RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17247
         (41 letters)



>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
          protein folding, ATP-binding, Ca binding, chaperone,
          nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
          {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
          Length = 675

 Score = 47.3 bits (113), Expect = 7e-09
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MS T FGL LGN+++ + + R+  ++I+ NE  +R TP+VV
Sbjct: 1  MS-TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVV 40


>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
          SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
          Length = 554

 Score = 41.0 bits (97), Expect = 1e-06
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 1  MSK-TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK    G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 1  MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 42


>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
          ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
          stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
          1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
          1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
          3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
          Length = 404

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G+ LG + + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 24 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYV 61


>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
          chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
          PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
          Length = 394

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          TV G+ LG + + + + ++GK EILANE G+R+TP+ V
Sbjct: 19 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYV 56


>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
          rearrangement; HET: ADP; 2.37A {Geobacillus
          kaustophilus HTA426}
          Length = 509

 Score = 29.1 bits (66), Expect = 0.024
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          MSK + G+ LG +++ + +   G+V+++ N  G+R TP+VV
Sbjct: 1  MSKII-GIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVV 40


>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide
          binding, protein folding, acetylation, ATP-binding,
          cell inner membrane; NMR {Escherichia coli}
          Length = 605

 Score = 28.4 bits (64), Expect = 0.047
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          M K + G+ LG +++ + I       +L N  GDR TP+++
Sbjct: 1  MGK-IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 40


>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange
          factor, coiled-coil, complex (HSP24/HSP70); 2.80A
          {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
          Length = 383

 Score = 27.1 bits (61), Expect = 0.12
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 1  MSKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          M K + G+ LG +++ + I       +L N  GDR TP+++
Sbjct: 1  MGK-IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 40


>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
           nysgrc., structural genomics, protein structure
           initiative; 1.87A {Archaeoglobus fulgidus}
          Length = 305

 Score = 24.7 bits (53), Expect = 0.83
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 6   FGLYLGNSSASIGICRD 22
           +   LG+SS +I +  D
Sbjct: 94  YCENLGSSSRAIAVTSD 110


>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
          3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
          thuringiensis serovar kurstakorganism_taxid}
          Length = 264

 Score = 21.7 bits (47), Expect = 8.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 23 GKVEILANEAGDRVT 37
          GK++ L N AG  V 
Sbjct: 84 GKIDFLINNAGPYVF 98


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0835    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 591,724
Number of extensions: 19641
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 9
Length of query: 41
Length of database: 6,701,793
Length adjustment: 14
Effective length of query: 27
Effective length of database: 6,310,899
Effective search space: 170394273
Effective search space used: 170394273
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)