RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17247
         (41 letters)



>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
          fragment {Cow (Bos taurus) [TaxId: 9913]}
          Length = 185

 Score = 39.6 bits (92), Expect = 1e-06
 Identities = 16/38 (42%), Positives = 27/38 (71%)

Query: 4  TVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
             G+ LG++ + +G+ + GKVEI+AN+ G+R TP+ V
Sbjct: 2  PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV 39


>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
          fragment {Escherichia coli, gene dnaK [TaxId: 562]}
          Length = 183

 Score = 36.9 bits (85), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 5  VFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAVV 41
          + G+ LG +++ + I       +L N  GDR TP+++
Sbjct: 2  IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSII 38


>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 24.6 bits (52), Expect = 0.34
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 2   SKTVFGLYLGNSSASIGICRDGKVEILANEAGDRVTPAV 40
           ++TVF     +  +   +C  G+ + L  + G R TPAV
Sbjct: 262 NRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAV 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 138,363
Number of extensions: 3224
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 3
Length of query: 41
Length of database: 2,407,596
Length adjustment: 14
Effective length of query: 27
Effective length of database: 2,215,376
Effective search space: 59815152
Effective search space used: 59815152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)