RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1725
         (837 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 54/421 (12%), Positives = 121/421 (28%), Gaps = 20/421 (4%)

Query: 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSST 229
           + + + ++ L     + A  +     ++  P L  +   +R       + + +    S  
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77

Query: 230 FWGYVSDRYGRKQ----ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA-IGCVPQS 284
             G VSDR   +      L L A ++ + G +     S   M  L  L G+      P  
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 285 VTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL-ALIVMPTLGWKWLLALSTAPLLAFA 343
                 +   K+R   V + +C   +G     LL  L +     W   L +     +  A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 344 CICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLL 403
                +             E+      +   +  +  L  + +    ++         + 
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 257

Query: 404 SVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPT 463
           +V +      +         E ++  + ++     L+   GI   +              
Sbjct: 258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 317

Query: 464 PLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRG---- 519
               V   T   +A +   + P     + +  +++  + I   +       L L      
Sbjct: 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377

Query: 520 --------LCFWALGACFEVLLALIVMPTLGWKW-LLALSTAPLLAFACICPWLPESARY 570
                   L  +  G+     +    +   GW    + +    +LA   +   +    R 
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437

Query: 571 H 571
           H
Sbjct: 438 H 438



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 714 TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICT---QSRAYLTVTLFVARG 770
           ++A     F    V ++   +  +    ++  A + F+        S A + V LF+   
Sbjct: 69  SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128

Query: 771 IIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
                +          +    R   V   +    +G  I P +  + +
Sbjct: 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 56.3 bits (134), Expect = 7e-09
 Identities = 35/403 (8%), Positives = 93/403 (23%), Gaps = 18/403 (4%)

Query: 176 KLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVS 235
              L+    +                LH    I++    +    + L  +L    +G +S
Sbjct: 11  MFGLFFFFYFFIMGA---YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67

Query: 236 DRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA------ 289
           D+ G ++ L      +        +      + +   +     G                
Sbjct: 68  DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA 127

Query: 290 -EFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348
                S++          F  +G      +  I+            S   L+    +   
Sbjct: 128 FIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA 187

Query: 349 LPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLR 408
             ++      +       +      A           +    +             V  +
Sbjct: 188 KTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT------YDVFDQ 241

Query: 409 TTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAV 468
             +      +   +  TR          +           +          +    + +V
Sbjct: 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV 301

Query: 469 GVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPS--YTWMLFLRGLCFWALG 526
            +   S       ++         +  +L+  +  ++S         +  +    F  L 
Sbjct: 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361

Query: 527 ACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESAR 569
             F  +LA  +  ++G++    +     L F  I  +      
Sbjct: 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404


>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 395

 Score = 28.0 bits (62), Expect = 5.6
 Identities = 33/171 (19%), Positives = 50/171 (29%), Gaps = 36/171 (21%)

Query: 307 FWALGACF------EVLLALIVMPTLGWKWLLALSTAPLLAFACIC---PWLPESARYHV 357
            WALGA         ++ A  +   LG      +ST   LA A        + +      
Sbjct: 105 VWALGANLGINDLASIIEANHMCDELGLD---TISTGGTLATAMELYEKGHIKDEELGDA 161

Query: 358 AS---GQPEKALATLREIAADNGKPMLLGRLVVDDSM-VGEHRGRVKDLLSVQLRTTSLL 413
                G  E     + +IA   G     G  + + S  + E  G  +             
Sbjct: 162 PPFRWGNTEVLHYYIEKIAKREG----FGDKLAEGSYRLAESYGHPE------------- 204

Query: 414 LWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP 464
                 V K+E   +   R      L  A     G     Y+ +PE+   P
Sbjct: 205 --LSMTVKKLELPAYD-PRGAEGHGLGYATNNRGGCHIKNYMISPEILGYP 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0409    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,065,921
Number of extensions: 140471
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 10
Length of query: 837
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 744
Effective length of database: 1,130,706
Effective search space: 841245264
Effective search space used: 841245264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)