Query psy17252
Match_columns 1076
No_of_seqs 399 out of 1321
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 17:14:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 1.3E-62 2.8E-67 529.2 17.7 250 748-1050 17-270 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 5.9E-61 1.3E-65 512.6 15.4 234 758-1046 2-250 (250)
3 PTZ00251 fatty acid elongase; 100.0 1.9E-58 4.2E-63 499.4 12.7 236 750-1045 14-269 (272)
4 KOG3072|consensus 100.0 1.4E-50 3.1E-55 433.5 11.3 234 752-1042 30-269 (282)
5 KOG3187|consensus 93.8 1.1 2.5E-05 49.0 13.6 82 904-987 60-142 (223)
6 KOG3030|consensus 89.6 6 0.00013 45.7 13.9 53 695-757 13-66 (317)
7 PF15042 LELP1: Late cornified 82.1 0.8 1.7E-05 44.2 1.8 11 608-618 98-108 (111)
8 PLN02838 3-hydroxyacyl-CoA deh 81.7 6.3 0.00014 43.3 8.7 32 955-987 110-142 (221)
9 COG0558 PgsA Phosphatidylglyce 71.0 23 0.0005 37.5 9.2 100 894-1000 43-152 (192)
10 KOG3071|consensus 70.9 2.6 5.6E-05 47.6 2.2 70 981-1050 194-266 (274)
11 PF15042 LELP1: Late cornified 69.5 2.9 6.4E-05 40.5 1.9 14 602-615 96-109 (111)
12 PF07851 TMPIT: TMPIT-like pro 66.5 13 0.00029 43.2 6.7 121 914-1039 171-318 (330)
13 PF04387 PTPLA: Protein tyrosi 59.4 10 0.00022 39.8 3.9 80 904-988 5-88 (164)
14 TIGR00892 2A0113 monocarboxyla 56.1 30 0.00065 40.7 7.4 38 1023-1060 412-449 (455)
15 KOG1025|consensus 55.4 7.9 0.00017 49.6 2.5 19 893-911 799-817 (1177)
16 KOG4258|consensus 45.6 25 0.00054 45.2 4.7 14 1026-1039 715-728 (1025)
17 PF00757 Furin-like: Furin-lik 44.2 13 0.00027 38.6 1.6 14 586-599 116-129 (149)
18 PF04247 SirB: Invasion gene e 36.5 31 0.00068 34.7 3.0 66 704-774 10-83 (123)
19 PF14843 GF_recep_IV: Growth f 36.4 48 0.001 33.5 4.3 12 605-616 115-126 (132)
20 PRK14485 putative bifunctional 33.7 5.7E+02 0.012 33.2 13.8 20 1019-1038 440-459 (712)
21 COG5548 Small integral membran 32.1 29 0.00063 33.9 1.9 18 773-790 65-82 (105)
22 PF14342 DUF4396: Domain of un 29.5 1.4E+02 0.0031 30.9 6.4 49 952-1000 43-97 (139)
23 PF00757 Furin-like: Furin-lik 29.3 34 0.00073 35.5 2.0 10 602-611 116-125 (149)
24 KOG4258|consensus 26.6 51 0.0011 42.7 3.1 12 532-543 305-316 (1025)
25 TIGR00910 2A0307_GadC glutamat 25.1 4.1E+02 0.0089 32.4 10.3 17 956-972 367-383 (507)
26 COG5058 LAG1 Protein transport 25.0 1.5E+02 0.0032 34.9 6.1 16 927-942 237-252 (395)
27 COG4858 Uncharacterized membra 24.8 1.7E+02 0.0037 32.1 6.1 34 962-997 143-176 (226)
28 KOG2493|consensus 23.1 3.1E+02 0.0068 33.9 8.5 20 982-1001 194-213 (512)
No 1
>KOG3071|consensus
Probab=100.00 E-value=1.3e-62 Score=529.23 Aligned_cols=250 Identities=39% Similarity=0.683 Sum_probs=225.6
Q ss_pred hcCccccCCccccCchHHHHHHHhhhhhhhhcccccCCCCCccccccceehhhHHHHHHHHHHHHHHHHHhcc-CcEEEE
Q psy17252 748 LLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRL-KYSYVC 826 (1076)
Q Consensus 748 ~~D~r~~~w~l~~sp~~~i~I~i~YL~vV~lgprlMknRKPf~LK~~lilyNl~LvvfS~~~~~~~l~~~~~~-~y~~~C 826 (1076)
..|+|+. |+++++|++.+.++++|++++++||++||||||++||+++.+||+.|+++|++++.+.....+.. +|++.|
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c 95 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYLFVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRC 95 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHHHHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence 4577776 99999999999999999999999999999999999999999999999999999877766666554 688889
Q ss_pred eccCCCCChHHHHHHHHhhccccccccccccccccchhhhhcccccccccccccchhhhhchhhhhhHHHHHHHHhhhhh
Q psy17252 827 QPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLE 906 (1076)
Q Consensus 827 ~~~~~s~~~~~l~~lv~~~rl~~~~vc~p~~y~~t~~~l~~~~~t~~~~~~~a~~~~~~~r~~~~~~~~~wlFYLSK~~E 906 (1076)
++.++++++. +.++.+|.|+||+||+.|
T Consensus 96 ~~~~~~~~~~----------------------------------------------------~~r~~~~~~~yylsKfle 123 (274)
T KOG3071|consen 96 QPCFPSDHEP----------------------------------------------------KLRERFWSYLYYLSKFLE 123 (274)
T ss_pred EecCCCCCCc----------------------------------------------------ceeehHHHHHHHHHHHHH
Confidence 8865443321 126789999999999999
Q ss_pred hcchhhhhhccCCCCceeEeeehhhhHhHHhhheeEeccCccchhhhHHhHHHHHHHHHHHHHHhcCCCccchhhhhhhh
Q psy17252 907 FCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYL 986 (1076)
Q Consensus 907 LlDTVF~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~f~~llNS~VHvIMYsYY~LsAlG~rvpk~LwwKr~I 986 (1076)
++||+|||||||+||+||||+|||+.|+..+|.+++|.++|+.++.+.+|++||+|||+||+++|+|+|+++++||||++
T Consensus 124 l~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~ 203 (274)
T KOG3071|consen 124 LLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYI 203 (274)
T ss_pred HHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhhhheeeeee-ccc-CCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhccccCccchhhhh
Q psy17252 987 TILQLIQFTTALILGVNG-IKS-GCDFPLW-MQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKE 1050 (1076)
Q Consensus 987 T~lQIvQFviglv~~~~~-l~~-~C~~p~~-~~~~~~~y~~SfL~LF~nFY~ksYlkk~~k~~~~~~ 1050 (1076)
|.+|++||++..+|..+. ++. +|.+|++ +.+.+..+.++|++||.|||+|+|+|++++++|+++
T Consensus 204 t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~ 270 (274)
T KOG3071|consen 204 TIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKA 270 (274)
T ss_pred HHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 999999999999998887 665 8999988 888888889999999999999999998777655444
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.9e-61 Score=512.58 Aligned_cols=234 Identities=38% Similarity=0.776 Sum_probs=203.9
Q ss_pred cccCchHHHHHHHhhhhhhhhcccccCCCCCccccccceehhhHHHHHHHHHHHHHHHHHhc-----cCcEEEEeccCCC
Q psy17252 758 MVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTR-----LKYSYVCQPVTYV 832 (1076)
Q Consensus 758 l~~sp~~~i~I~i~YL~vV~lgprlMknRKPf~LK~~lilyNl~LvvfS~~~~~~~l~~~~~-----~~y~~~C~~~~~s 832 (1076)
|+++|++++.++++|+++++.||++||||||++||+++++||++|+++|+|++++++....+ ..++..|++.+.+
T Consensus 2 l~~~~~~~~~~~~~Yl~~V~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~~~ 81 (250)
T PF01151_consen 2 LMSNPWFPILIVVLYLLFVFLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVDFD 81 (250)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCC
Confidence 58899999999999999999999999999999999999999999999999999999854322 1255566532211
Q ss_pred CChHHHHHHHHhhccccccccccccccccchhhhhcccccccccccccchhhhhchhhhhhHHHHHHHHhhhhhhcchhh
Q psy17252 833 NTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTFF 912 (1076)
Q Consensus 833 ~~~~~l~~lv~~~rl~~~~vc~p~~y~~t~~~l~~~~~t~~~~~~~a~~~~~~~r~~~~~~~~~wlFYLSK~~ELlDTVF 912 (1076)
++ ...++++++|.|+||+||++|++||+|
T Consensus 82 ~~---------------------------------------------------~~~~~~~~~~~~~fylSK~~EllDTvf 110 (250)
T PF01151_consen 82 PD---------------------------------------------------SYSSGRVGFWYWLFYLSKYYELLDTVF 110 (250)
T ss_pred Cc---------------------------------------------------ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011247899999999999999999999
Q ss_pred hhhccCCCCceeEeeehhhhHhHHhhheeEeccCccchhhhHHhHHHHHHHHHHHHHHhcCCC-ccchhhhhhhhhhhhh
Q psy17252 913 FILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPH-IAKYLWWKKYLTILQL 991 (1076)
Q Consensus 913 ~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~f~~llNS~VHvIMYsYY~LsAlG~r-vpk~LwwKr~IT~lQI 991 (1076)
+||||| |++|||||||++|++++|.++++.++|+.++++++|++||++||+||+++|+|+| .|+ ||||+||.+||
T Consensus 111 lvLrkK--~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~VH~iMY~YY~l~a~g~~~~~~--~~k~~IT~~Qi 186 (250)
T PF01151_consen 111 LVLRKK--QLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFVHVIMYSYYFLSALGIRKVPR--WWKKYITSLQI 186 (250)
T ss_pred HHHhCC--CcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHHHhcccccchh--HHHHHHhHHhh
Confidence 999998 9999999999999999999999998888888889999999999999999999986 444 89999999999
Q ss_pred hhHhhhheeeeeeccc------CC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhccccCccch
Q psy17252 992 IQFTTALILGVNGIKS------GC---DFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIH 1046 (1076)
Q Consensus 992 vQFviglv~~~~~l~~------~C---~~p~~~~~~~~~y~~SfL~LF~nFY~ksYlkk~~k~~ 1046 (1076)
+||+++++++.+.++. +| ++|++..+....++++|++||.|||+|+|+||++|||
T Consensus 187 ~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~k~ 250 (250)
T PF01151_consen 187 VQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFINFYIKSYIKKKKKKK 250 (250)
T ss_pred hhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCC
Confidence 9999999988776654 89 6678888889999999999999999999999877763
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.9e-58 Score=499.36 Aligned_cols=236 Identities=24% Similarity=0.399 Sum_probs=194.8
Q ss_pred CccccCCccccCchHHHHHHHhhhhhhhhcccccCC----CCCcc-ccccceehhhHHHHHHHHHHHHHHHHH----hcc
Q psy17252 750 NERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRD----RKPYK-LTSILVPYNMLMCALNLYIAIELLVAS----TRL 820 (1076)
Q Consensus 750 D~r~~~w~l~~sp~~~i~I~i~YL~vV~lgprlMkn----RKPf~-LK~~lilyNl~LvvfS~~~~~~~l~~~----~~~ 820 (1076)
.+|+++| ++++|++++.|+++|+++|++|||+||| |||++ ||+++++||++|+++|++++++.+... +..
T Consensus 14 ~~~~~~w-l~~~~~~~~~i~~~Yl~~V~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~ 92 (272)
T PTZ00251 14 GHAVQKW-LASNVDICVYIAAAYLTFVFKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKY 92 (272)
T ss_pred cHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999 8999999999999999777899999974 99999 999999999999999999998886433 222
Q ss_pred C-cEEEEeccCCCCChHHHHHHHHhhccccccccccccccccchhhhhcccccccccccccchhhhhchhhhhhHHHHHH
Q psy17252 821 K-YSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWY 899 (1076)
Q Consensus 821 ~-y~~~C~~~~~s~~~~~l~~lv~~~rl~~~~vc~p~~y~~t~~~l~~~~~t~~~~~~~a~~~~~~~r~~~~~~~~~wlF 899 (1076)
+ ++..|+.. +++ ..++++++|+|+|
T Consensus 93 g~~~~~C~~~---~~~---------------------------------------------------~~~~~~~~~~~~f 118 (272)
T PTZ00251 93 GLHDTLCTFR---EDE---------------------------------------------------FYTGKVGVAMGLF 118 (272)
T ss_pred CcceeeecCC---CCc---------------------------------------------------chhHHHHHHHHHH
Confidence 2 44455321 110 0013678999999
Q ss_pred HHhhhhhhcchhhhhhccCCCCceeEeeehhhhHhHHhhheeEeccCccchh-hhHHhHHHHHHHHHHHHHHhcCCCccc
Q psy17252 900 YFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFL-PAMVNSFIHVLMYSYYALAALGPHIAK 978 (1076)
Q Consensus 900 YLSK~~ELlDTVF~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~f-~~llNS~VHvIMYsYY~LsAlG~rvpk 978 (1076)
|+||++|++||+||||||| |++|||||||++|++++|.++ .++++..+ ++.+|++||++||+||+++|+|+|.+
T Consensus 119 ~lsK~~El~DTvF~VLRKK--qvsFLHvYHH~~~~~~~w~~~--~~g~~~~~~~~~lNs~VH~iMY~YY~lsa~g~~~~- 193 (272)
T PTZ00251 119 SISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSY--QQGSSIWICAAAMNYFVHSIMYFYFALSEAGFKKL- 193 (272)
T ss_pred HHHHHHHHHhHhhhhhcCC--CchHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-
Confidence 9999999999999999998 999999999999999999975 34444443 58999999999999999999999733
Q ss_pred hhhhhhhhhhhhhhhHhhhheeeeeecc--------cCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q psy17252 979 YLWWKKYLTILQLIQFTTALILGVNGIK--------SGCDFPL-WMQYLLVFYMITFIVLFGNFYAKAYIHKVFKI 1045 (1076)
Q Consensus 979 ~LwwKr~IT~lQIvQFviglv~~~~~l~--------~~C~~p~-~~~~~~~~y~~SfL~LF~nFY~ksYlkk~~k~ 1045 (1076)
.-||||+||.+||+||+++++|..+.++ .+|+++. ...+....++++|++||.|||+|+|+|||||+
T Consensus 194 ~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~l~LF~~Fy~~~Y~~~~~~~ 269 (272)
T PTZ00251 194 VKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFNFYLFSEMFVKGYVLPRKAK 269 (272)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 1159999999999999999988776653 3698877 66666677789999999999999998875555
No 4
>KOG3072|consensus
Probab=100.00 E-value=1.4e-50 Score=433.53 Aligned_cols=234 Identities=26% Similarity=0.408 Sum_probs=183.1
Q ss_pred cccCCccccCchHHHHHHHhhhhhhhhcccccCCCCCccccccceehhhHHHHHHHHHHHHHHHHHhccCcEEEEeccCC
Q psy17252 752 RTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTY 831 (1076)
Q Consensus 752 r~~~w~l~~sp~~~i~I~i~YL~vV~lgprlMknRKPf~LK~~lilyNl~LvvfS~~~~~~~l~~~~~~~y~~~C~~~~~ 831 (1076)
++..| +.++|...+.|+++|+++++.|+++|||||||+|++++.+||.++++||+..++.+.......
T Consensus 30 ~~~~~-~~~~~~~si~is~~Y~v~if~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~----------- 97 (282)
T KOG3072|consen 30 SVVKF-FQEHWPLSIHISIAYLVLIFGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAV----------- 97 (282)
T ss_pred HHHHH-HHhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 33344 356677779999999999999999999999999999999999999999998665544333221
Q ss_pred CCChHHHHHHHHhhccccccccccccccccchhhhhcccccccccccccchhhhhchhhhhhHHHHHHHHhhhhhhcchh
Q psy17252 832 VNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLISNLAINDCFLQRLDYKIANAVWWYYFSKLLEFCDTF 911 (1076)
Q Consensus 832 s~~~~~l~~lv~~~rl~~~~vc~p~~y~~t~~~l~~~~~t~~~~~~~a~~~~~~~r~~~~~~~~~wlFYLSK~~ELlDTV 911 (1076)
+ ..++..++.|++..+.+ +..+||+|+|.+||..|++||+
T Consensus 98 ---------~--~~~Gf~~s~C~~~~~~~-----------------------------~~~~fW~~~fvlSK~~ElgDT~ 137 (282)
T KOG3072|consen 98 ---------F--RAAGFKGSYCDANNLGL-----------------------------SVSGFWSWLFVLSKAPELGDTI 137 (282)
T ss_pred ---------H--HhhhhheeeeecccCCc-----------------------------chHHHHHHHHHHHhhhhhhcee
Confidence 0 01112334444332210 2468999999999999999999
Q ss_pred hhhhccCCCCceeEeeehhhhHhHHhhheeEeccCccchhhhHHhHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhhhh
Q psy17252 912 FFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQL 991 (1076)
Q Consensus 912 F~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~f~~llNS~VHvIMYsYY~LsAlG~rvpk~LwwKr~IT~lQI 991 (1076)
|+||||| |++|||||||+.++++.|.++.-.. +.+.|++.||++||++||+||+++|+|+|+|| |..+.||++||
T Consensus 138 FiVLRKr--PliFlHWYHHi~~~iy~~~~y~~~~-a~~rw~i~mNy~vHa~MY~YY~lrsl~ir~Pk--~vam~iTtlQi 212 (282)
T KOG3072|consen 138 FIVLRKR--PLIFLHWYHHILVLIYAWHSYIEKV-AWGRWFIWMNYLVHAFMYSYYALRSLGIRLPK--SVAMAITTLQI 212 (282)
T ss_pred EEEeccC--ccEEEechhhheeeeeeeeecccCC-cCceEEEEEehhHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHH
Confidence 9999998 7999999999999999999876443 33445689999999999999999999999998 78999999999
Q ss_pred hhHhhhheeeeee--cc--cC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy17252 992 IQFTTALILGVNG--IK--SG--CDFPLWMQYLLVFYMITFIVLFGNFYAKAYIHKV 1042 (1076)
Q Consensus 992 vQFviglv~~~~~--l~--~~--C~~p~~~~~~~~~y~~SfL~LF~nFY~ksYlkk~ 1042 (1076)
+||+++....... +. .+ |+.......+..+..++|++||+|||+++|+||+
T Consensus 213 ~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf~~Ff~~aYi~~g 269 (282)
T KOG3072|consen 213 VQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLFANFFYQAYIKKG 269 (282)
T ss_pred HHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999987644322 21 22 7776544444444448999999999999999985
No 5
>KOG3187|consensus
Probab=93.80 E-value=1.1 Score=48.99 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=51.1
Q ss_pred hhhhcchhhhhhccCCCCceeEeeehhhhHhHHhhheeEeccCccch-hhhHHhHHHHHHHHHHHHHHhcCCCccchhhh
Q psy17252 904 LLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTF-LPAMVNSFIHVLMYSYYALAALGPHIAKYLWW 982 (1076)
Q Consensus 904 ~~ELlDTVF~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~-f~~llNS~VHvIMYsYY~LsAlG~rvpk~Lww 982 (1076)
+.|.+.-.|=+ -|.+.=+++.|+.|-..+++.......++...... +....=+..-.+=|+||+....|. .|+.+.|
T Consensus 60 ~lEi~~~~~g~-v~S~~v~t~~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~-~p~~l~w 137 (223)
T KOG3187|consen 60 LLEIINASFGL-VKSSPVVTLFQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGV-LPKLLTW 137 (223)
T ss_pred HHHHHHHHhcc-ccCCceeeeeeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhhH
Confidence 34444444412 23334456788888877666554444444422222 233456778888999999999998 7787778
Q ss_pred hhhhh
Q psy17252 983 KKYLT 987 (1076)
Q Consensus 983 Kr~IT 987 (1076)
-||=+
T Consensus 138 lRYt~ 142 (223)
T KOG3187|consen 138 LRYTL 142 (223)
T ss_pred hhhhh
Confidence 88854
No 6
>KOG3030|consensus
Probab=89.61 E-value=6 Score=45.66 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHhhchHHHHhhhhheeccCCccccccCCCceeehhhhhhhhcCc-cccCCc
Q psy17252 695 APLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNE-RTRGWL 757 (1076)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~D~-r~~~w~ 757 (1076)
.+.+++.-.++.++++++.++++-...| ..+.++-.+...-+...|+ .++.|+
T Consensus 13 ~~~~~~~d~~il~~l~~~~~~l~~~~~~----------~~rgF~c~D~si~~Py~~~etI~~~~ 66 (317)
T KOG3030|consen 13 RPCRVLVDLLILALLVLLFYVLELTDPF----------YRRGFFCDDESISYPYRENETIPPLL 66 (317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccc----------eeeeeecCChhhcCcCCCCCccCHHH
Confidence 3456666667777777887777654433 3455454444444444554 555554
No 7
>PF15042 LELP1: Late cornified envelope-like proline-rich protein 1
Probab=82.05 E-value=0.8 Score=44.17 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=4.5
Q ss_pred CCCCCCCccee
Q psy17252 608 ICLTECTPICL 618 (1076)
Q Consensus 608 ~C~~gC~~~c~ 618 (1076)
.|..-|+++||
T Consensus 98 pCpPkCP~PCp 108 (111)
T PF15042_consen 98 PCPPKCPPPCP 108 (111)
T ss_pred CCCCCCCCCCC
Confidence 33444444443
No 8
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=81.75 E-value=6.3 Score=43.35 Aligned_cols=32 Identities=28% Similarity=0.656 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHH-hcCCCccchhhhhhhhh
Q psy17252 955 VNSFIHVLMYSYYALA-ALGPHIAKYLWWKKYLT 987 (1076)
Q Consensus 955 lNS~VHvIMYsYY~Ls-AlG~rvpk~LwwKr~IT 987 (1076)
.=+..-+|=|.||++. ..|. .|+.+.|-||=+
T Consensus 110 aWs~tEvIRY~yY~~~~~~~~-~p~~L~WLRYt~ 142 (221)
T PLN02838 110 SWSITEIIRYSFFGMKEAFGF-APSWLLWLRYST 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHhc
Confidence 3367788999999877 4465 477777888754
No 9
>COG0558 PgsA Phosphatidylglycerophosphate synthase [Lipid metabolism]
Probab=71.00 E-value=23 Score=37.50 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhhhcchhhhhhccCCCCceeEee--------ehhhhHhH-HhhheeEeccCccchhhhHHhHHHHHHHH
Q psy17252 894 NAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHV--------YHHSTMFF-LWWIGIKWVPSGSTFLPAMVNSFIHVLMY 964 (1076)
Q Consensus 894 ~~~wlFYLSK~~ELlDTVF~VLRKK~kqVSFLHv--------YHHa~~ll-~~W~~iry~~~g~~~f~~llNS~VHvIMY 964 (1076)
...++|.++-+.|.+|-.+ -||+ +|.|-+=- ++.+..++ .++.+. .. .+++..++=..-=.++|
T Consensus 43 ~~~~l~~~a~l~D~lDG~l--AR~~-~~~S~~G~~LDp~~Dk~~~~~~l~~l~~~~~--~~--~~~~~~l~l~r~~~vs~ 115 (192)
T COG0558 43 LALVLFLLAALTDALDGYL--ARKW-GQVSRFGAFLDPVADKLLDAALLLGLVALGP--VS--PLWLAILILAREILVSY 115 (192)
T ss_pred HHHHHHHHHHHHHHHhHHH--HHHh-cCCCccchhcchhhHHHHHHHHHHHHHHhcc--cc--hHHHHHHHHHHHHHHHH
Confidence 3457899999999999987 6775 57776543 23333322 222221 11 23333444444555666
Q ss_pred HHHHHHhcC-CCccchhhhhhhhhhhhhhhHhhhhee
Q psy17252 965 SYYALAALG-PHIAKYLWWKKYLTILQLIQFTTALIL 1000 (1076)
Q Consensus 965 sYY~LsAlG-~rvpk~LwwKr~IT~lQIvQFviglv~ 1000 (1076)
.+=..++.| ....+..++.|..|.+||+=+...+..
T Consensus 116 ~r~~~~~~g~~~~~~~~~~gk~~t~~~~~~i~~~l~~ 152 (192)
T COG0558 116 LRALAASLGGRDYVGASGRGKRKTILQMVALLLLLLG 152 (192)
T ss_pred HHHHHHHhcCCceECcchhhHHHHHHHHHHHHHHHHH
Confidence 666666665 223344478899999999887776554
No 10
>KOG3071|consensus
Probab=70.87 E-value=2.6 Score=47.63 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=44.7
Q ss_pred hhhh-hhhhhhhhhHhhhheeeeeecccCCCCc-H-HHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhhh
Q psy17252 981 WWKK-YLTILQLIQFTTALILGVNGIKSGCDFP-L-WMQYLLVFYMITFIVLFGNFYAKAYIHKVFKIHKEKE 1050 (1076)
Q Consensus 981 wwKr-~IT~lQIvQFviglv~~~~~l~~~C~~p-~-~~~~~~~~y~~SfL~LF~nFY~ksYlkk~~k~~~~~~ 1050 (1076)
|||+ +-|-+|++||+-.++..++.....=-.| - ............+...|.--|.+=|.|.-+|++|++.
T Consensus 194 ~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~ 266 (274)
T KOG3071|consen 194 QWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKKA 266 (274)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 5777 7888888888888887655554322222 2 2333344444777888888888888887655544333
No 11
>PF15042 LELP1: Late cornified envelope-like proline-rich protein 1
Probab=69.46 E-value=2.9 Score=40.45 Aligned_cols=14 Identities=36% Similarity=0.970 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCc
Q psy17252 602 FTKCTPICLTECTP 615 (1076)
Q Consensus 602 ~~~C~p~C~~gC~~ 615 (1076)
-..|.|-|+..|++
T Consensus 96 ~kpCpPkCP~PCpp 109 (111)
T PF15042_consen 96 PKPCPPKCPPPCPP 109 (111)
T ss_pred CCCCCCCCCCCCCC
Confidence 33444555555544
No 12
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=66.47 E-value=13 Score=43.15 Aligned_cols=121 Identities=26% Similarity=0.449 Sum_probs=65.4
Q ss_pred hhccCCCCceeEeeehhhhHhHHhhheeEeccCccch--------hhhHHhHHHHHHHHHH-----HHHHhcCCCccchh
Q psy17252 914 ILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTF--------LPAMVNSFIHVLMYSY-----YALAALGPHIAKYL 980 (1076)
Q Consensus 914 VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g~~~--------f~~llNS~VHvIMYsY-----Y~LsAlG~rvpk~L 980 (1076)
|||-.+.++--=-++||-..+...-..+-| |.+..+ .+.++=++|+.+=|.| |-+.|+|-|.+-.+
T Consensus 171 IL~~NGS~Ik~WW~~HHy~s~~~s~v~Ltw-p~~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdv 249 (330)
T PF07851_consen 171 ILIVNGSRIKGWWVFHHYISTFLSGVMLTW-PDGEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNMDV 249 (330)
T ss_pred hhccCCCcchHHHHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCcccee
Confidence 455555555555578998766665555545 333322 2345666677777777 88999998743321
Q ss_pred -------hhhh-------hhhhhhhhhHhhhheeeeeecccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17252 981 -------WWKK-------YLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYI 1039 (1076)
Q Consensus 981 -------wwKr-------~IT~lQIvQFviglv~~~~~l~~~C~~p~~~~~~~~~y~~SfL~LF~nFY~ksYl 1039 (1076)
|+.| .+-..|+.|+..+....-.....+|. .+-+...++. .++.-++||+--...
T Consensus 250 t~eG~~s~~~~~L~fLlPfLf~~~~~q~yn~~~l~~~~~~~~~~-ewqv~~~~~~---f~~l~~gN~~tt~~v 318 (330)
T PF07851_consen 250 TVEGFQSWMWRGLTFLLPFLFFGQFFQLYNAYTLFELSYHPECR-EWQVFVCGLL---FLILFLGNFFTTLKV 318 (330)
T ss_pred eecccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch-HHHHHHHHHH---HHHHHhhhHHHHHHH
Confidence 3333 44456777776654322222223454 1222222222 233446888876654
No 13
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=59.36 E-value=10 Score=39.76 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=46.8
Q ss_pred hhhhcchhhhhhccCCCCceeEeeehhhhHhHHhhheeEeccCc--cchh--hhHHhHHHHHHHHHHHHHHhcCCCccch
Q psy17252 904 LLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSG--STFL--PAMVNSFIHVLMYSYYALAALGPHIAKY 979 (1076)
Q Consensus 904 ~~ELlDTVF~VLRKK~kqVSFLHvYHHa~~ll~~W~~iry~~~g--~~~f--~~llNS~VHvIMYsYY~LsAlG~rvpk~ 979 (1076)
++|.+..++=+.|-+ =..+++|+.--..++ |..+...+.. ++.+ ..+.=+...+|=|.||+.+-+|.. |+.
T Consensus 5 ~lEi~h~~~Glv~S~-~~~t~~Qv~sR~~vv---~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~-p~~ 79 (164)
T PF04387_consen 5 VLEILHAALGLVRSP-VLTTFMQVFSRLFVV---WGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIV-PYW 79 (164)
T ss_pred HHHHHHHHhccccCc-cHHHHHHHHHHHHee---hhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCC-chH
Confidence 456666666554443 245566665555444 4333322321 2221 123447788899999999998875 566
Q ss_pred hhhhhhhhh
Q psy17252 980 LWWKKYLTI 988 (1076)
Q Consensus 980 LwwKr~IT~ 988 (1076)
+.|-||=+.
T Consensus 80 L~WLRYs~F 88 (164)
T PF04387_consen 80 LTWLRYSAF 88 (164)
T ss_pred HHHHHHhhH
Confidence 678888654
No 14
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=56.11 E-value=30 Score=40.65 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhccccCccchhhhhhccccccccc
Q psy17252 1023 MITFIVLFGNFYAKAYIHKVFKIHKEKEAKKSKDEIQN 1060 (1076)
Q Consensus 1023 ~~SfL~LF~nFY~ksYlkk~~k~~~~~~~~~~~~~~~~ 1060 (1076)
.......|.+++.++-.||.||..-|+|....|.|.++
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (455)
T TIGR00892 412 SAGLFLAIGNYINYRLLAKEQKAALEREGARDKKDAEG 449 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 34557889999999777776666556665444444443
No 15
>KOG1025|consensus
Probab=55.35 E-value=7.9 Score=49.63 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhhhhhcchh
Q psy17252 893 ANAVWWYYFSKLLEFCDTF 911 (1076)
Q Consensus 893 ~~~~wlFYLSK~~ELlDTV 911 (1076)
....|.|=++|-+.+++--
T Consensus 799 ~lLnw~~QIAkgM~YLe~q 817 (1177)
T KOG1025|consen 799 DLLNWCYQIAKGMKYLEEQ 817 (1177)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556777777776666544
No 16
>KOG4258|consensus
Probab=45.55 E-value=25 Score=45.24 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhcc
Q psy17252 1026 FIVLFGNFYAKAYI 1039 (1076)
Q Consensus 1026 fL~LF~nFY~ksYl 1039 (1076)
+---|-||-.++-.
T Consensus 715 ~~~~FEd~L~n~i~ 728 (1025)
T KOG4258|consen 715 EQKTFEDFLHNAIF 728 (1025)
T ss_pred HHHHHhhhccceee
Confidence 33444444444433
No 17
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=44.21 E-value=13 Score=38.58 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.7
Q ss_pred cCCccccccCCCCc
Q psy17252 586 FTKCTPICLTECTP 599 (1076)
Q Consensus 586 ~~~C~~sC~~~C~~ 599 (1076)
++.|-..|-.||..
T Consensus 116 ~~~Cv~~CP~gy~~ 129 (149)
T PF00757_consen 116 NGSCVRECPSGYME 129 (149)
T ss_dssp TTEEESS-TTTEEE
T ss_pred CCcccccCCCCCEE
Confidence 44555566666666
No 18
>PF04247 SirB: Invasion gene expression up-regulator, SirB; InterPro: IPR007360 SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown [].
Probab=36.52 E-value=31 Score=34.74 Aligned_cols=66 Identities=26% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHhhchHHHHhhhhheeccCCccccccCCCceeehhhhhhh--------hcCccccCCccccCchHHHHHHHhhhh
Q psy17252 704 LLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFV--------LLNERTRGWLMVDSPIPTLAYTLIYLS 774 (1076)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~--------~~D~r~~~w~l~~sp~~~i~I~i~YL~ 774 (1076)
++++.+|.-+|++|..+.++=++.....-++-=+=..|+-.+.. ..+|-.++|...+ +...++|++
T Consensus 10 ~~~v~lSi~lF~~R~~~~~~~~~~~~~k~~ki~pHiiDTlLL~sgi~L~~~~~~~pf~~~WL~~K-----l~~li~YI~ 83 (123)
T PF04247_consen 10 MLFVALSILLFVLRFLWLLTGSPWLQKKWVKILPHIIDTLLLLSGIGLMVILGQYPFVDPWLTAK-----LVLLIAYIV 83 (123)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcccceeeehhHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH-----HHHHHHHHH
Confidence 56788888899999999988777654443332222333333222 2245555554333 666777773
No 19
>PF14843 GF_recep_IV: Growth factor receptor domain IV; PDB: 1N8Z_C 1S78_A 3N85_A 2A91_A 3MZW_A 3BE1_A 3U2P_A 2AHX_B 3LTF_A 3I2T_A ....
Probab=36.37 E-value=48 Score=33.51 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=6.2
Q ss_pred CCCCCCCCCCcc
Q psy17252 605 CTPICLTECTPI 616 (1076)
Q Consensus 605 C~p~C~~gC~~~ 616 (1076)
|.+.|..||++|
T Consensus 115 Ch~~C~~gC~Gp 126 (132)
T PF14843_consen 115 CHPSCTQGCTGP 126 (132)
T ss_dssp -STTSTT-BSSS
T ss_pred cCccccCcCCCC
Confidence 556666666654
No 20
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=33.69 E-value=5.7e+02 Score=33.16 Aligned_cols=20 Identities=20% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy17252 1019 LVFYMITFIVLFGNFYAKAY 1038 (1076)
Q Consensus 1019 ~~~y~~SfL~LF~nFY~ksY 1038 (1076)
.+++.+..+.++.|+++...
T Consensus 440 g~l~~~G~llf~~nl~~t~~ 459 (712)
T PRK14485 440 GSLYLVGMIVMAYNIIKTVR 459 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55666778888888887763
No 21
>COG5548 Small integral membrane protein [Function unknown]
Probab=32.14 E-value=29 Score=33.88 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=15.5
Q ss_pred hhhhhhcccccCCCCCcc
Q psy17252 773 LSIVTIGPRLMRDRKPYK 790 (1076)
Q Consensus 773 L~vV~lgprlMknRKPf~ 790 (1076)
+++++.++|+||.|||.+
T Consensus 65 ~Ll~~~~~R~~~sRKpvP 82 (105)
T COG5548 65 ALLVFFALRLVRSRKPVP 82 (105)
T ss_pred HHHHhcchhccccCCCcc
Confidence 377789999999999876
No 22
>PF14342 DUF4396: Domain of unknown function (DUF4396)
Probab=29.48 E-value=1.4e+02 Score=30.86 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=35.5
Q ss_pred hhHHhHHHHHHHHHHHHHH-hcCCCccchhh--hh---hhhhhhhhhhHhhhhee
Q psy17252 952 PAMVNSFIHVLMYSYYALA-ALGPHIAKYLW--WK---KYLTILQLIQFTTALIL 1000 (1076)
Q Consensus 952 ~~llNS~VHvIMYsYY~Ls-AlG~rvpk~Lw--wK---r~IT~lQIvQFviglv~ 1000 (1076)
...++.++-.+...|+.+. .-|.+.++.++ .| -.||.+|+.++.+....
T Consensus 43 l~~~la~~~gi~~~~~~l~~~~~~~~~~al~~A~~ad~lSm~a~eigm~~~m~~~ 97 (139)
T PF14342_consen 43 LAYALAFLFGIAFQYFPLMPMRGLSYGRALKTAFKADTLSMTAMEIGMNGVMALL 97 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999998 55555544433 22 35889999999887654
No 23
>PF00757 Furin-like: Furin-like cysteine rich region; InterPro: IPR006211 The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0016020 membrane; PDB: 3U2P_A 2AHX_B 1N8Y_C 1IGR_A 1S78_A 3MZW_A 2A91_A 1N8Z_C 3N85_A 3H3B_B ....
Probab=29.33 E-value=34 Score=35.52 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q psy17252 602 FTKCTPICLT 611 (1076)
Q Consensus 602 ~~~C~p~C~~ 611 (1076)
++.|-+.|+.
T Consensus 116 ~~~Cv~~CP~ 125 (149)
T PF00757_consen 116 NGSCVRECPS 125 (149)
T ss_dssp TTEEESS-TT
T ss_pred CCcccccCCC
Confidence 3444444443
No 24
>KOG4258|consensus
Probab=26.62 E-value=51 Score=42.71 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=7.1
Q ss_pred cccccccCcccc
Q psy17252 532 KCTPVCLTECTP 543 (1076)
Q Consensus 532 ~C~~sC~~~C~~ 543 (1076)
.|-..|.+|+..
T Consensus 305 ~Cv~~CPsGy~~ 316 (1025)
T KOG4258|consen 305 QCVAKCPSGYKR 316 (1025)
T ss_pred cchhhCCCccee
Confidence 455666666644
No 25
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=25.05 E-value=4.1e+02 Score=32.40 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHhc
Q psy17252 956 NSFIHVLMYSYYALAAL 972 (1076)
Q Consensus 956 NS~VHvIMYsYY~LsAl 972 (1076)
....-.++|..-+++.+
T Consensus 367 ~~~~~~i~Y~l~~~a~i 383 (507)
T TIGR00910 367 TVVIYLCAYFLFFIGYF 383 (507)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677755444443
No 26
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=25.00 E-value=1.5e+02 Score=34.91 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=13.6
Q ss_pred eehhhhHhHHhhheeE
Q psy17252 927 VYHHSTMFFLWWIGIK 942 (1076)
Q Consensus 927 vYHHa~~ll~~W~~ir 942 (1076)
+.||+.|++..|.++.
T Consensus 237 v~HHIVTllLI~lSY~ 252 (395)
T COG5058 237 VFHHIVTLLLIWLSYV 252 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999997653
No 27
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.78 E-value=1.7e+02 Score=32.09 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCccchhhhhhhhhhhhhhhHhhh
Q psy17252 962 LMYSYYALAALGPHIAKYLWWKKYLTILQLIQFTTA 997 (1076)
Q Consensus 962 IMYsYY~LsAlG~rvpk~LwwKr~IT~lQIvQFvig 997 (1076)
+|| ||+-+-.|-|-+|.-||| ++-..-..-++.+
T Consensus 143 ~my-~y~yr~~ad~sqr~~~~K-~~lv~~~sm~lWi 176 (226)
T COG4858 143 IMY-YYAYRMRADNSQRPGTWK-YLLVAVLSMLLWI 176 (226)
T ss_pred HHH-HHHHHhhcccccCCchHH-HHHHHHHHHHHHH
Confidence 444 455555665555543565 4433333333333
No 28
>KOG2493|consensus
Probab=23.06 E-value=3.1e+02 Score=33.89 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=11.6
Q ss_pred hhhhhhhhhhhhHhhhheee
Q psy17252 982 WKKYLTILQLIQFTTALILG 1001 (1076)
Q Consensus 982 wKr~IT~lQIvQFviglv~~ 1001 (1076)
.|+++-.+-.+-|+...+..
T Consensus 194 ~~~gl~~lp~~y~~~~~~n~ 213 (512)
T KOG2493|consen 194 VKNGLRLLPVFYFITVSINV 213 (512)
T ss_pred hhhchhhcchhhhhhhhhee
Confidence 46666666666666654433
Done!