosph 22.1 2.2E+02 0.0048 18.1 4.0 28 3-30 6-35 (496)
202 PF02541 Ppx-GppA: Ppx/GppA ph 21.5 1.8E+02 0.0038 16.7 3.5 25 3-27 112-136 (285)
203 PF11220 DUF3015: Protein of u 21.5 53 0.0011 17.9 0.9 11 5-15 41-51 (144)
204 COG2433 Uncharacterized conser 21.0 2.3E+02 0.005 19.3 3.8 25 4-28 245-269 (652)
205 PF02738 Ald_Xan_dh_C2: Molybd 20.1 2.2E+02 0.0048 18.1 3.5 20 13-32 50-70 (547)
206 PF15530 Toxin_50: Putative to 20.1 66 0.0014 18.1 1.1 9 4-12 87-95 (168)
No 1
>KOG0100|consensus
Probab=99.69 E-value=3.6e-17 Score=100.47 Aligned_cols=39 Identities=44% Similarity=0.883 Sum_probs=37.5
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
..+||||||||||||+++++|+++||+|++|+|.+||+|
T Consensus 36 gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyV 74 (663)
T KOG0100|consen 36 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYV 74 (663)
T ss_pred ceEEEEecCCceeeEEEEeCCeEEEEecCCCCcccccee
Confidence 468999999999999999999999999999999999997
No 2
>PRK11678 putative chaperone; Provisional
Probab=99.61 E-value=7.1e-16 Score=93.42 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=35.8
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
++||||||||||+||++++++++++++++|++++||+|
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v 38 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL 38 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeee
Confidence 36999999999999999999999999999999999986
No 3
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.56 E-value=6.4e-15 Score=91.44 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=36.3
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
.+|||||||||||||++.++++++++|++|++.+||+|
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V 57 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTI 57 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEE
Confidence 48999999999999999999999999999999999986
No 4
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.55 E-value=7.2e-15 Score=91.01 Aligned_cols=39 Identities=28% Similarity=0.655 Sum_probs=36.9
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++|||||||||+||++++|++++++|++|+|.+||+|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V 40 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVV 40 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEE
Confidence 468999999999999999999999999999999999986
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.54 E-value=9.7e-15 Score=91.48 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=37.4
Q ss_pred CceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 2 SKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 2 ~~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
++.++||||||||||||+++++++++++|+.|.+.+||+|
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V 65 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVV 65 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEE
Confidence 4568999999999999999999999999999999999986
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.54 E-value=9.4e-15 Score=91.56 Aligned_cols=39 Identities=33% Similarity=0.623 Sum_probs=37.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++||||||||||||++++|++++++|+.|++.+||+|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V 40 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVV 40 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEE
Confidence 568999999999999999999999999999999999986
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.54 E-value=1.1e-14 Score=90.83 Aligned_cols=39 Identities=31% Similarity=0.641 Sum_probs=37.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++||||||||||||++++|++++++|++|+|.+||+|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V 40 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIV 40 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEE
Confidence 468999999999999999999999999999999999986
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.53 E-value=1.2e-14 Score=90.84 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=36.9
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
..++||||||||||||+++++++++++|++|+|.+||+|
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V 79 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVV 79 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEE
Confidence 368999999999999999999999999999999999986
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.53 E-value=1.5e-14 Score=90.60 Aligned_cols=39 Identities=36% Similarity=0.665 Sum_probs=37.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++||||||||||||++++|++++++|++|++.+||+|
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V 77 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 77 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEE
Confidence 468999999999999999999999999999999999986
No 10
>CHL00094 dnaK heat shock protein 70
Probab=99.53 E-value=1.6e-14 Score=89.59 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=37.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++||||||||||+|++++|++++++|++|++.+||+|
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V 40 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIV 40 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEE
Confidence 479999999999999999999999999999999999986
No 11
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.52 E-value=2.5e-14 Score=88.88 Aligned_cols=38 Identities=32% Similarity=0.626 Sum_probs=36.3
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
.+||||||||||+||++++|++++++|++|++.+||+|
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V 57 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVV 57 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEE
Confidence 57999999999999999999999999999999999986
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.51 E-value=1.6e-14 Score=89.41 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=35.4
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+|||||||||||||++++|++++++|++|++.+||+|
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V 37 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVV 37 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEE
Confidence 5899999999999999999999999999999999986
No 13
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2e-14 Score=89.16 Aligned_cols=39 Identities=33% Similarity=0.706 Sum_probs=36.7
Q ss_pred ceEEEEeCCcceEEEEEEeCC-eEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG-KVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~-~~~ii~~~~~~~~~pS~V 41 (41)
+.+|||||||||||||+++++ .++++.|.+|.|++||+|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv 44 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVV 44 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEE
Confidence 479999999999999999988 799999999999999986
No 14
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.51 E-value=2.3e-14 Score=89.33 Aligned_cols=39 Identities=36% Similarity=0.725 Sum_probs=36.9
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.++|||||||||+||+++++++++++|++|+|.+||+|
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V 42 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYV 42 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEE
Confidence 468999999999999999999999999999999999986
No 15
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.49 E-value=3.9e-14 Score=87.15 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=35.9
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
.++|||||||||++|++++|++++++|++|++.+||+|
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V 38 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVV 38 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEE
Confidence 37999999999999999999999999999999999986
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.43 E-value=1.9e-13 Score=83.07 Aligned_cols=37 Identities=43% Similarity=0.803 Sum_probs=31.5
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
++||||||+||+||++++++++++.|+.|+|.+||+|
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v 37 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVV 37 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEE
T ss_pred CEEEEeccCCEEEEEEEecccccccccccccccccee
Confidence 6899999999999999999999999999999999985
No 17
>KOG0101|consensus
Probab=99.35 E-value=8.2e-13 Score=82.97 Aligned_cols=39 Identities=44% Similarity=0.836 Sum_probs=37.2
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
+.+||||||||+|||+++.++++++++|++|+|++||+|
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~v 45 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVV 45 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCcccccee
Confidence 578999999999999999999999999999999999986
No 18
>KOG0102|consensus
Probab=99.29 E-value=2.2e-12 Score=80.69 Aligned_cols=39 Identities=33% Similarity=0.627 Sum_probs=37.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
..++|||+||||||+|+++++.++++.|.+|.|++||+|
T Consensus 27 ~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvv 65 (640)
T KOG0102|consen 27 GKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVV 65 (640)
T ss_pred CceeeEeeeccceeEEEEeCCCceEeecccccccCCceE
Confidence 468999999999999999999999999999999999986
No 19
>KOG0103|consensus
Probab=98.71 E-value=1.1e-08 Score=65.37 Aligned_cols=37 Identities=43% Similarity=0.768 Sum_probs=35.8
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEEeCCCCCeeeEeeC
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii~~~~~~~~~pS~V 41 (41)
++|||||.-||.+|+.+.+..++|.|+.++|.+|++|
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~v 39 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIV 39 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCccee
Confidence 8999999999999999999999999999999999986
No 20
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=97.83 E-value=1.7e-05 Score=46.29 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.8
Q ss_pred EEEEeCCcceEEEEEEeCC
Q psy17247 5 VFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~ 23 (41)
-+||||||+||+++...++
T Consensus 4 ~~giDlGt~~s~i~~~~~~ 22 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG 22 (333)
T ss_pred eeEEecCcceEEEEECCCC
Confidence 4999999999999886443
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=97.77 E-value=2.3e-05 Score=45.79 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.3
Q ss_pred ceEEEEeCCcceEEEEEEeC
Q psy17247 3 KTVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~ 22 (41)
+.-+||||||+|+.++...+
T Consensus 3 ~~~~gIDlGt~~~~i~~~~~ 22 (336)
T PRK13928 3 GRDIGIDLGTANVLVYVKGK 22 (336)
T ss_pred CceeEEEcccccEEEEECCC
Confidence 34589999999999988633
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=97.70 E-value=3.9e-05 Score=45.08 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=15.0
Q ss_pred eEEEEeCCcceEEEEEEeCCeE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~ 25 (41)
..+||||||+|+++ |.+++.
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~ 24 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKG 24 (335)
T ss_pred CeEEEEcccccEEE--EECCCc
Confidence 46999999999985 444443
No 23
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=97.46 E-value=0.00012 Score=42.46 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.1
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
..+||||||+|++++.+.+
T Consensus 9 ~~vgiDlGt~~t~i~~~~~ 27 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGK 27 (335)
T ss_pred cceEEEcCCCcEEEEECCC
Confidence 3599999999999998733
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=97.35 E-value=0.00028 Score=41.01 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.9
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
+..+||||||+|++++..
T Consensus 5 ~~~igIDlGt~~~~i~~~ 22 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVK 22 (334)
T ss_pred cceeEEEcCcceEEEEEC
Confidence 457999999999998554
No 25
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.99 E-value=0.0011 Score=40.85 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=18.9
Q ss_pred CCceEEEEeCCcceEEEEEEe
Q psy17247 1 MSKTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~ 21 (41)
||+.++|||+|||++-+++++
T Consensus 1 ~m~~~lgID~GTts~Ka~l~d 21 (520)
T PRK10939 1 SMSYLMALDAGTGSIRAVIFD 21 (520)
T ss_pred CCcEEEEEecCCCceEEEEEC
Confidence 567899999999999999994
No 26
>PRK04123 ribulokinase; Provisional
Probab=96.92 E-value=0.0017 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred CCceEEEEeCCcceEEEEEEe
Q psy17247 1 MSKTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~ 21 (41)
|+..++|||+|||++-+++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred CCcEEEEEecCCCceEEEEEE
Confidence 778899999999999999996
No 27
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.0031 Score=38.97 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.8
Q ss_pred CCceEEEEeCCcceEEEEEEeCC
Q psy17247 1 MSKTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~~ 23 (41)
|++.++|||+|||+.-+.+++.+
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCC
Confidence 56789999999999999999544
No 28
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.47 E-value=0.0043 Score=38.05 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.9
Q ss_pred ceEEEEeCCcceEEEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~ 21 (41)
..++|||+|||+.-+++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CEEEEEecCCCceEEEEEC
Confidence 4589999999999999994
No 29
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.42 E-value=0.0058 Score=34.15 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.8
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.++|||+|||+.-+++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 3789999999999999963
No 30
>PRK10331 L-fuculokinase; Provisional
Probab=96.37 E-value=0.0054 Score=37.38 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.4
Q ss_pred ceEEEEeCCcceEEEEEEe-CCe
Q psy17247 3 KTVFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~-~~~ 24 (41)
+.++|||+|||+.-+++++ +|+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCc
Confidence 4689999999999999994 453
No 31
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.27 E-value=0.0068 Score=37.30 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=17.2
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.++|||+|||+.-+++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 7899999999999999953
No 32
>KOG0104|consensus
Probab=96.20 E-value=0.0046 Score=41.04 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=34.1
Q ss_pred ceEEEEeCCcceEEEEEEeCCe-EEEEeCCCCCeeeEeeC
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK-VEILANEAGDRVTPAVV 41 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~-~~ii~~~~~~~~~pS~V 41 (41)
..+++||||+-+--+|+...|- .+|+.|...+|-+|+.|
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~v 61 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIV 61 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceE
Confidence 3578999999999999998775 48888999999999875
No 33
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=96.04 E-value=0.004 Score=37.27 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=14.0
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.-+||||||+|+.|..-.+
T Consensus 2 ~~igIDLGT~~t~i~~~~~ 20 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGK 20 (326)
T ss_dssp SEEEEEE-SSEEEEEETTT
T ss_pred CceEEecCcccEEEEECCC
Confidence 4689999999999865433
No 34
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.87 E-value=0.013 Score=35.79 Aligned_cols=19 Identities=11% Similarity=0.030 Sum_probs=16.8
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.++|||+|||+.-+++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 4789999999999999953
No 35
>PRK15027 xylulokinase; Provisional
Probab=95.84 E-value=0.011 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=16.2
Q ss_pred EEEEeCCcceEEEEEEeC
Q psy17247 5 VFGLYLGNSSASIGICRD 22 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~ 22 (41)
++|||+|||+.-+++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 689999999999999953
No 36
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=95.78 E-value=0.03 Score=30.02 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR--DGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~--~~~~~ii~ 29 (41)
.++|||.|++|..+|+.+ +++++++.
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEE
Confidence 379999999999999973 55665543
No 37
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=95.73 E-value=0.012 Score=35.80 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.9
Q ss_pred eEEEEeCCcceEEEEEE
Q psy17247 4 TVFGLYLGNSSASIGIC 20 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~ 20 (41)
.-+||||||.|..|.+-
T Consensus 7 ~diGIDLGTanTlV~~k 23 (342)
T COG1077 7 NDIGIDLGTANTLVYVK 23 (342)
T ss_pred ccceeeecccceEEEEc
Confidence 36899999999999876
No 38
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=95.66 E-value=0.00072 Score=38.39 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.4
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.+||+|+||+|+|++..++
T Consensus 58 d~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 58 DILGTGLGTNNAIREEREK 76 (213)
T ss_pred ceeccCCCcchHHHHHHhc
Confidence 4799999999999987754
No 39
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=95.65 E-value=0.018 Score=32.68 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.3
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
.+|||.|||++.++++++++
T Consensus 2 ~lGIDiGtts~K~vl~d~g~ 21 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDGK 21 (248)
T ss_pred EEEEEcChhheEEEEEcCCE
Confidence 68999999999999997543
No 40
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.62 E-value=0.016 Score=36.15 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.2
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++|||+|||++-+++++
T Consensus 1 ~~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 1 HYIGVDVGTGSARACIID 18 (541)
T ss_pred CEEEEEecCcCEEEEEEc
Confidence 368999999999999994
No 41
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.53 E-value=0.05 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=16.9
Q ss_pred EEEEeCCcceEEEEEEeCCeE
Q psy17247 5 VFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~ 25 (41)
+++||+|++..++++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 579999999999999977543
No 42
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.46 E-value=0.023 Score=34.91 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=16.4
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++|||+|||+.-+++++
T Consensus 2 ~~lgiDiGtt~iKa~l~d 19 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFD 19 (493)
T ss_pred eEEEEecCCCceEEEEEC
Confidence 579999999999999994
No 43
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=95.42 E-value=0.029 Score=27.21 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.2
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++|||+|.|+.-+|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 479999999999999984
No 44
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.38 E-value=0.021 Score=35.13 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=15.8
Q ss_pred EEEEeCCcceEEEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR 21 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~ 21 (41)
++|||+|||+.-+++++
T Consensus 2 ~lgiDiGtt~~K~~l~d 18 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFE 18 (505)
T ss_pred EEEEeccccceEEEEEc
Confidence 68999999999999994
No 45
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.21 E-value=0.036 Score=34.47 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=16.8
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++|||+|||+.-+++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 479999999999999998
No 46
>PLN02295 glycerol kinase
Probab=95.18 E-value=0.028 Score=34.75 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.1
Q ss_pred EEEEeCCcceEEEEEEe-CCe
Q psy17247 5 VFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~-~~~ 24 (41)
++|||+|||+.-+++++ +|+
T Consensus 2 vlgID~GTts~Ka~l~d~~G~ 22 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR 22 (512)
T ss_pred EEEEecCCCceEEEEECCCCC
Confidence 68999999999999994 443
No 47
>PRK13318 pantothenate kinase; Reviewed
Probab=94.31 E-value=0.09 Score=30.04 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=17.9
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
+++||+|.|+..++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 48
>PRK13321 pantothenate kinase; Reviewed
Probab=94.27 E-value=0.11 Score=29.73 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=17.8
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
.++||+|.|+..+|++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998653
No 49
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=94.00 E-value=0.24 Score=26.55 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=18.3
Q ss_pred EEEEeCCcceEEEEEE--eCCeEEEEe
Q psy17247 5 VFGLYLGNSSASIGIC--RDGKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~--~~~~~~ii~ 29 (41)
++|||-|.+++-+|+. .+++.+++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence 6899999999999998 456666654
No 50
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=93.84 E-value=0.12 Score=27.45 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=18.2
Q ss_pred CceEEEEeCCcceEEEEEEeC
Q psy17247 2 SKTVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 2 ~~~~iGiD~GTtns~va~~~~ 22 (41)
++.++|||+|+..+-+|+.+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecC
Confidence 456999999999999999854
No 51
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=93.75 E-value=0.14 Score=27.12 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.0
Q ss_pred eEEEEeCCcceEEEEEEeCC
Q psy17247 4 TVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~ 23 (41)
.++|||+|+...-+|+.+..
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 68999999999999999654
No 52
>PRK13326 pantothenate kinase; Reviewed
Probab=93.47 E-value=0.18 Score=29.35 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
++.+.||.|+||..++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4678999999999999998765
No 53
>PLN02669 xylulokinase
Probab=93.20 E-value=0.15 Score=32.27 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=16.7
Q ss_pred ceEEEEeCCcceEEEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~ 21 (41)
..+||||+||+..-..+++
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CeEEEEecccCCeEEEEEc
Confidence 3589999999999999984
No 54
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=92.95 E-value=0.14 Score=28.02 Aligned_cols=26 Identities=12% Similarity=0.324 Sum_probs=19.9
Q ss_pred ceEEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247 3 KTVFGLYLGNSSASIGICR--DGKVEIL 28 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~--~~~~~ii 28 (41)
+.++|||-|++++-+|+.+ ++++.++
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~~~~~~~ 29 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGRRLSYV 29 (164)
T ss_pred CEEEEEccccCceeEEEEEecCCeEEEE
Confidence 4789999999999999984 3334444
No 55
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.33 E-value=0.29 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=19.3
Q ss_pred EEEEeCCcceEEEEEEe---CCeEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR---DGKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~---~~~~~ii~ 29 (41)
++|+|+||++-++.+.+ +++++++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g 28 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIG 28 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 47999999999987762 45677774
No 56
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=92.28 E-value=0.11 Score=31.51 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.0
Q ss_pred EEEeCCcceEEEEEEe-CCe
Q psy17247 6 FGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 6 iGiD~GTtns~va~~~-~~~ 24 (41)
+|||+||++..+++++ +++
T Consensus 1 lgIDiGtt~ik~~l~d~~g~ 20 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE 20 (481)
T ss_pred CceeecCcceEEEEECCCCC
Confidence 6999999999999994 443
No 57
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=92.26 E-value=0.22 Score=32.10 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCceEEEEeCCcceEEEEEEeC
Q psy17247 1 MSKTVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~ 22 (41)
|++..||+||||..-.+++++-
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~ 22 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDC 22 (544)
T ss_pred CccEEEEEeecCCceeEEEEEc
Confidence 6789999999999999999853
No 58
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=92.13 E-value=0.27 Score=30.93 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.0
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
..++|||.|.|.+-+.++++++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4689999999999999997664
No 59
>PRK00292 glk glucokinase; Provisional
Probab=92.12 E-value=0.27 Score=28.56 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=16.8
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++|+|+|-|+..+++.+
T Consensus 3 ~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 3 PALVGDIGGTNARFALCD 20 (316)
T ss_pred eEEEEEcCccceEEEEEe
Confidence 589999999999999986
No 60
>PRK13320 pantothenate kinase; Reviewed
Probab=91.96 E-value=0.41 Score=27.52 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=19.4
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
++.+.||.|+|+.-++++++++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3689999999999999998765
No 61
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=91.79 E-value=0.34 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.4
Q ss_pred eEEEEeCCcceEEEEEEeCCe
Q psy17247 4 TVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~ 24 (41)
..+|||.|.|.+-+++.++++
T Consensus 33 ~~~GIDiGStt~K~Vlld~~~ 53 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDGE 53 (293)
T ss_pred EEEEEEeCchhEEEEEEeCCE
Confidence 579999999999999998653
No 62
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=91.62 E-value=0.72 Score=23.74 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=16.9
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
++|||++.....+++...+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999985544
No 63
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.26 E-value=0.23 Score=30.00 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCceEEEEeCCcceEEEEEEeCCe
Q psy17247 1 MSKTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~~~ 24 (41)
|.+.++|||.|..|.-+|..++..
T Consensus 1 ~~~kilGiDIGGAntk~a~~DG~~ 24 (330)
T COG1548 1 MKMKILGIDIGGANTKIASSDGDN 24 (330)
T ss_pred CCceEEEeeccCccchhhhccCCe
Confidence 678899999999999999854433
No 64
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=91.06 E-value=0.45 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEeCCcceEEEEEEeCCeE
Q psy17247 5 VFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~ 25 (41)
.+.||.|+|+..+|+++++++
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 579999999999999987654
No 65
>PRK13331 pantothenate kinase; Reviewed
Probab=90.89 E-value=0.57 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.3
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
...+.||.|+||..++++++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4588999999999999998765
No 66
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=90.78 E-value=0.87 Score=27.79 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.0
Q ss_pred eEEEEeCCcceEEEEEEe---CCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR---DGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~---~~~~~ii~ 29 (41)
.++|+|+||+.-++.+.+ +++++++.
T Consensus 9 ~i~~lDIGsskv~~vv~~~~~~~~~~i~g 37 (420)
T PRK09472 9 LVVGLEIGTAKVAALVGEVLPDGMVNIIG 37 (420)
T ss_pred EEEEEEcccceEEEEEEEEcCCCCEEEEE
Confidence 577999999999877653 56677775
No 67
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=90.64 E-value=0.42 Score=25.87 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=17.9
Q ss_pred ceEEEEeCCcceEEEEEEeCC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~ 23 (41)
+.++|+||||-.+-||+-+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 478999999999999997543
No 68
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=90.34 E-value=0.4 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.2
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..+++||||-||--|+..
T Consensus 63 G~~LalDlGGTnlRv~~V 80 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALV 80 (206)
T ss_dssp EEEEEEEESSSSEEEEEE
T ss_pred ceEEEEeecCcEEEEEEE
Confidence 458999999999999987
No 69
>PRK13317 pantothenate kinase; Provisional
Probab=90.30 E-value=0.82 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.3
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
...+|||.|.|..-+++.+++.
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCC
Confidence 4678999999999999986544
No 70
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=89.65 E-value=0.2 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=14.5
Q ss_pred EEEeCCcceEEEEEEe
Q psy17247 6 FGLYLGNSSASIGICR 21 (41)
Q Consensus 6 iGiD~GTtns~va~~~ 21 (41)
+|||+|||++-++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999984
No 71
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=89.46 E-value=0.77 Score=29.24 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=13.9
Q ss_pred eEEEEeCCcceEEEEEE
Q psy17247 4 TVFGLYLGNSSASIGIC 20 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~ 20 (41)
..+|||+|||.+.+-+-
T Consensus 4 ~SVGIDIGTSTTQlvfS 20 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFS 20 (473)
T ss_pred EEEEEeecCCceeEEEE
Confidence 35899999999988653
No 72
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=89.39 E-value=0.9 Score=28.95 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=13.5
Q ss_pred EEEEeCCcceEEEEEE
Q psy17247 5 VFGLYLGNSSASIGIC 20 (41)
Q Consensus 5 ~iGiD~GTtns~va~~ 20 (41)
.+|||+|||.+.+-+-
T Consensus 8 SVGIDIGTsTTqlvfS 23 (475)
T PRK10719 8 SVGIDIGTTTTQVIFS 23 (475)
T ss_pred EEEEeccCceEEEEEE
Confidence 5799999999998653
No 73
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=89.13 E-value=1.2 Score=26.24 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=16.4
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
..+|||.|.|.+-+.+.+
T Consensus 2 ~~~GIDiGStttK~Vlid 19 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFE 19 (262)
T ss_pred eEEEEEcCcccEEEEEEe
Confidence 468999999999999997
No 74
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.95 E-value=0.77 Score=27.10 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.9
Q ss_pred ceEEEEeCCcceEEEEEE-eCCeE
Q psy17247 3 KTVFGLYLGNSSASIGIC-RDGKV 25 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~-~~~~~ 25 (41)
+..+|.||||.+-+.-+. +++++
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~P 52 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQP 52 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCe
Confidence 457899999999887777 45554
No 75
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=88.69 E-value=1.8 Score=23.49 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR--DGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~--~~~~~ii~ 29 (41)
.+++||.|+-|.+..+.+ ++.++++.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~~~~ 29 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIRVID 29 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEEEEE
Confidence 689999999999999985 45566554
No 76
>PRK13324 pantothenate kinase; Reviewed
Probab=88.34 E-value=1 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.7
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
.+.||.|+||..++++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68899999999999998654
No 77
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=88.31 E-value=1.1 Score=25.81 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.1
Q ss_pred EEEeCCcceEEEEEEeCCe
Q psy17247 6 FGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 6 iGiD~GTtns~va~~~~~~ 24 (41)
+.||.|+||..+|++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998775
No 78
>KOG2517|consensus
Probab=88.27 E-value=0.78 Score=29.48 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.9
Q ss_pred ceEEEEeCCcceEEEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~ 21 (41)
..++|||.|||.+..++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 4578999999999999986
No 79
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=87.60 E-value=1.4 Score=26.22 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEeCCcceEEEEEEe--C-CeEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR--D-GKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~--~-~~~~ii~ 29 (41)
++|||+||++-++.+.+ + ++++++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~ 29 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIG 29 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEE
Confidence 57999999999988763 3 4477664
No 80
>PF13941 MutL: MutL protein
Probab=86.98 E-value=1.3 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR--DGKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~--~~~~~ii~ 29 (41)
++-+|||.|+.-+..++ .++.+++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig 28 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG 28 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE
Confidence 57899999999999998 77888775
No 81
>PRK09698 D-allose kinase; Provisional
Probab=86.84 E-value=1.5 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=19.9
Q ss_pred CCceEEEEeCCcceEEEEEEe-CCe
Q psy17247 1 MSKTVFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~-~~~ 24 (41)
|...++|||+|-|+..+++.+ +++
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~g~ 26 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAEGE 26 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCCCC
Confidence 567899999999999999985 443
No 82
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=86.59 E-value=0.67 Score=24.40 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.9
Q ss_pred EEEeCCcceEEEEEEeC
Q psy17247 6 FGLYLGNSSASIGICRD 22 (41)
Q Consensus 6 iGiD~GTtns~va~~~~ 22 (41)
+|||+|+..+-+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998754
No 83
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=86.54 E-value=1.4 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.2
Q ss_pred CceEEEEeCCcce-----EEEEEEeCCeE
Q psy17247 2 SKTVFGLYLGNSS-----ASIGICRDGKV 25 (41)
Q Consensus 2 ~~~~iGiD~GTtn-----s~va~~~~~~~ 25 (41)
++.++.|||-|++ .-.|++++++.
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCeE
Confidence 3578999999999 99999987764
No 84
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.51 E-value=1.3 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCceEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 1 MSKTVFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~~~~~ii 28 (41)
|....+|||-|||--..+++++.+...+
T Consensus 1 ~~m~fVGiDHGTsgi~~ai~d~e~~~~F 28 (332)
T COG4020 1 MTMMFVGIDHGTSGIKFAIYDGEKDPEF 28 (332)
T ss_pred CceEEEeecCCCcceEEEEEcCCCCceE
Confidence 5678999999999999999974443333
No 85
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=86.08 E-value=0.67 Score=29.70 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.3
Q ss_pred ceEEEEeCCcceEEEEEE-eCCe
Q psy17247 3 KTVFGLYLGNSSASIGIC-RDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~-~~~~ 24 (41)
+.++.||-|||+|-..++ ++++
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~ 27 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGN 27 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCC
Confidence 578999999999999998 4443
No 86
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=85.90 E-value=0.93 Score=26.76 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=18.0
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..+.||+|+.++.+++..+..+.
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~ 24 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQ 24 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCc
Confidence 46899999999999987554443
No 87
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=85.77 E-value=1.1 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.4
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.+||+|+||+..-+|+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~ 19 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVE 19 (805)
T ss_pred ceeEEeecccceeEEEEe
Confidence 578999999999999985
No 88
>PLN02914 hexokinase
Probab=85.68 E-value=0.93 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=16.1
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
...+.+|||-||.-|+..
T Consensus 95 G~fLAlDlGGTNfRV~~V 112 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRV 112 (490)
T ss_pred eEEEEEecCCceEEEEEE
Confidence 358999999999999987
No 89
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=85.68 E-value=1.5 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.3
Q ss_pred CceEEEEeCCcceEEEEEEe
Q psy17247 2 SKTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 2 ~~~~iGiD~GTtns~va~~~ 21 (41)
...++|||+||+.-++-+.+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~ 42 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLD 42 (267)
T ss_pred CCEEEEEEccCceEEEEEEc
Confidence 35688999999999987763
No 90
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=85.67 E-value=2.2 Score=23.61 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=16.9
Q ss_pred EEEEeCCcceEEEEEEeCCeE
Q psy17247 5 VFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~ 25 (41)
++-||.|+|+.-++++++++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 467999999999999987753
No 91
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=85.46 E-value=1.4 Score=27.49 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.8
Q ss_pred eEEEEeCCcceEEEEEEeCC
Q psy17247 4 TVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~ 23 (41)
..+|||.|.|.+-+.+.+++
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred EEEEEEcChhheeeEEEcCC
Confidence 57999999999999998765
No 92
>PLN02362 hexokinase
Probab=85.24 E-value=1.5 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.2
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..++.+|||-||--|+..
T Consensus 95 G~fLAlDlGGTNfRV~~V 112 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRV 112 (509)
T ss_pred eeEEEEecCCceEEEEEE
Confidence 358999999999999987
No 93
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=84.21 E-value=1 Score=28.89 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=16.6
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
+++|+|+|-||..+|+++
T Consensus 19 ~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 19 PRLLADVGGTNARFALET 36 (638)
T ss_pred CEEEEEcCchhheeeeec
Confidence 589999999999999994
No 94
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=84.14 E-value=3.7 Score=23.96 Aligned_cols=26 Identities=12% Similarity=0.353 Sum_probs=20.0
Q ss_pred ceEEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247 3 KTVFGLYLGNSSASIGICR--DGKVEIL 28 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~--~~~~~ii 28 (41)
..++|||+|++.-.++... +++.++.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~ 30 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLE 30 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEE
Confidence 4589999999999998874 5555543
No 95
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=84.13 E-value=2.7 Score=26.38 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEEeCCcceEEEEEEeCCe
Q psy17247 4 TVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~ 24 (41)
..+|||.|.|..-+.+.+++.
T Consensus 136 ~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 136 YTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred EEEEEecCCcceeEEEEeCCC
Confidence 589999999999999998776
No 96
>PRK12408 glucokinase; Provisional
Probab=84.04 E-value=1.1 Score=26.62 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=16.4
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.++++|+|-||...++++
T Consensus 17 ~~L~~DIGGT~i~~al~d 34 (336)
T PRK12408 17 SFVAADVGGTHVRVALVC 34 (336)
T ss_pred cEEEEEcChhhhheeEEe
Confidence 379999999999999995
No 97
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=83.74 E-value=3.8 Score=25.68 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEeCCcceEEEEEE--eCC-eEEEEe
Q psy17247 4 TVFGLYLGNSSASIGIC--RDG-KVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~--~~~-~~~ii~ 29 (41)
.++|+|+||+.-++-+. .++ +.+++-
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig 35 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG 35 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe
Confidence 58899999999888775 344 677775
No 98
>PF01385 OrfB_IS605: Probable transposase; InterPro: IPR001959 This entry represents a conserved region of a probable transposase family, which is found in a number of uncharacterised bacterial proteins. A novel insertion sequence (IS)-like element of the Bacillus PS3 (Thermophilic bacterium PS-3) that promotes expression of the alanine carrier protein-encoding gene belongs to this entry, including IS891 [], IS1136 [], and IS1341 []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=83.09 E-value=1 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=16.6
Q ss_pred ceEEEEeCCcceEEEEEEeCC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~ 23 (41)
..++|||+|-.+.+++.-.++
T Consensus 124 ~~~vgVDlGi~~~a~~~~~~~ 144 (227)
T PF01385_consen 124 EKVVGVDLGIKNLATVSSGDG 144 (227)
T ss_pred ceeeeeccccceeeccccccc
Confidence 468999999999987765443
No 99
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=82.34 E-value=2.3 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEEeCCcce-EEEEEEeCCeEEEEeC
Q psy17247 4 TVFGLYLGNSS-ASIGICRDGKVEILAN 30 (41)
Q Consensus 4 ~~iGiD~GTtn-s~va~~~~~~~~ii~~ 30 (41)
...|||+|--. +++|++.+++.+++..
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~ 29 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISA 29 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEc
Confidence 57899997544 4899999999999874
No 100
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=82.06 E-value=2.4 Score=23.99 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=17.0
Q ss_pred EEEEeCCcceEEEEEEe-CCe
Q psy17247 5 VFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~-~~~ 24 (41)
++|||+|.|+..+++.+ +++
T Consensus 2 ~lgidiggt~i~~~l~d~~g~ 22 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ 22 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 69999999999999984 443
No 101
>PTZ00288 glucokinase 1; Provisional
Probab=81.15 E-value=2.3 Score=26.38 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.8
Q ss_pred eEEEEeCCcceEEEEEEeC
Q psy17247 4 TVFGLYLGNSSASIGICRD 22 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~ 22 (41)
.++|+|.|-||+.+++++.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 4789999999999999854
No 102
>PLN02405 hexokinase
Probab=81.02 E-value=1.8 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=16.0
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..++.+|||-||--|...
T Consensus 95 G~flAlDlGGTNfRV~~V 112 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRV 112 (497)
T ss_pred eeEEEEecCCceEEEEEE
Confidence 358999999999999987
No 103
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=80.51 E-value=1.7 Score=25.64 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=18.7
Q ss_pred EEEEeCCcceEEEEEEeCCe-EEEEeC
Q psy17247 5 VFGLYLGNSSASIGICRDGK-VEILAN 30 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~-~~ii~~ 30 (41)
.+.||+|+.+..+++..+.. .-++++
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps 27 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPS 27 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeec
Confidence 37899999999999885543 334443
No 104
>PLN02596 hexokinase-like
Probab=80.28 E-value=2.1 Score=27.31 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=16.0
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
...+.+|||-||--|+..
T Consensus 96 G~yLAlDlGGTNfRV~~V 113 (490)
T PLN02596 96 GLYYGLNLRGSNFLLLRA 113 (490)
T ss_pred eEEEEEeeCCceEEEEEE
Confidence 357999999999999987
No 105
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=79.99 E-value=5.3 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=19.0
Q ss_pred CceEEEEeCCcceEEEEEEe-CCe
Q psy17247 2 SKTVFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 2 ~~~~iGiD~GTtns~va~~~-~~~ 24 (41)
+..++|||+|-|+..+++.+ +++
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~ 28 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGE 28 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCc
Confidence 45789999999999999984 343
No 106
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=79.96 E-value=4.6 Score=22.92 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.8
Q ss_pred EEEeCCcceEEEEEEeCC
Q psy17247 6 FGLYLGNSSASIGICRDG 23 (41)
Q Consensus 6 iGiD~GTtns~va~~~~~ 23 (41)
+|||-|.|.+.+.+.+.+
T Consensus 1 lGIDgGgTkt~~vl~d~~ 18 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN 18 (271)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred CEEeeChheeeeEEEeCC
Confidence 799999999999998654
No 107
>PRK00976 hypothetical protein; Provisional
Probab=77.93 E-value=6 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~ 29 (41)
.++|||=|||--..++..++...+++
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~~~~f~ 27 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGKKSIFK 27 (326)
T ss_pred eEEeecCCCccEEEEEEcCCceeEEE
Confidence 68999999999999988666555554
No 108
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=77.64 E-value=4.5 Score=24.51 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.7
Q ss_pred CCceEEEEeCCcceEEEEEEe
Q psy17247 1 MSKTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~ 21 (41)
|+..++|||=|-|.|...+.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~ 23 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLAD 23 (301)
T ss_pred CccEEEEEccCCcceEEEEEc
Confidence 456799999888888777775
No 109
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=77.33 E-value=4.5 Score=25.28 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=14.8
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
.-+.+|+|||.-+.++++
T Consensus 2 ~GiAvDiGTTti~~~L~d 19 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVD 19 (412)
T ss_dssp EEEEEEE-SSEEEEEEEE
T ss_pred EEEEEEcchhheeeEEEE
Confidence 458899999999999985
No 110
>PRK09557 fructokinase; Reviewed
Probab=77.19 E-value=4.2 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.0
Q ss_pred EEEEeCCcceEEEEEEe-CCe
Q psy17247 5 VFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~-~~~ 24 (41)
.+|+|+|.|+..+++++ +++
T Consensus 2 ~lgidig~t~~~~~l~d~~g~ 22 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE 22 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC
Confidence 68999999999999985 443
No 111
>PTZ00107 hexokinase; Provisional
Probab=77.19 E-value=2.6 Score=26.58 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=16.1
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..++.||||-||--|+..
T Consensus 74 G~fLAlDlGGTN~RV~~V 91 (464)
T PTZ00107 74 GVYYAIDFGGTNFRAVRV 91 (464)
T ss_pred ceEEEEecCCceEEEEEE
Confidence 358999999999999987
No 112
>PRK13322 pantothenate kinase; Reviewed
Probab=76.52 E-value=4.2 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.5
Q ss_pred EEEEeCCcceEEEEEEeC
Q psy17247 5 VFGLYLGNSSASIGICRD 22 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~ 22 (41)
.+-||.|+|+..++++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 688999999999999975
No 113
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=75.71 E-value=3.8 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.9
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..++.||||.||--++..
T Consensus 75 g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred CCEEEEecCCceEEEEEE
Confidence 468999999999999876
No 114
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=74.90 E-value=5.4 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.640 Sum_probs=15.7
Q ss_pred EEEEeCCcceEEEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR 21 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~ 21 (41)
++|||+|.|+..+++.+
T Consensus 2 ~lgidig~t~i~~~l~d 18 (303)
T PRK13310 2 YYGFDIGGTKIELGVFN 18 (303)
T ss_pred eEEEEeCCCcEEEEEEC
Confidence 68999999999999985
No 115
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=74.89 E-value=2 Score=27.11 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=10.1
Q ss_pred ceEEEEeCCcce
Q psy17247 3 KTVFGLYLGNSS 14 (41)
Q Consensus 3 ~~~iGiD~GTtn 14 (41)
.+.+.||||||-
T Consensus 193 NPciSiDFGTTL 204 (445)
T TIGR03285 193 NPCISIDFGTTL 204 (445)
T ss_pred CceEEeeccccc
Confidence 578999999984
No 116
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=74.00 E-value=8.5 Score=23.05 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.3
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
+.++|||+|..|.-.+.-
T Consensus 2 ~~v~~iDiG~g~tK~~~~ 19 (344)
T PRK13917 2 VYVMALDFGNGFVKGKIN 19 (344)
T ss_pred ceEEEEeccCCeEEEEec
Confidence 478999999999988764
No 117
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=72.95 E-value=2.3 Score=26.89 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=10.0
Q ss_pred ceEEEEeCCcce
Q psy17247 3 KTVFGLYLGNSS 14 (41)
Q Consensus 3 ~~~iGiD~GTtn 14 (41)
.+.+.||||||-
T Consensus 196 NPciSiDFGTTL 207 (448)
T PF09887_consen 196 NPCISIDFGTTL 207 (448)
T ss_pred CceeEeeccccc
Confidence 578899999984
No 118
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=70.80 E-value=3 Score=26.30 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.7
Q ss_pred EEEEeCCcceEEEEE
Q psy17247 5 VFGLYLGNSSASIGI 19 (41)
Q Consensus 5 ~iGiD~GTtns~va~ 19 (41)
.+|||+|||...|-.
T Consensus 7 SVGIDiGTsTTQvif 21 (473)
T COG4819 7 SVGIDIGTSTTQVIF 21 (473)
T ss_pred eeeeeccCceeeeee
Confidence 569999999998854
No 119
>PTZ00466 actin-like protein; Provisional
Probab=69.96 E-value=6.1 Score=23.94 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=20.2
Q ss_pred CCceEEEEeCCcceEEEEEEeCCeEE
Q psy17247 1 MSKTVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~~~~~ 26 (41)
|+...|-||+|+.+.-++...+..|.
T Consensus 10 ~~~~~iViD~GS~~~K~G~ag~~~P~ 35 (380)
T PTZ00466 10 YSNQPIIIDNGTGYIKAGFAGEDVPN 35 (380)
T ss_pred ccCCeEEEECCCCcEEEeeCCCCCCC
Confidence 45567999999999999988554554
No 120
>PTZ00452 actin; Provisional
Probab=69.96 E-value=6.8 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=19.4
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEE
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ 26 (41)
...+-||+|+.++-+++.-+..|.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~ 28 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPT 28 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcC
Confidence 467899999999999998555554
No 121
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=69.82 E-value=16 Score=19.99 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=15.2
Q ss_pred EEEeCCcceEEEEEEeCC
Q psy17247 6 FGLYLGNSSASIGICRDG 23 (41)
Q Consensus 6 iGiD~GTtns~va~~~~~ 23 (41)
||||.|-||.=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999988877554
No 122
>KOG2912|consensus
Probab=69.65 E-value=1.8 Score=27.00 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=11.6
Q ss_pred EEeCCcceEEEEE
Q psy17247 7 GLYLGNSSASIGI 19 (41)
Q Consensus 7 GiD~GTtns~va~ 19 (41)
|||.||+-||+.-
T Consensus 106 GiDIgtgasci~~ 118 (419)
T KOG2912|consen 106 GIDIGTGASCIYP 118 (419)
T ss_pred eeeccCchhhhHH
Confidence 9999999999853
No 123
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=68.95 E-value=9.8 Score=21.75 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=17.7
Q ss_pred eEEEEeCCcceEEEEEEe-CCe
Q psy17247 4 TVFGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~-~~~ 24 (41)
.++|+|+|.++..+++.+ +++
T Consensus 2 ~~lgvdig~~~i~~~l~dl~g~ 23 (291)
T PRK05082 2 TTLAIDIGGTKIAAALVGEDGQ 23 (291)
T ss_pred cEEEEEECCCEEEEEEEcCCCc
Confidence 589999999999999985 443
No 124
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.84 E-value=9.7 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=23.0
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEEe
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii~ 29 (41)
+|++|.|-|.+=++.+.+|.+++..
T Consensus 280 ~i~~DmGGTStDva~i~~G~pe~~~ 304 (674)
T COG0145 280 AIVFDMGGTSTDVALIIDGEPEISS 304 (674)
T ss_pred EEEEEcCCcceeeeeeecCcEEeec
Confidence 7999999999999999999998765
No 125
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=67.82 E-value=13 Score=22.05 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=20.7
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEE
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..++.+|+|+.....+..+++++.
T Consensus 167 ~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred CCeEEEEeCCccEEEEEEeCCEEE
Confidence 358899999999999999888764
No 126
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=67.22 E-value=13 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=18.5
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~ 29 (41)
..|.+|.|-|.+=|++..+|++++-.
T Consensus 78 ~~i~vDmGGTTtDi~~i~~G~p~~~~ 103 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKDGRPEISS 103 (290)
T ss_dssp SEEEEEE-SS-EEEEEEETTEE----
T ss_pred CEEEEeCCCCEEEEEEEECCeeeccc
Confidence 47899999999999999999987443
No 127
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=66.20 E-value=18 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=18.8
Q ss_pred EEEEeCCcceEEEEEE-eCCeEEEE
Q psy17247 5 VFGLYLGNSSASIGIC-RDGKVEIL 28 (41)
Q Consensus 5 ~iGiD~GTtns~va~~-~~~~~~ii 28 (41)
.+|||.|.|-.-+++. ++++....
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEE
Confidence 6899999999999988 55554433
No 128
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=66.15 E-value=21 Score=21.84 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=17.8
Q ss_pred ceEEEEeCCcceEEEEEEeCC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~ 23 (41)
..+|-||-||||--+=++++.
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred ceEEEEecCCccEEEEEEcCC
Confidence 468899999999999888554
No 129
>PTZ00280 Actin-related protein 3; Provisional
Probab=66.11 E-value=7.7 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=18.2
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..|.||+|+.++-+++..+..|.
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~ 27 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPT 27 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCC
Confidence 57999999999999988444444
No 130
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=64.79 E-value=5.4 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEeCCcceEEEEEEe--CCeEEEE
Q psy17247 5 VFGLYLGNSSASIGICR--DGKVEIL 28 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~--~~~~~ii 28 (41)
++|||=|+..+-+|+.+ +++...+
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~~~~~v 26 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGRQLSYL 26 (156)
T ss_pred CEeECcccccccEEEEEecCCeEEEE
Confidence 58999999999999984 4455544
No 131
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=63.28 E-value=17 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii 28 (41)
..|-+|.|.|..=|+...+|++.+-
T Consensus 129 ~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CEEEEEcCccceeeEEecCCEeeee
Confidence 4789999999999999999988765
No 132
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=62.13 E-value=22 Score=21.02 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=16.2
Q ss_pred EEEEeCCcceEEEEEEeCCeE
Q psy17247 5 VFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~ 25 (41)
.|+||-|.+|--++.+++|+.
T Consensus 2 ~i~iDdG~~~~K~~~~~~~~~ 22 (318)
T PF06406_consen 2 KIAIDDGSTNVKLAWYEDGKI 22 (318)
T ss_dssp EEEEEE-SSEEEEEEE-SS-E
T ss_pred eEEEecCCCceeEEEecCCeE
Confidence 589999999999999988854
No 133
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=61.30 E-value=32 Score=20.34 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.3
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEILA 29 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii~ 29 (41)
.++-+|+|...+.+.++++|++....
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R 206 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSR 206 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEE
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEE
Confidence 46789999999999999999876554
No 134
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=58.36 E-value=11 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.6
Q ss_pred EEEeCCcceEEEEEEeC
Q psy17247 6 FGLYLGNSSASIGICRD 22 (41)
Q Consensus 6 iGiD~GTtns~va~~~~ 22 (41)
+.+|+|-||..++++++
T Consensus 1 l~~DIGGT~i~~glvd~ 17 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI 17 (316)
T ss_pred CeEecCcceeeEEEEec
Confidence 46899999999999853
No 135
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.31 E-value=39 Score=22.59 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=19.9
Q ss_pred ceEEEEeCCcceEEEEEEeCC--eEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGICRDG--KVEILA 29 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~--~~~ii~ 29 (41)
+..+|||-|-|+.=+.+++++ .....+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K 30 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIK 30 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEE
Confidence 468999999999988888554 444443
No 136
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=56.63 E-value=9.9 Score=22.61 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.9
Q ss_pred CCceEEEEeCCcceE
Q psy17247 1 MSKTVFGLYLGNSSA 15 (41)
Q Consensus 1 m~~~~iGiD~GTtns 15 (41)
|.+.++-+.||||+-
T Consensus 1 mKKailiVsFGTty~ 15 (265)
T COG4822 1 MKKAILIVSFGTTYN 15 (265)
T ss_pred CCceEEEEEcCCccc
Confidence 667788889999873
No 137
>PTZ00004 actin-2; Provisional
Probab=56.10 E-value=14 Score=22.17 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.2
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..+-||+|+.+.-+++..+..|.
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~ 29 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPR 29 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCC
Confidence 46899999999999988554443
No 138
>PF12565 DUF3747: Protein of unknown function (DUF3747); InterPro: IPR022222 This family of proteins is found in bacteria. Proteins in this family are typically between 215 and 413 amino acids in length. There is a conserved DSNGYS sequence motif.
Probab=56.04 E-value=36 Score=19.35 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=21.9
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEEeCCC
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEILANEA 32 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii~~~~ 32 (41)
+-|-|||+.+..--+-+++...++....
T Consensus 102 ~~G~Dlg~~YrLrlv~~~~el~L~a~~~ 129 (181)
T PF12565_consen 102 IGGQDLGLRYRLRLVQRNGELVLVATPR 129 (181)
T ss_pred ECCeecCceEEEEEEEECCEEEEEecCC
Confidence 4489999999887777888888877543
No 139
>PF14239 RRXRR: RRXRR protein
Probab=55.93 E-value=33 Score=19.31 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.9
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
...+|||=|..++-+|+..+++
T Consensus 51 pi~lgiDpGsk~tGiav~~~~~ 72 (176)
T PF14239_consen 51 PIRLGIDPGSKTTGIAVVSEKK 72 (176)
T ss_pred CEEEEECCCCCeEEEEEEeCCE
Confidence 4578999999999999987764
No 140
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=55.46 E-value=6.4 Score=21.92 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=14.5
Q ss_pred EEEeCCcceEEEEEEe
Q psy17247 6 FGLYLGNSSASIGICR 21 (41)
Q Consensus 6 iGiD~GTtns~va~~~ 21 (41)
+|||=|...+-.++.+
T Consensus 1 lGIDPGl~~~G~gvI~ 16 (160)
T COG0817 1 LGIDPGLRRTGYGVIE 16 (160)
T ss_pred CCcCCCccccceEEEE
Confidence 5899999999999984
No 141
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=55.24 E-value=1.6 Score=28.13 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=18.9
Q ss_pred EeCCcceEEEEEEeCCeEEEEeCC
Q psy17247 8 LYLGNSSASIGICRDGKVEILANE 31 (41)
Q Consensus 8 iD~GTtns~va~~~~~~~~ii~~~ 31 (41)
=||||-||.+.+..+=.++.++-|
T Consensus 420 DDFGTGYSnL~YLq~L~VDaLKID 443 (524)
T COG4943 420 DDFGTGYSNLHYLQSLPVDALKID 443 (524)
T ss_pred ccCcCcchhHHHHhhCCccceecc
Confidence 389999999998877667777644
No 142
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=55.04 E-value=34 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=17.2
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii 28 (41)
.++|||=|||--..++--+|++-.+
T Consensus 33 lIVGiDPG~ttgiAildL~G~~l~l 57 (138)
T PF04312_consen 33 LIVGIDPGTTTGIAILDLDGELLDL 57 (138)
T ss_pred EEEEECCCceeEEEEEecCCcEEEE
Confidence 4789999998765555556665433
No 143
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=54.56 E-value=16 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.719 Sum_probs=15.8
Q ss_pred EEEeCCcceEEEEEEe-CCe
Q psy17247 6 FGLYLGNSSASIGICR-DGK 24 (41)
Q Consensus 6 iGiD~GTtns~va~~~-~~~ 24 (41)
+|||+|.|+..+++.+ +++
T Consensus 1 lgidig~t~~~~~l~d~~g~ 20 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN 20 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC
Confidence 5999999999999985 443
No 144
>KOG1369|consensus
Probab=53.67 E-value=21 Score=22.93 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.9
Q ss_pred ceEEEEeCCcceEEEEEE
Q psy17247 3 KTVFGLYLGNSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~ 20 (41)
..++.+|||.||--|...
T Consensus 86 G~~lalDLGGTn~Rv~~v 103 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLV 103 (474)
T ss_pred CCEEEEecCCCceEEEEE
Confidence 458999999999999876
No 145
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=52.99 E-value=17 Score=22.41 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=16.9
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
++|||=|||--..|+..++.
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~ 20 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEK 20 (326)
T ss_pred CccccCCCccEEEEEecCCc
Confidence 47999999999999886554
No 146
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=49.03 E-value=11 Score=24.10 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=12.6
Q ss_pred EeCCcceEEEEEEe
Q psy17247 8 LYLGNSSASIGICR 21 (41)
Q Consensus 8 iD~GTtns~va~~~ 21 (41)
+|||.|+..+..++
T Consensus 1 ~DiGST~Tk~~a~~ 14 (463)
T TIGR01319 1 LDFGSTWTKAAAFD 14 (463)
T ss_pred CCccccceEEEEEe
Confidence 59999999999984
No 147
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=48.16 E-value=35 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.8
Q ss_pred ceEEEEeCCcceEEEEEEeCCe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~ 24 (41)
.+.+-||.|+|..-++++++++
T Consensus 338 ~~~LliD~GNTriKwa~~~~~~ 359 (592)
T PRK13325 338 ERFLLLDGGNSRLKWAWVENGT 359 (592)
T ss_pred ceEEEEEcCcCceeEEEEcCCc
Confidence 4688999999999999987654
No 148
>COG4065 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.01 E-value=11 Score=23.76 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=9.2
Q ss_pred ceEEEEeCCcce
Q psy17247 3 KTVFGLYLGNSS 14 (41)
Q Consensus 3 ~~~iGiD~GTtn 14 (41)
.+-+.||||||-
T Consensus 226 NPC~siDfGTTL 237 (480)
T COG4065 226 NPCMSIDFGTTL 237 (480)
T ss_pred CCceEeecccee
Confidence 456789999984
No 149
>PRK13329 pantothenate kinase; Reviewed
Probab=47.21 E-value=24 Score=20.46 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.3
Q ss_pred eEEEEeCCcceEEEEEEe
Q psy17247 4 TVFGLYLGNSSASIGICR 21 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~ 21 (41)
+.+-||.|+|..-+++++
T Consensus 2 m~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 2 TFLAIDVGNTRLKWGLYD 19 (249)
T ss_pred CEEEEEcCcchheeeEec
Confidence 478899999999999997
No 150
>PTZ00281 actin; Provisional
Probab=46.59 E-value=27 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.2
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..+-||+|+.+.-+++..+..|.
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~ 29 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPR 29 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCC
Confidence 46889999999999998554444
No 151
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=45.79 E-value=28 Score=24.45 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.4
Q ss_pred ceEEEEeCCcceEEEEEEeCC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~ 23 (41)
..+||+|+|+..--+|+..+.
T Consensus 4 ~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 4 AYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred ceEEEeeccccceeeEEeecc
Confidence 468899999999999988543
No 152
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=45.42 E-value=44 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=16.5
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
+++||=-+..++||++++++
T Consensus 1 iLaidTs~~~~sval~~~~~ 20 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDDGE 20 (202)
T ss_pred CEEEECCCcceEEEEEECCE
Confidence 46889888899999998765
No 153
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.95 E-value=56 Score=20.16 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=20.6
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii 28 (41)
+.+-+|+|+.....|++.++++.-+
T Consensus 228 palvVd~GngHttaalvdedRI~gv 252 (342)
T COG4012 228 PALVVDYGNGHTTAALVDEDRIVGV 252 (342)
T ss_pred ceEEEEccCCceEEEEecCCeEEEE
Confidence 5788999999999999977766533
No 154
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=44.64 E-value=1 Score=25.77 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.5
Q ss_pred eCCcceEEEEEEeCCeEEEEeC
Q psy17247 9 YLGNSSASIGICRDGKVEILAN 30 (41)
Q Consensus 9 D~GTtns~va~~~~~~~~ii~~ 30 (41)
||||.+|.......=.+++++-
T Consensus 156 DFGtG~ssl~~L~~l~~d~iKI 177 (256)
T COG2200 156 DFGTGYSSLSYLKRLPPDILKI 177 (256)
T ss_pred CCCCCHHHHHHHhhCCCCeEEE
Confidence 7999999988776655666653
No 155
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=44.61 E-value=18 Score=21.43 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=19.9
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEE-EEe
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVE-ILA 29 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~-ii~ 29 (41)
...+-||+|+.+.-+++..+..|. +++
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v~p 31 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVVIP 31 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEEEE
T ss_pred CCEEEEECCCceEEEEECCCCCCCCcCC
Confidence 457899999999999998555554 344
No 156
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=42.67 E-value=19 Score=19.61 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=8.0
Q ss_pred eEEEEeCCcc
Q psy17247 4 TVFGLYLGNS 13 (41)
Q Consensus 4 ~~iGiD~GTt 13 (41)
..+||||+-+
T Consensus 134 ~~lgIDF~DS 143 (145)
T PF14796_consen 134 VSLGIDFNDS 143 (145)
T ss_pred EEEEEecccC
Confidence 4789999865
No 157
>KOG0681|consensus
Probab=42.52 E-value=19 Score=24.03 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=18.2
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..|-||+|+..|-++......|+
T Consensus 24 ~piVIDNGS~~~RaGw~ge~eP~ 46 (645)
T KOG0681|consen 24 IPIVIDNGSYECRAGWAGEKEPR 46 (645)
T ss_pred CcEEEeCCceeEeecccCCCCcc
Confidence 47899999999999988544444
No 158
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=42.32 E-value=53 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=16.8
Q ss_pred EEEEeCCcceEEEEEEeCCe
Q psy17247 5 VFGLYLGNSSASIGICRDGK 24 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~ 24 (41)
+++||=-+..+++|++++++
T Consensus 1 iLaIdTs~~~~sval~~~~~ 20 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGK 20 (314)
T ss_pred CEEEECcccceEEEEEECCc
Confidence 47999889999999997654
No 159
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=41.40 E-value=4.9 Score=24.20 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=10.0
Q ss_pred eEEEEeCCcceEEE
Q psy17247 4 TVFGLYLGNSSASI 17 (41)
Q Consensus 4 ~~iGiD~GTtns~v 17 (41)
.+.|||.||-.|||
T Consensus 103 ~v~glDIGTGAscI 116 (299)
T PF05971_consen 103 KVRGLDIGTGASCI 116 (299)
T ss_dssp --EEEEES-TTTTH
T ss_pred ceEeecCCccHHHH
Confidence 47799999999887
No 160
>PHA02942 putative transposase; Provisional
Probab=41.15 E-value=32 Score=21.19 Aligned_cols=14 Identities=0% Similarity=0.057 Sum_probs=11.1
Q ss_pred eEEEEeCCcceEEE
Q psy17247 4 TVFGLYLGNSSASI 17 (41)
Q Consensus 4 ~~iGiD~GTtns~v 17 (41)
.++|||+|-.+-++
T Consensus 178 ~~vGVDlGl~~~a~ 191 (383)
T PHA02942 178 DSVAVDINMNDIVV 191 (383)
T ss_pred CEEEEEcCcceEEE
Confidence 48999999876554
No 161
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=40.33 E-value=31 Score=18.06 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=13.7
Q ss_pred EEeCCcceEEEEEEe
Q psy17247 7 GLYLGNSSASIGICR 21 (41)
Q Consensus 7 GiD~GTtns~va~~~ 21 (41)
|||+|.++..+++.+
T Consensus 1 gidig~~~i~~~l~d 15 (179)
T PF00480_consen 1 GIDIGGTSIRIALVD 15 (179)
T ss_dssp EEEEESSEEEEEEEE
T ss_pred CEEECCCEEEEEEEC
Confidence 799999999999985
No 162
>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1VAV_B 1UAI_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A 2ZAA_A 2ZA9_A 2CWS_A.
Probab=39.41 E-value=68 Score=18.26 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=20.2
Q ss_pred EEeCCcceEEEEEEeCCeEEEEeCCCCC
Q psy17247 7 GLYLGNSSASIGICRDGKVEILANEAGD 34 (41)
Q Consensus 7 GiD~GTtns~va~~~~~~~~ii~~~~~~ 34 (41)
+|+||+..+.--...++.+.|.-+.++.
T Consensus 160 ~i~LG~~F~y~I~v~~~~l~V~ing~~~ 187 (236)
T PF08787_consen 160 GIPLGEWFSYEIEVSGGTLTVTINGEGK 187 (236)
T ss_dssp EEETT-EEEEEEEEETTEEEEEETTEEE
T ss_pred ceeCCCEEEEEEEEECCEEEEEEECCcc
Confidence 7999988888777778877777665443
No 163
>PRK03011 butyrate kinase; Provisional
Probab=39.33 E-value=73 Score=19.50 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.5
Q ss_pred ceEEEEeCCcceEEEEEEeCCeE
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKV 25 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~ 25 (41)
..++-|.-|.|.+-+|++++.+.
T Consensus 2 ~~il~inpgststk~a~~~~~~~ 24 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKP 24 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCce
Confidence 35889999999999999976653
No 164
>KOG0086|consensus
Probab=39.14 E-value=17 Score=20.70 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=16.1
Q ss_pred CceEEEEeCCcceEEEEEEeCCeEEEEeC
Q psy17247 2 SKTVFGLYLGNSSASIGICRDGKVEILAN 30 (41)
Q Consensus 2 ~~~~iGiD~GTtns~va~~~~~~~~ii~~ 30 (41)
+++.||+|||.---.|+. +.=+.+|+..
T Consensus 38 ssHTiGveFgSrIinVGg-K~vKLQIWDT 65 (214)
T KOG0086|consen 38 SSHTIGVEFGSRIVNVGG-KTVKLQIWDT 65 (214)
T ss_pred ccceeeeeecceeeeecC-cEEEEEEeec
Confidence 467899999975444432 1113455553
No 165
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=39.07 E-value=58 Score=18.48 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEeCCcceEEEEEEeCCeEEE
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEI 27 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~i 27 (41)
.+-+|+|...+-++++++|++..
T Consensus 110 ~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 110 GAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred cEEEEeCCCcEEEEEEECCeEEE
Confidence 36789999999999998887554
No 166
>KOG2111|consensus
Probab=39.02 E-value=97 Score=19.39 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.3
Q ss_pred eEEEEeCCcc-eEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNS-SASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTt-ns~va~~~~~~~~ 26 (41)
...-+.||.- |+.++++.||...
T Consensus 294 ~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 294 TQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred CcEEEEecCCCCeEEEEEeCCcEE
Confidence 4566788988 9999999888643
No 167
>PLN02666 5-oxoprolinase
Probab=38.92 E-value=85 Score=22.71 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=18.3
Q ss_pred ceEEEEeCCcceEEEEEE-eC-CeEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGIC-RD-GKVEILA 29 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~-~~-~~~~ii~ 29 (41)
+..+|||-|-|++=+.++ .+ ++..+.+
T Consensus 9 ~~rigIDvGGTFTD~v~~~~~~~~~~~~K 37 (1275)
T PLN02666 9 KFRFCIDRGGTFTDVYAEVPGGSDFRVLK 37 (1275)
T ss_pred CEEEEEECCcCCEeEEEEecCCCeEEEEE
Confidence 568999999999965544 33 3344443
No 168
>PF12049 DUF3531: Protein of unknown function (DUF3531); InterPro: IPR021920 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.
Probab=37.17 E-value=23 Score=19.50 Aligned_cols=10 Identities=30% Similarity=0.202 Sum_probs=8.0
Q ss_pred EEEEeCCcce
Q psy17247 5 VFGLYLGNSS 14 (41)
Q Consensus 5 ~iGiD~GTtn 14 (41)
.+.+||||+=
T Consensus 93 RcWvDLGTsD 102 (146)
T PF12049_consen 93 RCWVDLGTSD 102 (146)
T ss_pred EEEEECCCch
Confidence 5789999973
No 169
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=36.52 E-value=40 Score=20.09 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=11.2
Q ss_pred eCCcceEEEEEE-eCCe
Q psy17247 9 YLGNSSASIGIC-RDGK 24 (41)
Q Consensus 9 D~GTtns~va~~-~~~~ 24 (41)
|-||||.-+.++ .+|+
T Consensus 1 DWGTSnlR~~l~~~~g~ 17 (287)
T PF05035_consen 1 DWGTSNLRAWLMDEDGQ 17 (287)
T ss_dssp EE-SS-EEEEEE-CTTE
T ss_pred CCchhhhhhheecCCCc
Confidence 779999999999 4554
No 170
>PRK13328 pantothenate kinase; Reviewed
Probab=36.39 E-value=59 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.3
Q ss_pred eEEEEeCCcceEEEEEEeCC
Q psy17247 4 TVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~ 23 (41)
+.+-||.|+|..-+++++++
T Consensus 2 M~LliDiGNTriKwa~~~~~ 21 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADAG 21 (255)
T ss_pred cEEEEEeCccceeEEEEcCC
Confidence 37899999999999998754
No 171
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=36.21 E-value=37 Score=21.06 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEeCCcceEEEEEEeC-CeEE
Q psy17247 7 GLYLGNSSASIGICRD-GKVE 26 (41)
Q Consensus 7 GiD~GTtns~va~~~~-~~~~ 26 (41)
|||=||..-.++..++ |++.
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~ 21 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVI 21 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEE
Confidence 7999999999999977 7653
No 172
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=36.17 E-value=14 Score=20.75 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=8.5
Q ss_pred CCceEEEEeCCcc
Q psy17247 1 MSKTVFGLYLGNS 13 (41)
Q Consensus 1 m~~~~iGiD~GTt 13 (41)
|++..|+||+-++
T Consensus 1 m~kk~iaIDmD~v 13 (180)
T COG4502 1 MNKKTIAIDMDTV 13 (180)
T ss_pred CCCceEEeeHHHH
Confidence 6667777776553
No 173
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=35.17 E-value=51 Score=19.78 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=14.0
Q ss_pred EEeCCcceEEEEEEeCC
Q psy17247 7 GLYLGNSSASIGICRDG 23 (41)
Q Consensus 7 GiD~GTtns~va~~~~~ 23 (41)
.-|.|-||+-+|+++.+
T Consensus 2 v~DIGGTn~Rlal~~~~ 18 (316)
T PF02685_consen 2 VADIGGTNTRLALAEPD 18 (316)
T ss_dssp EEEEETTEEEEEEEECT
T ss_pred eEEeCcccEEEEEEEcC
Confidence 45999999999999543
No 174
>PF09159 Ydc2-catalyt: Mitochondrial resolvase Ydc2 / RNA splicing MRS1; InterPro: IPR015242 This domain forms a ribonuclease H fold consisting of two beta sheets and one alpha helix, arranged as a beta-alpha-beta motif. Each beta sheet has five strands, arranged in a 32145 order, with the second strand being antiparallel to the rest. They are capable of resolving Holliday junctions and cleave DNA after 5'-CT-3, and 5'-TT-3, sequences []. This entry also includes a domain found in the mitochondrial RNA-splicing protein MRS1 which is involved in the excision of group I introns [, ].; PDB: 1KCF_A.
Probab=35.08 E-value=57 Score=19.15 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=13.0
Q ss_pred EEEEeCCcceEEEEEE
Q psy17247 5 VFGLYLGNSSASIGIC 20 (41)
Q Consensus 5 ~iGiD~GTtns~va~~ 20 (41)
++.||+|-.|-+.+..
T Consensus 1 ILSIDmGIkNfAy~~l 16 (274)
T PF09159_consen 1 ILSIDMGIKNFAYCKL 16 (274)
T ss_dssp EEEEEE-STTEEEEEE
T ss_pred Cceeecchhhhhhhhh
Confidence 5799999999988876
No 175
>PRK13327 pantothenate kinase; Reviewed
Probab=34.43 E-value=89 Score=18.14 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=15.4
Q ss_pred ceEEEEeCCcceEEEEEEeCC
Q psy17247 3 KTVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~ 23 (41)
...+-||+||.-+.=.+-.+|
T Consensus 112 ~~~lVVD~GTA~TiD~v~~~g 132 (242)
T PRK13327 112 APVLVVGVGTALTIDLLGADG 132 (242)
T ss_pred CCEEEEEcCCceEEEEECCCC
Confidence 457889999988776664444
No 176
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=34.31 E-value=96 Score=18.13 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=18.4
Q ss_pred EEEEeCCcceEEEEEEe--CCeEEEEe
Q psy17247 5 VFGLYLGNSSASIGICR--DGKVEILA 29 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~--~~~~~ii~ 29 (41)
+..||+|+...-+.+++ ++..+++.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~ 28 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLF 28 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhh
Confidence 56899999999998884 45555543
No 177
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=34.02 E-value=30 Score=20.28 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=10.0
Q ss_pred ceEEEEeCCcce
Q psy17247 3 KTVFGLYLGNSS 14 (41)
Q Consensus 3 ~~~iGiD~GTtn 14 (41)
..++||||..+|
T Consensus 33 nl~vaIDfT~SN 44 (254)
T cd01459 33 NLIVAIDFTKSN 44 (254)
T ss_pred eEEEEEEeCCCC
Confidence 457899999988
No 178
>PRK13333 pantothenate kinase; Reviewed
Probab=34.00 E-value=73 Score=18.21 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=14.4
Q ss_pred eEEEEeCCcceEEEEEEeCC
Q psy17247 4 TVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~ 23 (41)
..+-||+||.-+.=.+ .+|
T Consensus 85 ~~lVIDaGTAiTiDvv-~~g 103 (206)
T PRK13333 85 DGVVVDAGSAITVDIM-SNG 103 (206)
T ss_pred CeEEEEcCCceEEEEE-cCC
Confidence 5688999999887766 444
No 179
>PRK10854 exopolyphosphatase; Provisional
Probab=32.82 E-value=1e+02 Score=19.66 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=20.9
Q ss_pred ceEEEEeCCcceEEEEEEe--CCeEEEEeC
Q psy17247 3 KTVFGLYLGNSSASIGICR--DGKVEILAN 30 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~--~~~~~ii~~ 30 (41)
..+..||+|+-..-+-+++ ++..+++.+
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~ 40 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGR 40 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeee
Confidence 3577999999988888873 566676653
No 180
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=32.50 E-value=30 Score=20.73 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=7.8
Q ss_pred EEeCCcceE
Q psy17247 7 GLYLGNSSA 15 (41)
Q Consensus 7 GiD~GTtns 15 (41)
|+|||.+++
T Consensus 232 G~D~G~~~d 240 (396)
T TIGR01547 232 GMDAGGQNS 240 (396)
T ss_pred eecCCCCCC
Confidence 999999873
No 181
>PF15088 NADH_dh_m_C1: NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Probab=31.02 E-value=23 Score=16.03 Aligned_cols=12 Identities=42% Similarity=0.418 Sum_probs=8.7
Q ss_pred EEEEeCCcceEE
Q psy17247 5 VFGLYLGNSSAS 16 (41)
Q Consensus 5 ~iGiD~GTtns~ 16 (41)
.+|+.||||--.
T Consensus 16 kVGLtlGts~fl 27 (49)
T PF15088_consen 16 KVGLTLGTSVFL 27 (49)
T ss_pred heeeecchHHHH
Confidence 478899987443
No 182
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=30.22 E-value=37 Score=23.13 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=13.6
Q ss_pred EEEeCCcceEEEEEE
Q psy17247 6 FGLYLGNSSASIGIC 20 (41)
Q Consensus 6 iGiD~GTtns~va~~ 20 (41)
||||||--|.-|+.+
T Consensus 2 I~IDLg~KnTGvfs~ 16 (802)
T TIGR03031 2 IGIDLGGKNTGVFSS 16 (802)
T ss_pred ceeecCCccceeehh
Confidence 799999999999875
No 183
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=30.05 E-value=1.1e+02 Score=17.27 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=9.2
Q ss_pred ceEEEEeCC----cceEEEEEE
Q psy17247 3 KTVFGLYLG----NSSASIGIC 20 (41)
Q Consensus 3 ~~~iGiD~G----Ttns~va~~ 20 (41)
..++|+|+| .-++++.++
T Consensus 226 ~~~~g~D~a~~~~~d~~~~~~~ 247 (384)
T PF03237_consen 226 PIIIGVDPAGGKGGDYTAIVVW 247 (384)
T ss_dssp -EEEEEE--SSCTTB-EEEEEE
T ss_pred eEEEEEECCCCCccCCEEEEEE
Confidence 357899999 445555555
No 184
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=30.00 E-value=48 Score=18.33 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.0
Q ss_pred EEeCCcceEEEEEEe
Q psy17247 7 GLYLGNSSASIGICR 21 (41)
Q Consensus 7 GiD~GTtns~va~~~ 21 (41)
.=||||.-|++-+.+
T Consensus 50 aND~GTv~sridI~r 64 (149)
T PF11000_consen 50 ANDYGTVVSRIDIVR 64 (149)
T ss_pred cCCcCeEEEEEEEEE
Confidence 348999999998763
No 185
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=29.73 E-value=23 Score=15.13 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=5.4
Q ss_pred eCCcceEEEE
Q psy17247 9 YLGNSSASIG 18 (41)
Q Consensus 9 D~GTtns~va 18 (41)
|.|+ +.|+|
T Consensus 65 ~~g~-y~C~a 73 (75)
T PF13927_consen 65 DNGT-YTCIA 73 (75)
T ss_dssp GTEE-EEEEE
T ss_pred hCcE-EEEEE
Confidence 4555 67765
No 186
>PRK09604 UGMP family protein; Validated
Probab=29.63 E-value=1.2e+02 Score=18.09 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.5
Q ss_pred eEEEEeCCcceEEEEEEeCC
Q psy17247 4 TVFGLYLGNSSASIGICRDG 23 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~ 23 (41)
.++|||=-+-.+++|+++++
T Consensus 2 ~iLgIdTS~~~~sval~~~~ 21 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDG 21 (332)
T ss_pred eEEEEEccccceEEEEEECC
Confidence 68999976777999999765
No 187
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=29.31 E-value=55 Score=17.74 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=9.7
Q ss_pred ceEEEEeCCcceE
Q psy17247 3 KTVFGLYLGNSSA 15 (41)
Q Consensus 3 ~~~iGiD~GTtns 15 (41)
...+-+||||-|-
T Consensus 84 nkhm~vD~Gtgnn 96 (133)
T PF02966_consen 84 NKHMMVDFGTGNN 96 (133)
T ss_dssp TEEEEEESSSSSS
T ss_pred CeEEEEEecCCCc
Confidence 3467899999763
No 188
>PRK00074 guaA GMP synthase; Reviewed
Probab=29.13 E-value=40 Score=21.48 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.6
Q ss_pred CceEEEEeCCcceEEE
Q psy17247 2 SKTVFGLYLGNSSASI 17 (41)
Q Consensus 2 ~~~~iGiD~GTtns~v 17 (41)
+..++-||||..|+-.
T Consensus 3 ~~~i~vlD~Gsq~~~l 18 (511)
T PRK00074 3 HDKILILDFGSQYTQL 18 (511)
T ss_pred CCEEEEEECCCCcHHH
Confidence 4568899999999843
No 189
>KOG0094|consensus
Probab=28.56 E-value=32 Score=20.13 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=9.1
Q ss_pred ceEEEEeCCcceE
Q psy17247 3 KTVFGLYLGNSSA 15 (41)
Q Consensus 3 ~~~iGiD~GTtns 15 (41)
.+.|||||=...-
T Consensus 52 qATIGiDFlskt~ 64 (221)
T KOG0094|consen 52 QATIGIDFLSKTM 64 (221)
T ss_pred cceeeeEEEEEEE
Confidence 3589999965544
No 190
>KOG0182|consensus
Probab=27.50 E-value=50 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.6
Q ss_pred eEEEEeCCcceEEEEEEeCCeEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVE 26 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ 26 (41)
..||+||+.+---|++...++++
T Consensus 204 ~sl~~Dfk~se~EVgvv~~~~p~ 226 (246)
T KOG0182|consen 204 SSLGIDFKSSELEVGVVTVDNPE 226 (246)
T ss_pred HHHhcccCCcceEEEEEEcCCcc
Confidence 36899999999999998666553
No 191
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.15 E-value=91 Score=19.57 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 5 VFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 5 ~iGiD~GTtns~va~~~~~~~~ii 28 (41)
+.-+|.|-++|.+++.++|++-.-
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~ 218 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT 218 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE
Confidence 456789999999999999876543
No 192
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=25.57 E-value=62 Score=16.91 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=9.7
Q ss_pred ceEEEEeCCcceE
Q psy17247 3 KTVFGLYLGNSSA 15 (41)
Q Consensus 3 ~~~iGiD~GTtns 15 (41)
...+-+||||-|-
T Consensus 78 gkh~~~d~gt~~~ 90 (114)
T cd02986 78 GQHMKVDYGSPDH 90 (114)
T ss_pred CcEEEEecCCCCC
Confidence 3567899999763
No 193
>KOG1939|consensus
Probab=24.70 E-value=1.2e+02 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=16.9
Q ss_pred ceEEEEeCCcceEEEEEEe
Q psy17247 3 KTVFGLYLGNSSASIGICR 21 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~ 21 (41)
.+.||+|.|.|..=|+.|.
T Consensus 305 ~P~IGFDMGGTSTDVsRY~ 323 (1247)
T KOG1939|consen 305 KPLIGFDMGGTSTDVSRYD 323 (1247)
T ss_pred CceeeecCCCCccceeccC
Confidence 4689999999999999885
No 194
>COG4328 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=24.66 E-value=44 Score=19.99 Aligned_cols=9 Identities=22% Similarity=0.291 Sum_probs=7.2
Q ss_pred eEEEEeCCc
Q psy17247 4 TVFGLYLGN 12 (41)
Q Consensus 4 ~~iGiD~GT 12 (41)
.++|||+|=
T Consensus 2 ~fvGiDlaW 10 (266)
T COG4328 2 KFVGIDLAW 10 (266)
T ss_pred ceEEeeeec
Confidence 678999874
No 195
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=23.06 E-value=14 Score=19.94 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=18.0
Q ss_pred EEEeCCcceEEEEEEe--CCeEEEEeCCC
Q psy17247 6 FGLYLGNSSASIGICR--DGKVEILANEA 32 (41)
Q Consensus 6 iGiD~GTtns~va~~~--~~~~~ii~~~~ 32 (41)
+-||||..++.+...+ +..+.+++++.
T Consensus 2 ~i~d~g~~~~~~~~l~~~G~~~~~~~~~~ 30 (178)
T cd01744 2 VVIDFGVKHNILRELLKRGCEVTVVPYNT 30 (178)
T ss_pred EEEecCcHHHHHHHHHHCCCeEEEEECCC
Confidence 4689999987655442 45677777543
No 196
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=22.74 E-value=51 Score=21.52 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=10.9
Q ss_pred ceEEEEeCCcceEEE
Q psy17247 3 KTVFGLYLGNSSASI 17 (41)
Q Consensus 3 ~~~iGiD~GTtns~v 17 (41)
..+||-||||--.-|
T Consensus 346 ~~vIgEDLGtvp~eV 360 (520)
T COG1640 346 MLVIGEDLGTVPAEV 360 (520)
T ss_pred CcEEecccCCCCHHH
Confidence 468999999965433
No 197
>PF07549 Sec_GG: SecD/SecF GG Motif; InterPro: IPR022646 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents a GG-containing domain found in the N-terminal region of prokaryotic SecD and SecF protein export membrane proteins. It is found in association with PF02355 from PFAM. SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=22.59 E-value=33 Score=13.59 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=4.5
Q ss_pred EEEEeCCc
Q psy17247 5 VFGLYLGN 12 (41)
Q Consensus 5 ~iGiD~GT 12 (41)
-.||||--
T Consensus 10 n~GlDf~G 17 (31)
T PF07549_consen 10 NLGLDFTG 17 (31)
T ss_dssp -EECCCC-
T ss_pred cccEEcCC
Confidence 46888853
No 198
>KOG0680|consensus
Probab=22.55 E-value=1.1e+02 Score=19.40 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=26.1
Q ss_pred CCceEEEEeCCcceEEEEEEeCCeEEEEeC
Q psy17247 1 MSKTVFGLYLGNSSASIGICRDGKVEILAN 30 (41)
Q Consensus 1 m~~~~iGiD~GTtns~va~~~~~~~~ii~~ 30 (41)
|+...|-+|=|-=|.-++...++++.+++|
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~~vpN 30 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPFVVPN 30 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCceeccc
Confidence 677889999999999999988888888886
No 199
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=22.54 E-value=75 Score=18.54 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.0
Q ss_pred eCCcceEEEEEEeCCe
Q psy17247 9 YLGNSSASIGICRDGK 24 (41)
Q Consensus 9 D~GTtns~va~~~~~~ 24 (41)
-||..|+.|++++++.
T Consensus 29 ~LGp~nv~vSIyE~~S 44 (241)
T PF11735_consen 29 FLGPENVFVSIYESGS 44 (241)
T ss_pred HhCcCeEEEEEEeCCC
Confidence 3789999999997764
No 200
>KOG0628|consensus
Probab=22.37 E-value=55 Score=21.45 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=11.0
Q ss_pred EEEEeCCcceEEE
Q psy17247 5 VFGLYLGNSSASI 17 (41)
Q Consensus 5 ~iGiD~GTtns~v 17 (41)
.++--+|||++|-
T Consensus 238 ~v~at~GTT~~ca 250 (511)
T KOG0628|consen 238 FVCATLGTTSSCA 250 (511)
T ss_pred EEEEeecCccccc
Confidence 5678899999995
No 201
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.15 E-value=2.2e+02 Score=18.09 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=20.4
Q ss_pred ceEEEEeCCcceEEEEEEe--CCeEEEEeC
Q psy17247 3 KTVFGLYLGNSSASIGICR--DGKVEILAN 30 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~--~~~~~ii~~ 30 (41)
..+..||+|+-..-+-+++ ++.++++.+
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~ 35 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLAR 35 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeec
Confidence 3467899999888888874 556666654
No 202
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=21.55 E-value=1.8e+02 Score=16.70 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceEEEEeCCcceEEEEEEeCCeEEE
Q psy17247 3 KTVFGLYLGNSSASIGICRDGKVEI 27 (41)
Q Consensus 3 ~~~iGiD~GTtns~va~~~~~~~~i 27 (41)
...+-+|+|..++-+.+++++++.-
T Consensus 112 ~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 112 KNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp SSEEEEEEESSEEEEEEEETTEEEE
T ss_pred CCEEEEEECCCceEEEEEECCeeeE
Confidence 3467899999999999998887653
No 203
>PF11220 DUF3015: Protein of unknown function (DUF3015); InterPro: IPR021383 This bacterial family of proteins has no known function.
Probab=21.50 E-value=53 Score=17.89 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=9.6
Q ss_pred EEEEeCCcceE
Q psy17247 5 VFGLYLGNSSA 15 (41)
Q Consensus 5 ~iGiD~GTtns 15 (41)
..||-+||.+|
T Consensus 41 TfGiTsGTsgC 51 (144)
T PF11220_consen 41 TFGITSGTSGC 51 (144)
T ss_pred ceeeecccCCC
Confidence 57999999988
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=2.3e+02 Score=19.34 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=17.5
Q ss_pred eEEEEeCCcceEEEEEEeCCeEEEE
Q psy17247 4 TVFGLYLGNSSASIGICRDGKVEIL 28 (41)
Q Consensus 4 ~~iGiD~GTtns~va~~~~~~~~ii 28 (41)
.++|||=|+|--..++--+|++--+
T Consensus 245 lIVGIDPGiTtgiAvldldGevl~~ 269 (652)
T COG2433 245 LIVGIDPGITTGIAVLDLDGEVLDL 269 (652)
T ss_pred eEEEeCCCceeeEEEEecCCcEEee
Confidence 5789999999766555567765433
No 205
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=20.14 E-value=2.2e+02 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=15.3
Q ss_pred ceEEEEEEe-CCeEEEEeCCC
Q psy17247 13 SSASIGICR-DGKVEILANEA 32 (41)
Q Consensus 13 tns~va~~~-~~~~~ii~~~~ 32 (41)
+.+|+|.++ +++.+++...|
T Consensus 50 p~~~~A~~~~~g~l~v~~~tQ 70 (547)
T PF02738_consen 50 PHGAVAWWDEDGRLTVWSSTQ 70 (547)
T ss_dssp -SEEEEEEETTTEEEEEES-S
T ss_pred CCeEEEEEccCCCEEEEECCc
Confidence 467899998 99999998654
No 206
>PF15530 Toxin_50: Putative toxin 50
Probab=20.14 E-value=66 Score=18.07 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=5.6
Q ss_pred eEEEEeCCc
Q psy17247 4 TVFGLYLGN 12 (41)
Q Consensus 4 ~~iGiD~GT 12 (41)
..+||+||-
T Consensus 87 asiGi~FGP 95 (168)
T PF15530_consen 87 ASIGISFGP 95 (168)
T ss_pred ceEeeecCC
Confidence 356777763
Done!