Query psy1725
Match_columns 837
No_of_seqs 398 out of 3161
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:09:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3E-38 1E-42 364.4 34.4 408 172-834 8-453 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 8.3E-31 2.9E-35 298.0 27.8 184 171-355 23-213 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.2E-29 3.9E-34 287.7 33.5 175 174-348 24-228 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 6.2E-26 2.1E-30 261.4 34.9 143 206-348 49-195 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.2E-27 4.1E-32 265.8 14.5 176 179-354 3-180 (375)
6 2xut_A Proton/peptide symporte 99.9 9.1E-22 3.1E-26 228.6 23.1 151 198-348 35-197 (524)
7 2cfq_A Lactose permease; trans 99.9 1.5E-22 5.1E-27 228.7 10.6 160 191-351 22-189 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2E-11 6.7E-16 138.0 20.3 165 185-349 261-433 (451)
9 2cfq_A Lactose permease; trans 99.2 2.4E-10 8.3E-15 128.4 18.8 145 210-354 258-405 (417)
10 3o7q_A L-fucose-proton symport 99.2 6.8E-10 2.3E-14 124.8 19.9 153 193-348 275-431 (438)
11 4gc0_A D-xylose-proton symport 99.0 2E-08 6.7E-13 114.8 20.3 169 185-353 286-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.8 1E-08 3.5E-13 117.3 9.9 155 196-351 303-474 (491)
13 2gfp_A EMRD, multidrug resista 98.5 3.2E-08 1.1E-12 108.8 3.8 149 186-337 209-364 (375)
14 2xut_A Proton/peptide symporte 98.5 2.8E-07 9.4E-12 106.3 10.3 130 703-832 53-187 (524)
15 3iyz_A Aquaporin-4; water tran 35.7 3.3E+02 0.011 28.5 12.4 7 543-549 246-252 (340)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3e-38 Score=364.39 Aligned_cols=408 Identities=18% Similarity=0.260 Sum_probs=309.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQI--------TRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQA 243 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~--------s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~v 243 (837)
++.|.+.++++++.++.++|.++++.+++.+.++++. +....+++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777888899999999999999999999998853 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHH
Q psy1725 244 LTLCAVLLFYYGILSS------------------LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLL 304 (837)
Q Consensus 244 l~~~~~l~~i~~i~~a------------------~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~ 304 (837)
++++.+++.+++++++ +++|+++++++|+++|+|.|+. +.+..+++|++|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999999 5889999999999999999998 88888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccc
Q psy1725 305 DCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGR 384 (837)
Q Consensus 305 ~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 384 (837)
+.+..+|.+++++++..+....+|.+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 193 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASW------------------------------------------------------ 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTT------------------------------------------------------
T ss_pred hhhhhhhhhhhhhcchhhcccccccc------------------------------------------------------
Confidence 99999999999888877644322110
Q ss_pred cccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q psy1725 385 LVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP 464 (837)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~ 464 (837)
T Consensus 194 -------------------------------------------------------------------------------- 193 (491)
T 4gc0_A 194 -------------------------------------------------------------------------------- 193 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchH
Q psy1725 465 LRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWK 544 (837)
Q Consensus 465 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~ 544 (837)
.....||
T Consensus 194 -------------------------------------------------------------------------~~~~~~~ 200 (491)
T 4gc0_A 194 -------------------------------------------------------------------------LNTDGWR 200 (491)
T ss_dssp -------------------------------------------------------------------------TTTTHHH
T ss_pred -------------------------------------------------------------------------ccchhhH
Confidence 0123577
Q ss_pred HHHHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhh
Q psy1725 545 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRT 624 (837)
Q Consensus 545 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (837)
..+....++.++.++..+++||||||+.+|++.+|+++.+++.+.++..+++..+..+... +++........ ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~ 276 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLD---HGRKTGGRLLM-FGVG 276 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTHHHH-SCCT
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHH---hhhhhhhHHHH-hccc
Confidence 7777777888888888889999999999999999999999998876543322211111111 01111111111 1112
Q ss_pred hhHHHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccch
Q psy1725 625 TSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT 704 (837)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (837)
+..+..... .++|++|.+.+ ..|.+.+++..+. ...
T Consensus 277 ~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------------~~~ 312 (491)
T 4gc0_A 277 VIVIGVMLS-------------IFQQFVGINVV-----LYYAPEVFKTLGA--------------------------STD 312 (491)
T ss_dssp HHHHHHHHH-------------HHHHHTCHHHH-----HHHHHHHHHHSSC--------------------------CHH
T ss_pred HHHHHHHHH-------------HHHHHhhhhHH-----HhcchHHHHhcCC--------------------------Ccc
Confidence 222222222 25566665544 4445666555543 234
Q ss_pred hhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhhhhhh
Q psy1725 705 QDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQS----RAYLTVTLFVARGIIAGVFQAAY 780 (837)
Q Consensus 705 ~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 780 (837)
+.....+..++..+++.+++++++||+|||+.++.+...++++++.+...... ...+...+++..++..+..++.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566778889999999999999999999999999999888888776555421 22333444455556678889999
Q ss_pred hhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc-------chhhHHHHHHHHhh
Q psy1725 781 VYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-------SLSIAMTVYGVAAL 834 (837)
Q Consensus 781 ~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~ 834 (837)
++++|+||++.|+++.|++++++++++++++.++|.+.+. +...++++++++++
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987653 23456677776654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=8.3e-31 Score=298.04 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=168.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++.+|..+..++++.+..+++...+++.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345677788888899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 251 LFYYGILSSL----APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 251 ~~i~~i~~a~----a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
++++.+++++ ++|++.++++|++.|++.+.. +...+++.|++|+++|++++++...+..+|.++||++++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 88889999999999999999999999999999999999998888
Q ss_pred cC-hHHHHHHHHHHHHHHHH-HHhhccCCcch
Q psy1725 326 LG-WKWLLALSTAPLLAFAC-ICPWLPESARY 355 (837)
Q Consensus 326 ~g-Wr~~f~i~~i~~~~~~~-~~~~~pesp~~ 355 (837)
.+ ||+.|++.++..++..+ ..+++||+|+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 88 99999999887665544 44568888753
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.2e-29 Score=287.66 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
++..+..+++..+..+++....++.+|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||++++++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 45566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-
Q psy1725 254 YGILS---SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-PTLG- 327 (837)
Q Consensus 254 ~~i~~---a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-~~~g- 327 (837)
+.+++ ++++|++.++++|++.|++.|.. +...++++|++|+++|++++++.+.+..+|.+++|++++.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999 89999999999999999999998 888899999999999999999999999999999999999987 5544
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHhh
Q psy1725 328 ------------------------WKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 328 ------------------------Wr~~f~i~~i~~~~~~~~~~~ 348 (837)
|||.|++.++..++..+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998777655554444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=6.2e-26 Score=261.39 Aligned_cols=143 Identities=21% Similarity=0.208 Sum_probs=132.4
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HH
Q psy1725 206 WQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQ 283 (837)
Q Consensus 206 ~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~ 283 (837)
+|++..+.+++.+++.++..++++++|+++|| +|||++++++.++++++.+++++++|++.++++|++.|++.+.. +.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999988 88
Q ss_pred HHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 284 SVTLYAEFLPSKQ--RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 284 ~~~~i~e~~~~~~--Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
..++++|++|+++ |+.+.++++.+..+|.+++|++++.+.+..+||+.|++.++..++..+..++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988 7888888999999999999999999999899999999987765555444443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.2e-27 Score=265.80 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
..+++..++..++...+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 259 SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 259 a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
++++|++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+||+.|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 88888899999999999999999999999999999999999988899999999887
Q ss_pred HHHHHHH-HHhhccCCcc
Q psy1725 338 PLLAFAC-ICPWLPESAR 354 (837)
Q Consensus 338 ~~~~~~~-~~~~~pesp~ 354 (837)
..++..+ ..+++||+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHCcccCC
Confidence 7666655 4445777653
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=9.1e-22 Score=228.56 Aligned_cols=151 Identities=11% Similarity=0.151 Sum_probs=136.6
Q ss_pred HHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHHHHHHHHHHhcc-cHHHHHH
Q psy1725 198 LSPALHCDWQ------ITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-GRKQALTLCAVLLFYYGILSSLAP-SYTWMLF 269 (837)
Q Consensus 198 ~l~~i~~~~~------~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-GRr~vl~~~~~l~~i~~i~~a~a~-n~~~l~i 269 (837)
..+.+.+++| ++..+.+++.+++.++..++++++|+++||+ |||++++++.++++++.+++++++ |++.+++
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445678899 9999999999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL---LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~ 345 (837)
+|++.|++.+.. +...+++.|++|+++|+++.+. ...+..+|.++||++++.+.+..+||+.|++.++..++..+.
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999988 8888899999999999877666 889999999999999999998889999999988776665555
Q ss_pred Hhh
Q psy1725 346 CPW 348 (837)
Q Consensus 346 ~~~ 348 (837)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=1.5e-22 Score=228.75 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=112.1
Q ss_pred HHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH---HHHhcccHH-
Q psy1725 191 EMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI---LSSLAPSYT- 265 (837)
Q Consensus 191 ~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i---~~a~a~n~~- 265 (837)
......+.+|. +++++|++..+.+++.+.+.++..++++++|+++||+|||++++++.+++.++.. .+++++...
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 5667999999999999999999999999999999999999999999888765322 223332221
Q ss_pred HHHHHHHHHHhhhchH-HHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy1725 266 WMLFLRGLVGFAIGCV-PQSVTLYAEFLPS--KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAF 342 (837)
Q Consensus 266 ~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~ 342 (837)
.++.+|++.|++.+.. +...+.+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 2345666666655543 3333333344332 456777788878888999999999998876 58999999887765555
Q ss_pred HHHHhhccC
Q psy1725 343 ACICPWLPE 351 (837)
Q Consensus 343 ~~~~~~~pe 351 (837)
.+..++.+|
T Consensus 181 ~~~~~~~~~ 189 (417)
T 2cfq_A 181 AVLLFFAKT 189 (417)
T ss_dssp HHHSCSSCC
T ss_pred HHHHHHcCc
Confidence 444444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=2e-11 Score=137.97 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHHHHHHHHHH-HHHHHHHh
Q psy1725 185 WMADSMEMTILSILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--GRKQALTLCAVLLF-YYGILSSL 260 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--GRr~vl~~~~~l~~-i~~i~~a~ 260 (837)
.++.......+....|.+.++ +|.+..+.++..+.+.++..++.++.|+++||+ |||+.+.++.++.. ++.++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 334444444555666766666 899999999999999999999999999999999 99999988888777 66666666
Q ss_pred c--ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccChHHHHHHHH
Q psy1725 261 A--PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWAL-GACFEVLLALIVMPTLGWKWLLALST 336 (837)
Q Consensus 261 a--~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~l-G~~lgp~l~~~l~~~~gWr~~f~i~~ 336 (837)
. .+.+.+++.-++.|++.+.. +....++.|.+|+++||.+.++.+....+ |..++|.+.+.+.+..||++.|++.+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6 37888888899999988887 77778889999999999999999999999 99999999999999999999999988
Q ss_pred HHHHHHHHHHhhc
Q psy1725 337 APLLAFACICPWL 349 (837)
Q Consensus 337 i~~~~~~~~~~~~ 349 (837)
+..++..++.+++
T Consensus 421 ~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 421 GGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766665555543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.21 E-value=2.4e-10 Score=128.40 Aligned_cols=145 Identities=20% Similarity=0.129 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHH
Q psy1725 210 RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLY 288 (837)
Q Consensus 210 ~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i 288 (837)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888899999999999999999999999999998888888888889988988888889887766 6667788
Q ss_pred HhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh-hccCCcc
Q psy1725 289 AEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP-WLPESAR 354 (837)
Q Consensus 289 ~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~-~~pesp~ 354 (837)
.|.+|++.||.+.++ ++.+..+|.+++|.++|.+.+..|++..|++.++..++..++.+ +.||+++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999998 47888899999999999998888899999888876666555544 4666543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.17 E-value=6.8e-10 Score=124.81 Aligned_cols=153 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred HHHHHHHHHH-H-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q psy1725 193 TILSILSPAL-H-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFL 270 (837)
Q Consensus 193 ~~~~~~l~~i-~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~ 270 (837)
.......|.+ . +.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++...++..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3344444544 4 4459999999999999999999999999999999999999999999999999999999988776655
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHHHhh
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~~~~~~~ 348 (837)
++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| +++.|++.++..++.++..++
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 8889988887 77888889999866 888888777 556999999999999999888 999998876554444443333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=2e-08 Score=114.79 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc---
Q psy1725 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--- 261 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--- 261 (837)
.+........+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 33334444555666778888888888888888888889999999999999999999999999988888776665433
Q ss_pred --ccHHHHHH-HHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHH
Q psy1725 262 --PSYTWMLF-LRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP------TLGWKWLL 332 (837)
Q Consensus 262 --~n~~~l~i-~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~------~~gWr~~f 332 (837)
++...++. .-+..+++.+..+....+.+|++|.+.|+.++++......+|.++++.+...+.+ ..++.+.|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 12222222 2222334444446777888999999999999999999888888888877655532 34567788
Q ss_pred HHHHHHHHHHH-HHHhhccCCc
Q psy1725 333 ALSTAPLLAFA-CICPWLPESA 353 (837)
Q Consensus 333 ~i~~i~~~~~~-~~~~~~pesp 353 (837)
++.++.+++.. +.++++|||.
T Consensus 446 ~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHheecCCC
Confidence 87776655554 4556799994
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.78 E-value=1e-08 Score=117.28 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH-----HHHHHHHHHHHHHHhcc-------
Q psy1725 196 SILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT-----LCAVLLFYYGILSSLAP------- 262 (837)
Q Consensus 196 ~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~-----~~~~l~~i~~i~~a~a~------- 262 (837)
...++.+. +.++.+....++..+...++..++.++.|+++||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344443 446666567788888899999999999999999999986655 67777777766666543
Q ss_pred --cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 263 --SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 263 --n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
+.+.+++.-++.|++.+.. +....++.|.+|++.||.+.++......+|..+++.+++.+.+. ++.+.|++.++..
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 7777888889999998887 78888889999999999999999999999999999998887654 6778888877665
Q ss_pred HHHHHHHhh-ccC
Q psy1725 340 LAFACICPW-LPE 351 (837)
Q Consensus 340 ~~~~~~~~~-~pe 351 (837)
++..++.++ .++
T Consensus 462 ~~~~~~~~~~~~~ 474 (491)
T 4aps_A 462 VVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH
Confidence 555554444 444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.52 E-value=3.2e-08 Score=108.77 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH-HHHHHH--HHHh-
Q psy1725 186 MADSMEMTILSILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL-LFYYGI--LSSL- 260 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l-~~i~~i--~~a~- 260 (837)
++............|.+ ++++|.+..+.++..+.+.++..++.++.+++.||+||+. ..+..+ ..++.. ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 33333444444555544 4448888999999999999999999999999999998832 233322 222221 2222
Q ss_pred -cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 261 -APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 261 -a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
.++.+.+++.-++.|++.+.. +....++.|.+| ++||++.++.+....+|..++|.+.+.+.+..+|+..+++.++
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 246777888889999998887 888888899998 8999999999999999999999999998877778887776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.48 E-value=2.8e-07 Score=106.28 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=99.6
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q psy1725 703 NTQDYMDLLWTTLAEFPGIFATIFVIEKF-GRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYV 781 (837)
Q Consensus 703 ~~~~~~~~~~~~~~~~~g~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (837)
..+.........++..++.+++|+++||+ |||+++.++.++.+++.+++.+...+...+.+..++.+++.....+....
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence 33444555667788889999999999999 99999999988888887776654313344444455555666677899999
Q ss_pred hccccCCCCccchhhHH---HHHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHH
Q psy1725 782 YTPEVYPTPLRAVGVGT---CSAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVA 832 (837)
Q Consensus 782 ~~~E~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 832 (837)
+..|.+|++.|+++.+. .+....+|.+++|.+.+.+.+. +....+++.++.
T Consensus 133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999877666 8889999999999999988875 555556555443
No 15
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=35.72 E-value=3.3e+02 Score=28.50 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=2.7
Q ss_pred hHHHHHh
Q psy1725 543 WKWLLAL 549 (837)
Q Consensus 543 w~~~~~~ 549 (837)
+.|++.+
T Consensus 246 ~~WVywv 252 (340)
T 3iyz_A 246 NHWIYWV 252 (340)
T ss_pred cEeehhH
Confidence 3334433
Done!