RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1725
(837 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 76.6 bits (188), Expect = 3e-14
Identities = 116/660 (17%), Positives = 182/660 (27%), Gaps = 272/660 (41%)
Query: 254 YGIL--SSLAPSYTWML-------FLRGLV----GFAIGCVPQSVT-LYAEFL------- 292
+G L L P+ ++ + F + L GFA P + L +FL
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 293 -PSKQRAKCVVLLDCFWALGACFEVLL------ALIVMPTLGWKWLLALSTAPLLAF--- 342
PSK VL C C+ L AL LL + L+
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAK-------LLQENDTTLVKTKEL 122
Query: 343 ------ACIC-----PWLPESARYHVAS-----------GQ--PEKALATLREI------ 372
A I SA + GQ + LR++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 373 --------AADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVE 424
+A+ L L+ + + ++L W +
Sbjct: 183 LVGDLIKFSAE-----TLSELIRTTLDAEKVFTQGLNILE-------------W-LENPS 223
Query: 425 TRYHHVTRAYLTVTLFVARGIIAGVFQAA-YVYTPEVY---PTPLRAV--GVGTCSAMAR 478
+ YL +++ ++ +I GV Q A YV T ++ P LR+ G S
Sbjct: 224 NT---PDKDYL-LSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--- 275
Query: 479 LGAMITP-YIAQALT---------LCAVLLFYYGI-------LSSLAPSY---------- 511
++T IA+ + +LF+ G+ +SL PS
Sbjct: 276 --GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 512 --TWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPE--- 566
+ ML + L E + + LP
Sbjct: 334 VPSPMLSISNLTQ-------EQVQDYV---------------------NKTNSHLPAGKQ 365
Query: 567 -------SARYHVASGQPEKALA----TLREIAADNGKPMLLGRLVVDDSMVGEHRGRVK 615
A+ V SG P+ +L TLR+ A +G D S + R K
Sbjct: 366 VEISLVNGAKNLVVSGPPQ-SLYGLNLTLRKAKAPSGL---------DQSRI-PFSER-K 413
Query: 616 DLLSVQ-LRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMT--TELFEA 672
S + L S P FH L+ ++L
Sbjct: 414 LKFSNRFLPVAS-------------P---------FHSH----------LLVPASDLINK 441
Query: 673 SDTRCSESPIAAASGMFKPV-DTCT-ADCRQLN---TQDYMDLL------WTTLAEFPGI 721
D + A PV DT +D R L+ ++ +D + W T +F
Sbjct: 442 -DLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK-- 497
Query: 722 FATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARG---IIAGVFQA 778
AT + FG + LT G I+AG
Sbjct: 498 -ATHILD--FGPGGASGL-------------------GVLTHRNKDGTGVRVIVAGTLDI 535
Score = 49.7 bits (118), Expect = 4e-06
Identities = 66/408 (16%), Positives = 118/408 (28%), Gaps = 158/408 (38%)
Query: 148 MNSVSIVPDDTFTVSQAVNAFGF-GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDW 206
+ + S PD + +S + + G Q L+ Y + +P
Sbjct: 219 LENPSNTPDKDYLLSIPI-SCPLIGVIQ--LAHYVVTAKLLG---------FTPG----- 261
Query: 207 QITRYQQALTTT----IVFLGMMLSSTFWGYVSDRYGR--KQALTLCAVLLFYYGI---- 256
++ Y + T + + + + + W + + ++A+T+ LF+ G+
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDS-W----ESFFVSVRKAITV----LFFIGVRCYE 312
Query: 257 ---LSSLAPSY------------TWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCV 301
+SL PS + ML + L V V LP+ ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQ---- 365
Query: 302 VLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQ 361
V ++L+ A+ V SG
Sbjct: 366 --------------VEISLV-----------------------------NGAKNLVVSGP 382
Query: 362 PEKALA----TLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQ-LRTTSLLLWY 416
P+ +L TLR+ A +G D S + R K S + L S
Sbjct: 383 PQ-SLYGLNLTLRKAKAPSGL---------DQSRI-PFSER-KLKFSNRFLPVAS----- 425
Query: 417 IWYVSKVETRYH--HVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCS 474
+H + A + + + ++ F A + P VY T S
Sbjct: 426 ---------PFHSHLLVPASDLINKDLVKNNVS--FNAKDIQIP-VYDT-------FDGS 466
Query: 475 AMARLGAMITPYIAQALTLCAV-------------LLFYYGILSSLAP 509
+ L I+ I + V L F G S L
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Score = 48.9 bits (116), Expect = 7e-06
Identities = 98/581 (16%), Positives = 166/581 (28%), Gaps = 194/581 (33%)
Query: 333 ALSTAPL-LAFACI-CPWL-PESARYHVASGQPEKALATL----REIAADNGKPM----L 381
A ST PL L+ + L P ++ + +AS E+ L AAD+ +P L
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTAS-FFIASQLQEQFNKILPEPTEGFAADD-EPTTPAEL 60
Query: 382 LGRLV--VDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRY------HHVTRA 433
+G+ + V + G+ +L+ L L E Y H +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLN-------LCLTEF------ENCYLEGNDIHALAAK 107
Query: 434 YL---TVTLFVARGIIAGVFQA-AYVYTPEVYPTP---LRAVGVGTCSAMARLG------ 480
L TL + +I A P + RAVG G +A G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 481 ----------AMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFE 530
+ + A L L +F +G
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSE---LIRTTLDAE-KVFTQG---------LN 214
Query: 531 VLLALIVMPTLGWKWLLALSTAPLLAFACICPW-LP-----ESARYHVASGQPEKALATL 584
+L +WL S P + P P + A Y V + L
Sbjct: 215 IL-----------EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 585 REIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLS---VQLRTTSLLLWYIWYVSKSYPS 641
R L G G + L++ + + W +S+
Sbjct: 264 RSY--------LKGAT-----------GHSQGLVTAVAIAETDS----W------ESFFV 294
Query: 642 RINKAV-FLFHRTVCAFCYYGVVLMTTELFEASDTRCSE---SPIAAASGMFKPVDTCTA 697
+ KA+ LF V + Y + + E S +E SP+ + S + +
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQE------ 347
Query: 698 DCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVI-------FTACVSF 750
Q+ QDY++ + L + ++ G K V+ + ++
Sbjct: 348 ---QV--QDYVNKTNSHLPAGKQVEISLVN----GAK-----NLVVSGPPQSLYGLNLTL 393
Query: 751 LFICT-----QSRA------------YLTVTL-F---------------VARGIIAGVFQ 777
QSR +L V F + + ++ F
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS--FN 451
Query: 778 AAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
A + P VY T S + L I+ I ++
Sbjct: 452 AKDIQIP-VYDT-------FDGSDLRVLSGSISERIVDCII 484
Score = 34.6 bits (79), Expect = 0.17
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 51/159 (32%)
Query: 115 VP-DGRCPQIEAK--AISCPFQWP--SSGENMMGQELEMNSVSIVPDD-TFTVSQAVNAF 168
+P R + + ++ PF +++ ++L N+VS D V
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV------- 459
Query: 169 GFGKFQAKLSLYTG--LCWMADSMEMTILSILSPAL---HCDWQITRYQQALTTTIVF-- 221
+ G L ++ S I + + W+ T +A T + F
Sbjct: 460 --------YDTFDGSDLRVLSGS----ISERIVDCIIRLPVKWETTTQFKA-THILDFGP 506
Query: 222 -----LGMM-------------LSSTFWGYVSDRYGRKQ 242
LG++ ++ T D YG KQ
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 33.9 bits (77), Expect = 0.27
Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 78/183 (42%)
Query: 56 GS---GGGENMMGQELEMNSVSIVPDGR--WPQIEAKASSCPFQW---------PSR--- 98
GS G MG +L S + W + + + + P
Sbjct: 1625 GSQEQG-----MGMDLYKTS----KAAQDVWNRADNHFKDT-YGFSILDIVINNPVNLTI 1674
Query: 99 ---GENMMGQELEMNSVSIV----PDGRC------PQIEAKAISCPFQWPSSGENMMGQE 145
GE G+ + N +++ DG+ +I + S F+ ++
Sbjct: 1675 HFGGEK--GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR---------SEK 1723
Query: 146 LEMNSVSIVPDDT-------FTVSQAVNAF------GF---GKFQAKLSL--YTGLCWMA 187
+++ T + +A AF G A SL Y L +A
Sbjct: 1724 GLLSA-------TQFTQPALTLMEKA--AFEDLKSKGLIPADATFAGHSLGEYAALASLA 1774
Query: 188 DSM 190
D M
Sbjct: 1775 DVM 1777
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 53.9 bits (130), Expect = 1e-07
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 7/160 (4%)
Query: 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ----ALTLCA 248
++ P L +R + + + S G VSDR + L L A
Sbjct: 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103
Query: 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLLDCF 307
++ + G + S M L L G+ G P + K+R V + +C
Sbjct: 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163
Query: 308 WALGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFACIC 346
+G LL L+ M W L + + A
Sbjct: 164 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 203
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 12/151 (7%)
Query: 214 ALTTTIVFLGMMLSSTFWGYVSDRYGRKQ-----ALTLCAVLLFYYGILSSLAPSYTWML 268
+ + + + G++SD+ R + V + + A + T +
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350
Query: 269 FLRGLVGFAIGCVPQSV--TLYAEFLPSKQRAKCVVLLDCFWALGACF--EVLLALIVMP 324
++GF I P + E P K F LG ++ V
Sbjct: 351 ICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409
Query: 325 TLGWKWL-LALSTAPLLAFACICPWLPESAR 354
GW + + +LA + + R
Sbjct: 410 F-GWDGGFMVMIGGSILAVILLIVVMIGEKR 439
Score = 30.4 bits (69), Expect = 3.0
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 9/99 (9%)
Query: 726 FVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPE 785
V ++ + + +I A V +FV + G FQ + P
Sbjct: 84 SVSDRSNPRVFLPA-GLILAAAVMLFMGFVPWATSSIAVMFVLL-FLCGWFQGM-GWPPC 140
Query: 786 V------YPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
+ R V + +G I P + + +
Sbjct: 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 45.3 bits (108), Expect = 6e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG-ILSSLAPSYTWMLFLRGL 273
L +S F+G +SDR GR+ + L + +F +++ S T ++ +
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVTTSSLTVLIAASAM 97
Query: 274 VGFAIGC 280
G G
Sbjct: 98 QGMGTGV 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 3e-04
Identities = 67/468 (14%), Positives = 135/468 (28%), Gaps = 152/468 (32%)
Query: 92 PFQ--WPSRGENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMN 149
F+ W + + +V + QI+ W S ++ +L ++
Sbjct: 181 DFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPN-------WTSRSDHSSNIKLRIH 228
Query: 150 SVS----------------IVPDDTFTV--SQAVNAFGFGKFQAKLSLYTGLCWMAD--- 188
S+ +V + V ++A NAF K+ L T + D
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLS---CKILLTTRFKQVTDFLS 282
Query: 189 -------SMEMTI--------LSILSPALHCDWQITRYQQALTT---TIVFLGMMLS--- 227
S++ S+L L C Q ++ LTT + + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGL 341
Query: 228 --STFWGYV-SDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQS 284
W +V D+ + L+ L P+ +F R ++ P S
Sbjct: 342 ATWDNWKHVNCDKL--TTIIESS---------LNVLEPAEYRKMFDR----LSV--FPPS 384
Query: 285 VTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLA------LSTAP 338
+ P+ LL W +V++ V+ L L+ + P
Sbjct: 385 AHI-----PTI-------LLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIP 429
Query: 339 LLAF-----------------------ACICPW--LPESAR--------YHVASGQPEKA 365
+ +P +H+ + + +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 366 LATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVET 425
+ R + D L + + DS G + + L QL+ Y Y+ +
Sbjct: 490 MTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQ-QLKF------YKPYICDNDP 539
Query: 426 RYHHVTRAYLTVTLFVARGIIAG----VFQAAYVYTPE-VYPTPLRAV 468
+Y + A L + +I + + A + E ++ + V
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 40.2 bits (93), Expect = 0.003
Identities = 65/417 (15%), Positives = 111/417 (26%), Gaps = 104/417 (24%)
Query: 389 DSMVGEHRGRVKDLLSVQL---------RTTSLLLWYIWYVSKVETRY-----HHVTRAY 434
D GEH+ + KD+LSV + + I +SK E + V+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTL 65
Query: 435 LTVTLFVARG------IIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA 488
+++ + V + Y + T R + T YI
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----------RMYIE 114
Query: 489 QALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLAL-----IV---MPT 540
Q L Y A R + L + LL L ++ +
Sbjct: 115 QRDRL-------YNDNQVFAKYNVS----RLQPYLKLR---QALLELRPAKNVLIDGVLG 160
Query: 541 LGWKWLLALSTAPLLAFACICP----WLPESARYHVASGQPEKALATLREIAAD---NGK 593
G K +AL C WL + E L +I +
Sbjct: 161 SG-KTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 594 PMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLL----LWYIWYVSK-SYPSRI----- 643
+L + + ++ LL + LL + + + +I
Sbjct: 219 HSSNIKLRIHSI-----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 644 NKAVFLFHRTVCAFCYYGVVLM----------TTELF-EASDTRCSESPIAAASGMFKP- 691
K V F + A + L L + D R + P + P
Sbjct: 274 FKQVTDF---LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PR 328
Query: 692 -VDTCTADCRQ-LNTQDYMDLLW--TTLAEFPGIFATIFVIEKFGRKRTMAVQFVIF 744
+ R L T D W + I + + + R M + +F
Sbjct: 329 RLSIIAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Score = 39.8 bits (92), Expect = 0.004
Identities = 77/530 (14%), Positives = 148/530 (27%), Gaps = 184/530 (34%)
Query: 169 GFGK----------FQAKLSLYTGLCWM------ADSMEMTILSILSPALHCDW-QITRY 211
G GK ++ + + + W+ + + +L L + +W + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLR 271
+ I + L S Y LL +L ++ + W
Sbjct: 220 SSNIKLRIHSIQAELRRLL---KSKPYEN--------CLL----VLLNVQNAKAWN---- 260
Query: 272 GLVGFAIGC---V---PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV--LLALIVM 323
F + C + + VT +FL + + L L EV LL
Sbjct: 261 ---AFNLSCKILLTTRFKQVT---DFLSAATTTH-ISLDHHSMTLTP-DEVKSLLL---- 308
Query: 324 PTLGWKWL---------LALSTAPLLAFACICPWLPESARYHVASGQP-----EKALATL 369
K+L L+T P + I ES R +A+ L T+
Sbjct: 309 -----KYLDCRPQDLPREVLTTNPR-RLSII----AESIRDGLATWDNWKHVNCDKLTTI 358
Query: 370 REIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLL----SVQLRTTSL-LLWYIWYVSKVE 424
E + + +P E+R L S + T L L+W + V K +
Sbjct: 359 IESSLNVLEP-------------AEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSD 403
Query: 425 TRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMIT 484
+ V ++ + + + P +Y L +
Sbjct: 404 VM--------VVVNKLHKYSLVEKQPKESTISIPSIY---LE----------------LK 436
Query: 485 PYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWK 544
+ L ++ +Y I + +L + +G
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG------------------ 478
Query: 545 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDD 604
+H+ + + + + R + D L + + D
Sbjct: 479 -------------------------HHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHD 510
Query: 605 SMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYP--SRINKAV--FLF 650
S G + + L QL+ Y Y+ + P R+ A+ FL
Sbjct: 511 STAWNASGSILNTLQ-QLKF------YKPYICDNDPKYERLVNAILDFLP 553
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.001
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 30/57 (52%)
Query: 163 QAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTI 219
QA+ K QA L LY DS +PAL A+ T+
Sbjct: 20 QALK-----KLQASLKLYA-----DDS---------APAL-----------AIKATM 46
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 40.3 bits (94), Expect = 0.002
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 10/137 (7%)
Query: 194 ILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ------ALTLC 247
+ IL P + +T +Q L + + G + G + + K L
Sbjct: 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103
Query: 248 AVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFL-PSKQRAKCVVLLDC 306
LF+ ++ +YT L ++ +GC+ + + L P + L
Sbjct: 104 GAALFW---PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT 160
Query: 307 FWALGACFEVLLALIVM 323
F + GA V+ ++
Sbjct: 161 FNSFGAIIAVVFGQSLI 177
>3efa_A Putative acetyltransferase; structural genom 2, protein structure
initiative, midwest center for structu genomics, MCSG;
2.42A {Lactobacillus plantarum WCFS1}
Length = 147
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 351 ESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGR 398
+ Y V QP+ + TLR + M GR+ +RG
Sbjct: 44 DQCEYAVLYLQPDLPITTLR-LEPQADHVMRFGRVCTRK----AYRGH 86
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 566 ESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGR 613
+ Y V QP+ + TLR + M GR+ +RG
Sbjct: 44 DQCEYAVLYLQPDLPITTLR-LEPQADHVMRFGRVCTRK----AYRGH 86
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 29.9 bits (67), Expect = 4.2
Identities = 16/161 (9%), Positives = 38/161 (23%), Gaps = 11/161 (6%)
Query: 219 IVFLGMMLSSTFWGYVSDRYGRKQ--------ALTLCAVLLFYYGILSSLAPSYTWMLFL 270
+ L +L +G +SD+ G ++ L + A + +
Sbjct: 51 AISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110
Query: 271 RGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329
+GF P + + F +G + I+
Sbjct: 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM--FGCVGWALGASIVGIMFTINNQF 168
Query: 330 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLR 370
S L+ + ++ + +
Sbjct: 169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS 209
Score = 29.1 bits (65), Expect = 6.2
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 710 LLWT--TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFV 767
+ T L +F +I + G K + + I + + T + + +
Sbjct: 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH 322
Query: 768 ARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMAR-LGAMITPYIAQVL 817
+ + + Y + A C + L + +A +
Sbjct: 323 MFE-VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,794,352
Number of extensions: 780446
Number of successful extensions: 1751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1734
Number of HSP's successfully gapped: 35
Length of query: 837
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 735
Effective length of database: 3,853,851
Effective search space: 2832580485
Effective search space used: 2832580485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.4 bits)