Query psy17252
Match_columns 1076
No_of_seqs 399 out of 1321
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 17:14:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mox_A Epidermal growth factor 90.4 0.22 7.6E-06 58.3 5.3 14 586-599 280-293 (501)
2 1n8y_C Protooncoprotein; tyros 89.1 0.39 1.3E-05 57.5 6.1 14 587-600 288-301 (608)
3 1yy9_A Epidermal growth factor 84.3 0.96 3.3E-05 54.3 5.9 11 587-597 281-291 (624)
4 3i2t_A Epidermal growth factor 84.2 0.7 2.4E-05 54.8 4.6 12 587-598 282-293 (551)
5 2dtg_E Insulin receptor; IR ec 80.4 2.6 9E-05 52.0 7.8 11 588-598 283-293 (897)
6 2ahx_A P180ERBB4, receptor tyr 79.5 0.89 3.1E-05 54.5 3.2 10 605-614 302-311 (617)
7 1m6b_A C-ER, receptor protein- 79.2 1.5 5.2E-05 52.6 5.1 9 589-597 282-290 (621)
8 2hr7_A Insulin receptor; hormo 77.7 0.6 2E-05 54.5 1.0 11 605-615 304-314 (486)
9 2ygq_A WIF-1, WNT inhibitory f 76.0 3.5 0.00012 45.5 6.4 14 488-501 192-205 (324)
10 2dtg_E Insulin receptor; IR ec 52.8 12 0.00041 46.3 5.4 10 611-620 282-291 (897)
11 1n8y_C Protooncoprotein; tyros 49.3 23 0.00079 42.5 6.9 7 1062-1068 577-583 (608)
12 1igr_A Insulin-like growth fac 39.4 13 0.00043 43.5 2.5 9 607-615 228-236 (478)
13 2hm3_A Nematocyst outer WALL a 38.6 8.3 0.00028 28.6 0.5 15 537-551 8-22 (31)
14 1yy9_A Epidermal growth factor 37.4 44 0.0015 40.2 6.8 6 613-618 283-288 (624)
15 2gy5_A Angiopoietin-1 receptor 36.9 31 0.0011 39.4 5.2 7 592-598 308-314 (423)
16 1zlg_A Anosmin 1; insulin-like 34.3 21 0.00073 42.4 3.4 11 601-611 141-151 (680)
17 1sop_A Mini-collagen; collagen 33.5 15 0.00051 26.8 1.2 17 341-357 3-19 (26)
18 2ahx_A P180ERBB4, receptor tyr 25.9 39 0.0013 40.5 3.7 8 612-619 279-286 (617)
19 2gy5_A Angiopoietin-1 receptor 24.3 1.1E+02 0.0037 35.0 6.8 7 568-574 308-314 (423)
20 2nx6_A Nematocyst outer WALL a 20.7 24 0.00084 25.4 0.3 9 345-353 11-19 (27)
No 1
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=90.36 E-value=0.22 Score=58.30 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=8.1
Q ss_pred cCCccccccCCCCc
Q psy17252 586 FTKCTPICLTECTP 599 (1076)
Q Consensus 586 ~~~C~~sC~~~C~~ 599 (1076)
++.|-+.|.+|+-.
T Consensus 280 ~g~Cv~~Cp~G~y~ 293 (501)
T 1mox_A 280 HGSCVRACGADSYE 293 (501)
T ss_dssp TSBEESSCCSSCCC
T ss_pred CCEEeccCCCCCee
Confidence 44566666666543
No 2
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=89.05 E-value=0.39 Score=57.48 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=7.9
Q ss_pred CCccccccCCCCcC
Q psy17252 587 TKCTPICLTECTPV 600 (1076)
Q Consensus 587 ~~C~~sC~~~C~~~ 600 (1076)
+.|-..|-+|+...
T Consensus 288 ~~Cv~~CP~g~~~~ 301 (608)
T 1n8y_C 288 GSCTLVCPPNNQEV 301 (608)
T ss_dssp SBEESSCCTTEEEE
T ss_pred CeEeccCCCCCccc
Confidence 45555666665543
No 3
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Probab=84.32 E-value=0.96 Score=54.32 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=5.6
Q ss_pred CCccccccCCC
Q psy17252 587 TKCTPICLTEC 597 (1076)
Q Consensus 587 ~~C~~sC~~~C 597 (1076)
+.|-..|.+|+
T Consensus 281 g~Cv~~CP~g~ 291 (624)
T 1yy9_A 281 GSCVRACGADS 291 (624)
T ss_dssp SBEESSCCTTE
T ss_pred CeEeccCCCCC
Confidence 34555555554
No 4
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=84.18 E-value=0.7 Score=54.83 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=5.8
Q ss_pred CCccccccCCCC
Q psy17252 587 TKCTPICLTECT 598 (1076)
Q Consensus 587 ~~C~~sC~~~C~ 598 (1076)
+.|...|-+|+.
T Consensus 282 ~~Cv~~CP~g~~ 293 (551)
T 3i2t_A 282 GACVRSCPQDKM 293 (551)
T ss_dssp TEEESSCCTTEE
T ss_pred CcccccCCCCCc
Confidence 344445555543
No 5
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=80.41 E-value=2.6 Score=52.02 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=5.1
Q ss_pred CccccccCCCC
Q psy17252 588 KCTPICLTECT 598 (1076)
Q Consensus 588 ~C~~sC~~~C~ 598 (1076)
.|-..|-.|+.
T Consensus 283 ~Cv~~CP~g~~ 293 (897)
T 2dtg_E 283 KCIPECPSGYT 293 (897)
T ss_dssp EEESSCCSSCE
T ss_pred EEccCCCCCcc
Confidence 34445555543
No 6
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=79.50 E-value=0.89 Score=54.45 Aligned_cols=10 Identities=50% Similarity=1.268 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q psy17252 605 CTPICLTECT 614 (1076)
Q Consensus 605 C~p~C~~gC~ 614 (1076)
|.+.|+++|+
T Consensus 302 C~~~C~k~C~ 311 (617)
T 2ahx_A 302 CTDICPKACD 311 (617)
T ss_dssp CC-CCCCEEE
T ss_pred CCCcccCcCC
Confidence 4455555554
No 7
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A*
Probab=79.20 E-value=1.5 Score=52.57 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=3.6
Q ss_pred ccccccCCC
Q psy17252 589 CTPICLTEC 597 (1076)
Q Consensus 589 C~~sC~~~C 597 (1076)
|-..|-.|+
T Consensus 282 Cv~~Cp~g~ 290 (621)
T 1m6b_A 282 CVRACPPDK 290 (621)
T ss_dssp EESSCCTTE
T ss_pred EeccCCCCc
Confidence 333444433
No 8
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=77.68 E-value=0.6 Score=54.52 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=5.4
Q ss_pred CCCCCCCCCCc
Q psy17252 605 CTPICLTECTP 615 (1076)
Q Consensus 605 C~p~C~~gC~~ 615 (1076)
|.+.|+++|++
T Consensus 304 C~~~C~k~C~g 314 (486)
T 2hr7_A 304 CLGPCPKVCHL 314 (486)
T ss_dssp CSSSCCCEEEE
T ss_pred CCccccccccc
Confidence 44455555543
No 9
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=75.95 E-value=3.5 Score=45.47 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=6.7
Q ss_pred cccCCCccccCccc
Q psy17252 488 VCFTKCTPVCFTKC 501 (1076)
Q Consensus 488 ~C~s~C~~sC~~~C 501 (1076)
.|.......|.+|.
T Consensus 192 ~C~~~~~C~C~~G~ 205 (324)
T 2ygq_A 192 LCVTPGFCICPPGF 205 (324)
T ss_dssp EECSSCCEECCTTC
T ss_pred EEcCCCEEeCCCCc
Confidence 44444444555554
No 10
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=52.81 E-value=12 Score=46.25 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=6.5
Q ss_pred CCCCcceehh
Q psy17252 611 TECTPICLVL 620 (1076)
Q Consensus 611 ~gC~~~c~~~ 620 (1076)
+.|...||-.
T Consensus 282 ~~Cv~~CP~g 291 (897)
T 2dtg_E 282 NKCIPECPSG 291 (897)
T ss_dssp TEEESSCCSS
T ss_pred CEEccCCCCC
Confidence 4577777764
No 11
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=49.31 E-value=23 Score=42.47 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=2.9
Q ss_pred CCCCccc
Q psy17252 1062 NNCPEVT 1068 (1076)
Q Consensus 1062 ~~~~~~~ 1068 (1076)
..||+++
T Consensus 577 ~~CP~g~ 583 (608)
T 1n8y_C 577 ARCPSGV 583 (608)
T ss_dssp SSCCEEE
T ss_pred ccCCCCc
Confidence 3444443
No 12
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=39.40 E-value=13 Score=43.51 Aligned_cols=9 Identities=33% Similarity=1.261 Sum_probs=4.1
Q ss_pred CCCCCCCCc
Q psy17252 607 PICLTECTP 615 (1076)
Q Consensus 607 p~C~~gC~~ 615 (1076)
++|-+.||+
T Consensus 228 g~Cv~~CP~ 236 (478)
T 1igr_A 228 GVCVPACPP 236 (478)
T ss_dssp SSEESSCCT
T ss_pred CcCcccCCC
Confidence 344444444
No 13
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=38.57 E-value=8.3 Score=28.56 Aligned_cols=15 Identities=40% Similarity=1.172 Sum_probs=6.0
Q ss_pred ccCccccccCCCCCc
Q psy17252 537 CLTECTPVCLTECTP 551 (1076)
Q Consensus 537 C~~~C~~~C~~~C~p 551 (1076)
|.++|++.|-+.|.|
T Consensus 8 cpsgcsgdcypeckp 22 (31)
T 2hm3_A 8 CPSGCSGDCYPECKP 22 (31)
T ss_dssp CCTTCCGGGTTTTCH
T ss_pred CCCCcCccccCccCC
Confidence 334444444333333
No 14
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Probab=37.41 E-value=44 Score=40.21 Aligned_cols=6 Identities=33% Similarity=0.938 Sum_probs=2.6
Q ss_pred CCccee
Q psy17252 613 CTPICL 618 (1076)
Q Consensus 613 C~~~c~ 618 (1076)
|...||
T Consensus 283 Cv~~CP 288 (624)
T 1yy9_A 283 CVRACG 288 (624)
T ss_dssp EESSCC
T ss_pred EeccCC
Confidence 444444
No 15
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=36.91 E-value=31 Score=39.43 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.3
Q ss_pred cccCCCC
Q psy17252 592 ICLTECT 598 (1076)
Q Consensus 592 sC~~~C~ 598 (1076)
.|.+|+.
T Consensus 308 ~C~~G~~ 314 (423)
T 2gy5_A 308 LCSPGWQ 314 (423)
T ss_dssp ECCTTCB
T ss_pred ECCCCCc
Confidence 3555544
No 16
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=34.30 E-value=21 Score=42.37 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=6.4
Q ss_pred cCCCCCCCCCC
Q psy17252 601 CFTKCTPICLT 611 (1076)
Q Consensus 601 c~~~C~p~C~~ 611 (1076)
|.|+|+..|..
T Consensus 141 c~n~cG~~C~~ 151 (680)
T 1zlg_A 141 CSNGCGHTCQV 151 (680)
T ss_pred ccccccccccc
Confidence 56666665554
No 17
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=33.54 E-value=15 Score=26.82 Aligned_cols=17 Identities=41% Similarity=1.456 Sum_probs=9.6
Q ss_pred ccccccccccccccccc
Q psy17252 341 CTPICLTECTPICLTEC 357 (1076)
Q Consensus 341 C~~vC~~~C~pvC~~~C 357 (1076)
|.++|.++|.|.|-+-|
T Consensus 3 CP~vC~tqCvpsCp~yC 19 (26)
T 1sop_A 3 CPPVCVAQCVPTCPQYC 19 (26)
T ss_dssp CCTTTTTCCCTTSCSTT
T ss_pred CCccccccccCCCCccc
Confidence 55666666655555443
No 18
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=25.93 E-value=39 Score=40.54 Aligned_cols=8 Identities=25% Similarity=0.758 Sum_probs=4.4
Q ss_pred CCCcceeh
Q psy17252 612 ECTPICLV 619 (1076)
Q Consensus 612 gC~~~c~~ 619 (1076)
.|...||-
T Consensus 279 ~Cv~~CP~ 286 (617)
T 2ahx_A 279 SCVRACPS 286 (617)
T ss_dssp EEESSCCT
T ss_pred eeeccCCC
Confidence 45556663
No 19
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=24.35 E-value=1.1e+02 Score=35.01 Aligned_cols=7 Identities=14% Similarity=0.586 Sum_probs=2.7
Q ss_pred CCCCCCC
Q psy17252 568 VCPSECT 574 (1076)
Q Consensus 568 ~C~~~C~ 574 (1076)
.|.++..
T Consensus 308 ~C~~G~~ 314 (423)
T 2gy5_A 308 LCSPGWQ 314 (423)
T ss_dssp ECCTTCB
T ss_pred ECCCCCc
Confidence 3443333
No 20
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=20.68 E-value=24 Score=25.44 Aligned_cols=9 Identities=44% Similarity=1.442 Sum_probs=3.3
Q ss_pred ccccccccc
Q psy17252 345 CLTECTPIC 353 (1076)
Q Consensus 345 C~~~C~pvC 353 (1076)
|...|.|+|
T Consensus 11 cspscapqc 19 (27)
T 2nx6_A 11 CSPSCAPQC 19 (27)
T ss_dssp CCGGGTTTT
T ss_pred CCCccchHH
Confidence 333333333
Done!