RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1725
(837 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 220 bits (562), Expect = 5e-63
Identities = 97/400 (24%), Positives = 160/400 (40%), Gaps = 100/400 (25%)
Query: 479 LGAMITPYIA------QALTLCAVLLFYYGILSSLAPSYTWMLFLRGLC----------- 521
LG+ + Y++ + L L ++ G+L++ +P+YT L R L
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQA 201
Query: 522 ----------------------FWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 559
F++LG L+A + W+WL + P F
Sbjct: 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFL 258
Query: 560 ICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV----DDSMVGEHRGRVK 615
+ ++PES R+ ++ G+ E+AL L+ IA NGK + L + D S + +
Sbjct: 259 LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLD 318
Query: 616 DLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDT 675
+ LR T+L L +W AF YYG+VL L
Sbjct: 319 LFRTPNLRKTTLCLMMLW-------------------FTTAFSYYGLVLDLGNLGGN--- 356
Query: 676 RCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKR 735
Y+DL + L E P T+ +I++ GR+
Sbjct: 357 ------------------------------IYLDLFISGLVELPAKLITLLLIDRLGRRY 386
Query: 736 TMAVQFVIFTACVSFLFICTQSRAYLTVTL-FVARGIIAGVFQAAYVYTPEVYPTPLRAV 794
TMA ++ + L +L L + + I FQ Y+YT E+YPT +R +
Sbjct: 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL 446
Query: 795 GVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834
GVG CS MAR+G++I+P++ L + L + + ++G AL
Sbjct: 447 GVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLAL 485
Score = 216 bits (551), Expect = 2e-61
Identities = 86/278 (30%), Positives = 134/278 (48%), Gaps = 14/278 (5%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS--ILSPALHCDWQIT---R 210
F V Q N G KLS GL ++ S S + +W +
Sbjct: 68 CLRFMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDA 126
Query: 211 YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFL 270
++ LT + F+G++L S +GY+SDR+GRK+ L L ++ G+L++ +P+YT L
Sbjct: 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186
Query: 271 RGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329
R LVG I G Q+V L EFLP KQRA L+ F++LG L+A + W+
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR 243
Query: 330 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV-- 387
WL + P F + ++PES R+ ++ G+ E+AL L+ IA NGK + L +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL 303
Query: 388 --DDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKV 423
D S + + + LR T+L L +W+ +
Sbjct: 304 EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341
Score = 83.5 bits (207), Expect = 1e-16
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 435 LTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLC 494
T + + I FQ Y+YT E+YPT +R +GVG CS MAR+G++I+P++
Sbjct: 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW 472
Query: 495 AVL-LFYYGILSSLAPSYTWMLFL 517
L L +G L+ LA T LFL
Sbjct: 473 LFLPLVLFGGLALLAGILT--LFL 494
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 111 bits (279), Expect = 4e-26
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
Query: 186 MADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT 245
+ D ++ + +PA+ +W + Q + +GM + F+G ++DR GR++ L
Sbjct: 27 LMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLL 86
Query: 246 LCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLL 304
+L + +L +LA + T +L LR L G +G +P L +E+ P + R V L+
Sbjct: 87 WSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146
Query: 305 DCFWALGACFEVLLALIVMPTLGWKWLLALST-APLLAFACICPWLPESARYHVASGQPE 363
C + +GA LA ++P GW+ L + APLL + +LPES + V+ PE
Sbjct: 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PE 205
Query: 364 KALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLW 415
+ IA L + G R K L + ++LLW
Sbjct: 206 TVRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKTARITVLLW 256
Score = 72.8 bits (179), Expect = 2e-13
Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 57/303 (18%)
Query: 521 CFWALGACFEVLLALIVMPTLGWKWLLALST-APLLAFACICPWLPESARYHVASGQPEK 579
C + +GA LA ++P GW+ L + APLL + +LPES + V+ PE
Sbjct: 148 CGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PET 206
Query: 580 ALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSY 639
+ IA L + G R K L + ++LLW ++++
Sbjct: 207 VRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFML--- 262
Query: 640 PSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADC 699
Y + +L
Sbjct: 263 ----------------LVGVYFLTNWLPKLM----------------------------- 277
Query: 700 RQLNTQDYMDLLWTTLAEFPGIFATIF---VIEKFGRKRTMAVQFVIFTACVSFLFICTQ 756
+L + L F G+ +I + ++ G + T ++ A + L T
Sbjct: 278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL--LLLLGAVFAVLVGSTL 335
Query: 757 SRAYLTVTLFVARGIIAGVFQAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQ 815
L + L G Q+ Y YPT +RA GVG + RLGA+I P +A
Sbjct: 336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395
Query: 816 VLL 818
LL
Sbjct: 396 YLL 398
Score = 41.6 bits (98), Expect = 0.001
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 437 VTLFVARGIIAGVFQAA-----YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA 488
TL + G IAG F Y YPT +RA GVG + RLGA+I P +A
Sbjct: 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394
Score = 37.3 bits (87), Expect = 0.030
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 173 FQAKLSLYTGLCWMADSMEMTI---LSILSPALHCDWQITRYQQALTTTIVFLGMMLSST 229
FQ K + T L W+ M + L+ P L + + A + G ++ S
Sbjct: 244 FQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSI 303
Query: 230 FWGYVSDRYGRKQA---LTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSV- 285
+G+++DR G + L L AV ++ S S T +L L + GF + QS
Sbjct: 304 IFGWLADRLGPRVTALLLLLGAVFAV---LVGSTLFSPTLLLLLGAIAGFFVN-GGQSGL 359
Query: 286 -TLYAEFLPSKQRA 298
L A F P+ RA
Sbjct: 360 YALMALFYPTAIRA 373
Score = 33.1 bits (76), Expect = 0.58
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 729 EKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYP 788
++ GR+R + ++F+ + L + L + F+A + G+ E P
Sbjct: 77 DRIGRRRVLLWSILLFSVF-TLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAP 135
Query: 789 TPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
R VG +GA + ++A L+
Sbjct: 136 KRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 110 bits (276), Expect = 8e-25
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSS 228
G G+FQ L GL MAD +E+ ++ + P+ D I + + IV+LGMM+ +
Sbjct: 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGA 219
Query: 229 TFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAI-GCVPQSVTL 287
FWG ++D+ GRKQ L +C + ++ SS Y + LF R L GF I G +P +
Sbjct: 220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSY 279
Query: 288 YAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL--ALSTAPLLAFACI 345
+AEFL ++R + + L FW +G + +A ++P GW + + A F +
Sbjct: 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339
Query: 346 CPW-----------LPESARYHVASGQPEKALATLREIAADN 376
C + +PES R+ + +G+ ++A L+ I N
Sbjct: 340 CAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381
Score = 43.0 bits (101), Expect = 6e-04
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 714 TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFIC-TQSRAYLTVTLFVARGII 772
TLA PG + +++K GR R +A V+ +C+S F+ S + + L + G+
Sbjct: 605 TLAVLPGNIVSALLMDKIGRLRMLAGSMVL--SCISCFFLSFGNSESAMIALLCLFGGLS 662
Query: 773 AGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMI 809
+ A V T E+YP+ RA G +A+ + A++
Sbjct: 663 IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699
Score = 30.3 bits (68), Expect = 4.6
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 517 LRGLC-FWALGACFEVLLALIVMPTLGWKWLL--ALSTAPLLAFACICPW---------- 563
L LC FW +G + +A ++P GW + + A F +C +
Sbjct: 293 LSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT 352
Query: 564 -LPESARYHVASGQPEKALATLREIAADN 591
+PES R+ + +G+ ++A L+ I N
Sbjct: 353 FMPESPRFFLENGKHDEAWMILKLIHDTN 381
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 100 bits (252), Expect = 7e-23
Identities = 84/348 (24%), Positives = 136/348 (39%), Gaps = 32/348 (9%)
Query: 182 GLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK 241
L + ++ +LS P L D ++ Q L + LG L S GY+SDR+GR+
Sbjct: 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64
Query: 242 QALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKC 300
+ L L +L +L + A S +L R L+G G + + AE+ P K+R +
Sbjct: 65 RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124
Query: 301 VVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP---------- 350
+ L + LGA LL ++ +LGW+WL + L A + +L
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAF 184
Query: 351 ---ESARYHVASGQPEKALATLREIAADNGK-------PMLLGRLVVDDSMVGEHRGRVK 400
Y + + P L AA+ G +LG L+ ++ + GR +
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG--GLLSDRLGRRR 242
Query: 401 DLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEV 460
LL + LLL + + + A L V L + + F A E+
Sbjct: 243 LLLLI-----GLLLAALGLL----LLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 461 YPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLA 508
P R G + LG + P +A L + IL++LA
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341
Score = 55.0 bits (133), Expect = 6e-08
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
Query: 710 LLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVAR 769
L L G + ++ GR+R + + ++ A L S A L V L +
Sbjct: 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276
Query: 770 GIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTV 828
+ F A E+ P R G + LG + P +A +LL + +
Sbjct: 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 829 YGVAAL 834
AL
Sbjct: 337 LAALAL 342
Score = 53.9 bits (130), Expect = 2e-07
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY 238
L ++ +L+ L L ++ + L ++ LG +L + G +SDR
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 239 GRKQALTLCAVLLFYYGIL-SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQ 296
GR++ L L +LL G+L +LAPS +L L+GF +G P +TL +E P +
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 297 RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP 350
R L + F +LG LLA +++ T G+ + + A L A + LP
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 39.2 bits (92), Expect = 0.006
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 726 FVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPE 785
++ ++FGR+R + + ++ A S L S L V F+ ++ AA E
Sbjct: 56 YLSDRFGRRRVLLL-GLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 786 VYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSS 821
+P R +G SA LGA++ P + +L +S
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 87.7 bits (218), Expect = 4e-18
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY-TWMLFL 270
L +I +G ++ S F G + DR+GRK++L + VL +L A +ML +
Sbjct: 47 LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106
Query: 271 -RGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV---MPT 325
R +VG +G + V +Y +E P K R L G ++ L + +
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 326 LGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
GW+ L L P + +LPES R+ V G+ E+A A L ++
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKL 213
Score = 50.0 bits (120), Expect = 3e-06
Identities = 64/358 (17%), Positives = 111/358 (31%), Gaps = 94/358 (26%)
Query: 499 FYYGILSSLAPSYT---WMLFLRGLCFWALGACFEVLLAL-------------IVMPTLG 542
G +S L P Y LRG ALG+ +++ + + G
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRG----ALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 543 WKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV 602
W+ L L P + +LPES R+ V G+ E+A A L + L G V
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK---------LRGVSDV 219
Query: 603 DDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFC---- 658
D + E + + + + L K+ R+ V L
Sbjct: 220 DQEIQEEKDSLERSVEAEKASWLELFR------GKTVRQRLLMGVMLQ--IFQQLTGINA 271
Query: 659 --YYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLA 716
YY + T S+S + + +
Sbjct: 272 IFYYSPTIFETLGL-------SDSLLVTIIVG----------------------VVNFVF 302
Query: 717 EFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVF 776
F IF++++FGR+ + + C L + A L V GI+A VF
Sbjct: 303 TFIA----IFLVDRFGRRPLLLLGAAGMAICFLVLGV-----ALLGVAKSKGAGIVAIVF 353
Query: 777 QA-------------AYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSS 821
+V E++P +R + +A L + ++ ++ +
Sbjct: 354 ILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAI 411
Score = 29.2 bits (66), Expect = 9.8
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 29/106 (27%)
Query: 211 YQQALTTTIVFLGM-MLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLF 269
+L TI+ + + + ++ DR+GR+ L
Sbjct: 285 LSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRP-------------------------LL 319
Query: 270 LRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315
L G G AI + V L +K + +V + A F
Sbjct: 320 LLGAAGMAICFLVLGVAL---LGVAKSKGAGIVAIVFILLFIAFFA 362
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 82.4 bits (204), Expect = 2e-16
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPS---YTWML 268
L +I +G + + F G++SDR+GRK++L L LLF G + + ML
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL-LIIALLFVIGAILMGLAAFALSVEML 130
Query: 269 FL-RGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP-- 324
+ R L+G +G V +Y +E P R L G L+A
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI----LVAYGFGSGK 186
Query: 325 -----TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
TLGW+ L L P +LPES R+ V G+ E+A +L +
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARL 239
Score = 48.5 bits (116), Expect = 1e-05
Identities = 78/372 (20%), Positives = 120/372 (32%), Gaps = 89/372 (23%)
Query: 502 GILSSLAPSYTWML---FLRGLC------FWALGACFEVLLALIVMP-------TLGWKW 545
GI S+L P Y + LRG G L+A TLGW+
Sbjct: 142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGI----LVAYGFGSGKVSLNNTLGWRI 197
Query: 546 LLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNG--KPMLLGRLVVD 603
L L P +LPES R+ V G+ E+A +L + +G K +L ++D
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELID 257
Query: 604 DSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVV 663
E R S+ S RI + +FL GVV
Sbjct: 258 IKRSIEKRSVQPSWGSL----------------FSSTRRIRRRLFL-----------GVV 290
Query: 664 LMTTELFEASDTRCSESPIAA----ASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP 719
L + F + I A + +F+ + D L + F
Sbjct: 291 LQWFQQF---------TGINAIMYYSPTIFENAGV-STDHAFLVSIIVG--AVNFAFTFV 338
Query: 720 GIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAA 779
IF++++FGR+ + + C+ L I S + G +A VF
Sbjct: 339 A----IFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF---VTGSSKSSGNVAIVFILL 391
Query: 780 Y-------------VYTPEVYPTPLRAVGVGTCSAMARLGAMI----TPYIAQVLLKSSL 822
+ V E++P LR G+ A L I P + + + +
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451
Query: 823 SIAMTVYGVAAL 834
I V L
Sbjct: 452 FIFFGGLNVLGL 463
Score = 29.2 bits (66), Expect = 9.5
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 716 AEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVAR---GII 772
+FA +K + + + + + L V R GI
Sbjct: 84 GFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEM---LIVGRVLLGIG 140
Query: 773 AGVFQAAYV-YTPEVYPTPLRAVGVG 797
G+ A Y E+ P LR
Sbjct: 141 VGIASALVPMYLSEIAPKALRGALTS 166
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 70.1 bits (172), Expect = 8e-13
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 2/190 (1%)
Query: 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQAL 244
++A + L L D I+ + L T LG L+ G +SDR+GR++ L
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVL 65
Query: 245 TLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL 303
+ +L +L A S +L LR L G G + P + L A++ P ++R + + L
Sbjct: 66 LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGL 125
Query: 304 LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP-LLAFACICPWLPESARYHVASGQP 362
L + LGA LL ++ GW+ + LLA LP
Sbjct: 126 LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPA 185
Query: 363 EKALATLREI 372
E+A A L
Sbjct: 186 EEAPAPLVPA 195
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 711 LWTTLAEFPGIFATIF---VIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFV 767
L T A + ++FGR+R + + ++F + L + L V +
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL-VLRVL 94
Query: 768 ARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
+F AA + +P R +G SA LGA + P + +L
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145
Score = 35.1 bits (81), Expect = 0.12
Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 4/127 (3%)
Query: 192 MTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251
L P ++ L + L + G +SDR GR++ L L +LL
Sbjct: 218 FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLL 277
Query: 252 FYYGI---LSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCF 307
+ L SL S W+L L+GF G V P L ++ P ++R L +
Sbjct: 278 ILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTA 337
Query: 308 WALGACF 314
+LG
Sbjct: 338 GSLGGAL 344
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 63.4 bits (154), Expect = 2e-10
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ 242
L W+ D+ + +++++ + ++ +T A + + + +G DRYGR+
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78
Query: 243 ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA-EFLPSKQRAKCV 301
+ VL + AP Y M R ++G +G S Y E P R K
Sbjct: 79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKAS 138
Query: 302 VLLDCFWALGACFEVLLALIVMPTLG--WKWLLALSTAPLLAFACICPWLPES 352
LL +A+GA + +V+P G W+ L +S P++ + +PE+
Sbjct: 139 GLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 60.1 bits (146), Expect = 3e-09
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL---------APSYTWML---F 269
+G ++ GY S+R+GR+ +L + AVL F + S+ + ++
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 270 LRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV------ 322
R + G +G +Y AE P+ R K V F F L+ V
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLV----SFNQFAIIFGQLVVYFVNYFIAR 181
Query: 323 ------MPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
+ T GW+++ A P L F + ++PE+ RY ++ G+ E+A LR+I
Sbjct: 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
Score = 40.8 bits (96), Expect = 0.002
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 540 TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 587
T GW+++ A P L F + ++PE+ RY ++ G+ E+A LR+I
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 58.4 bits (142), Expect = 6e-09
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS---SLAPSYTWMLFLRGLVGFAI 278
LG++ + G ++DR GRK+ L + +V LF G+ S + A + +L R L G +
Sbjct: 61 LGLLPGALLGGRLADRIGRKRIL-IVSVALF--GLFSLATAQAWDFPSLLVARLLTGVGL 117
Query: 279 G-CVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL-ST 336
G +P + L +E + + R V L+ C G ++ ++ W+ + +
Sbjct: 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177
Query: 337 APLLAFACICPWLPESARYHVASGQPEKALATLREIAAD 375
PLL + WLPES + A+G ++ LR + +
Sbjct: 178 GPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216
Score = 43.4 bits (103), Expect = 4e-04
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 762 TVTLFVARGIIAGVF----QAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQV 816
+ + G AG+F Q+ Y P YPT +R GVG A+ RLG+M P +A
Sbjct: 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366
Query: 817 LL 818
LL
Sbjct: 367 LL 368
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 436 TVTLFVARGIIAGVF----QAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQA 490
+ + G AG+F Q+ Y P YPT +R GVG A+ RLG+M P +A
Sbjct: 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366
Query: 491 L 491
L
Sbjct: 367 L 367
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 58.4 bits (142), Expect = 7e-09
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 3/182 (1%)
Query: 191 EMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250
E + +L P D ++ T LG+ L + ++ R R++ L L
Sbjct: 29 EFVPVGLLPPIAA-DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87
Query: 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGC-VPQSVTLYAEFLPSKQRAKCVVLLDCFWA 309
+LS+LAPS+ +L R L G A G + L A +P +R + + L+
Sbjct: 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLT 147
Query: 310 LGACFEVLLALIVMPTLGWKWL-LALSTAPLLAFACICPWLPESARYHVASGQPEKALAT 368
L V L + GW+ LA++ LLA + LP S G L
Sbjct: 148 LATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL 207
Query: 369 LR 370
LR
Sbjct: 208 LR 209
Score = 33.0 bits (76), Expect = 0.60
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV 281
+ + + G ++DR R+ + +L L+ S L L L GFA
Sbjct: 258 IAGFIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPA 317
Query: 282 PQS-VTLYAEFLP 293
Q T A P
Sbjct: 318 LQGLQTRLARLAP 330
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 55.1 bits (133), Expect = 9e-08
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 221 FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG-ILSSLAPSYTWMLFLRGLVGFAI- 278
F G++L G + DRYGR+ A+ + +++LF G + AP Y + R ++G +
Sbjct: 70 FGGLLL-----GAMGDRYGRRLAMVI-SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMA 123
Query: 279 GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338
G S T E P R K L +++GA + +V+P GW+ L + P
Sbjct: 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183
Query: 339 LLAFACICPW----LPESA 353
+ FA W LPE+
Sbjct: 184 -IIFAL---WLRKNLPEAE 198
Score = 30.1 bits (68), Expect = 5.9
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 729 EKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGII----AGVFQAAYVYTP 784
+++GR+ M + V+F + + C + Y TLF+AR +I AG + ++ Y
Sbjct: 80 DRYGRRLAMVISIVLF-SVGTLA--CGFAPGYW--TLFIARLVIGMGMAGEYGSSATYVI 134
Query: 785 EVYPTPLR 792
E +P LR
Sbjct: 135 ESWPKHLR 142
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 51.1 bits (123), Expect = 1e-07
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-C 280
LG ++ S G ++DR+GRK L + + + +L+ + T ++ R L GF
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 281 VPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWL-LALSTAPL 339
+ L A+ P ++R + L+ ALG L ++ LGW+ L L+ L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 340 LAFACICPWLPES 352
AF + LPE+
Sbjct: 129 AAFILLAFLLPET 141
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 44.3 bits (105), Expect = 2e-04
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
Query: 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252
TI+++ P + D + Q T L +S G+++ R+G ++ L L + F
Sbjct: 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-LFLISTFAF 77
Query: 253 YYG-ILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLLDCFWAL 310
G +L +AP+ M+ R + GF G +P S + P ++R + + + W L
Sbjct: 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAI----WGL 133
Query: 311 GACFEVLLALIVMPTLG--------WKWLLALSTAPLLAFACICPWL 349
VL+A + PTLG W+W+ L P+ + +
Sbjct: 134 T----VLVAPALGPTLGGWIIENYHWRWIF-LINVPIGIIVVVVAFF 175
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 43.9 bits (104), Expect = 3e-04
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259
P + D +T T+ LG WG +SDRYGR+ L L + + +
Sbjct: 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88
Query: 260 LAPSYTWMLFLRGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL 318
L+ + +L LR + F S L + P ++ ++ +L AL LL
Sbjct: 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL 148
Query: 319 ALIVMPTLGWKWLLA-LSTAPLLAFACICPWLPESARYHVAS 359
++ L W + A LS A +L A I LPE+ Y
Sbjct: 149 GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI 190
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 43.8 bits (103), Expect = 3e-04
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274
L +I FL ++S FWG ++DR GRK L A+ + +L LA + L LR L+
Sbjct: 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALL 117
Query: 275 GFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALG 311
G G VP + L A +P + WALG
Sbjct: 118 GLLGGFVPNANALIATQVPRNKSG---------WALG 145
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 43.2 bits (102), Expect = 6e-04
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 719 PGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQ- 777
PG + T+F+++ GRK + F I T F+ + +L+ F+A ++A F
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTV---LFFVLGFAYNHLSTHGFLAIYVLAQFFAN 406
Query: 778 -----AAYVYTPEVYPTPLRAVGVGTCSAMARLGAMI 809
++ EV+PT R+ G +A + GA+I
Sbjct: 407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII 443
Score = 41.3 bits (97), Expect = 0.002
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ-----QALTTTIVFLG 223
FG + + G+ + DS ++ +S+++ L + + A +G
Sbjct: 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIG 68
Query: 224 MMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYT------WMLFLRGLVGFA 277
+ F+G+++D+ GRK+ + +++ + S L+P + + F R +G
Sbjct: 69 TLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG 128
Query: 278 IGC-VPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329
IG P S + +EF K R + + G ++ALIV G+K
Sbjct: 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV--LAGFK 179
Score = 30.1 bits (68), Expect = 5.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 426 RYHHVTRAYLTVTLFVARGIIAGVFQ------AAYVYTPEVYPTPLRAVGVGTCSAMARL 479
Y+H L+ F+A ++A F ++ EV+PT R+ G +A +
Sbjct: 385 AYNH-----LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKA 439
Query: 480 GAMI 483
GA+I
Sbjct: 440 GAII 443
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 42.3 bits (100), Expect = 0.001
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ 242
L + + ++ LS +P L D ++ Q + G ++ G++ DR+G ++
Sbjct: 1 LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60
Query: 243 ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCV 301
L + V+ + L + A +Y + LR L+G A + L A + P+ +RA V
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAV 120
Query: 302 VLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338
+ + LG L ++ W+W +
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157
Score = 34.6 bits (80), Expect = 0.22
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 714 TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGII- 772
+ +FPG + ++++FG ++T+AV VI+ +F Q+ A V+L++ R ++
Sbjct: 43 VVGQFPGGW----LLDRFGARKTLAVFIVIWG-----VFTGLQAFAGAYVSLYILRVLLG 93
Query: 773 ---AGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMI-TPYIAQVLLKSSLSIAMTV 828
A F + +P RA V ++ LG +I P + +L+ S A +
Sbjct: 94 AAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII 153
Query: 829 YGVAALKM 836
GV +
Sbjct: 154 EGVLGIIW 161
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 39.9 bits (93), Expect = 0.005
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Query: 192 MTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251
M I I+ + D +T + A T F+G +G ++D++GRK L + +++
Sbjct: 35 MLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK-PLMMWSIVA 92
Query: 252 FYYGI-LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA-EFLPSKQRAKCVVLLDCFWA 309
+ G LS LA + R +VG + + YA E P ++K L +
Sbjct: 93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFG 152
Query: 310 LGACFEVLLALIVMPTL----GWKWLLALSTAPLLAFACICPWLPESARY 355
+G ++A MP+ GW+ + P+L I PES +
Sbjct: 153 IGN----IIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
Score = 29.5 bits (66), Expect = 8.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 218 TIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254
T G +L + WG +DR G K+ ++ ++ F +
Sbjct: 273 TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLF 309
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 38.5 bits (90), Expect = 0.013
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ----ALTLCAVL 250
++ P L + +++ L + + +S G VSDR + L LCA++
Sbjct: 14 FALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIV 73
Query: 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGC-VPQSVTLYAEFLPSKQRAKCVVLLDCFWA 309
+ + S M L L G G P ++ +R V +C
Sbjct: 74 N----LFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHN 129
Query: 310 LGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFACICPWL 349
+G L L + L W W+ + + + IC L
Sbjct: 130 VGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLL 170
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 38.2 bits (89), Expect = 0.017
Identities = 17/86 (19%), Positives = 38/86 (44%)
Query: 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG 255
++L+P L + + A+ T++ +G+ +S G ++D++G + L +L
Sbjct: 23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGF 82
Query: 256 ILSSLAPSYTWMLFLRGLVGFAIGCV 281
++A S + GL +G
Sbjct: 83 TFYAIADSLAALYLTYGLASAGVGIA 108
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.8 bits (86), Expect = 0.044
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 218 TIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA 277
I + +L + W +++ R+G+K+ L +L +L P + LFL +V
Sbjct: 264 LIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAG 323
Query: 278 IG 279
IG
Sbjct: 324 IG 325
Score = 32.6 bits (75), Expect = 1.0
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 710 LLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTAC-VSFLFICTQSRAYLTVTLFVA 768
LL T+A G ++ ++FG+KRT + ++ V F+ S + LF+
Sbjct: 263 LLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGS-----LWLFLV 317
Query: 769 RGIIAGVFQAAYVYTP 784
++AG+ P
Sbjct: 318 LVVLAGIGLGLATLLP 333
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 36.5 bits (85), Expect = 0.051
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252
T+ S L + D+ ++ Q+ L I L L +G+++DR+G ++ L +LL
Sbjct: 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90
Query: 253 YYGILSSLA---PSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWA 309
+ + A PS +L + L+G A + + F P +++ + L A
Sbjct: 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQG---LALGIAGA 147
Query: 310 --LGACFEVLLALIVMPTLGWKWL--LALSTAPLLAFACICPWL 349
LG L+A +V G+ +A LA A + WL
Sbjct: 148 GNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 35.7 bits (83), Expect = 0.11
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 726 FVIEKFGRKRTMAVQFVIFTACVSFLF--ICTQSRAYLTVTLFVARGIIAGVFQAAYVYT 783
+ ++ GR+ + + V+ L + L L + +I G++
Sbjct: 277 ALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSF 336
Query: 784 -PEVYPTPLRAVGVGTCSAMAR-LGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834
PE++PT +R G +A + PYIA L+ + Y +AAL
Sbjct: 337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389
Score = 32.6 bits (75), Expect = 0.75
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 25/188 (13%)
Query: 221 FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY----TW----MLFLRG 272
FL L + +G+ DR GRK+ L + +++ +L L PSY W +L R
Sbjct: 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARL 104
Query: 273 LVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLA----LIVMPTLG 327
+ GF++G LY AE+ P +R F +GA +LLA L++ LG
Sbjct: 105 IQGFSLGGEWGGAALYLAEYAPPGKRG----FYGSFQQVGAPVGLLLAALTVLLLSYLLG 160
Query: 328 ------WKWLLA-LSTAPLLAFACICPW-LPESARYHVASGQPEKALATLREIAADNGKP 379
W W + L +A L+ L E+ + A + +K + E + KP
Sbjct: 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLTKHRKP 220
Query: 380 MLLGRLVV 387
LLG +V
Sbjct: 221 FLLGLGLV 228
Score = 31.9 bits (73), Expect = 1.4
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTL--CAVLLFYYGILSSLAPSYTWMLFLRGLV 274
+ + ++ G +SDR GR+ L + L +L +L S ++ LF ++
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVL 320
Query: 275 GFAI---GCVPQSVTLYAEFLPSKQRA 298
G A+ + E P++ R
Sbjct: 321 GMALIGGMYTGPMGSFLPELFPTEVRY 347
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 35.3 bits (82), Expect = 0.12
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 226 LSSTFWGYVSDRYGRKQALTLCAVLLFYYG-ILSSLAPSYTWMLFLRGLVGFAIGC 280
LS F+G +SDR GR+ + L + +F G +++ A S T ++ + G G
Sbjct: 58 LSQLFYGPLSDRVGRRPVI-LVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV 112
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 33.0 bits (76), Expect = 0.68
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF-YYGILSSLAPS---YTWM 267
Q L+ I LG + F+G ++D +GRK + L L+F + +LA + +M
Sbjct: 29 QMTLSAYI--LGFAIGQLFYGPMADSFGRKPVI-LGGTLVFALAAVACALAQTIDQLIYM 85
Query: 268 LFLRGLVGFAIGCVPQSV 285
FL GL A V ++
Sbjct: 86 RFLHGLAAAAASVVINAL 103
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 32.6 bits (74), Expect = 0.77
Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 22/181 (12%)
Query: 189 SMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248
+E +S+L+P + D I+ + T+ M +S F R+ + L A
Sbjct: 34 IVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA 92
Query: 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCF 307
VLL +L S A S++ +L R +G A+G S +L +P + K + ++
Sbjct: 93 VLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI--- 149
Query: 308 WALGACFEVLLALIVMPTLG------WKWLLALSTAPLLAFACI------CPWLPESARY 355
GA V +AL++ LG W + A ++ CI P LP +
Sbjct: 150 --FGA---VSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH 204
Query: 356 H 356
Sbjct: 205 Q 205
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 32.9 bits (76), Expect = 0.78
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 205 DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL-APS 263
D Q + + + ++ G L WG +SDRYGRK L L + LF G L L S
Sbjct: 35 DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL-LAGLSLFALGSLGMLWVES 93
Query: 264 YTWMLFLR 271
+L LR
Sbjct: 94 AAQLLVLR 101
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 32.4 bits (72), Expect = 0.88
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 7/184 (3%)
Query: 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFW 231
+ L+L L + + L +L L L + FLG + S
Sbjct: 2 RSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRL--LYGLLLSAFFLGYAIGSLLA 59
Query: 232 GYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA-- 289
G + DRYGR++ L + +L +L +LAP+ L L + +G A
Sbjct: 60 GPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119
Query: 290 --EFLPSKQRAKCVVLLD-CFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACIC 346
F + +R V L+ ALG LLA +++ L W W A A LL +
Sbjct: 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLI 179
Query: 347 PWLP 350
L
Sbjct: 180 LVLL 183
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 32.4 bits (74), Expect = 1.0
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 214 ALTT-TIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL----FYYGILSSLAPSYTW-- 266
AL T ++ FL L F+G + D+YGR++ L + V++ F G++ S A W
Sbjct: 59 ALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAP 118
Query: 267 -MLFLRGLV-GFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLD----CFWALGACFEVLLA 319
+L L + GF++G +++ AE+ P ++R LD + LGA VL++
Sbjct: 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178
Query: 320 LIVMPT--LGWKW 330
IV L W W
Sbjct: 179 TIVGEANFLDWGW 191
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 32.7 bits (75), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 353 ARYHVASGQPEKALATLREIAA 374
A+Y++ GQ +KALA L E A
Sbjct: 574 AQYYLGKGQLKKALAILNEAAD 595
Score = 32.7 bits (75), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 568 ARYHVASGQPEKALATLREIAA 589
A+Y++ GQ +KALA L E A
Sbjct: 574 AQYYLGKGQLKKALAILNEAAD 595
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 31.2 bits (71), Expect = 1.1
Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 502 GILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACIC 561
GIL + S W L A +LL L++ + LL L LL +
Sbjct: 3 GILLADLLSLPL-------PLWLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLG 55
Query: 562 ---PWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLL 618
+ H+ G+ + G + L V+ +VG V +
Sbjct: 56 LRAYRRAANDLSHLLDGKEVTVEGVVASTPEVTGDRVRF-VLEVERLLVGGDTKPVSGKV 114
Query: 619 SVQLRTTSLLLWYI 632
V +R SL
Sbjct: 115 LVYVRKDSLPKLRP 128
Score = 29.3 bits (66), Expect = 6.0
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 307 FWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACIC---PWLPESARYHVASGQPE 363
W L A +LL L++ + LL L LL + + H+ G+
Sbjct: 16 LWLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAANDLSHLLDGKEV 75
Query: 364 KALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYI 417
+ G + L V+ +VG V + V +R SL
Sbjct: 76 TVEGVVASTPEVTGDRVRF-VLEVERLLVGGDTKPVSGKVLVYVRKDSLPKLRP 128
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 32.2 bits (74), Expect = 1.2
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 5/106 (4%)
Query: 720 GIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQ-- 777
IF +++E KR + F + V+ L + S A ++ +FV G+++G+
Sbjct: 58 SIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF-SHSLALFSIAMFVL-GVVSGITMSI 115
Query: 778 AAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSLS 823
++ T VY R + + + MI P IA LL S+
Sbjct: 116 GTFLIT-HVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE 160
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 32.4 bits (74), Expect = 1.2
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 222 LGMMLSSTFWGYV---------SDRYGRKQALTLCAVLLFYYGILS--SLAPSYTWMLFL 270
G++LSS F+G + + +Y K ++ + L I+ + ++F
Sbjct: 78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFC 137
Query: 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328
R + G A G V P + + ++ P K+R++ + + + LG I +P GW
Sbjct: 138 RVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLG-------TFIFLPISGW 189
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 31.9 bits (73), Expect = 1.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 213 QALTTTIVF-LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLR 271
A+ T +F +G ++ S WG++SD ++AL C L L + + ++L
Sbjct: 295 DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354
Query: 272 GLVGFAIG 279
L FA+G
Sbjct: 355 SL--FALG 360
>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional.
Length = 434
Score = 31.8 bits (73), Expect = 1.7
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 219 IVFLGMMLSSTFW----GYVSDRYGRKQALTLCAVL--LFYYGILSSL--APSYTWML 268
+V L + +S+ W G +SDR GR+ L VL L Y LS L APS+ ML
Sbjct: 278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML 335
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 31.4 bits (72), Expect = 1.9
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 499 FYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALI--VMPTLGWKWLLALSTAPLLA 556
L +L W+L L G+ LG F L + L P L
Sbjct: 194 LSIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKKLPRELRVLLPGLL 253
Query: 557 FACICPWLPESAR 569
+ LPE+
Sbjct: 254 IGPLGLLLPEALG 266
>gnl|CDD|129981 TIGR00903, 2A0129, major facilitator 4 family protein. This family
of proteins are uncharacterized proteins from archaea.
This family includes proteins from Archaeoglobus
fulgidus and Aeropyrum pernix [Transport and binding
proteins, Other].
Length = 368
Score = 31.5 bits (71), Expect = 2.2
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 9/145 (6%)
Query: 214 ALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP-SYTWMLFLRG 272
A+T FL + + S G + DR K+ ++ F L P +Y W+L +
Sbjct: 32 AITYPAAFLALTIPS---GLLLDR-AFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332
L + + A + ++R + LL LG F + L + G + L+
Sbjct: 88 LAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI 147
Query: 333 ----ALSTAPLLAFACICPWLPESA 353
A++ A ++ P LP A
Sbjct: 148 IPIAAVAAAGIILVLAALPALPFQA 172
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 31.6 bits (72), Expect = 2.2
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 513 WMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESAR 569
+ R L F L AL P W WL S APLL P E
Sbjct: 8 QWVLGRPARRLLLALVFGALFAL-AFPPPDWWWLAWFSLAPLLWLVRGAPTSWEGLA 63
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 31.1 bits (71), Expect = 2.7
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259
P + D + Q + ++ GM + F G ++DR GRK A L +L S
Sbjct: 27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS 86
Query: 260 LAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLLD 305
LA + + L R L G G C + + + L ++RAK + LL+
Sbjct: 87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLN 133
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 30.1 bits (68), Expect = 3.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 30 VRGKSAASKYEDLDGPDKSSSD---------GGRRGSGGG 60
+ G+ K++ DG D+ S++ GGR GSGGG
Sbjct: 78 IEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGG 117
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 30.7 bits (70), Expect = 3.7
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 720 GIFATIFVIEKFGRKRTMAVQFVIFT-ACVSFLFICTQSRAYLTVTLFVARGIIAGVFQA 778
G+ +++KFG+K+ + ++ + F +V L V IIAGV
Sbjct: 288 GLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT-----PAGSVVLIVVALIIAGVGTG 342
Query: 779 A 779
Sbjct: 343 I 343
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 30.1 bits (68), Expect = 5.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 221 FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYT---W-----MLFLRG 272
FL L +G+ DR GRK+ L L ++ L L PS++ W ++ LR
Sbjct: 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRA 133
Query: 273 LVGFAIG 279
+ GFA+G
Sbjct: 134 IQGFAVG 140
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 30.0 bits (68), Expect = 5.3
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 11/161 (6%)
Query: 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ----ALTLCAVLLF 252
IL P L + +T ++ +L F G + S G + + G K L L AV
Sbjct: 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93
Query: 253 YYGILSSLAPSYTWMLFLRGL--VGFAIGCVPQSVTLYAEFL-PSKQRAKCVVLLDCFWA 309
+ A S ++ FL L + IG + + Y L + A + L F
Sbjct: 94 ---LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNG 150
Query: 310 LGA-CFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 349
LGA +L + +++ + A A A A +
Sbjct: 151 LGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFP 191
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 30.0 bits (67), Expect = 5.5
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272
Q L +T+ +G +S G ++DR+GR+ + ++ I+ A + +L
Sbjct: 80 QGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMT 139
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQR 297
L+G A G S E + +K +
Sbjct: 140 LLGVAAGPAGASPLFIGELMSNKTK 164
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 30.1 bits (68), Expect = 5.6
Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 17/190 (8%)
Query: 179 LYTGLCWMADSMEMTILSI--LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD 236
L G+ +A ++ + S+ L P + ++ L T + L + + +++
Sbjct: 1 LILGIVLIALNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR 60
Query: 237 RYGRKQALTLCAVLLFYYGILSSLAPSYTWMLF---LRGLVGFAIGCVPQSVTLYAEFLP 293
R+G ++++ +LL GIL AP T +LF VG AI V + +F
Sbjct: 61 RFGEERSVAA-GLLLIAAGILIRSAP-GTALLFAGTALIGVGIAIINVLLPSLIKRDF-- 116
Query: 294 SKQRAKCVVLLDCFWALGACFEVLLALIVMPTL----GWKWLLALSTAPLLAFACICPWL 349
+ V L+ +++ LA L G W AL+ L A + W+
Sbjct: 117 ----PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWI 172
Query: 350 PESARYHVAS 359
P+ R A+
Sbjct: 173 PQVRRRVAAN 182
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 30.3 bits (69), Expect = 5.7
Identities = 60/338 (17%), Positives = 114/338 (33%), Gaps = 85/338 (25%)
Query: 212 QQALTTTIV----FLGMMLSSTFWGYVSDRYGRKQALTLCAVL--LFYYGILSSLAPSYT 265
+Q + T IV L +L S+ G+++D++ + + + + + I+ + +
Sbjct: 44 EQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWF 103
Query: 266 WMLFLRGLVGFAIGCVPQSVTLYA--------EFLPSKQ--RAKCVVLLDCFWAL----- 310
W+ F V F +G QS +Y+ E + + RA ++ A+
Sbjct: 104 WLAFA---VTFLLGA--QS-AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA 157
Query: 311 --GACFEVLLALIVMPTLGWKWLLALSTAPLLAFACI-------CPWLPESARYHVASGQ 361
FE + LG L LLA A + P +P +A
Sbjct: 158 LFSFLFESVNGNTPSEILGRIAPAGLV---LLAVAVLGLIFAYRLPKVPAAA----PEVF 210
Query: 362 PEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVS 421
+K + + N K + R++ L++ + L Y W++S
Sbjct: 211 DKKKYLFPKLLW-RNLKLLRSDRVL---------------WLAI------IGLSYFWFIS 248
Query: 422 KV--------ETRYHHVTRAYLT--VTLFVARGIIAGVFQAAYV--YTPEVYPTPLRAVG 469
++ + + + A GI G A + E+ PL A+G
Sbjct: 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALG 308
Query: 470 VGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSL 507
+ + A +L VL F +G + L
Sbjct: 309 LALSLFLL--------PTAPSLASVLVLFFLFGFSAGL 338
>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane].
Length = 535
Score = 30.1 bits (68), Expect = 6.4
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 490 ALTLCAVL---LFYYGILSSLAPSYTWMLFL--------RGLCFWALGACFEVLLALIVM 538
AL L L Y + + + +L L +G L +LL L++
Sbjct: 139 ALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLLPL---ILLLLLLA 195
Query: 539 PTLGWKWLLA-LSTAPLLAFACICPWL 564
P L L LL + PWL
Sbjct: 196 PRLRRLLRDLRLWLGLLLGLLPVLPWL 222
>gnl|CDD|225463 COG2911, COG2911, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1278
Score = 29.6 bits (67), Expect = 8.8
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 321 IVMPTLGWKWLL----ALSTAPLLAFACICPWLPESARYHVASGQPEKALATL-REIAAD 375
+WL L LL + L + + L L E +
Sbjct: 1 KPPIKRKMRWLKKASAGLLAVILLLVLALGGLLGTTPGLRYGLNAIDSWLPGLDIEKVSG 60
Query: 376 NGKP-MLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLW 415
+ + +LLG + D V + G + LL++ LR LW
Sbjct: 61 SLRGGLLLGDVRYDRLGVADRAG--QLLLALDLR----CLW 95
Score = 29.6 bits (67), Expect = 8.8
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 536 IVMPTLGWKWLL----ALSTAPLLAFACICPWLPESARYHVASGQPEKALATL-REIAAD 590
+WL L LL + L + + L L E +
Sbjct: 1 KPPIKRKMRWLKKASAGLLAVILLLVLALGGLLGTTPGLRYGLNAIDSWLPGLDIEKVSG 60
Query: 591 NGKP-MLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLW 630
+ + +LLG + D V + G + LL++ LR LW
Sbjct: 61 SLRGGLLLGDVRYDRLGVADRAG--QLLLALDLR----CLW 95
>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family. This
group resembles the zinc-dependent alcohol dehydrogenase
and has the catalytic and structural zinc-binding sites
characteristic of this group. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines. Other MDR members have only a catalytic zinc,
and some contain no coordinated zinc.
Length = 384
Score = 29.4 bits (66), Expect = 8.9
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 351 ESARYHV-ASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
A V A+G P + + + A NGK + +GR + E
Sbjct: 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEV 319
Score = 29.4 bits (66), Expect = 8.9
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 566 ESARYHV-ASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 610
A V A+G P + + + A NGK + +GR + E
Sbjct: 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEV 319
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 29.4 bits (66), Expect = 9.6
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 225 MLSSTFWGYVSDRYG-RKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV-GFAIGCVP 282
+ S SD G RK + C +L +L + +Y +L L L+ FA P
Sbjct: 47 IAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANP 106
Query: 283 QSVTLYAE 290
Q L E
Sbjct: 107 QLFALARE 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,429,454
Number of extensions: 4251534
Number of successful extensions: 5612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5523
Number of HSP's successfully gapped: 218
Length of query: 837
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 732
Effective length of database: 6,280,432
Effective search space: 4597276224
Effective search space used: 4597276224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.0 bits)