Query psy17252
Match_columns 1076
No_of_seqs 399 out of 1321
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 17:15:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17252.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17252hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sopa_ g.71.1.1 (A:) Mini-col 66.3 0.97 7.1E-05 30.6 1.2 18 341-358 2-19 (26)
2 d1m6ba3 g.3.9.1 (A:166-310) Re 37.2 21 0.0015 30.6 5.5 18 533-550 2-19 (145)
3 d1moxa3 g.3.9.1 (A:163-311) EG 32.0 52 0.0038 28.0 7.3 9 589-597 121-129 (149)
4 d1nqla4 g.3.9.1 (A:481-614) EG 24.3 40 0.0029 29.4 5.1 12 605-616 116-127 (134)
5 d2dtge6 g.3.9.1 (E:157-311) In 23.5 1.1E+02 0.0078 26.5 7.9 19 589-607 128-147 (155)
6 d1vfia1 g.84.1.1 (A:4-95) Vana 15.1 3 0.00022 35.9 -4.9 28 336-365 1-28 (92)
7 d1igra3 g.3.9.1 (A:150-299) Ty 14.6 52 0.0038 28.8 3.4 104 510-614 29-150 (150)
8 d1moxa3 g.3.9.1 (A:163-311) EG 10.4 97 0.0071 26.1 3.8 79 531-612 2-81 (149)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.9 1.8E+02 0.013 28.9 5.2 64 979-1042 28-110 (261)
10 d1m0ga_ g.46.1.1 (A:) Metallot 6.7 77 0.0056 21.7 1.0 25 516-541 1-28 (30)
No 1
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=66.32 E-value=0.97 Score=30.60 Aligned_cols=18 Identities=39% Similarity=1.366 Sum_probs=12.4
Q ss_pred cccccccccccccccccc
Q psy17252 341 CTPICLTECTPICLTECT 358 (1076)
Q Consensus 341 C~~vC~~~C~pvC~~~C~ 358 (1076)
|.|+|+.+|.|.|-+-|-
T Consensus 2 cppvcvaqcvptcpqycc 19 (26)
T d1sopa_ 2 CPPVCVAQCVPTCPQYCC 19 (26)
T ss_dssp CCTTTTTCCCTTSCSTTC
T ss_pred CCcchhhhccCCCccccC
Confidence 667777777777766553
No 2
>d1m6ba3 g.3.9.1 (A:166-310) Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.17 E-value=21 Score=30.63 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=8.4
Q ss_pred ccccccCccccccCCCCC
Q psy17252 533 CTPVCLTECTPVCLTECT 550 (1076)
Q Consensus 533 C~~sC~~~C~~~C~~~C~ 550 (1076)
|...|.++|.+...+.|.
T Consensus 2 C~~~C~~~C~g~~~~~C~ 19 (145)
T d1m6ba3 2 CHEVCKGRCWGPGSEDCQ 19 (145)
T ss_dssp CCTTSTTCBSSSSTTCBC
T ss_pred CCchhcCccCCCCccccc
Confidence 445555555444334443
No 3
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.01 E-value=52 Score=27.99 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=3.9
Q ss_pred ccccccCCC
Q psy17252 589 CTPICLTEC 597 (1076)
Q Consensus 589 C~~sC~~~C 597 (1076)
|-.+|.+|+
T Consensus 121 C~~~C~~g~ 129 (149)
T d1moxa3 121 CVRACGADS 129 (149)
T ss_dssp EESSCCSSC
T ss_pred EeCCCCCCC
Confidence 333444444
No 4
>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.34 E-value=40 Score=29.43 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=7.5
Q ss_pred CCCCCCCCCCcc
Q psy17252 605 CTPICLTECTPI 616 (1076)
Q Consensus 605 C~p~C~~gC~~~ 616 (1076)
|.+.|+++|++|
T Consensus 116 C~~~C~~~C~gp 127 (134)
T d1nqla4 116 CHPNCTYGCTGP 127 (134)
T ss_dssp CCTTCSSCCSSS
T ss_pred cCcccccccCCc
Confidence 555666666665
No 5
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.47 E-value=1.1e+02 Score=26.50 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=7.7
Q ss_pred ccccccCCCC-cCcCCCCCC
Q psy17252 589 CTPICLTECT-PVCFTKCTP 607 (1076)
Q Consensus 589 C~~sC~~~C~-~~c~~~C~p 607 (1076)
|-..|.+|+- +...+.|.|
T Consensus 128 Cv~~Cp~g~~~~~~~~~C~~ 147 (155)
T d2dtge6 128 CIPECPSGYTMNSSNLLCTP 147 (155)
T ss_dssp EESSCCSSCEECSSSCBEEC
T ss_pred EcccCCCCCEeCCCcCEECC
Confidence 3334444443 223344543
No 6
>d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2 {Vanadium-rich ascidian (Ascidia sydneiensis samea) [TaxId: 79730]}
Probab=15.07 E-value=3 Score=35.95 Aligned_cols=28 Identities=39% Similarity=0.898 Sum_probs=17.8
Q ss_pred cCCccccccccccccccccccccccccccc
Q psy17252 336 SAPLSCTPICLTECTPICLTECTPICLTEC 365 (1076)
Q Consensus 336 ~~~l~C~~vC~~~C~pvC~~~C~~~C~~~C 365 (1076)
.|+|.|++.|...+. |+..|...|...|
T Consensus 1 ~a~l~C~~~C~~~c~--c~h~C~~~C~~~C 28 (92)
T d1vfia1 1 FAPVDCKGQCTTPCE--PLTACKEKCAESC 28 (92)
T ss_dssp CSCCCSSSSCSSTTH--HHHHHHHHHHHHT
T ss_pred CccCCCCCcccCccC--CCCcCcCcccccc
Confidence 389999999999885 3333444444443
No 7
>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.64 E-value=52 Score=28.77 Aligned_cols=104 Identities=20% Similarity=0.418 Sum_probs=0.0
Q ss_pred ccccccCccccccccccccccccccccccCccccccCCCCCccc-----cCCCcccccCCCCCCCCCCCCc-----CccC
Q psy17252 510 TPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVC-----FTKCTPVCLTECTPVCPSECTP-----VCLT 579 (1076)
Q Consensus 510 ~~~C~~~C~~sC~s~C~~vC~~~C~~sC~~~C~~~C~~~C~pvC-----~~~C~g~C~~~C~~~C~~~C~~-----~C~~ 579 (1076)
...|...|...|...-...=..-|...|.++|++.-...+...| ++.|...|..|.-..-+..|.. .|.+
T Consensus 29 ~~~C~~~C~~~c~~~~~~~~~~cC~~~C~~~C~~~~~~~~c~~C~~~~~~~~C~~~Cp~g~y~~~~~~c~~~~~C~~c~~ 108 (150)
T d1igra3 29 TNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILS 108 (150)
T ss_dssp SSCBCCCCCGGGTTSCBCTTSCBCCTTEEEEESSTTCTTSEEEESSEECSSSEESSCCTTCEEETTTEEECHHHHHTSST
T ss_pred CCcccCccCCCCCCCccCCCCCCcCCccCCCCCCCCCccccccCCCcccCCeeccCCCCceeccccccccCCCcccccCC
Q ss_pred CCcccc------cCCccccccCCCCcC-cCCC-CCCCCCCCCC
Q psy17252 580 ECTPVC------FTKCTPICLTECTPV-CFTK-CTPICLTECT 614 (1076)
Q Consensus 580 ~C~~vC------~~~C~~sC~~~C~~~-c~~~-C~p~C~~gC~ 614 (1076)
.|..-. ++.|..+|-+|+-.. .++. |.| |.+.||
T Consensus 109 ~c~~c~~~~~~~~~~C~~~Cp~g~~~~~~~~~~C~~-C~~~Cp 150 (150)
T d1igra3 109 AESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIP-CEGPCP 150 (150)
T ss_dssp TSCCCSCCCEEETTEEESSCCTTEEESSTTCSCEEE-CSSSCC
T ss_pred ccccCcceeeeECCEEcccCCCCeEecCCCCCEECC-CCCCCc
No 8
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.45 E-value=97 Score=26.10 Aligned_cols=79 Identities=24% Similarity=0.545 Sum_probs=0.0
Q ss_pred ccccccccC-ccccccCCCCCccccCCCcccccCCCCCCCCCCCCcCccCCCcccccCCccccccCCCCcCcCCCCCCCC
Q psy17252 531 TKCTPVCLT-ECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPIC 609 (1076)
Q Consensus 531 ~~C~~sC~~-~C~~~C~~~C~pvC~~~C~g~C~~~C~~~C~~~C~~~C~~~C~~vC~~~C~~sC~~~C~~~c~~~C~p~C 609 (1076)
.+|..+|.+ .|.+.-.+.|..--.+.|...|..++...-...+ |...|...+.+.-...|..--...-++.|.+.|
T Consensus 2 ~~C~~~C~~~~C~g~~~~~C~~c~~~~c~~~C~~~~~~~~~~~~---C~~~C~~c~~~~~~~~C~~C~~~~~~~~C~~~C 78 (149)
T d1moxa3 2 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTC 78 (149)
T ss_dssp CCCCTTSGGGCBSSSSGGGBCCCSSSSCCTTCSSCBSSSSTTSB---CCTTEEEEESSSSSTTEEEESSEEETTEEESSC
T ss_pred cCccccccCCccCCcCCCcCcccCCCccCCcCCccccCCCCCcc---ccccccccCcCCCCCcCcCCCcccccCceeccC
Q ss_pred CCC
Q psy17252 610 LTE 612 (1076)
Q Consensus 610 ~~g 612 (1076)
+.|
T Consensus 79 ~~g 81 (149)
T d1moxa3 79 PPL 81 (149)
T ss_dssp CCS
T ss_pred CCC
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.88 E-value=1.8e+02 Score=28.91 Aligned_cols=64 Identities=20% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhh-hhhhhhhhhhhhHhhhheeeeeecc-------------cCCCCcHHHHHH-----HHHHHHHHHHHHHHHHHHhcc
Q psy17252 979 YLW-WKKYLTILQLIQFTTALILGVNGIK-------------SGCDFPLWMQYL-----LVFYMITFIVLFGNFYAKAYI 1039 (1076)
Q Consensus 979 ~Lw-wKr~IT~lQIvQFviglv~~~~~l~-------------~~C~~p~~~~~~-----~~~y~~SfL~LF~nFY~ksYl 1039 (1076)
+.| +.-.+..+=++|.+.|++.+.++.- .+-++-+.+... .++....|+-++..||..+|+
T Consensus 28 ~~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~ 107 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYR 107 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhcccc
Q ss_pred ccC
Q psy17252 1040 HKV 1042 (1076)
Q Consensus 1040 kk~ 1042 (1076)
+++
T Consensus 108 ~pr 110 (261)
T d3cx5c2 108 SPR 110 (261)
T ss_dssp TTC
T ss_pred Ccc
No 10
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=6.70 E-value=77 Score=21.71 Aligned_cols=25 Identities=40% Similarity=1.089 Sum_probs=0.0
Q ss_pred Cccccccccccccccccccc---cccCcc
Q psy17252 516 ECTPVCLTECTPVCFTKCTP---VCLTEC 541 (1076)
Q Consensus 516 ~C~~sC~s~C~~vC~~~C~~---sC~~~C 541 (1076)
.|-.-|.++|.. |..||.. .||++|
T Consensus 1 scc~ccpsgc~k-casgcvckgktcdtsc 28 (30)
T d1m0ga_ 1 SCCPCCPSGCTK-CASGCVCKGKTCDTSC 28 (30)
T ss_dssp CCCTTSCSCCHH-HHTSCGGGTSSSSTTT
T ss_pred CCCCccccccch-hccCceecCCcccccc
Done!