RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17252
(1076 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems that
produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral membrane
proteins, in eukaryotes they are probably located on the
endoplasmic reticulum. Yeast ELO3 affects plasma membrane
H+-ATPase activity, and may act on a glucose-signaling
pathway that controls the expression of several genes
that are transcriptionally regulated by glucose such as
PMA1.
Length = 244
Score = 241 bits (618), Expect = 6e-73
Identities = 96/293 (32%), Positives = 140/293 (47%), Gaps = 62/293 (21%)
Query: 757 LMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVA 816
++ SP P + ++YL V +GP++MR+RKP+ L +L+ +N+ + L+LY LL
Sbjct: 1 PLLSSPWPVILIIVLYLVFVFLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLAG 60
Query: 817 STRLKYSYVCQPVTYVNTQEELRLLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLIS 876
+ + Y+ V Y +R
Sbjct: 61 AGWGRGLYLALCVCYSFDPGAIR------------------------------------- 83
Query: 877 NLAINDCFLQRLDYKIANAVWWY--YFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMF 934
+ +WY + SK LE DT F +LRKK QL+FLHVYHH+TM
Sbjct: 84 ---------------MGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATML 128
Query: 935 FLWWIGIKWVPSGSTFLPAMVNSFIHVLMYSYYALAALGPHIAKYLWWKKYLTILQLIQF 994
W+G+K+ P G + A++NSF+HV+MY YY LAALG +WWKKY+T LQ+IQF
Sbjct: 129 LYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQIIQF 187
Query: 995 TTALI----LGVNGIKSGCD--FPLWMQYLLVFYMITFIVLFGNFYAKAYIHK 1041
L N K GC FP + L + Y ++++ LF NFY K+Y
Sbjct: 188 VLGLAHVGYALYNYTKGGCGGPFPKAV-RLGLVYYVSYLFLFLNFYIKSYKKP 239
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 66.4 bits (162), Expect = 9e-12
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 19/161 (11%)
Query: 891 KIANAVWWYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTF 950
K+ A+ + SK+ EF DTFF I+ K +L FL +HH T+F W+ + S
Sbjct: 110 KVGVAMGLFSISKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQQGSSIWIC 167
Query: 951 LPAMVNSFIHVLMYSYYALAALG-PHIAKYLWWKKYLTILQLIQ-----FTTALILGVNG 1004
AM N F+H +MY Y+AL+ G + K + Y+T+LQ+ Q F + ++
Sbjct: 168 AAAM-NYFVHSIMYFYFALSEAGFKKLVKP--FAMYITLLQITQMVGGLFVSGYVIVQKL 224
Query: 1005 IK------SGCDFPLWMQYLLVFYMITFIVLFGNFYAKAYI 1039
K SG L+++ I LF + K Y+
Sbjct: 225 TKGDPKGCSGTTMATARGQLMIY--IFNFYLFSEMFVKGYV 263
>gnl|CDD|224582 COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 407
Score = 43.2 bits (102), Expect = 6e-04
Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 148 CTPVSA--LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 205
+PVS ++F + V L+ + L+ ++ LS + ++ L++L + LL
Sbjct: 224 SSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAG-TGLALLPAYLLLF 282
Query: 206 SLSAPLSVLLSALLFVSLSAPLSV----------LLSALLFVSLSAPLSVLLSALLFVSL 255
+LS L LL L+ +L+A L L+S L F+ L
Sbjct: 283 ALSLFLLGLL---LYAALAAFLGAMAGSIKEAQTLISPLTFL-AIIAFLP-----LSFIS 333
Query: 256 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
+AP + + L + P+++LL ALL S L+++ AL+ ++ + + L+ LL
Sbjct: 334 AAPDNAVALILSAIPFLLPVAMLLRALLGGVPS--LAIIALALVALAALSVRILALAVLL 391
Query: 316 FVSLSAPLSVLL 327
F +L
Sbjct: 392 FSREKLLKRILR 403
Score = 38.2 bits (89), Expect = 0.021
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ L A L+ + L L + L AL P V + S P
Sbjct: 122 LVKEDISRLQADLTYARISKLLAELGLSVGERLQALG-----IPPKVDNPVVSEGGESLP 176
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAP----------LSVLLSA------LLFVS 254
+ +ALL V++ L + + A L VLLS+ ++F
Sbjct: 177 PEEISAALLLVAILIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGK 236
Query: 255 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 314
+ V L+ + L+ ++ LS + ++ L++L + LL +LS L LL
Sbjct: 237 ILGAALVGLTQIALWLLALTIATFLSLAVALAG-TGLALLPAYLLLFALSLFLLGLL--- 292
Query: 315 LFVSLSAPLSV----------LLSALLFVSL 335
L+ +L+A L L+S L F+++
Sbjct: 293 LYAALAAFLGAMAGSIKEAQTLISPLTFLAI 323
Score = 30.9 bits (70), Expect = 3.5
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 20/137 (14%)
Query: 619 VLLSAPLFVLLSAP--LFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVL 676
VLLS+P+ S +F + V L+ L AL + L L++L
Sbjct: 221 VLLSSPV----SRSEIVFGKILGAALVGLTQIALWL-LALTIATFLSLAVALAGTGLALL 275
Query: 677 LSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSA-----LLFVLLSAPLFV 731
+ LL + S L LL A L L A ++ A L L
Sbjct: 276 PAYLLLFALSLFLLGLLLY-------AALAAFLGAMAGSIKEAQTLISPLTFLAIIAFLP 328
Query: 732 SLSAPLFVLRSALLFVL 748
LS +A+ +L
Sbjct: 329 -LSFISAAPDNAVALIL 344
Score = 30.5 bits (69), Expect = 5.6
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 12/142 (8%)
Query: 613 CTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAP 672
LV L+ LL+ + LS + ++ L +L + LL LS L LL
Sbjct: 237 ILGAALVGLTQIALWLLALTIATFLSLAVALAG-TGLALLPAYLLLFALSLFLLGLLLYA 295
Query: 673 LSVLLSALLFVSP------SAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLS 726
+ S +PL L L + +AP + L +
Sbjct: 296 ALAAFLGAMAGSIKEAQTLISPLTFLAIIAFLPL-----SFISAAPDNAVALILSAIPFL 350
Query: 727 APLFVSLSAPLFVLRSALLFVL 748
P+ + L A L + S + L
Sbjct: 351 LPVAMLLRALLGGVPSLAIIAL 372
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 43.1 bits (102), Expect = 7e-04
Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 163 LSVLLSALLF-VSLSAPLSVLL----SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 217
L + L+ LLF L L L S L+ ++ L LL L + + +
Sbjct: 63 LVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAF 122
Query: 218 LLFVSLSAPLSVLLSALLFVSLSAPL---------SVLLSALLFVSLSAPLSVLLSALLF 268
LL LS V +S +F + P S+L + V L+ LL F
Sbjct: 123 LLGAILSPTDPVAVSP-IFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAF 181
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLL 327
A L L+ AL + L L LL LL + S LL LL + L+ + LL
Sbjct: 182 SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF-AAYLL 240
Query: 328 SALLFVS 334
+ L VS
Sbjct: 241 AEALGVS 247
Score = 42.3 bits (100), Expect = 0.001
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 14/194 (7%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 210
LL + L L +L+ L + PL +LL L +S + L LF+ L
Sbjct: 10 LLLLILLLGLLVSVLAGRLLLP-EIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLA 68
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 270
+ + L + L V S L+ ++ L LL L + + + LL
Sbjct: 69 ILLFAGGLE-LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAI 127
Query: 271 LSAPLSVLLSALLFVSLSAPL---------SVLLSALLFVSLSAPLSVLLSALLFVSLSA 321
LS V +S +F + P S+L + V L+ LL F A
Sbjct: 128 LSPTDPVAVSP-IFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWA 186
Query: 322 PLSVLLSALLFVSL 335
L L+ AL + L
Sbjct: 187 LLLFLIEALGGILL 200
Score = 40.7 bits (96), Expect = 0.003
Identities = 52/197 (26%), Positives = 78/197 (39%), Gaps = 19/197 (9%)
Query: 151 VSALLF-VSLSAPLSVLL----SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 205
++ LLF L L L S L+ ++ L LL L + + + LL
Sbjct: 67 LAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGA 126
Query: 206 SLSAPLSVLLSALLFVSLSAPL---------SVLLSALLFVSLSAPLSVLLSALLFVSLS 256
LS V +S +F + P S+L + V L+ LL F
Sbjct: 127 ILSPTDPVAVSP-IFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGW 185
Query: 257 APLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
A L L+ AL + L L LL LL + S LL LL + L+ + LL+ L
Sbjct: 186 ALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF-AAYLLAEAL 244
Query: 316 FVSLSAPLSVLLSALLF 332
V S L+V+++ L+
Sbjct: 245 GV--SGILAVVVAGLVL 259
Score = 35.7 bits (83), Expect = 0.12
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 4/136 (2%)
Query: 182 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSL 239
LL LL + L L +L+ L + PL +LL L +S + L LF+ L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLP-EIPLLLLLGLLGGPPGLNLISPDLELDPELFLVL 65
Query: 240 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 299
+ + L + L V S L+ ++ L LL L + + + LL
Sbjct: 66 FLAILLFAGGLE-LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLL 124
Query: 300 FVSLSAPLSVLLSALL 315
LS V +S +
Sbjct: 125 GAILSPTDPVAVSPIF 140
Score = 35.7 bits (83), Expect = 0.12
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 4/136 (2%)
Query: 198 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSL 255
LL LL + L L +L+ L + PL +LL L +S + L LF+ L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLP-EIPLLLLLGLLGGPPGLNLISPDLELDPELFLVL 65
Query: 256 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
+ + L + L V S L+ ++ L LL L + + + LL
Sbjct: 66 FLAILLFAGGLE-LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLL 124
Query: 316 FVSLSAPLSVLLSALL 331
LS V +S +
Sbjct: 125 GAILSPTDPVAVSPIF 140
Score = 32.3 bits (74), Expect = 1.3
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 4/127 (3%)
Query: 214 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSL 271
LL LL + L L +L+ L + PL +LL L +S + L LF+ L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLP-EIPLLLLLGLLGGPPGLNLISPDLELDPELFLVL 65
Query: 272 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 331
+ + L + L V S L+ ++ L LL L + + + LL
Sbjct: 66 FLAILLFAGGLE-LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLL 124
Query: 332 FVSLSAP 338
LS
Sbjct: 125 GAILSPT 131
Score = 30.3 bits (69), Expect = 6.3
Identities = 63/243 (25%), Positives = 89/243 (36%), Gaps = 60/243 (24%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPL 211
+ V L+ LL F A L L+ AL + L L LL LL +
Sbjct: 162 GVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWT 221
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF-----------------VS 254
S LL LL + L+ + LL+ L VS L+V+++ L+ S
Sbjct: 222 SPLLETLLTLLLAF-AAYLLAEALGVS--GILAVVVAGLVLGEAVRINLSPASARLRLSS 278
Query: 255 LSAPLSVLLSALLFV------SLSAPLSVLLSALLFVSLSA----PLSVLLSAL------ 298
L LL+ LLFV LS L++ L LL ++ PL V LS
Sbjct: 279 FWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKL 338
Query: 299 ---------LFVSLSAP-----LSVLLSALLF--------VSLSAPLSVLLSALLFVSLS 336
LF+S + P L++ L L + L +L S LL L+
Sbjct: 339 RDPLPWRERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVFLVILFS-LLVQGLT 397
Query: 337 APL 339
P
Sbjct: 398 LPP 400
>gnl|CDD|225892 COG3356, COG3356, Predicted membrane protein [Function unknown].
Length = 578
Score = 43.2 bits (102), Expect = 7e-04
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPL 211
A+L + + ++LL +L L + S+ L FVSL + L+ L + L A
Sbjct: 47 AVLLLGFTYLFAILLDLILVKILGINFKLKRSSFLAFVSLVIWSTFLV---LLLVLLAIR 103
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
V +S +L V+L VL L V +S SV S L P + + L V L
Sbjct: 104 PVDVSLILAVAL-----VLSFRFLIVLVSYKNSVPSSVL-------PSMNYVYSPLIVYL 151
Query: 272 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 331
++ + F+ S + +L S L L + + V+ + L + L
Sbjct: 152 KGFVAQYSLIVPFIISSLLILLLASLLYGRVLYSFVKVVNRPGVRSLGLKILEFFSNFLG 211
Query: 332 FVSLSAP 338
+ S P
Sbjct: 212 AILESNP 218
Score = 39.4 bits (92), Expect = 0.012
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
L +S ++ L VLL+ + L A+ VL L VL+S SV
Sbjct: 81 LAFVSLVIWSTFLVLLLVLLA------IRPVDVSLILAVALVLSFRFLIVLVSYKNSVPS 134
Query: 678 SALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSA 727
S L P + +PL V L + F++ S L+ +L S
Sbjct: 135 SVL-------PSMNYVYSPLIVYLKGFVAQYSLIVPFIISSLLILLLASL 177
Score = 37.8 bits (88), Expect = 0.033
Identities = 32/128 (25%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 633 LFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAP-LSVLLSALLFVSPSAP-LF 690
+ +L LF L + V + F L + +S S L LL + P
Sbjct: 48 VLLLGFTYLFAILLDLILVKILGINFKLKRSSFLAFVSLVIWSTFLVLLLVLLAIRPVDV 107
Query: 691 VLLSAPLFVLLSALLFVL----LSAPLFVLRSAL-----LFVLLSAPLFVSLSAPLFVLR 741
L+ A VL L VL S P VL S L V L + F++
Sbjct: 108 SLILAVALVLSFRFLIVLVSYKNSVPSSVLPSMNYVYSPLIVYLKGFVAQYSLIVPFIIS 167
Query: 742 SALLFVLL 749
S L+ +L
Sbjct: 168 SLLILLLA 175
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 42.3 bits (100), Expect = 7e-04
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 15/169 (8%)
Query: 159 LSAPLS---VLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
LS P+S +LL LL V L +++L+ LL ++++A L LS + L
Sbjct: 94 LSRPVSRSEILLGKLIGLLAVGLILAIAILVGVLLALAVTAALGDSLSLGDLLLLVLASV 153
Query: 213 VLLSALLFVSLSAPLSVLLSALL---FVSLSAPLSVLLSALLFVSLS-APLSVLLSALLF 268
+LL ALLF+S L +L+S +L + +A L + + + A + L L F
Sbjct: 154 LLLLALLFLS----LGLLISTVLRSTATAAAAALGLFFVLSILSGILLAGILKLEELLDF 209
Query: 269 VSLSAPLSVLLSALLFVSL-SAPLSVLLSALLFVSLSAPLSVLLSALLF 316
+ P S + L + L + LL + + + L+ +LF
Sbjct: 210 LLFLNPTSPYNTLLQEILATDDFLLSTWTNLLILLAYIAVFLALAYVLF 258
Score = 41.2 bits (97), Expect = 0.002
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ LL V L +++L+ LL ++++A L LS + L +LL ALLF+S
Sbjct: 108 LIGLLAVGLILAIAILVGVLLALAVTAALGDSLSLGDLLLLVLASVLLLLALLFLS---- 163
Query: 211 LSVLLSALL---FVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLSAPLSVLLSAL 266
L +L+S +L + +A L + + + A + L L F+ P S + L
Sbjct: 164 LGLLISTVLRSTATAAAAALGLFFVLSILSGILLAGILKLEELLDFLLFLNPTSPYNTLL 223
Query: 267 LFVSL-SAPLSVLLSALLFVSLSAPLSVLLSALLF 300
+ L + LL + + + L+ +LF
Sbjct: 224 QEILATDDFLLSTWTNLLILLAYIAVFLALAYVLF 258
Score = 35.8 bits (83), Expect = 0.088
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 25/197 (12%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALLFVS- 222
LL L S + V L + + + ++ PL + +L +
Sbjct: 25 PLLLLALAFLPSLGDDLFSGLKSAVELDSAFEYVSAGSGIIAFLIPLIAAVLGSDAIAGE 84
Query: 223 ---------LSAPLS---VLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
LS P+S +LL LL V L +++L+ LL ++++A L LS
Sbjct: 85 KERGTLKLLLSRPVSRSEILLGKLIGLLAVGLILAIAILVGVLLALAVTAALGDSLSLGD 144
Query: 268 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALL---FVSLSAPLSVLLSALLFVSLS-APL 323
+ L +LL ALLF+SL +L+S +L + +A L + + + A +
Sbjct: 145 LLLLVLASVLLLLALLFLSLG----LLISTVLRSTATAAAAALGLFFVLSILSGILLAGI 200
Query: 324 SVLLSALLFVSLSAPLS 340
L L F+ P S
Sbjct: 201 LKLEELLDFLLFLNPTS 217
Score = 32.7 bits (75), Expect = 0.88
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 17/146 (11%)
Query: 213 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALLFVS- 270
LL L S + V L + + + ++ PL + +L +
Sbjct: 25 PLLLLALAFLPSLGDDLFSGLKSAVELDSAFEYVSAGSGIIAFLIPLIAAVLGSDAIAGE 84
Query: 271 ---------LSAPLS---VLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
LS P+S +LL LL V L +++L+ LL ++++A L LS
Sbjct: 85 KERGTLKLLLSRPVSRSEILLGKLIGLLAVGLILAIAILVGVLLALAVTAALGDSLSLGD 144
Query: 316 FVSLSAPLSVLLSALLFVSLSAPLSC 341
+ L +LL ALLF+SL +S
Sbjct: 145 LLLLVLASVLLLLALLFLSLGLLIST 170
Score = 31.1 bits (71), Expect = 2.5
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL---FVSLSAPLSVLLSALLFV 205
+S + L +LL ALLF+S L +L+S +L + +A L + +
Sbjct: 138 DSLSLGDLLLLVLASVLLLLALLFLS----LGLLISTVLRSTATAAAAALGLFFVLSILS 193
Query: 206 SLS-APLSVLLSALLFVSLSAPLSVLLSALLFVSL-SAPLSVLLSALLFVSLSAPLSVLL 263
+ A + L L F+ P S + L + L + LL + + + L
Sbjct: 194 GILLAGILKLEELLDFLLFLNPTSPYNTLLQEILATDDFLLSTWTNLLILLAYIAVFLAL 253
Query: 264 SALLF 268
+ +LF
Sbjct: 254 AYVLF 258
>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane].
Length = 535
Score = 42.8 bits (101), Expect = 8e-04
Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Query: 624 PLFVLLSAPLFVLLSAPLF-VSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLF 682
PL L A ++L + L + L +ALL L+ LF L+A L+ L+ L
Sbjct: 66 PLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTP 125
Query: 683 VSPSAPLFVLLSAPL--FVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVL 740
+ LL A L F+ L+ L L L+ LL L F++ +L
Sbjct: 126 LFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLL 185
Query: 741 RSALLFVLLNERTRGWL 757
LL +LL R R L
Sbjct: 186 PLILLLLLLAPRLRRLL 202
Score = 35.9 bits (83), Expect = 0.13
Identities = 34/147 (23%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
L+L + S L P + L L +L A L +L S LL
Sbjct: 299 LLLWLLLPLLFFSLAAGKLP--PYILPAYPALAALAGLGWLLL--AALLLLYSLRRLGLL 354
Query: 678 SALLFVSPSAPLFVLLSAP-------------LFVLLSALLFVLLSAPLFVLRSALLFV- 723
+ +L ++ + L +L + + A L + L A +LR+ LL
Sbjct: 355 ALILGLTAAVALALLFLLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVWA 414
Query: 724 -LLSAPLFVSLSAPLFVLRSALLFVLL 749
L PL +L L++L AL L
Sbjct: 415 GALLLPLLWALLGGLYLLNRALPETGL 441
Score = 35.1 bits (81), Expect = 0.22
Identities = 34/148 (22%), Positives = 48/148 (32%), Gaps = 20/148 (13%)
Query: 618 LVLLSAPLFVLLSAPLF----------VLLSAPLFVSLS--------APLFVLRSALLFV 659
L+A L L+ LF +LL PLF + F+ + L
Sbjct: 93 AGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTLALALLY 152
Query: 660 LLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSA 719
L L L L L F++ +L L +LL+ L LL L
Sbjct: 153 LALRARGKLKWLLLLGLALGLGFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLWL-GL 211
Query: 720 LLFVLLSAPLFVSLSAPLFVLRSALLFV 747
LL +L P + F LF+
Sbjct: 212 LLGLLPVLPWLL-AIQAQFAPYFGHLFL 238
Score = 34.8 bits (80), Expect = 0.28
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVS 684
S PL++ L L + L + + L L V L L LL LLF S
Sbjct: 252 GDEHHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVALLFLLLWLLLPLLFFS 311
Query: 685 PSA----PLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVL 740
+A P + L L +L A L +L S LL+ L ++ + L +L
Sbjct: 312 LAAGKLPPYILPAYPALAALAGLGWLLL--AALLLLYSLRRLGLLALILGLTAAVALALL 369
Query: 741 RS 742
Sbjct: 370 FL 371
Score = 33.6 bits (77), Expect = 0.60
Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 40/226 (17%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLS---------APLSVLLS 200
+ L +L+A L L+ LF L+A L+ +LL LF + A L
Sbjct: 89 PSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTLAL 148
Query: 201 ALLFVSLSAPLSVLLSALLFVSLSA------PLSVLLSALLFVSLSAP--------LSVL 246
ALL+++L A + LL ++L P ++LL +L + L AP L +
Sbjct: 149 ALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLW 208
Query: 247 LSALLFVSLSAPLSVLLSAL---------LFVSLSAPLSVLLSALLFVS------LSAPL 291
L LL + P + + A L + S S L L
Sbjct: 209 LGLLLGLLPVLPWLLAIQAQFAPYFGHLFLTFGWEEDFQRVASGDEHHSGPLWLYLLVLL 268
Query: 292 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 337
++ LL + + L L V+L L LL LLF SL+A
Sbjct: 269 LGVIPWLLLLPGALRLRWAKRGKLAVALLFLLLWLLLPLLFFSLAA 314
Score = 33.2 bits (76), Expect = 0.76
Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 9/191 (4%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 209
S L++ L L ++ LL + + L L V+L L LL LLF SL+A
Sbjct: 255 HHSGPLWLYLLVLLLGVIPWLLLLPGALRLRWAKRGKLAVALLFLLLWLLLPLLFFSLAA 314
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
L +L L+ L + + L L L ++L L+ ++ L
Sbjct: 315 --GKLPPYILP--AYPALAALAGLGWLLLAALLLLYSLRRLGLLALILGLTAAVALALLF 370
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS-----APLSVLLSALLFVSLSAPLS 324
L +L ++ A L+ L L+ + L L +L L
Sbjct: 371 LLGPANLPPKGLILLFAVLAVLAALALWLVAARRLLRNKLLVWAGALLLPLLWALLGGLY 430
Query: 325 VLLSALLFVSL 335
+L AL L
Sbjct: 431 LLNRALPETGL 441
Score = 30.5 bits (69), Expect = 5.4
Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 19/209 (9%)
Query: 619 VLLSAPLFVLLSAPLFVL---LSAPLFVSLSAPLFVLRSALLFV----LLSAPLFVLLSA 671
+ L L +L P + AP F L S PL++ L
Sbjct: 207 LWLGLLLGLLPVLPWLLAIQAQFAPYFGHLFLTFGWEEDFQRVASGDEHHSGPLWLYLLV 266
Query: 672 PLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFV 731
L ++ LL + + L + + + ++ L +L + S L P +
Sbjct: 267 LLLGVIPWLLLLPGA--LRLRWAKRGKLAVALLFLLLWLLLPLLFFSLAAGKLP--PYIL 322
Query: 732 SLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKL 791
L L +L L++ S LI + L+ P L
Sbjct: 323 PAYPALAALAGLGWLLLAAL-----LLLYSLRRLGLLALILGLTAAVALALLFLLGPANL 377
Query: 792 TSILVPYNMLMCALNLYIAIELLVASTRL 820
+L+ A+ +A L
Sbjct: 378 PP---KGLILLFAVLAVLAALALWLVAAR 403
>gnl|CDD|223731 COG0658, ComEC, Predicted membrane metal-binding protein [General
function prediction only].
Length = 453
Score = 42.5 bits (100), Expect = 0.001
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 16/186 (8%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP-------LSVLLSALLFV 205
ALL + L L + + L + S L++ L A L +
Sbjct: 250 ALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVMLALALLASLSL 309
Query: 206 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV------SLSAPL 259
+ + +LL + + + L APL++L S ++S A +++L + LF L L
Sbjct: 310 RNLSSIFILLLSAIAILLLAPLAIL-SLGFWLSFLAVAALILWSQLFRLLGLSWPLPITL 368
Query: 260 SVLLSA--LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 317
++L + L+ L LL L+ L + +S+ F+ +++ +L
Sbjct: 369 ALLATLPLLILQFGRLGLLGLLLNLIVSPLISLISLPGLLANFLLSPLVSFLIVPLILLG 428
Query: 318 SLSAPL 323
L APL
Sbjct: 429 LLLAPL 434
Score = 40.2 bits (94), Expect = 0.005
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 9/152 (5%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFV-SLSAPLFVLRSALLFVLLSAPLFVLLSAPLS 674
+ + +F+LL + + +LL APL + SL L L A L + + LS PL
Sbjct: 306 SLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFLAVAALILWSQLFRLLGLSWPLP 365
Query: 675 VLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLS 734
+ L+ L + F L L LL L+ L + + + LL L +PL L
Sbjct: 366 ITLALLATLPLLILQFGRL--GLLGLLLNLIVSPLISLISLP--GLLANFLLSPLVSFLI 421
Query: 735 APL----FVLRSALLFVLLNERTRGWLMVDSP 762
PL +L L+ L G +
Sbjct: 422 VPLILLGLLLAPLLIGAALARVRPGVFGLIQL 453
Score = 38.2 bits (89), Expect = 0.021
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 148 CTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 207
+ A L + + + +LL + + + L APL++ LS ++S A +++L + LF L
Sbjct: 300 ALALLASLSLRNLSSIFILLLSAIAILLLAPLAI-LSLGFWLSFLAVAALILWSQLFRLL 358
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
L L + + PL L+ L LL L+ L + +S+
Sbjct: 359 GLSW--PLPITLALLATLPL------LILQFGRLGLLGLLLNLIVSPLISLISLPGLLAN 410
Query: 268 FVSLSAPLSVLLSALLFVSLSAPL 291
F+ +++ +L L APL
Sbjct: 411 FLLSPLVSFLIVPLILLGLLLAPL 434
Score = 35.6 bits (82), Expect = 0.17
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLF-VSLSAPLFVLRSALLFVLLS--APLFVLLSAP 672
L+ +S LL+ LL + + PL + AL + +L+ +P +
Sbjct: 239 AHLLAISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYAILTGFSPSVLRALVM 298
Query: 673 LSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
L++ L A L + + +F+LL + + +LL A L +L F L + L+
Sbjct: 299 LALALLASLSLRNLSSIFILLLSAIAILLLAPLAILS--LGFWLSFLAVAALILWSQLFR 356
Query: 733 LSAPLFVLRSALL 745
L + L L
Sbjct: 357 LLGLSWPLPITLA 369
Score = 33.6 bits (77), Expect = 0.55
Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 170 LLFVSLSAPLSVLLSALLFVSLSAP----LSVLLSALLFVSLSAPLSVLLSALLF---VS 222
L + A +V +A++ SL + L++ LL++ L PL LL ALL
Sbjct: 165 LGAQGIGALGTVFQAAIISRSLPRFLRSRIRRLVAQLLYLLLLGPLGGLLLALLLGELSG 224
Query: 223 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 282
L L AL L A +S L ALL + L L + + L
Sbjct: 225 LFKELWEAFRALGLAHLLA-ISGLHVALLAGTFLFLLRRLGRWIGPALPLLLGLLALFYA 283
Query: 283 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCT 342
+ S + L L L++ LS++ + LSA +LL+ L +SL LS
Sbjct: 284 ILTGFSPSVLRALVMLALALLASLSLRNLSSIFILLLSAIAILLLAPLAILSLGFWLSFL 343
Query: 343 PICLTEC 349
+
Sbjct: 344 AVAALIL 350
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 41.5 bits (97), Expect = 0.002
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 159 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 218
L +P+S L L + ++ L++ L+ + ++ L V L L L +LL L
Sbjct: 124 LVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGV---PFLGSLLLLLLLLLLLLL 180
Query: 219 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 278
V+L LS + L + + ++L + PL +L + L +S PL+
Sbjct: 181 ATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYA 240
Query: 279 LSALLFVSL-SAPLSVLLSALLFVSLSAPLSVLLSALLF 316
+ AL +V L + +LL + L A + +LL LL
Sbjct: 241 IDALRYVYLGGWRNDGIWISLLILLLFAVVFLLLGLLLL 279
Score = 41.5 bits (97), Expect = 0.002
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 4/159 (2%)
Query: 175 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 234
L +P+S L L + ++ L++ L+ + ++ L V L L L +LL L
Sbjct: 124 LVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGV---PFLGSLLLLLLLLLLLLL 180
Query: 235 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 294
V+L LS + L + + ++L + PL +L + L +S PL+
Sbjct: 181 ATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYA 240
Query: 295 LSALLFVSL-SAPLSVLLSALLFVSLSAPLSVLLSALLF 332
+ AL +V L + +LL + L A + +LL LL
Sbjct: 241 IDALRYVYLGGWRNDGIWISLLILLLFAVVFLLLGLLLL 279
Score = 38.0 bits (88), Expect = 0.019
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 6/190 (3%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 213
++ L + LL L +L +++ P +L+S L S ++
Sbjct: 52 IIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSAL 111
Query: 214 LLSALLFV---SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 270
L +P+S L L + ++ L++ L+ + ++ L V L
Sbjct: 112 FREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGV---PFLGSL 168
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L L +LL L V+L LS + L + + ++L + PL +L + L
Sbjct: 169 LLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWL 228
Query: 331 LFVSLSAPLS 340
+S PL+
Sbjct: 229 QGISYINPLT 238
Score = 37.6 bits (87), Expect = 0.023
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 8/182 (4%)
Query: 161 APLSVLLSALLFVSLSAPLSVLLSALLFV---SLSAPLSVLLSALLFVSLSAPLSVLLSA 217
P +L+S L S ++ L +P+S L L + ++ L++
Sbjct: 91 VPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAG 150
Query: 218 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 277
L+ + ++ L V L L L +LL L V+L LS + L + + +
Sbjct: 151 LVLLVIAFLLGV---PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLL 207
Query: 278 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL--LFVSLSAPLSVLLSALLFVSL 335
+L + PL +L + L +S PL+ + AL +++ + +S L+ +
Sbjct: 208 ILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRNDGIWISLLILLLF 267
Query: 336 SA 337
+
Sbjct: 268 AV 269
Score = 35.3 bits (81), Expect = 0.14
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 186 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 245
++ L + LL L +L +++ P +L+S L S ++
Sbjct: 52 IIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSAL 111
Query: 246 -------LLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSA 297
L LL +S +L + V S ++L + F+ L LL
Sbjct: 112 FREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLL 171
Query: 298 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTP 343
LL + L +V L L +S A + ++ + L PL
Sbjct: 172 LLLLLLLLLATVALG--LLLSTFAKSQLQCASAVGNLLILPLGFLS 215
Score = 34.1 bits (78), Expect = 0.29
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 7/141 (4%)
Query: 151 VSALLFVSLSAPLSVLLSALLF--VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV--- 205
V L+ SL A L +L+ A L L + L +LL LL + + L +LLS
Sbjct: 139 VPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQ 198
Query: 206 -SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL-SAPLSVLL 263
+ + ++L + PL +L + L +S PL+ + AL +V L +
Sbjct: 199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRNDGIW 258
Query: 264 SALLFVSLSAPLSVLLSALLF 284
+LL + L A + +LL LL
Sbjct: 259 ISLLILLLFAVVFLLLGLLLL 279
Score = 32.2 bits (73), Expect = 1.3
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 14/145 (9%)
Query: 620 LLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFV-----------L 668
LL L + +++ P +L S L + S + L
Sbjct: 64 LLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERL 123
Query: 669 LSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALL-FVLLSAPLFVLRSALLFVLLSA 727
L +P+S L L + P + L++ + ++++ LL L + L +L LL +L +
Sbjct: 124 LVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATV 183
Query: 728 PL--FVSLSAPLFVLRSALLFVLLN 750
L +S A + ++ + LL
Sbjct: 184 ALGLLLSTFAKSQLQCASAVGNLLI 208
Score = 29.5 bits (66), Expect = 9.5
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 619 VLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVL--LSAPLSVL 676
LL L +LL V L L +S A + ++ + LL PL L + PL +L
Sbjct: 167 SLLLLLLLLLLLLLATVALG--LLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELL 224
Query: 677 LSALLFVSPSAPLFVLLSA---------PLFVLLSALLFVLLSAPLFVLRSALLF 722
+ L +S PL + A + +LL +LL A +F+L LL
Sbjct: 225 PAWLQGISYINPLTYAIDALRYVYLGGWRNDGIWISLLILLLFAVVFLLLGLLLL 279
>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 738
Score = 41.6 bits (98), Expect = 0.002
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 5/180 (2%)
Query: 161 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 220
+ LF+ L + +LL+ L +L L L + ++L ++ +L
Sbjct: 177 LLWLAFSTTELFLILFFLIFLLLAVL--PALRWRLPARLRPYVDLTLLFGNPLVAFSLQA 234
Query: 221 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALLFVSLSAPLSVLL 279
+ + P ++ SAL +L L+ LL+ +SL S+L AL FV+L+ PL+ L
Sbjct: 235 LLVHDPYALAWSALGLAALYLALAFLLARRARLSLRLLAYSLLALALAFVTLAIPLA--L 292
Query: 280 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 339
S A L L L L ++L + L++LL L + L
Sbjct: 293 SGRWTSLAWALEGAALLWLGVRQRRRLLRAFGLLLQLLALLSLLALLLLGYLNSAFLTGL 352
Score = 38.9 bits (91), Expect = 0.015
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Query: 619 VLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLS 678
L + LF++L +F+ L+ + + L +L PL
Sbjct: 173 FLWGLLWLAFSTTELFLILFFLIFLLLAVLPALRWRLPARLRPYVDLTLLFGNPLVAFSL 232
Query: 679 ALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPL 737
L V L + L L AL F+L LR +L A FV+L+ PL
Sbjct: 233 QALLVHDPYALA-WSALGLAALYLALAFLLARRARLSLRLLAYSLLALALAFVTLAIPL 290
Score = 36.2 bits (84), Expect = 0.10
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 153 ALLFVSLSAPLSVLLSAL-LFVSL---SAPLSVL-----LSALLFVSL-SAPLSVLLSAL 202
LL +++ L VL++A + ++L L+VL +A L VS S VL S
Sbjct: 86 GLLPPTVAFALLVLVTAGTVVLALLQNGPLLAVLGLLGGFAAPLLVSTGSGNYVVLFSYY 145
Query: 203 LFVSLSA----------PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 252
++ L++L F+ + LF+ L + +LL+ L
Sbjct: 146 ALLNAGILALAWKKKWRWLNLLGFVGTFL-WGLLWLAFSTTELFLILFFLIFLLLAVL-- 202
Query: 253 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 312
+L L L + ++L ++ +L + + P ++ SAL +L L+ LL+
Sbjct: 203 PALRWRLPARLRPYVDLTLLFGNPLVAFSLQALLVHDPYALAWSALGLAALYLALAFLLA 262
Query: 313 ALLFVSLSAPL-SVLLSALLFVSLSAPLS 340
+SL S+L AL FV+L+ PL+
Sbjct: 263 RRARLSLRLLAYSLLALALAFVTLAIPLA 291
Score = 35.8 bits (83), Expect = 0.15
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 4/183 (2%)
Query: 166 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF-VSLSAPLSVLLSALLFVS-L 223
L A + L+A ++ L +L ++LL L SL A L LL L
Sbjct: 409 LALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWLLLAYGL 468
Query: 224 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSA 281
+ L + LL L + +AL L L+ +L + L
Sbjct: 469 ALALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVLTRYLLWGGDGLAGAYSLWEAALLT 528
Query: 282 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSC 341
LL ++L+ A + A +LL +L A L + L + +APL
Sbjct: 529 LLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGGAAPLGF 588
Query: 342 TPI 344
PI
Sbjct: 589 LPI 591
Score = 32.3 bits (74), Expect = 1.8
Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 15/201 (7%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF-VSLSAPLSVLLSALLFVSL 207
T A + L+A ++ L +L ++LL L SL A L LL
Sbjct: 408 TLALAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWLLLAYG 467
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
A +L + L + L +A L + L L + L A L A L
Sbjct: 468 LALALLLAALRLLRRDLQLRAWLEAAALHLWLLL-LVLTRYLLWGGDGLAGAYSLWEAAL 526
Query: 268 FVSLSAPLSVLLSALLFVSLS-------------APLSVLLSALLFVSLSAPLSVLLSAL 314
L+ L+++ APL+ LL+ LL + + L
Sbjct: 527 LTLLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGGAAPL 586
Query: 315 LFVSLSAPLSVLLSALLFVSL 335
F+ + PL + L L
Sbjct: 587 GFLPILNPLLLAYLLLAPALL 607
Score = 32.3 bits (74), Expect = 1.8
Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 5/179 (2%)
Query: 159 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 218
L+ L + LL L + +AL L L + L A L A
Sbjct: 468 LALALLLAALRLLRRDLQLRAWLEAAALHLWLLL--LVLTRYLLWGGDGLAGAYSLWEAA 525
Query: 219 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 278
L L+ L L+ + V +A + APL+ LL+ LL +
Sbjct: 526 LLTLLAL---ALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLALLLLENPLLSGIGG 582
Query: 279 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 337
+ L F+ + PL + L L+ L L + + +L + V +AL F+ L+
Sbjct: 583 AAPLGFLPILNPLLLAYLLLAPALLALWLRRLATPIRLKALRPAVLVAAAALGFLWLTL 641
Score = 31.9 bits (73), Expect = 2.0
Identities = 37/166 (22%), Positives = 52/166 (31%), Gaps = 11/166 (6%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLF--VLLSAPLSV 675
L L L + L L V + L L + + PL +LL+ L++
Sbjct: 411 LAAQVLVLAALARRYVAPRLRWALKVLAALLLLRLTALPSLQAGTHPLAHWLLLAYGLAL 470
Query: 676 LLS-ALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLS 734
L A L + + L LL VL R L A +
Sbjct: 471 ALLLAALRLLRRDLQLRAWLEAAALHLWLLLLVL-------TRYLLWGGDGLAGAYSLWE 523
Query: 735 APLFVLRS-ALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIG 779
A L L + AL V L R W +V L L L+ +
Sbjct: 524 AALLTLLALALALVYLYRRRARWPLVYRAAAYLLLGLAPLAALLAL 569
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 40.2 bits (95), Expect = 0.003
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 211 LSVLLSAL--LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 268
L +LL+A V + L LL L +V L PL++L+ L S S + L
Sbjct: 13 LGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALL 72
Query: 269 VSLSAPLSVLLSALLFVSLSAPL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 325
+ + L +L V + + + L +A +F LS L L + L L
Sbjct: 73 FLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLS--LYALTTKRDLSFLGGFLFA 130
Query: 326 LLSALLFVSL 335
L L+ SL
Sbjct: 131 GLIGLIVASL 140
Score = 38.3 bits (90), Expect = 0.011
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 214
V + L LL L +V L PL++L+ L S S + L + +
Sbjct: 23 YLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEGLT 82
Query: 215 LSALLFVSLSAPL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
L +L V + + + L +A +F LS L L + L L L L+ SL
Sbjct: 83 LGPILLVYTAGSIILQAFLGTAAIFGGLS--LYALTTKRDLSFLGGFLFAGLIGLIVASL 140
Query: 272 ------SAPLSVLLSA---LLFVSLSA 289
S+ LS+ +SA L+F L
Sbjct: 141 VNIFLPSSALSLAISAIGVLIFSGLIL 167
Score = 35.2 bits (82), Expect = 0.10
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
+ L +V L PL++L+ L S S + L + + L +L V +
Sbjct: 33 QLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEGLTLGPILLVYTA 92
Query: 209 APL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL------SAPL 259
+ + L +A +F LS L L + L L L L+ SL S+ L
Sbjct: 93 GSIILQAFLGTAAIFGGLS--LYALTTKRDLSFLGGFLFAGLIGLIVASLVNIFLPSSAL 150
Query: 260 SVLLSA---LLFVSLSA 273
S+ +SA L+F L
Sbjct: 151 SLAISAIGVLIFSGLIL 167
Score = 29.8 bits (68), Expect = 5.4
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 259 LSVLLSAL--LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 316
L +LL+A V + L LL L +V L PL++L+ L S S + L
Sbjct: 13 LGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALL 72
Query: 317 VSLSAPLSVLLSALLFVSLSAPL 339
+ + L +L V + +
Sbjct: 73 FLFTLLEGLTLGPILLVYTAGSI 95
>gnl|CDD|217721 pfam03772, Competence, Competence protein. Members of this family
are integral membrane proteins with 6 predicted
transmembrane helices. Some members of this family have
been shown to be essential for bacterial competence in
uptake of extracellular DNA. These proteins may
transport DNA across the cell membrane. These proteins
contain a highly conserved motif in the amino terminal
transmembrane region that has two histidines that may
form a metal binding site.
Length = 270
Score = 40.6 bits (96), Expect = 0.003
Identities = 52/174 (29%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 221
PL L A L + L PL++L S LS L A L + L+ L LS L
Sbjct: 100 PLDSLALAALLLLLIDPLALL-------SAGFQLSFLAVAGLLL-LAPRLQKRLSRLSPR 151
Query: 222 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 281
L+ L V L+A L + PL + SL + L+ LL+ L + PL++L
Sbjct: 152 LLALLLLVSLAAQLA---TLPLLLYHFGQ--FSLVSLLANLLAVPLVSFVVLPLALLALL 206
Query: 282 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 335
L A L +L A + L L L++L SL L LL+ L
Sbjct: 207 LSLFPPLAAL-LLWLADWLLELLLALLEWLASLPGASLWVGRPSLWLLLLYYLL 259
Score = 37.2 bits (87), Expect = 0.030
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 25/191 (13%)
Query: 161 APLSVLLSALLFVSLS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 219
A L LL LL+ L+ V+ + ++ + ++L ALL +PL L A L
Sbjct: 57 AALLALLFLLLYALLAGFSPPVVRALIMLL-------LVLLALLLGRRISPLDSLALAAL 109
Query: 220 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-------LSAPLSVLLSALLFVSLS 272
+ L PL++L S LS L A L + LS LL+ LL VSL+
Sbjct: 110 LLLLIDPLALL-------SAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLALLLLVSLA 162
Query: 273 APLSVL-LSALLF--VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
A L+ L L F SL + L+ LL+ L + PL++L L A L + L+
Sbjct: 163 AQLATLPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLAALLLWLAD 222
Query: 330 LLFVSLSAPLS 340
L L A L
Sbjct: 223 WLLELLLALLE 233
Score = 36.8 bits (86), Expect = 0.047
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-------LSAPLSVLLSAL 202
+S L ++L+A L +L+ L +S LS L A L + LS LL+ L
Sbjct: 97 RISPLDSLALAALLLLLIDPLALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLALL 156
Query: 203 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 262
L VSL+A L+ L L + +S+L + LL V L + + + L+ L + P
Sbjct: 157 LLVSLAAQLATLPLLLYHFGQFSLVSLLAN-LLAVPLVSFVVLPLALLALLLSLFP---P 212
Query: 263 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 316
L+ALL L +LL+ L +++ S P + L + L +LL LL
Sbjct: 213 LAALLLWLADWLLELLLALLEWLA-SLPGASLWVGRPSLWLLLLYYLLLLLLLL 265
Score = 35.6 bits (83), Expect = 0.11
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 617 CLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVL--------RSALLFV---LLSAPL 665
L+LL+ L LS LL+ L VSL+A L L + +L+ + LL+ PL
Sbjct: 133 GLLLLAPRLQKRLSRLSPRLLALLLLVSLAAQLATLPLLLYHFGQFSLVSLLANLLAVPL 192
Query: 666 FVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLL 725
+ PL++L L P A L + L+ L LL ALL L S P L + L
Sbjct: 193 VSFVVLPLALLALLLSLFPPLAALLLWLADWLLELLLALLEWLASLPGASLWVGRPSLWL 252
Query: 726 SAPLFVSLSAPLFVLR 741
++ L L +L
Sbjct: 253 LLLYYLLLLLLLLLLL 268
Score = 33.7 bits (78), Expect = 0.39
Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 166 LLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
L A L LL LL+ L+ V+ + ++ + ++L ALL
Sbjct: 46 RLLLRGPPRKLAALLALLFLLLYALLAGFSPPVVRALIMLL-------LVLLALLLGRRI 98
Query: 225 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-------LSAPLSV 277
+PL L A L + L PL++L S LS L A L + LS
Sbjct: 99 SPLDSLALAALLLLLIDPLALL-------SAGFQLSFLAVAGLLLLAPRLQKRLSRLSPR 151
Query: 278 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 337
LL+ LL VSL+A L+ L L + +S+L + LL V L + + + L+ L +
Sbjct: 152 LLALLLLVSLAAQLATLPLLLYHFGQFSLVSLLAN-LLAVPLVSFVVLPLALLALLLSLF 210
Query: 338 P 338
P
Sbjct: 211 P 211
>gnl|CDD|220340 pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor
(Caa3_CtaG). Members of this family are the CtaG
protein required for assembly of active cytochrome c
oxidase of the caa3 type, as found in Bacillus subtilis.
Length = 241
Score = 39.9 bits (94), Expect = 0.003
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
ALL+++ S+PL AL + L + + A + L AP+++LL AL +
Sbjct: 31 ALLYLATSSPLDAYGHALFSAHMVQHLLLSMVAPPLLVLGAPVTLLLRALPPRGRRRLGA 90
Query: 213 VLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP-------LSVLLS 264
L S L F++ L + ++ L L +LS+ + LLS
Sbjct: 91 ALHSRPLRFLTHPLVALALFAGSFYL-------WYLPPLFDAALSSHWGHWLMHVHFLLS 143
Query: 265 ALLFV-------SLSAPLSVLLSALLFVSLSAPLSVLLSALL 299
LLF + LS L LL++ + PL L ALL
Sbjct: 144 GLLFWWPVLGPDPVPRRLSYLG-RLLYLFAAMPLHAFLGALL 184
Score = 39.9 bits (94), Expect = 0.003
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 185 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 244
ALL+++ S+PL AL + L + + A + L AP+++LL AL +
Sbjct: 31 ALLYLATSSPLDAYGHALFSAHMVQHLLLSMVAPPLLVLGAPVTLLLRALPPRGRRRLGA 90
Query: 245 VLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP-------LSVLLS 296
L S L F++ L + ++ L L +LS+ + LLS
Sbjct: 91 ALHSRPLRFLTHPLVALALFAGSFYL-------WYLPPLFDAALSSHWGHWLMHVHFLLS 143
Query: 297 ALLFV-------SLSAPLSVLLSALLFVSLSAPLSVLLSALL 331
LLF + LS L LL++ + PL L ALL
Sbjct: 144 GLLFWWPVLGPDPVPRRLSYLG-RLLYLFAAMPLHAFLGALL 184
Score = 36.9 bits (86), Expect = 0.034
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 633 LFVLLSAPLFVSLSAPLFVLRSALLFV------LLS--APLFVLLSAPLSVLLSALLFVS 684
F+L A L+++ S+PL AL LLS AP ++L AP+++LL AL
Sbjct: 25 AFLLGLALLYLATSSPLDAYGHALFSAHMVQHLLLSMVAPPLLVLGAPVTLLLRALPPRG 84
Query: 685 PSAPLFVLLSAPL---------FVLLSALLFVLLSAPLF--VLRSALLFVLLSAPLFVS 732
L S PL L + ++ PLF L S L+ +S
Sbjct: 85 RRRLGAALHSRPLRFLTHPLVALALFAGSFYLWYLPPLFDAALSSHWGHWLMHVHFLLS 143
Score = 34.2 bits (79), Expect = 0.27
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 24/132 (18%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSA 209
V+ L V L AP+++LL AL + L S L F++ L + ++
Sbjct: 62 VAPPLLV-LGAPVTLLLRALPPRGRRRLGAALHSRPLRFLTHPLVALALFAGSFYL---- 116
Query: 210 PLSVLLSALLFVSLSAP-------LSVLLSALLFV-------SLSAPLSVLLSALLFVSL 255
L L +LS+ + LLS LLF + LS L LL++
Sbjct: 117 ---WYLPPLFDAALSSHWGHWLMHVHFLLSGLLFWWPVLGPDPVPRRLSYLG-RLLYLFA 172
Query: 256 SAPLSVLLSALL 267
+ PL L ALL
Sbjct: 173 AMPLHAFLGALL 184
Score = 29.5 bits (67), Expect = 8.3
Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSA---------------PLFVSLSAPLF--VLRSALLFVL 660
L+ + AP ++L AP+ +LL A L+ PL L + ++
Sbjct: 58 LLSMVAPPLLVLGAPVTLLLRALPPRGRRRLGAALHSRPLRFLTHPLVALALFAGSFYLW 117
Query: 661 LSAPLFVLLSA--------PLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAP 712
PLF + + LLS LLF P L L LL++ + P
Sbjct: 118 YLPPLFDAALSSHWGHWLMHVHFLLSGLLFWWPV--LGPDPVPRRLSYLGRLLYLFAAMP 175
Query: 713 LFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLM 758
L ALL + PL+ + L R L L +++ G +M
Sbjct: 176 LHAFLGALL-MFAPTPLYATYYGAL--GRPWGLDPLADQQLGGLIM 218
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen
and teichoic acid [General function prediction only].
Length = 480
Score = 40.5 bits (95), Expect = 0.004
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 4/181 (2%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ ++ + L+ + LLF A + +L L L L L S+LL +L
Sbjct: 302 LISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQ-ALGKQ 360
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 270
+LL +L+ L+ L++LL + +A + + AL + L+
Sbjct: 361 RLLLLISLISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYF 420
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L L+ L LL + L LL ALL + L +L LL + ++ L +LL L
Sbjct: 421 LLLKLAALALLLLAI---LGLLELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLL 477
Query: 331 L 331
L
Sbjct: 478 L 478
Score = 39.4 bits (92), Expect = 0.010
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 4/175 (2%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
+LL ++ + L+ + LLF A + +L L L L L S+LL +L
Sbjct: 300 LLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQ-ALG 358
Query: 225 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 284
+LL +L+ L+ L++LL + +A + + AL + L+
Sbjct: 359 KQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFS 418
Query: 285 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 339
L L+ L LL + L LL ALL + L +L LL + ++ L
Sbjct: 419 YFLLLKLAALALLLLAI---LGLLELLVALLLLLLVLLALGILLFLLLLLIALVL 470
Score = 37.0 bits (86), Expect = 0.049
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 4/166 (2%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 209
P+ LLF A + +L L L L L S+LL +L +LL +L+ L+
Sbjct: 317 PIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQ-ALGKQRLLLLISLISALLNL 375
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
L++LL + +A + + AL + L+ L L+ L LL +
Sbjct: 376 ILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAALALLLLAI 435
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
L LL ALL + L +L LL + ++ L +LL LL
Sbjct: 436 ---LGLLELLVALLLLLLVLLALGILLFLLLLLIALVLILLLRLLL 478
Score = 35.5 bits (82), Expect = 0.14
Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSA---PLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLS 674
L+ S L +L+S P + L P+ L + + +L +L A LF+ L + S
Sbjct: 292 LLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTS 351
Query: 675 VLLSA-------LLFVSPSAPLFVLLSAPLFVLLS----ALLFVLLSAPLFVLRSALLFV 723
LL A LL SA L ++L+ L A+ + A +L L
Sbjct: 352 SLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLR 411
Query: 724 LLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTI 778
L+ L L L LL +L L++ + L++L ++ I
Sbjct: 412 LVRTKFSYFLLLKLAALALLLLAILGLLELLVALLLLLLVLLALGILLFLLLLLI 466
Score = 30.5 bits (69), Expect = 5.6
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 616 ICLVLLSAPLFVLLSAP--------LFVLLSAPLFVSLSAPLFVL-------RSALLFVL 660
+ L+LL+ P+ LL L +L A LF+SL + L R LL L
Sbjct: 309 LGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISL 368
Query: 661 LSAPLFVLLSAPLSVLLS----ALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVL 716
+SA L ++L+ L A+ S A +L L+ L L L
Sbjct: 369 ISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRTKFSYFLLLKLAAL 428
Query: 717 RSALLFVLLSAPLFVSLSAPLFVLRSALLFVLL 749
LL +L L V+L L VL + + + L
Sbjct: 429 ALLLLAILGLLELLVALLLLLLVLLALGILLFL 461
Score = 30.5 bits (69), Expect = 5.7
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 191 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 250
L + L ++ SAL V A LS + +L L L LL +S+ A L +LL A
Sbjct: 258 LVSLLLIVASALNRVLFPA-LSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAP 316
Query: 251 LFVSL-----SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 305
++L A + +L L L L L S+LL L +L+S + +
Sbjct: 317 PIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLI 376
Query: 306 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSC 341
+L+ + + + +++ L + L
Sbjct: 377 LNLLLIPRFGLIGAAIATASVIALALLLFYILRLRL 412
>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 40.4 bits (95), Expect = 0.006
Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 159 LSAPLSVLLSALLFVS------LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
L L + A+L S L L + PL ++ ++ L SL L
Sbjct: 8 LVRLLVPQILAILVFLSGVILLFSGATPSLDERLRLLPRIVPLPLIEASHLTASLLGALL 67
Query: 213 VLLS--ALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
+LL+ + + ++++ L V SL+ L+ + +A+LF+ + +L F
Sbjct: 68 LLLARGLRKRLKRAWIAALIVLILGLVLSLAKGLAWIEAAVLFLIA---VLLLAGRRAFY 124
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
S L +S + L+ F S L + SAP +
Sbjct: 125 RKSLLLVQSISPGWLAAFIVALAAANWLGGFAYADVEYSNDLWWEFPFTGSAPRFLRALL 184
Query: 330 LLFVSLSA 337
+F++L A
Sbjct: 185 GVFIALIA 192
Score = 39.6 bits (93), Expect = 0.009
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS--ALLFVSLSAPLSVLLSALLFV- 205
+ L + PL ++ ++ L SL L +LL+ + + ++++ L V
Sbjct: 36 SLDERLRLLPRIVPLPLIEASHLTASLLGALLLLLARGLRKRLKRAWIAALIVLILGLVL 95
Query: 206 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 265
SL+ L+ + +A+LF+ + +L F S L +S + L+
Sbjct: 96 SLAKGLAWIEAAVLFLIA---VLLLAGRRAFYRKSLLLVQSISPGWLAAFIVALAAANWL 152
Query: 266 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 325
F S L + SAP L ALL V + A +++ + ALL + P
Sbjct: 153 GGFAYADVEYSNDLWWEFPFTGSAP--RFLRALLGVFI-ALIALGIWALLRPRATPPRPP 209
Score = 37.7 bits (88), Expect = 0.031
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 27/156 (17%)
Query: 639 APLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLF 698
+ L V + + V LS + + A L L + PL ++ ++ L
Sbjct: 1 LAPAIDWLVRLLVPQILAILVFLSGVILLFSGA-TPSLDERLRLLPRIVPLPLIEASHLT 59
Query: 699 VLLSALLFVLLS---------APLFVLRSALLFVLLSAPLFVSLS-----APLFVL---- 740
L L +LL+ A + L +L ++LS ++ + VL
Sbjct: 60 ASLLGALLLLLARGLRKRLKRAWIAALIVLILGLVLSLAKGLAWIEAAVLFLIAVLLLAG 119
Query: 741 -----RSALLFVLLNERTRGWLMVDSPIPTLAYTLI 771
R +LL V + GWL + A +
Sbjct: 120 RRAFYRKSLLLVQ--SISPGWLAAF-IVALAAANWL 152
Score = 33.1 bits (76), Expect = 0.91
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 26/153 (16%)
Query: 620 LLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPL--SVLL 677
L L + A L L L S + P L L + PL ++ ++ L S+L
Sbjct: 7 WLVRLLVPQILAILVFLSGVILLFSGATPS--LDERLRLLPRIVPLPLIEASHLTASLLG 64
Query: 678 SALLFVSPS----------APLFVLLSAPLFVL-------LSALLF-----VLLSAPLFV 715
+ LL ++ A L VL+ + L +A+LF +L F
Sbjct: 65 ALLLLLARGLRKRLKRAWIAALIVLILGLVLSLAKGLAWIEAAVLFLIAVLLLAGRRAFY 124
Query: 716 LRSALLFVLLSAPLFVSLSAPLFVLRSALLFVL 748
+S LL +S + L F
Sbjct: 125 RKSLLLVQSISPGWLAAFIVALAAANWLGGFAY 157
>gnl|CDD|217681 pfam03706, UPF0104, Uncharacterized protein family (UPF0104). This
family of proteins are integral membrane proteins. These
proteins are uncharacterized but contain a conserved PG
motif. Some members of this family are annotated as
dolichol-P-glucose synthetase and contain a pfam00535
domain.
Length = 292
Score = 39.6 bits (93), Expect = 0.006
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 9/178 (5%)
Query: 164 SVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 222
+V++ LL + L A L + L ALL + SL +LL L + L+ L +LL L
Sbjct: 103 AVVIERLLLLGLLALLLLALLALLLLLSLPLIGLLLLLLLGVLLLALVLLLLLLLRLLRK 162
Query: 223 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 282
L + L L L L L LLS L+++ + L +LL AL
Sbjct: 163 RRRLLRLERLPERLRRLLESLRESLRLLRSPKRLLLLLFLLSLLIWLLEALALYLLLRAL 222
Query: 283 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL-----LFVSLSAPLSVLLSALLFVSL 335
L PL V+L +L+ + + L V L A V +A L +L
Sbjct: 223 ---GLDVPLLVVLLIFALATLAGLIPITPGGLGVREAALVLLLALFGVPAAAALAAAL 277
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 438
Score = 39.8 bits (94), Expect = 0.006
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 651 VLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLS 710
VL L F LL APL LLSA + LL LL SP + L + + F LL
Sbjct: 83 VLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPE--VQALEVEYFRIRILGAPFSLLG 140
Query: 711 APLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTL 770
LR+ F + V+ + L+ V++N I L Y L
Sbjct: 141 ---AALRA----------FFSGIGRTRVVMVANLVMVVVN------------IV-LDYAL 174
Query: 771 IY 772
I+
Sbjct: 175 IF 176
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional.
Length = 1094
Score = 39.9 bits (94), Expect = 0.008
Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 22/199 (11%)
Query: 627 VLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPS 686
L + P L A + L+A L + A +VLL+ + L +++L + + +
Sbjct: 48 YLFNFPDTSLAWAFVLALLAAALRRRKRAAWWVLLAYLVLAALLN-VALLALGVNTAAET 106
Query: 687 APLFVLLSAPLFVLLSALLFVLLSAPLF---VLRSALL--FVLLSAPLFVSLSAPLFVLR 741
L V + A++ ++L+ F V R AL +L L V ++
Sbjct: 107 FGENSLSIIGFAVHVVAIVLLVLARREFPARVRRGALRKALAVLVGGLAVG-----ILVG 161
Query: 742 SALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNML 801
L+ + L + L + + + P + L+ L
Sbjct: 162 WGLVELFPGSLAPPER--------LGWALNRVVGFALADPDLFTGHPPVWVNALLG---L 210
Query: 802 MCALNLYIAIELLVASTRL 820
A L A+ +L S R
Sbjct: 211 FGAAALIAALIVLFRSQRA 229
Score = 36.1 bits (84), Expect = 0.13
Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%)
Query: 157 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLL 215
+ P + L A + L+A L A +V L+ L+ LL+ L +
Sbjct: 48 YLFNFPDTSLAWAFVLALLAAALRRRKRAAWWVLLAYLVLAALLNVALLALGVNTAAETF 107
Query: 216 SALLFVSLSAPLSVLLSALLFVSLSA------PLSVLLSALLFVSLSAPLSVLLSALLFV 269
+ + V+ LL ++ ++ + + V A ++ L+ +
Sbjct: 108 GENSLSIIGFAVHVVAIVLLVLARREFPARVRRGALRKALAVLVGGLAVGILVGWGLVEL 167
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP--LSVLLSALLFVSLSAPLSVLL 327
P S+ L +L+ + L+ + P ++ LL +L A L VL
Sbjct: 168 F---PGSLAPPERLGWALNRVVGFALADPDLFTGHPPVWVNALLGLFGAAALIAALIVLF 224
Score = 33.8 bits (78), Expect = 0.62
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 662 SAPLFVLLSAPLSVLLS---ALLFVSPSAPLFV---LLSAPLFVLLSALLFVLLSAPLFV 715
+A V + A LS+L S L ++ FV L + P L A + LL+A L
Sbjct: 13 AAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPDTSLAWAFVLALLAAALRR 72
Query: 716 LRSALLFVLLSAPLFVSLSAPLFVL 740
+ A +VLL+ + +L +
Sbjct: 73 RKRAAWWVLLAYLVLAALLNVALLA 97
Score = 32.2 bits (74), Expect = 1.9
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
A + L+A L A +V L+ L+ LL+ L + +
Sbjct: 59 WAFVLALLAAALRRRKRAAWWVLLAYLVLAALLNVALLALGVNTAAETFGENSLSIIGFA 118
Query: 211 LSVLLSALLFVSLSA------PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 264
+ V+ LL ++ ++ + + V A ++ L+ + P S+
Sbjct: 119 VHVVAIVLLVLARREFPARVRRGALRKALAVLVGGLAVGILVGWGLVELF---PGSLAPP 175
Query: 265 ALLFVSLSAPLSVLLSALLFVSLSAP--LSVLLSALLFVSLSAPLSVLL 311
L +L+ + L+ + P ++ LL +L A L VL
Sbjct: 176 ERLGWALNRVVGFALADPDLFTGHPPVWVNALLGLFGAAALIAALIVLF 224
>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease
[General function prediction only].
Length = 226
Score = 38.4 bits (89), Expect = 0.013
Identities = 52/176 (29%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 166 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 225
LL LL + L +LL LL + L L LL+ LL L L++ +
Sbjct: 11 LLLILLLILLLFLWLLLLFLLLLLPLLLLLGGLLALLLV--LLLLALFLIALAFLLGFLK 68
Query: 226 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 285
L +L L L L +LL LLF + LSV L L + L V
Sbjct: 69 LLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLNQLPLLLTLAVLWLLLFFLV 128
Query: 286 SL-SAPLS-------VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 333
L APL+ LL AL L++++S+LLF L P +LL L
Sbjct: 129 LLILAPLAEELLFRGYLLGAL-ARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLY 183
Score = 37.6 bits (87), Expect = 0.021
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 11/173 (6%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
LL + L +LL LL + L L LL+ LL L L++ + L
Sbjct: 14 ILLLILLLFLWLLLLFLLLLLPLLLLLGGLLALLLV--LLLLALFLIALAFLLGFLKLLG 71
Query: 213 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL- 271
+L L L L +LL LLF + LSV L L + L V L
Sbjct: 72 LLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLNQLPLLLTLAVLWLLLFFLVLLI 131
Query: 272 SAPLS-------VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 317
APL+ LL AL L++++S+LLF L P +LL L
Sbjct: 132 LAPLAEELLFRGYLLGAL-ARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLY 183
Score = 35.7 bits (82), Expect = 0.096
Identities = 49/173 (28%), Positives = 67/173 (38%), Gaps = 11/173 (6%)
Query: 182 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 241
LL LL + L +LL LL + L L LL+ LL L L++ +
Sbjct: 11 LLLILLLILLLFLWLLLLFLLLLLPLLLLLGGLLALLLV--LLLLALFLIALAFLLGFLK 68
Query: 242 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 301
L +L L L L +LL LLF + LSV L L + L V
Sbjct: 69 LLGLLRKGGLAWILLLLLGLLLIPLLFSLFLSLLSVGLLLNQLPLLLTLAVLWLLLFFLV 128
Query: 302 SL-SAPLS-------VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPICL 346
L APL+ LL AL L++++S+LLF L P +
Sbjct: 129 LLILAPLAEELLFRGYLLGAL-ARRFGPLLAIIISSLLFALLHLPNGLLLLYF 180
Score = 33.0 bits (75), Expect = 0.56
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
L L A L VLL LF++ A L L + + L ++LL +L+ S+ L
Sbjct: 40 LGGLLALLLVLLLLALFLIALAFLLGFLKLLGLLRKGGLAWILLLLLGLLLIPLLFSLFL 99
Query: 678 SALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLF----------------------V 715
S L L +LL+ + LL L +L+ APL +
Sbjct: 100 SLLSVGLLLNQLPLLLTLAVLWLLLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAI 159
Query: 716 LRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRG 755
+ S+LLF LL P + L L + L+ LL RT
Sbjct: 160 IISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGS 199
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 39.3 bits (92), Expect = 0.013
Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 24/198 (12%)
Query: 141 TPVCLTECTPVSALLFVSL---SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA---P 194
T + L E V A+L L PL L L SA + LL +L V L+ P
Sbjct: 75 TTINLVEAV-VGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDP 133
Query: 195 LSVLLSALLFVSLSA----PLSVLLS-ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 249
L L +L ++ PL +L L + L L ++L+ LS
Sbjct: 134 LRAFLIWVLSEAIGMLALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLT------LSW 187
Query: 250 LLFVSLSAPLSVLLSALLFVSLSAP----LSVLLSALLFVSL--SAPLSVLLSALLFVSL 303
L + L P + ++ L++ ++ P + L+ ++ VSL +A S+L + ++
Sbjct: 188 LALLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMS 247
Query: 304 SAPLSVLLSALLFVSLSA 321
P L LL ++
Sbjct: 248 HMPWLPFLLILLPANIMT 265
Score = 32.7 bits (75), Expect = 1.4
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 22/176 (12%)
Query: 175 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 234
+S L + L + LS L+ L F P ++++ A + +
Sbjct: 1 VSLGLVSFIFTLFSLELSR-FPTTLAPLWF-----PTAIMMVAFY----RHAGR-MWPGI 49
Query: 235 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 294
L ++ + LLF + S L+ L+ + A VLL LL PL L
Sbjct: 50 LLSCSLG--NIAANILLFSTSSLNLTWTTINLVEAVVGA---VLLRKLL--PWYNPLQNL 102
Query: 295 LSALLFVSLSAPLSVLLSALLFVSLSA---PLSVLLSALLFVSLSAPLSCTPICLT 347
L SA + LL +L V L+ PL L +L ++ L+ P+ L
Sbjct: 103 ADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWVLSEAIGM-LALVPLGLL 157
>gnl|CDD|222703 pfam14351, DUF4401, Domain of unknown function (DUF4401). This
family of proteins is found in bacteria. Proteins in
this family are typically between 357 and 735 amino
acids in length. The family is found in association with
pfam09925. There is a single completely conserved
residue K that may be functionally important.
Length = 321
Score = 38.0 bits (89), Expect = 0.020
Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 10/173 (5%)
Query: 148 CTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 207
+ ALL+ + L LSA V L L L PL+ LL LFV L
Sbjct: 93 LALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVFL 152
Query: 208 SAPLSVLLSALLFVSLSA-----PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 262
L + L LS+L L+ S L ++ L +L
Sbjct: 153 LLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAPFFLASWLKALLLLLLL 212
Query: 263 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
+ L + +S+L ++ VLL+ LL LS P L +ALL
Sbjct: 213 VGLALLL-----ISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGLGAALL 260
Score = 36.1 bits (84), Expect = 0.098
Identities = 50/167 (29%), Positives = 64/167 (38%), Gaps = 16/167 (9%)
Query: 181 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 240
L+ ALL+ + L LSA V L L L PL+ LL LFV L
Sbjct: 94 ALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVFLL 153
Query: 241 APLSVLLSALLFVSLSA-----PLSVLLSALL--FVSLSAPLSVLLSALLFVSLSAPLSV 293
L + L LS+L L+ SL L++ L L L V
Sbjct: 154 LNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAPFFLASWLKALLLLLLLV 213
Query: 294 LLSALLF-------VSLSAPL--SVLLSALLFVSLSAPLSVLLSALL 331
L+ LL L++ L VLL+ LL LS P L +ALL
Sbjct: 214 GLALLLISILWRRRQPLTSKLQAVVLLALLLLALLSLPAPGLGAALL 260
Score = 33.4 bits (77), Expect = 0.64
Identities = 44/157 (28%), Positives = 54/157 (34%), Gaps = 1/157 (0%)
Query: 179 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 238
L+ L + SVL + LL + A L L+ L LSA VL L
Sbjct: 68 LAGQLLLAFGLFDLLDESVLAALLLLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAE 127
Query: 239 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 298
L L L L L V L L + LL L + L L LL L
Sbjct: 128 LLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAY-GLLLSLLALLLVL 186
Query: 299 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 335
SL L++ L L L V L+ LL L
Sbjct: 187 SGNSLILGAPFFLASWLKALLLLLLLVGLALLLISIL 223
Score = 32.2 bits (74), Expect = 1.3
Identities = 39/135 (28%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
L LSA VL L L L PL L LFV L L + LL
Sbjct: 109 LRFLSAAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALL 168
Query: 678 SALLFVSPSAPLFVLLSAPL---FVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLS 734
L + L LL+ L L L++ L L LL V L+ L L
Sbjct: 169 EPLAY----GLLLSLLALLLVLSGNSLILGAPFFLASWLKALLLLLLLVGLALLLISILW 224
Query: 735 APLFVLRSALLFVLL 749
L S L V+L
Sbjct: 225 RRRQPLTSKLQAVVL 239
Score = 31.4 bits (72), Expect = 2.4
Identities = 38/135 (28%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVS 684
L L+ A L+ L+ L LSA VL L L L PL+ LL LFV
Sbjct: 92 LLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVF 151
Query: 685 PSAPLFVLLSAPLFVLLS----ALLFVLLSAPL---FVLRSALLFVLLSAPLFVSLSAPL 737
L + LL LL LL+ L L++ L L L
Sbjct: 152 LLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAPFFLASWLKALLLLLL 211
Query: 738 FVLRSALLFVLLNER 752
V + LL +L R
Sbjct: 212 LVGLALLLISILWRR 226
Score = 30.7 bits (70), Expect = 3.7
Identities = 38/131 (29%), Positives = 46/131 (35%), Gaps = 1/131 (0%)
Query: 649 LFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVL 708
L L ALL+ L+ L LSA VL L L PL LL LFV
Sbjct: 92 LLALILALLYFLMPDRLLRFLSAAAGVLALLGLLAELLLSGLAYLLLPLAPLLLVALFVF 151
Query: 709 LSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAY 768
L L + R LL PL L L L L L +L L
Sbjct: 152 LLLNLILGRLRRRHALLE-PLAYGLLLSLLALLLVLSGNSLILGAPFFLASWLKALLLLL 210
Query: 769 TLIYLSIVTIG 779
L+ L+++ I
Sbjct: 211 LLVGLALLLIS 221
Score = 30.3 bits (69), Expect = 5.7
Identities = 36/135 (26%), Positives = 46/135 (34%), Gaps = 8/135 (5%)
Query: 641 LFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVL 700
L + A L+ L L LSA VL L A L +S A L + L+ L V
Sbjct: 92 LLALILALLYFLMPDRLLRFLSAAAGVLALL----GLLAELLLSGLAYLLLPLAPLLLVA 147
Query: 701 LSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPL----FVLRSALLFVLLNERTRGW 756
L L + L R ALL L L L+ L L F L +
Sbjct: 148 LFVFLLLNLILGRLRRRHALLEPLAYGLLLSLLALLLVLSGNSLILGAPFFLASWLKALL 207
Query: 757 LMVDSPIPTLAYTLI 771
L++ L I
Sbjct: 208 LLLLLVGLALLLISI 222
Score = 30.3 bits (69), Expect = 5.7
Identities = 46/143 (32%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 610 LTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLL 669
L E L L PL LL LFV L L + L L + LL L +L
Sbjct: 125 LAELLLSGLAYLLLPLAPLLLVALFVFLLLNLILGRLRRRHALLEPLAYGLL---LSLLA 181
Query: 670 SAPLSVLLSALLFVSP--SAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSAL-LFVLLS 726
+ S +L ++ L LL L V L+ LL +L L S L VLL+
Sbjct: 182 LLLVLSGNSLILGAPFFLASWLKALLLLLLLVGLALLLISILWRRRQPLTSKLQAVVLLA 241
Query: 727 APLFVSLSAPLFVLRSALLFVLL 749
L LS P L +ALL +LL
Sbjct: 242 LLLLALLSLPAPGLGAALLLLLL 264
>gnl|CDD|216801 pfam01943, Polysacc_synt, Polysaccharide biosynthesis protein.
Members of this family are integral membrane proteins.
Many members of the family are implicated in production
of polysaccharide. The family includes RfbX part of the
O antigen biosynthesis operon. The family includes SpoVB
from Bacillus subtilis, which is involved in spore
cortex biosynthesis.
Length = 272
Score = 37.6 bits (88), Expect = 0.020
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 16/190 (8%)
Query: 164 SVLLSALLFVSLSAPLSVLLSALLFVSLSAP-LSVLLSALLFVSLSAPLSVLLSALLF-- 220
S +S +L L L LL L+ L P L+V+L L L P + LF
Sbjct: 74 SKYISNVLLGKLLLSLIFLLILLIAAFLGLPDLAVILLILALAILLLPGVSQFFSWLFQG 133
Query: 221 ------VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 274
+++S + L S +L LL+A+L + +++ + +++ + P
Sbjct: 134 LEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLP 193
Query: 275 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALL------FVSLSAPLSVLL 327
V S LF L L + L +SL + +V+L +L S + L V+L
Sbjct: 194 RFVFFSLKLFKELLRFSWPLFLSSLAISLYTYIDTVMLGLMLGAYAVGIYSAAYKLLVIL 253
Query: 328 SALLFVSLSA 337
+L+ ++
Sbjct: 254 LSLIASIVTV 263
Score = 35.7 bits (83), Expect = 0.096
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAP-LSVLLSALLFVSLSAPLSVLLSALLF----- 204
+S +L L L LL L+ L P L+V+L L L P + LF
Sbjct: 77 ISNVLLGKLLLSLIFLLILLIAAFLGLPDLAVILLILALAILLLPGVSQFFSWLFQGLEK 136
Query: 205 ---VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 261
+++S + L S +L LL+A+L + +++ + +++ + P V
Sbjct: 137 MKYIAISMIIEKLGSLILVFIAVFLGLDLLAAVLILLIASLIGGIIALAVLRKKFLPRFV 196
Query: 262 LLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALL------FVSLSAPLSVLLSAL 314
S LF L L + L +SL + +V+L +L S + L V+L +L
Sbjct: 197 FFSLKLFKELLRFSWPLFLSSLAISLYTYIDTVMLGLMLGAYAVGIYSAAYKLLVILLSL 256
Query: 315 LFVSLSA 321
+ ++
Sbjct: 257 IASIVTV 263
>gnl|CDD|220527 pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268). This
domain, found in various hypothetical bacterial proteins,
as well as predicted zinc dependent proteases, has no
known function.
Length = 195
Score = 37.3 bits (87), Expect = 0.021
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 911 FFFIL----RKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVN-----SFIHV 961
F F+L K + H YHH +K T L +++ F+
Sbjct: 52 FLFLLPNDYDKNELAALLAHEYHHVC----RLSYLKKDEKDVTLLDSIIMEGLAEHFV-- 105
Query: 962 LMYSYYALAALGPHIAKYL------WWKKYL---TILQLIQFTTALILGVNGIKSGCDFP 1012
Y LGP Y WK+ + L+ + G + I P
Sbjct: 106 --AELYGEEYLGPWTTPYDEEQLEHLWKQVIKPNLDLKGFSEHDPYLYG-DDIG---RLP 159
Query: 1013 LWMQYLLVFYMIT 1025
W Y + +Y++
Sbjct: 160 KWAGYAVGYYIVK 172
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 37.3 bits (87), Expect = 0.029
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 221
P + LL L + L L+ L+ L+ + L+ L V+L+ + L L LL LL +
Sbjct: 18 PRTKLLLLFLLIILVFLLNDLVLLLIILLLTL-LLVVLAKIPLKFLLLLLGFLLLGLLLI 76
Query: 222 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 281
+ + S+ + LF + L+ LL ++L A L ++L+ P L SA
Sbjct: 77 AFTNGFSLGPAVGLFGLGPVTIGSLVLGLLIALRVL---LILLAALLLTLTTPPLELTSA 133
Query: 282 L--LFVSLSAPLSVLLSALLFVSL 303
L L V L +L AL F+ L
Sbjct: 134 LERLLVPLVELALLLSLALRFIPL 157
Score = 35.0 bits (81), Expect = 0.15
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
P + LL L + L L+ L+ L+ + L+ L V+L+ + L L LL LL +
Sbjct: 18 PRTKLLLLFLLIILVFLLNDLVLLLIILLLTL-LLVVLAKIPLKFLLLLLGFLLLGLLLI 76
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
+ + S+ + LF + L+ LL ++L A L ++L+ P L SA
Sbjct: 77 AFTNGFSLGPAVGLFGLGPVTIGSLVLGLLIALRVL---LILLAALLLTLTTPPLELTSA 133
Query: 330 L 330
L
Sbjct: 134 L 134
>gnl|CDD|223469 COG0392, COG0392, Predicted integral membrane protein [Function
unknown].
Length = 322
Score = 37.4 bits (87), Expect = 0.038
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS---ALLFVSLSAPLSVLLSALLFVSL 207
V L+ L ++++ L F+ L+ L +LL LLFV L L +LL LL L
Sbjct: 113 VRYRLYSRLGLSVALVSRILAFLLLTFGLGLLLLFLLILLFVPLKLALFLLLLTLLLRIL 172
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSAL 266
L + + LL ++ L + L +L LL V A +L L
Sbjct: 173 LILLLLAAAILLILTAFLRRREFKIGRLRLRLPNRRGLLAQLLLSLVEWLADALILYLLL 232
Query: 267 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL---------LFVSLSAPLSVLLSALL-- 315
L + ++ ++L A L L+ +S L L +L P S L+ALL
Sbjct: 233 LALGVNVSFFLVLLAFLVAVLAGVISPTPGGLGVVEAVFIALLSALGIPASTALAALLLW 292
Query: 316 -FVSLSAPLSVLLSALLFVSLSA 337
+S PL + +LL++
Sbjct: 293 RLISYYLPLLLGGISLLYLERKK 315
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 37.6 bits (88), Expect = 0.042
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 35/188 (18%)
Query: 639 APLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLL----S 694
++V L L ++ L F L L L LL L +S P L+
Sbjct: 279 PNIYVGLLPLLLLI---LYFFNKLIKLKEKL---LFALLLLFLILSFYLPPLDLVWHGFQ 332
Query: 695 AP---------LFVLLSALLF--VLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSA 743
AP LF L LL LL L+ +LL LF
Sbjct: 333 APVWFPYRFSFLFSFLILLLAAEALLHLKQLKKLKILISILLLVLLF------------I 380
Query: 744 LLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNMLMC 803
L+F+L + +L + + TL + L+YL ++ + + +K + +LV L
Sbjct: 381 LVFLLNLSKHYSFLTQTNLLLTLLFLLLYLLLLLLFLKKQIRKKLVIILLLLVVVLEL-- 438
Query: 804 ALNLYIAI 811
LN Y+++
Sbjct: 439 GLNAYLSL 446
Score = 31.8 bits (73), Expect = 2.7
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLS---APLFVLRSALLFVLLSAPLFVLLSAP 672
I LLS +SA VLL P + L + L F P
Sbjct: 217 IISSLLS----GGISA--VVLL--PTVLGLLNNKRAYTEVSILLTF----------DINP 258
Query: 673 LSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLL--SAPLFVLRSALLFVLLSAPLF 730
L LL+ LL S + L ++V L LL ++L L L+ LLF LL L
Sbjct: 259 LD-LLAKLLIGSFNFTQMGGL-PNIYVGLLPLLLLILYFFNKLIKLKEKLLFALLLLFLI 316
Query: 731 VSLSAPLFVL 740
+S P L
Sbjct: 317 LSFYLPPLDL 326
>gnl|CDD|224748 COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].
Length = 386
Score = 37.1 bits (86), Expect = 0.047
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 7/169 (4%)
Query: 615 PICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSA--P 672
P LV+L LL A L SA L+ L+A ++ S LL L F P
Sbjct: 92 PALLVVLLL-TAALLLALLPPGASAALWADLAALFYL--SNLLLTLAVGAYFAASGLLSP 148
Query: 673 LSVL--LSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLF 730
L L LS PL +LL + L+ LL +L A F+L + F +A +
Sbjct: 149 LLHLWSLSVEEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYY 208
Query: 731 VSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIG 779
+ + L AL + +R ++ + + L L+ L++ I
Sbjct: 209 GTATRLWEFLLGALAALWRPKRRPWPALLAAALALLGLALLLLAVALIP 257
Score = 36.3 bits (84), Expect = 0.074
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 16/196 (8%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 211
S L PL +LL + +L+ L +L A F+ L+ +AL + + +
Sbjct: 156 SVEEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLW 215
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
LL AL + ++L L++LL A+ + S+P L+
Sbjct: 216 EFLLGALAALWRPKRRPWPALLAAALALLG-LALLLLAVALIPGSSPFFPGDLLLVPSLG 274
Query: 272 SAPL--SVLLSALLFVSLSAPLSVLLSAL-------------LFVSLSAPLSVLLSALLF 316
+A L +V LS+ V L + + L + +SALL
Sbjct: 275 AALLVLAVAALVGGSRLLSSRPLVFLGDISYSLYLWHWPVLVFLLYLVGLSGLPISALLL 334
Query: 317 VSLSAPLSVLLSALLF 332
+ + LS+LL+AL +
Sbjct: 335 ILAALALSILLAALSY 350
Score = 34.8 bits (80), Expect = 0.23
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV----------SLSAPL 211
P +++ L L A L SA L+ L+A LS LL L +PL
Sbjct: 92 PALLVVLLLTAALLLALLPPGASAALWADLAALF--YLSNLLLTLAVGAYFAASGLLSPL 149
Query: 212 SVL--LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
L LS L PL +LL + +L+ L +L A F+ L+ +AL +
Sbjct: 150 LHLWSLSVEEQFYLLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYG 209
Query: 270 SLSAPLSVLLSALLFV------SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 323
+ + LL AL + A L+ L+ L L ++++ + F L
Sbjct: 210 TATRLWEFLLGALAALWRPKRRPWPALLAAALALLGLALLLLAVALIPGSSPFFPGDLLL 269
Query: 324 SVLLSALLFVSLSAPLS 340
L A L V A L
Sbjct: 270 VPSLGAALLVLAVAALV 286
Score = 33.2 bits (76), Expect = 0.72
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 9/184 (4%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSALLFVS 206
P A + LS LL L +PL L LS
Sbjct: 109 LPPGASAALWADLAALFYLSNLLLTLAVGAYFAASGLL------SPLLHLWSLSVEEQFY 162
Query: 207 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 266
L PL +LL + +L+ L +L A F+ L+ +AL + + + LL AL
Sbjct: 163 LLFPLLLLLLRRVRFALALLLLLLALASFFLLLALGPFATGAALYYGTATRLWEFLLGAL 222
Query: 267 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 326
+ ++L L++LL A+ + S+P L+ +A L +
Sbjct: 223 AALWRPKRRPWPALLAAALALLG-LALLLLAVALIPGSSPFFPGDLLLVPSLGAALLVLA 281
Query: 327 LSAL 330
++AL
Sbjct: 282 VAAL 285
Score = 30.5 bits (69), Expect = 4.5
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 8/171 (4%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
A L+ P LL+A L + L++LL A+ + S+P L+ +A
Sbjct: 221 ALAALWRPKRRPWPALLAAALAL---LGLALLLLAVALIPGSSPFFPGDLLLVPSLGAAL 277
Query: 211 L--SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 268
L +V LS+ V L + + SL +L LL++ + L + L+
Sbjct: 278 LVLAVAALVGGSRLLSSRPLVFLGDISY-SLYLWHWPVLVFLLYLVGLSGLPISALLLIL 336
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 319
+L LS+LL+AL + + PL L ++ + A L+ + +L
Sbjct: 337 AAL--ALSILLAALSYRFVEKPLRRLGRRRVWSRIRAVLAAGRARAAAGTL 385
>gnl|CDD|225978 COG3447, COG3447, Predicted integral membrane sensor domain [Signal
transduction mechanisms].
Length = 308
Score = 36.6 bits (85), Expect = 0.054
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 12/200 (6%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
++ L A + +L L PL L L F+ A + LL A++ L
Sbjct: 91 MAITTINILEAVVGAVLLRKLLPW-YNPLQNLQDWLRFLLGGAIVPPLLGAIIGSVLLVV 149
Query: 211 LSVLL-----SALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVS-LSAPLSVLL 263
L + + A + L + + + L L V L +++LL
Sbjct: 150 LGTPGDDFSEAWFTWWLGDAIGILALAPLGIVIRPNWLRRHRLLRLQLVEALVLAITLLL 209
Query: 264 SALLFVSLSAPLS-VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 322
S LL + L P + ++L LL+ ++ P + A L L A ++L +A +
Sbjct: 210 SWLLSLYLPLPFAYLILPPLLWAAVRFP---VFGASLIFCLLALFAILATAQGKSLFATD 266
Query: 323 LSVLLSALLFVSLSAPLSCT 342
+ S LL++ ++ L
Sbjct: 267 STDQSSILLWLPMALILLPA 286
Score = 36.2 bits (84), Expect = 0.070
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 15/208 (7%)
Query: 151 VSALLFVSLSAPLSVLLSALL--FVSLSAPLSVLLSALLFVSL-SAPLSVLLSALLFVSL 207
VS L L S+ LS L P S+++ A + P L +L ++
Sbjct: 20 VSLGLVSFLFTLFSLELSQFGTQLAPLWFPTSIMMGAFYRHAGRMWPGIALSCSLGNIAA 79
Query: 208 SAPL----SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 263
S L S+ ++ L A + +L L PL L L F+ A + LL
Sbjct: 80 SILLFSTSSLNMAITTINILEAVVGAVLLRKLLPW-YNPLQNLQDWLRFLLGGAIVPPLL 138
Query: 264 SALLFVSLSAPLSVLL-----SALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFV 317
A++ L L + + A + L + + + L L V
Sbjct: 139 GAIIGSVLLVVLGTPGDDFSEAWFTWWLGDAIGILALAPLGIVIRPNWLRRHRLLRLQLV 198
Query: 318 S-LSAPLSVLLSALLFVSLSAPLSCTPI 344
L +++LLS LL + L P + +
Sbjct: 199 EALVLAITLLLSWLLSLYLPLPFAYLIL 226
>gnl|CDD|223866 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 36.9 bits (86), Expect = 0.056
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
L A L VLL+ L + L L + LL +LLS P + L PL++L+
Sbjct: 13 LKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPTLLPLVLPLALLI 72
Query: 678 SALLFVS 684
+ALL +
Sbjct: 73 AALLTLG 79
Score = 31.5 bits (72), Expect = 2.3
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 183 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL-----SALLFVSLSAPLSVLLSALLFV 237
L + A L VLL+ LL + L L+ AL + L +LLS +
Sbjct: 8 LLREYLKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLL-----LLLSLPTLL 62
Query: 238 SLSAPLSVLLSALL-FVSLSA--PLSVLLSA---LLFVSLSA-PLSVLLSALLFV 285
L PL++L++ALL LS L VL ++ L + L++LLS L FV
Sbjct: 63 PLVLPLALLIAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALLLSLLSFV 117
Score = 31.5 bits (72), Expect = 2.3
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 215 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL-----SALLFVSLSAPLSVLLSALLFV 269
L + A L VLL+ LL + L L+ AL + L +LLS +
Sbjct: 8 LLREYLKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLL-----LLLSLPTLL 62
Query: 270 SLSAPLSVLLSALL-FVSLSA--PLSVLLSA---LLFVSLSA-PLSVLLSALLFV 317
L PL++L++ALL LS L VL ++ L + L++LLS L FV
Sbjct: 63 PLVLPLALLIAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALLLSLLSFV 117
Score = 31.5 bits (72), Expect = 2.5
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL----LSALLFVSLSAP 210
L +L LL + L L LL+ L VL LS + L P
Sbjct: 8 LLREYLKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPTLLPLVLP 67
Query: 211 LSVLLSALL-FVSLSA--PLSVLLSA---LLFVSLSA-PLSVLLSALLFV 253
L++L++ALL LS L VL ++ L + L++LLS L FV
Sbjct: 68 LALLIAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALLLSLLSFV 117
Score = 31.2 bits (71), Expect = 3.0
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 689 LFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLF 746
L VLL+ L + L LL + LL +LLS P + L PL +L +ALL
Sbjct: 20 LLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPTLLPLVLPLALLIAALLT 77
Score = 30.8 bits (70), Expect = 3.7
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 641 LFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVL 700
+ A L VL + LL + L L L LL + S P + L PL +L
Sbjct: 12 YLKTFLAILLVLLAILLIIDLLELLNGKAVDGRYPALDVLLLLLLSLPTLLPLVLPLALL 71
Query: 701 LSALLF-----------VLLSA---PLFVLRSALLFVLL 725
++ALL VL ++ +LR L+ LL
Sbjct: 72 IAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALL 110
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 36.4 bits (84), Expect = 0.061
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 5/199 (2%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+S + L L A L A L +L LL P LL ++L
Sbjct: 21 LSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLAL--- 77
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 270
L + L LL S +++L+ L + LL+ LL + L +L LL +
Sbjct: 78 LGLALPFLLLFLALKYTSASVASLII-GLLPLFTALLAVLLLLGERLSLLQILGILLAL- 135
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L +L + L + L+A L +L L LS L V+L+ L +LL+ L
Sbjct: 136 AGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALL 195
Query: 331 LFVSLSAPLSCTPICLTEC 349
L + PI
Sbjct: 196 LLLLFFLSGFGAPILSRAW 214
Score = 33.7 bits (77), Expect = 0.48
Identities = 41/187 (21%), Positives = 64/187 (34%), Gaps = 1/187 (0%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
+ LF + L L L + L + L L L L + L+
Sbjct: 31 ESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLA 90
Query: 209 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 268
+ A L + L + LL+ LL + L +L LL + L +L
Sbjct: 91 LKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLAL-AGVLLILLGGGGGG 149
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 328
+ L + L+A L +L L LS L V+L+ L +LL+ LL +
Sbjct: 150 ILSLLGLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPI 209
Query: 329 ALLFVSL 335
L
Sbjct: 210 LSRAWLL 216
Score = 31.4 bits (71), Expect = 2.3
Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 18/197 (9%)
Query: 624 PLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFV 683
P + + L + L P + + ++LL + L+ P +L AL +
Sbjct: 35 PFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT 94
Query: 684 SPSAPLFVLLSAPLFVLLSALLFVL-------LSAPLFVLRSALLFVLLSAPLFVSLSAP 736
S S ++ PLF L A+L +L + + + +L +LL LS
Sbjct: 95 SASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLL 154
Query: 737 --LFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSI 794
L L +ALL+ L + + L L+ ++ + + L+
Sbjct: 155 GLLLALAAALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLL---------LFFLSGF 205
Query: 795 LVPYNMLMCALNLYIAI 811
P L LY+ +
Sbjct: 206 GAPILSRAWLLLLYLGV 222
>gnl|CDD|225669 COG3127, COG3127, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, permease component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 829
Score = 37.0 bits (86), Expect = 0.067
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 23/207 (11%)
Query: 149 TPVSALLFVSLSAP---------LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV-L 198
A+L L A L +L+ LL +++ L L +L L++ L V L
Sbjct: 284 YDAIAIL-KCLGASRGQLRLLYLLQILMVLLLGIAIGLVLGALAPLVLMALLASLLPVPL 342
Query: 199 LSALLFVSLSAPLSVLLSALLF--VSLSAPLSVLLSALL---FVSLSAPLSVLL-SALLF 252
+ L+ A ++ L AL F + L V A+L + PL L A L
Sbjct: 343 PAGGLWPWALALAALFLIALAFALLPLGRLRRVPPLAVLRQGVEAGVWPLLTYLAGAALL 402
Query: 253 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA---LLFVSLSAPLSV 309
+ A L+VL++ + +V+L+ L+ ++ L ++L L
Sbjct: 403 LVALAALAVLMAGDRLLWAILAGAVVLAFLVLRLVAGGGLWAALRSLRLTSLALRLALGN 462
Query: 310 LL---SALLFVSLSAPLSVLLSALLFV 333
LL +A L+ L ++L ALL +
Sbjct: 463 LLRPGAATPSQVLALGLGLMLLALLAL 489
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 36.6 bits (85), Expect = 0.067
Identities = 52/245 (21%), Positives = 85/245 (34%), Gaps = 24/245 (9%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFV- 683
LF + F +L L L+ ++ L L +LL L +L S P+ ++S LL +
Sbjct: 13 LFFPIFLG-FGILLVFLLWLLTLLIYFLGFVLPILLLFQGLRLLFSLPILFIVSLLLLLL 71
Query: 684 -------SPSAPLFV-LLSAPLF---VLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
L + LL + L +L L+ P +L L
Sbjct: 72 LFKGVDALNIFRLILALLISILLILDILFYRFFIDFLTIPNALLIEDFNLGKLGFSALSL 131
Query: 733 LSAP--LFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRL---MRDRK 787
L LFV+ LL +LL R + IP L+ ++ + +L
Sbjct: 132 LYPEDILFVVDLILLILLLVFYWRLAGLTSKLIPLFVRLLVLALLLYLFLQLLFLGEILD 191
Query: 788 PYKLTSILVPYNMLMCALNL-----YIAIELLVASTRLKYSYVCQPVTYVNTQEELRLLV 842
P L + + L L Y L AS + + V +T V + L
Sbjct: 192 PALLAAAFDR-LYIAPYLGLDNFLIYDGNAFLYASKQRALAAVKGLLTDVANYIKASLTA 250
Query: 843 ASTRL 847
+++L
Sbjct: 251 PNSKL 255
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.
Length = 505
Score = 36.4 bits (85), Expect = 0.081
Identities = 41/162 (25%), Positives = 54/162 (33%), Gaps = 30/162 (18%)
Query: 628 LLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLL---SAPLSVLLSALLF-- 682
LL LL A L +L F LLS + L ++P L L+
Sbjct: 1 LLLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGF 60
Query: 683 -----------VSPS--APLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPL 729
VS + L+ L +LL+A L L+ AL L
Sbjct: 61 GYFGSGLSWIYVSIHTFGGMPAWLAPLLVLLLAAYL------ALY---PALFAALWR--R 109
Query: 730 FVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLI 771
S L L+VL E RGWL+ P L Y+ I
Sbjct: 110 LWPKSGLRRALALPALWVLT-EWLRGWLLTGFPWLALGYSQI 150
Score = 29.8 bits (68), Expect = 9.1
Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 25/203 (12%)
Query: 159 LSAPLSVLLSALLFVSLSA---------PLSVLLSALLFVSL--SAPLSVLLSALL--FV 205
L LL ALL +L PL++L A L L ++P L L F
Sbjct: 2 LLRGWLRLLLALLAGALGTLAFAPFDLWPLALLSLAGLLWLLLGASPKQAALIGFLWGFG 61
Query: 206 SLSAPLS-VLLSALLFVSLSAPLSVLLSALL--FVSLSAPLSVLLSALLFVSLSAPLSVL 262
+ LS + +S F + A L+ LL LL +++L L L L+ S L
Sbjct: 62 YFGSGLSWIYVSIHTFGGMPAWLAPLLVLLLAAYLALYPALFAALWRRLW-PKSGLRRAL 120
Query: 263 LSALLFVSLSAPLSVLLSA---LLF---VSLSAPLSVL--LSALLFVSLSAPLSVLLSAL 314
L+V LL+ L PL+ L + + +S L L AL
Sbjct: 121 ALPALWVLTEWLRGWLLTGFPWLALGYSQIPDGPLAQLAPIFGVYGLSFLVVLVNALLAL 180
Query: 315 LFVSLSAPLSVLLSALLFVSLSA 337
+ L++L LL ++
Sbjct: 181 ALIKRRWRLALLALLLLLLAALG 203
>gnl|CDD|223682 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease
component [Inorganic ion transport and metabolism].
Length = 334
Score = 36.1 bits (84), Expect = 0.082
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLS--APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 211
+L +S A L +L+ LLF + + L+A L L+A L V L A L +PL
Sbjct: 88 ILGISSGASLGAVLAILLFPLGLGISIYLLPLAAFLGALLAA-LLVYLIARLRGGGLSPL 146
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVS 270
++L+ ++LSA L S LL ++ + + L SL A S +L L +
Sbjct: 147 RLILA---GIALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVIL 203
Query: 271 LSAPLSVLLSALLFV---------SLSAPLSVL-LSALLFVSLSAPLSVLLSALL-FVSL 319
+ L + LS L + SL ++ L L LL SL +V L + FV L
Sbjct: 204 IGLLLLLFLSRKLNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVGL 263
Query: 320 SAP 322
AP
Sbjct: 264 IAP 266
Score = 31.9 bits (73), Expect = 1.8
Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 151 VSALLFVSLSAPLS---VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 207
V A+L L +S + L+A L L+A L V L A L +PL ++L+ ++L
Sbjct: 100 VLAILLFPLGLGISIYLLPLAAFLGALLAA-LLVYLIARLRGGGLSPLRLILA---GIAL 155
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLSAPLSVLLSAL 266
SA L S LL ++ + + L SL A S +L L + + L + LS
Sbjct: 156 SALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLSRK 215
Query: 267 LFV---------SLSAPLSVL-LSALLFVSLSAPLSVLLSALL-FVSLSAP 306
L + SL ++ L L LL SL +V L + FV L AP
Sbjct: 216 LNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVGLIAP 266
Score = 31.1 bits (71), Expect = 3.3
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 163 LSVLLSALLFVSLSA----PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 218
L +LL LL +SLS LS +L AL + S ++L L L A +L+ A
Sbjct: 11 LLLLLILLLLLSLSLGAVISLSDVLQALFGLDGSGKHVIVLDIRLPRILLA---ILVGAA 67
Query: 219 LFVSLSAPLSVLL------SALLFVSLSAPLSVLLSALLFVSLS--APLSVLLSALLFVS 270
L V+ + L + +L +S A L +L+ LLF + + L+A L
Sbjct: 68 LAVAGAL-LQGVTRNPLADPGILGISSGASLGAVLAILLFPLGLGISIYLLPLAAFLGAL 126
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L+A L V L A L +PL ++L+ ++LSA L S LL ++ + +
Sbjct: 127 LAA-LLVYLIARLRGGGLSPLRLILA---GIALSALFGALTSLLLILADDSLALQAILFW 182
Query: 331 LFVSLS 336
L SL
Sbjct: 183 LLGSLG 188
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 35.8 bits (83), Expect = 0.082
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 9/153 (5%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ L VS +PL LL +L L + +L+ LL L P LL LL L
Sbjct: 125 IKERLLVSGVSPLKYLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGL 184
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLSVLLSALLF 268
+ L ALL S+ ++ + + + L +LLS L S L
Sbjct: 185 AYIALGALLG-------SLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSI 237
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 301
+ AP+ LL + LS+++ L V
Sbjct: 238 IPFFAPIDGLLRIIYGDLAEILLSLIILLLFGV 270
Score = 32.3 bits (74), Expect = 1.3
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 196 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 255
LL LLF+ + ++ +++ S + L VS +PL LL +L L
Sbjct: 95 YYLLGLLLFLLILIGALIIALSIVEEKESR-----IKERLLVSGVSPLKYLLGKILGDLL 149
Query: 256 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSAL 314
+ +L+ LL L P LL LL L + L ALL + ++ ++L+ ++
Sbjct: 150 VGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISI 209
Query: 315 LFVSLSAPLSVL 326
L + LS L
Sbjct: 210 LILLLSGFFGGL 221
Score = 31.2 bits (71), Expect = 2.8
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
LL LLF+ + ++ +++ S + L VS +PL LL +L L
Sbjct: 95 YYLLGLLLFLLILIGALIIALSIVEEKESR-----IKERLLVSGVSPLKYLLGKILGDLL 149
Query: 272 SAPLSVLLSALL----FVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-----FVSLSAP 322
+ +L+ LL + L +LL LL+ L LL +L + + +
Sbjct: 150 VGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISI 209
Query: 323 LSVLLSALLFVSLSAP 338
L +LLS P
Sbjct: 210 LILLLSGFFGGLFPLP 225
Score = 30.8 bits (70), Expect = 3.5
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVS 684
L L+ + +LL L + L +L LL+ L L LL + +A+L +S
Sbjct: 149 LVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVIS 208
Query: 685 PSAPLFVLLSAPLFVL 700
L LF L
Sbjct: 209 ILILLLSGFFGGLFPL 224
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 36.1 bits (84), Expect = 0.087
Identities = 58/209 (27%), Positives = 85/209 (40%), Gaps = 26/209 (12%)
Query: 158 SLSAPLSVLLSALLFVSLSAPLS-VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 216
+ LS+LL L + + L +L AL V L+ PL LL AL LS S L+S
Sbjct: 1 AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIALLIALGVG-LSVGTSALIS 59
Query: 217 ALL--------------FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLS 260
+ + L+ L +LL+ALL S + LL A V + L+
Sbjct: 60 QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFF-SPLILSLLGAEEEVIELAATYLT 118
Query: 261 VLLSALLFVSLSAPLSVLL-------SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 313
+L+ L L A LS +L +A++ LS L++LL LL L P + A
Sbjct: 119 ILILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGA 178
Query: 314 LLFVSLSAPLSVLLSALLFVSLSAPLSCT 342
L +S + LL + L
Sbjct: 179 ALATVISYVIGALLLLIYLRKGKKILKFK 207
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 35.9 bits (83), Expect = 0.088
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 15/172 (8%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
L +L + L + +S+L LLF S+ L S LL L+ +S+S
Sbjct: 112 GALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLG------SSLLYGLVLLSIS 165
Query: 225 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 284
+S L S S S L V + LL ++ L +L ++L + ++ L+ L L
Sbjct: 166 LLISSLFS-----SSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPL 220
Query: 285 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 336
L+ +L F L+ L F L +++ L+F+S++
Sbjct: 221 YLLAELAFTILLQSGFSDSILTLNESLLLAWFNI----LILIIYILIFLSIA 268
Score = 31.7 bits (72), Expect = 1.9
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 29/186 (15%)
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 222
LL A + + L+ ++LS LL + L + +L+F L++LL A L S
Sbjct: 26 AIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLPLLAILLGADLISS 85
Query: 223 ----------LSAPLS---VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
LS P+S ++L L L +L + L + +S+L LLF
Sbjct: 86 EFESGTIKLLLSKPISRSNIVLGKFLG---------ALLVILIIILISFISLLTLLLLFG 136
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
S+ L S LL L+ +S+S +S L S+ ++L + +LL
Sbjct: 137 FPGNVSSISRLLLFLG------SSLLYGLVLLSISLLISSLFSS-SSLALLVSIILLLLF 189
Query: 330 LLFVSL 335
++ SL
Sbjct: 190 IIAFSL 195
Score = 31.3 bits (71), Expect = 2.4
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 151 VSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
+ ALL + + +S LL+ LL +S + LLF S LL L+ +S+S
Sbjct: 111 LGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLF-----LGSSLLYGLVLLSIS 165
Query: 209 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 268
+S L S S S L V + LL ++ L +L ++L + ++ L+ L L
Sbjct: 166 LLISSLFS-----SSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPL 220
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 320
L+ +L F L+ L F L +++ L+F+S++
Sbjct: 221 YLLAELAFTILLQSGFSDSILTLNESLLLAWFNI----LILIIYILIFLSIA 268
>gnl|CDD|223629 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 35.7 bits (83), Expect = 0.088
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 161 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 220
+ F L + L +L + PLS L++ + + S L S +
Sbjct: 1 SARKRSRVIPGFGLLLGLTLLFLLLILLL----PLSALVTKSSSLGWAGFWSALTSPRVL 56
Query: 221 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL-L 279
+L L++L + +L + L A + V P L+ AL+ + + P +V +
Sbjct: 57 AALK--LTLLTAF--AATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGI 112
Query: 280 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 325
+ LL + L LL+ L PL V++ A+ FVSL P V
Sbjct: 113 ALLLLFGPNGLLGSLLAPLGIKFAFTPLGVIV-AMFFVSL--PFVV 155
Score = 35.7 bits (83), Expect = 0.10
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 209
F L + L +L + PLS L++ + + S L S + +L
Sbjct: 6 SRVIPGFGLLLGLTLLFLLLILLL----PLSALVTKSSSLGWAGFWSALTSPRVLAALK- 60
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL-LSALLF 268
L++L + +L + L A + V P L+ AL+ + + P +V ++ LL
Sbjct: 61 -LTLLTAF--AATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLL 117
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 309
+ L LL+ L PL V++ A+ FVSL P V
Sbjct: 118 FGPNGLLGSLLAPLGIKFAFTPLGVIV-AMFFVSL--PFVV 155
Score = 34.2 bits (79), Expect = 0.30
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 205 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL--------LFVSLS 256
S P LL L + L L + LSAL+ S S + SAL L ++L
Sbjct: 5 RSRVIPGFGLLLGLTLLFLLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLL 64
Query: 257 APLSVLLSALLFVSLSA--------PLSVLLSALLFVSLSAPLSVL-LSALLFVSLSAPL 307
+ L L+F A P L+ AL+ + + P +V ++ LL + L
Sbjct: 65 TAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLL 124
Query: 308 SVLLSALLFVSLSAPLSVLLSALLFVSL 335
LL+ L PL V++ A+ FVSL
Sbjct: 125 GSLLAPLGIKFAFTPLGVIV-AMFFVSL 151
Score = 33.0 bits (76), Expect = 0.77
Identities = 36/118 (30%), Positives = 49/118 (41%)
Query: 620 LLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSA 679
LL + L L + LSA + S S SAL + A L + L + L
Sbjct: 14 LLLGLTLLFLLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLN 73
Query: 680 LLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPL 737
L+F P A + V P L+ AL+ + + P V ALL + L SL APL
Sbjct: 74 LVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPL 131
>gnl|CDD|227621 COG5305, COG5305, Predicted membrane protein [Function unknown].
Length = 552
Score = 36.2 bits (84), Expect = 0.091
Identities = 32/147 (21%), Positives = 45/147 (30%), Gaps = 20/147 (13%)
Query: 642 FVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSA-----P 696
V+ L L + L + + L S + + LL P
Sbjct: 40 AVTSYRLLASLLISFLQQPIDGAIASAPYLWLDEFQSISASKTVIETVLSLLLELLVHPP 99
Query: 697 LFVLLSALLFVLLSAPLFVLRS-ALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRG 755
L+ LL+ L L RS + L L+ PL L LF +ALL
Sbjct: 100 LYFLLAHFWMALFGNSLLASRSLSALLSALAIPLVYWLGRELFGSTTALLA--------A 151
Query: 756 WLMVDSPIPTLA------YTLIYLSIV 776
LM SP Y L + +
Sbjct: 152 ALMAISPFHIFYSQEARSYALAVATTL 178
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 36.1 bits (84), Expect = 0.100
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSV 675
+ L++L L + L L LL +S PL + L +LL P + L PL++
Sbjct: 13 LVLLVL---LLLFLLVDLLRLLD--DILSKGLPLADI---LRLLLLLLPSILELILPLAL 64
Query: 676 LLSALLFV---SPSAPLFVLLSA---PLFVLLSALLFVLL 709
LL+ LL + + + L L +A +L L+ LL
Sbjct: 65 LLAVLLTLGRLARDSELTALRAAGISLKRLLRPVLILALL 104
Score = 30.7 bits (70), Expect = 4.3
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-----FVSLSA 209
+ P ++L LL + L L LL +S PL+ +L LL + L
Sbjct: 3 ILREFLKPFLLVLLVLLLLFLLVDLLRLLD--DILSKGLPLADILRLLLLLLPSILELIL 60
Query: 210 PLSVLLSALL-FVSLSA--PLSVLLSA------LLFVSLSAPLSVLLSALLFV 253
PL++LL+ LL L+ L+ L +A LL L L++LLS L F+
Sbjct: 61 PLALLLAVLLTLGRLARDSELTALRAAGISLKRLLRPVL--ILALLLSLLSFL 111
Score = 30.7 bits (70), Expect = 4.3
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 187 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-----FVSLSA 241
+ P ++L LL + L L LL +S PL+ +L LL + L
Sbjct: 3 ILREFLKPFLLVLLVLLLLFLLVDLLRLLD--DILSKGLPLADILRLLLLLLPSILELIL 60
Query: 242 PLSVLLSALL-FVSLSA--PLSVLLSA------LLFVSLSAPLSVLLSALLFV 285
PL++LL+ LL L+ L+ L +A LL L L++LLS L F+
Sbjct: 61 PLALLLAVLLTLGRLARDSELTALRAAGISLKRLLRPVL--ILALLLSLLSFL 111
Score = 30.7 bits (70), Expect = 4.3
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 219 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-----FVSLSA 273
+ P ++L LL + L L LL +S PL+ +L LL + L
Sbjct: 3 ILREFLKPFLLVLLVLLLLFLLVDLLRLLD--DILSKGLPLADILRLLLLLLPSILELIL 60
Query: 274 PLSVLLSALL-FVSLSA--PLSVLLSA------LLFVSLSAPLSVLLSALLFV 317
PL++LL+ LL L+ L+ L +A LL L L++LLS L F+
Sbjct: 61 PLALLLAVLLTLGRLARDSELTALRAAGISLKRLLRPVL--ILALLLSLLSFL 111
>gnl|CDD|225844 COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes
[Cell envelope biogenesis, outer membrane].
Length = 424
Score = 35.9 bits (83), Expect = 0.10
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVL-LSALLFVSLSAPLSVLLSALLFVSLS 208
PV+ L +SL L L LL + S+ + +L ++ L + LLF+SL
Sbjct: 61 PVAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLF 120
Query: 209 APL-------SVLLSALLFVSLSAPLSVLLSA--LLFVSLSAPLSVLLSALLFVSLSAPL 259
A L VLL ++L L A A L +L L V SL A
Sbjct: 121 ALLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALANLWRVLGVYAFKNYAGSLMAAA 180
Query: 260 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL-LSALLFVSLSAPLSVLLSALLFVS 318
+ + LL++ S L LL+AL + L+ALL + L L ++L L V
Sbjct: 181 LLFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLAALLALILLLALFLVLLLLRRVL 240
Query: 319 LSAPLSVLLSALLFV 333
L L+ LL+ +L
Sbjct: 241 LLGLLAALLALILIA 255
Score = 35.9 bits (83), Expect = 0.11
Identities = 61/214 (28%), Positives = 84/214 (39%), Gaps = 27/214 (12%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 213
+ + A L + L LL + L +LLS L + L +LL LLF SLSA +
Sbjct: 39 GSTILILAALLLALLLLLLLFLPVAFKLLLSLLNLLLFLRLLLLLLLWLLFSSLSAGAPI 98
Query: 214 LLSA-----------LLFVSLSAPL-------SVLLSALLFVSLSAPLSVLLSA--LLFV 253
LL A LLF+SL A L VLL ++L L A A L
Sbjct: 99 LLLATILLLLLTARLLLFISLFALLLNGRILLLVLLGSVLLGLLLALGLAGAGAEELALA 158
Query: 254 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-------SLSAP 306
+L L V SL A + + LL++ S L LL+AL + S S
Sbjct: 159 NLWRVLGVYAFKNYAGSLMAAALLFPALLLWILGSWLLGTLLAALALLIALLLTGSRSLA 218
Query: 307 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 340
+ L LL + L L + L ++ L
Sbjct: 219 ALLALILLLALFLVLLLLRRVLLLGLLAALLALI 252
Score = 32.9 bits (75), Expect = 0.97
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 610 LTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVS---LSAPLFVLRSALLFVLLSAPLF 666
L + LF+ L A L L S L ++ L+ L +L + L L
Sbjct: 13 LIPKLGALWIAALVFLFISL-AFLAGLGSTILILAALLLALLLLLLLFLPVAFKLLLSLL 71
Query: 667 VLLSAPLSVLLSALLFVSPS---APLFVLLSAPLFVLLSALLFVLLSAPLFVLR-SALLF 722
LL +LL L + S +LL+ L +LL+A L + +S +L LL
Sbjct: 72 NLLLFLRLLLLLLLWLLFSSLSAGAPILLLATILLLLLTARLLLFISLFALLLNGRILLL 131
Query: 723 VLLSAPLFVSLSA 735
VLL + L L A
Sbjct: 132 VLLGSVLLGLLLA 144
>gnl|CDD|222385 pfam13796, Sensor, Putative sensor. This family is often found at
the N-terminus of proteins containing pfam07730 and
pfam02518. The N-termini of proteins containing these
two domains often function in stimulus sensing.
Length = 181
Score = 34.9 bits (81), Expect = 0.11
Identities = 46/178 (25%), Positives = 69/178 (38%), Gaps = 9/178 (5%)
Query: 156 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 215
++ L PL ++ LL V L L L +L V L L++A F L
Sbjct: 1 YLLLGLPLGLVAFVLLVVGLV--LGAGL-LVLGVGLPLLPLALVAARGFADLER---RRA 54
Query: 216 SALLFVSLSAP-LSVLLSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSALLFVSLS 272
ALL V + AP + L A L LL++ L PL V+L + L
Sbjct: 55 RALLGVPIPAPPRPRPPAPGPLARLRARLRDPATWRDLLWLLLHFPLGVVLFLVAVTLLV 114
Query: 273 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
A L +L + L + L + S L+V LL + ++ L+ L+ L
Sbjct: 115 AALGLLTAPLWWWVLPGGVGGWGLFWPVDSWPEALAVAALGLLLLLVALWLARGLARL 172
Score = 32.6 bits (75), Expect = 0.64
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 9/165 (5%)
Query: 172 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 231
++ L PL ++ LL V L L L +L V L L++A F L
Sbjct: 1 YLLLGLPLGLVAFVLLVVGLV--LGAGL-LVLGVGLPLLPLALVAARGFADLER---RRA 54
Query: 232 SALLFVSLSAP-LSVLLSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSALLFVSLS 288
ALL V + AP + L A L LL++ L PL V+L + L
Sbjct: 55 RALLGVPIPAPPRPRPPAPGPLARLRARLRDPATWRDLLWLLLHFPLGVVLFLVAVTLLV 114
Query: 289 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 333
A L +L + L + L + S L+V LL +
Sbjct: 115 AALGLLTAPLWWWVLPGGVGGWGLFWPVDSWPEALAVAALGLLLL 159
Score = 29.9 bits (68), Expect = 4.3
Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 188 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 247
++ L PL ++ LL V L L L +L V L L++A F L
Sbjct: 1 YLLLGLPLGLVAFVLLVVGLV--LGAGL-LVLGVGLPLLPLALVAARGFADLER---RRA 54
Query: 248 SALLFVSLSAP-LSVLLSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSALLFVSLS 304
ALL V + AP + L A L LL++ L PL V+L + L
Sbjct: 55 RALLGVPIPAPPRPRPPAPGPLARLRARLRDPATWRDLLWLLLHFPLGVVLFLVAVTLLV 114
Query: 305 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 339
A L +L + L + L + S L
Sbjct: 115 AALGLLTAPLWWWVLPGGVGGWGLFWPVDSWPEAL 149
Score = 29.1 bits (66), Expect = 8.0
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
LL++ L PL V+L + L A L +L + L + L + S L+
Sbjct: 91 DLLWLLLHFPLGVVLFLVAVTLLVAALGLLTAPLWWWVLPGGVGGWGLFWPVDSWPEALA 150
Query: 213 VLLSALLFVSLSAPLSVLLSAL 234
V LL + ++ L+ L+ L
Sbjct: 151 VAALGLLLLLVALWLARGLARL 172
>gnl|CDD|233873 TIGR02454, CbiQ_TIGR, cobalt ABC transporter, permease protein
CbiQ. This model represents the permease component of
the cobalt-specific ABC transporter. This model finds
permeases which are generally next to the other subunits
of the complex (CbiN and CbiO) or the cobalamin
biosynthesis protein CbiM which is a transmembrane
protein which likely interacts with the complex in some
manner. In genomes which possess all of these subunits
the ATPase is most likely running in the direction of
import (for the biosynthesis of coenzyme B12). In other
genomes, this subunit may be involved in the export of
cobalt and/or other closely related heavy metals
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 198
Score = 34.9 bits (81), Expect = 0.11
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 166 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 225
L+SAL + L+ L ++ L+ + LL PL +LL +++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFAL--------LLVGLAGIPLRILL---KRLAVPI 55
Query: 226 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLF 284
++ LL S P LL +S++ ++ + L + SL++ LSA+
Sbjct: 56 GFLLVGLLLLLFSNGTPGEPLLVLGPLLSITRE-GLVYALTLALRSLTS-----LSAVYL 109
Query: 285 VSLSAPLSVLLSALLFVSLSAPLSVLLS 312
++L+ P LLSAL + + L +L
Sbjct: 110 LALTTPFPELLSALRRLGVPPLLVEILL 137
Score = 34.9 bits (81), Expect = 0.11
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 182 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 241
L+SAL + L+ L ++ L+ + LL PL +LL +++
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFAL--------LLVGLAGIPLRILL---KRLAVPI 55
Query: 242 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLF 300
++ LL S P LL +S++ ++ + L + SL++ LSA+
Sbjct: 56 GFLLVGLLLLLFSNGTPGEPLLVLGPLLSITRE-GLVYALTLALRSLTS-----LSAVYL 109
Query: 301 VSLSAPLSVLLSALLFVSLSAPLSVLLS 328
++L+ P LLSAL + + L +L
Sbjct: 110 LALTTPFPELLSALRRLGVPPLLVEILL 137
Score = 34.6 bits (80), Expect = 0.16
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 159 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 218
+SA ++L+ LL ++ + + + LL PL +L L +++ ++ L
Sbjct: 8 ISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRIL---LKRLAVPIGFLLVGLLL 64
Query: 219 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSV 277
L S P LL +S++ ++ + L + SL++ LSA+ ++L+ P
Sbjct: 65 LLFSNGTPGEPLLVLGPLLSITRE-GLVYALTLALRSLTS-----LSAVYLLALTTPFPE 118
Query: 278 LLSALLFVSLSAPLSVLLS 296
LLSAL + + L +L
Sbjct: 119 LLSALRRLGVPPLLVEILL 137
Score = 34.2 bits (79), Expect = 0.23
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 153 ALLFVSLSAP------LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 206
ALL +++ P + + + LL PL +L L +++ ++ LL S
Sbjct: 12 ALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRIL---LKRLAVPIGFLLVGLLLLLFS 68
Query: 207 LSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSVLLSA 265
P LL +S++ ++ + L + SL++ LSA+ ++L+ P LLSA
Sbjct: 69 NGTPGEPLLVLGPLLSITRE-GLVYALTLALRSLTS-----LSAVYLLALTTPFPELLSA 122
Query: 266 LLFVSLSAPLSVLLS 280
L + + L +L
Sbjct: 123 LRRLGVPPLLVEILL 137
Score = 29.5 bits (67), Expect = 6.5
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 636 LLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSA 695
L+SA + L+ L + L+ + + L L PL +LL L L LL
Sbjct: 7 LISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFL-LVGLLLL 65
Query: 696 PLFVLLSALLFVLLSAPLFV----LRSALLFVL-----LSAPLFVSLSAPLFVLRSAL 744
++L L + L AL L LSA ++L+ P L SAL
Sbjct: 66 LFSNGTPGEPLLVLGPLLSITREGLVYALTLALRSLTSLSAVYLLALTTPFPELLSAL 123
Score = 29.5 bits (67), Expect = 6.8
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ LL PL +L L +++ ++ LL S P LL +S++
Sbjct: 32 FALLLVGLAGIPLRIL---LKRLAVPIGFLLVGLLLLLFSNGTPGEPLLVLGPLLSITRE 88
Query: 211 LSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 264
++ + L + SL++ LSA+ ++L+ P LLSAL + + L +L
Sbjct: 89 -GLVYALTLALRSLTS-----LSAVYLLALTTPFPELLSALRRLGVPPLLVEILL 137
>gnl|CDD|221363 pfam11992, DUF3488, Domain of unknown function (DUF3488). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 323 to 339 amino acids in length. This domain is
found associated with pfam01841. This domain has a
conserved PLW sequence motif. This domain contains 6
transmembrane helices.
Length = 321
Score = 35.7 bits (83), Expect = 0.13
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
+ L+A + L L A V+L L L+ L A + V L +L
Sbjct: 58 GLALAAAAGLALQYGTLGGLDA--GVALLVLLLALKLLELRSRRDARVLVFLG--FFLLA 113
Query: 678 SALLFVSPSAPLFVLLSAPLFVLLSAL--LFVLLSAPLFVLRSALLFVLLSAPLFVSLSA 735
+ LF S S + L L +LL+AL L P LR A +L + PL +
Sbjct: 114 TNFLF-SQSLLTALYLLLALLLLLAALVSLHQPEGRPRQRLRLAGKLLLQALPLAL---- 168
Query: 736 PLFVLRSALLFVLL 749
+LF+L
Sbjct: 169 --------VLFLLF 174
>gnl|CDD|226914 COG4539, COG4539, Predicted membrane protein [Function unknown].
Length = 180
Score = 34.8 bits (80), Expect = 0.13
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
VLL P+ L + +S L +S++ +F LR L F LL L +LL L L
Sbjct: 36 AVLLHRPVIGLS--NSKLQISPALLLSVAFSIFYLRLDLPFGLLMGVLLLLLVWILLALA 93
Query: 678 --SALLFVSPSAPLFVLLSAPLFV-----------LLSALLFVLLSAPLFVLRSALLFV 723
++ LFV+ FV L+ L+ L+ APLF+L L +
Sbjct: 94 AHRTDAWLKQGLGLFVIGWIFQFVGHGVFEKRKPALVDNLVQSLVIAPLFILAETLFKL 152
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 409
Score = 35.6 bits (83), Expect = 0.13
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 11/165 (6%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
S ++L + +L LL + S PLS LL + S +L AL +L+
Sbjct: 76 WSTAFRITL---ILSILGGLLLLLFSKPLSSLL--FGDIDYSWVFILLGLALPLFALNNL 130
Query: 211 LSVLLSAL----LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 266
L +L+ L + ++ +S L+ L+ V L L ALL + L+ L L++ +
Sbjct: 131 LLAILNGLKEIKRYALINI-ISSLIGLLVSVLLVYFYG-LKGALLALVLNQSLIFLVTLI 188
Query: 267 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 311
L L + L L +LS PLS ++
Sbjct: 189 YSRKQPWFKLKYLWGRLDKDIIKKLLKFSLMALVSALSLPLSQII 233
>gnl|CDD|219524 pfam07698, 7TM-7TMR_HD, 7TM receptor with intracellular HD
hydrolase. These bacterial 7TM receptor proteins have
an intracellular pfam01966. This entry corresponds to
the 7 helix transmembrane domain. These proteins also
contain an N-terminal extracellular domain.
Length = 189
Score = 34.4 bits (80), Expect = 0.18
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
+LLS +L +SL + L ++ ++ A +LL+ LL L+ +SVLL+ LL +
Sbjct: 37 LLLSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVLLALLLGLMFG 96
Query: 225 APLSVLLSALLFVSLSAPLSV--------LLSALLFVSLSAPLSVLLSALLFVSLSAPLS 276
L LL L L LSV LL A L V+L L L L+ + L
Sbjct: 97 NNLEFLL-YALLGGLVGALSVRRLRSRSQLLQAGLLVALVNVLLYLALGLIQGGSFSWLE 155
Query: 277 VLLSALLFVSLSAPLSVLLSALL 299
+L L ++L LL
Sbjct: 156 ILTDLGLGFISGLLSAILTIGLL 178
Score = 34.4 bits (80), Expect = 0.18
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 181 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 240
+LLS +L +SL + L ++ ++ A +LL+ LL L+ +SVLL+ LL +
Sbjct: 37 LLLSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVLLALLLGLMFG 96
Query: 241 APLSVLLSALLFVSLSAPLSV--------LLSALLFVSLSAPLSVLLSALLFVSLSAPLS 292
L LL L L LSV LL A L V+L L L L+ + L
Sbjct: 97 NNLEFLL-YALLGGLVGALSVRRLRSRSQLLQAGLLVALVNVLLYLALGLIQGGSFSWLE 155
Query: 293 VLLSALLFVSLSAPLSVLLSALL 315
+L L ++L LL
Sbjct: 156 ILTDLGLGFISGLLSAILTIGLL 178
Score = 34.4 bits (80), Expect = 0.18
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 197 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 256
+LLS +L +SL + L ++ ++ A +LL+ LL L+ +SVLL+ LL +
Sbjct: 37 LLLSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVLLALLLGLMFG 96
Query: 257 APLSVLLSALLFVSLSAPLSV--------LLSALLFVSLSAPLSVLLSALLFVSLSAPLS 308
L LL L L LSV LL A L V+L L L L+ + L
Sbjct: 97 NNLEFLL-YALLGGLVGALSVRRLRSRSQLLQAGLLVALVNVLLYLALGLIQGGSFSWLE 155
Query: 309 VLLSALLFVSLSAPLSVLLSALL 331
+L L ++L LL
Sbjct: 156 ILTDLGLGFISGLLSAILTIGLL 178
Score = 31.7 bits (73), Expect = 1.1
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+S +L +SL + L ++ ++ A +LL+ LL L+ +SVLL+ LL +
Sbjct: 39 LSLILILSLLLAKLISLISIPYLVPLAAAPMLLAILLGSRLALVVSVLLALLLGLMFGNN 98
Query: 211 LSVLLSALLFVSLSAPLSV--------LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 262
L LL L L LSV LL A L V+L L L L+ + L +L
Sbjct: 99 LEFLL-YALLGGLVGALSVRRLRSRSQLLQAGLLVALVNVLLYLALGLIQGGSFSWLEIL 157
Query: 263 LSALLFVSLSAPLSVLLSALL 283
L ++L LL
Sbjct: 158 TDLGLGFISGLLSAILTIGLL 178
>gnl|CDD|224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 35.3 bits (82), Expect = 0.20
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFV-LLSAPLS 674
+ L LL A L +F + + A VL L+ +L+ L + +L LS
Sbjct: 13 LLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLVTLLS 72
Query: 675 VLLS---ALLFVS---PSAPLF-VLLSAPLFV--LLSALLFVLLSAPLFVLRSALLFVLL 725
V+L A L P L LL+ PL + + AL ++ L P L + L +
Sbjct: 73 VVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELLGF 132
Query: 726 SAPLFVSLSAPLFVL 740
+P L L L
Sbjct: 133 ESPSIYGLGGILLAL 147
Score = 34.2 bits (79), Expect = 0.42
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 11/190 (5%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV--LLSALLFVSLSAPL 211
LL +A L+V+L ALL L LS LL PL+V ++ AL + L
Sbjct: 339 LLLALAAALLAVVL-ALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAP 397
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFV--SLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
LL L+ L L+ L L F SL A L + +L + S S L +
Sbjct: 398 DGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGAS-GLRRFRRI 456
Query: 270 SLSAPLSVLLSALLFVSLSA----PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 325
+L LL+A V + ++LL + +L+ + LLS +A L++
Sbjct: 457 TLPLLRPGLLAAAALVFALSIGELSATLLLGSPGTRTLTVYIYNLLSD-GRYGDAAALAL 515
Query: 326 LLSALLFVSL 335
+L + +
Sbjct: 516 ILLVVSLLLF 525
Score = 32.2 bits (74), Expect = 1.6
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 14/171 (8%)
Query: 174 SLSAPLSVLLSALLFVSLSAPLSV---LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 230
S + LL+ LL + +A L + L A +LS S L L L
Sbjct: 236 SFDLARAALLALLLLLITAALLLLERRLRRAKQKSTLSGKGSRPKQRLG--RLRRLLGAA 293
Query: 231 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 290
L LL + PL ++ ++ PLS++L++ F LL++LL +A
Sbjct: 294 LIVLLLFLILLPLLAVVLPSFVLNWGRPLSLVLASPQFWQA------LLNSLLLALAAAL 347
Query: 291 LSVLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 338
L+V+L+ A L + LS LL L + L+ P VL LL + +
Sbjct: 348 LAVVLALLLAYAVRRLRSRLSRLLERLSMLPLAVPGVVLALGLLLLFRAPD 398
Score = 29.9 bits (68), Expect = 7.6
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
+ LL + ++ +++ L A+ +LS + +S VL + L+ L
Sbjct: 9 GSILLLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLV 68
Query: 209 APLSVLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 265
LSV+L A L P LL LL + L P + AL ++SL P L +
Sbjct: 69 TLLSVVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIP--PFVVALAWISLFGPSGPLAAL 126
Query: 266 LLFVSLSAPLSVLLSALLFVSL--SAPLSVLL 295
L + +P L +L + + PL+ LL
Sbjct: 127 LELLGFESPSIYGLGGILLALVFFNYPLAYLL 158
>gnl|CDD|232940 TIGR00361, ComEC_Rec2, DNA internalization-related competence
protein ComEC/Rec2. Apparant orthologs are found in 5
species so far (Haemophilus influenzae, Escherichia
coli, Bacillus subtilis, Neisseria gonorrhoeae,
Streptococcus pneumoniae), of which all but E. coli are
model systems for the study of competence for natural
transformation. This protein is a predicted multiple
membrane-spanning protein likely to be involved in DNA
internalization. In a large number of bacterial species
not known to exhibit competence, this protein is
replaced by a half-length N-terminal homolog of unknown
function, modelled by the related model ComEC_N-term.
The role for this protein in species that are not
naturally transformable is unknown [Cellular processes,
DNA transformation].
Length = 662
Score = 35.3 bits (81), Expect = 0.21
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 19/189 (10%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS----APLSVLLSALLFV 205
+ LL APL +L+ L A ++ L L SL + + + + + +
Sbjct: 193 EKAPLLLGLFCAPLYAMLTGAAPPVLRA--ALALGVYLAGSLVKRRVSSATAICLSYIVL 250
Query: 206 SLSAPLSVLLSALLFVSLSAPLSVLLSALLF----VSLSAPLSVLLSALLFVSLSAPLSV 261
L P LLSA ++S +A S++L +F L L ++S L + L A L
Sbjct: 251 LLFDPYH-LLSASFWLSFAAVFSLILWYSIFPQVKTQLGPVLRAVVS-LTHLQLGAQL-G 307
Query: 262 LLSALLF----VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 317
L L+ SL + + +L+ + PL +L+A+L +SLS L + +
Sbjct: 308 SLPIQLYHFHGFSLISFPANMLAVPFYTFCIVPL--ILAAVLLLSLSGSFGRLQGSWFDL 365
Query: 318 SLSAPLSVL 326
+S L ++
Sbjct: 366 LISLALRLI 374
Score = 34.9 bits (80), Expect = 0.26
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 170 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS----APLSVLLSALLFVSLSA 225
LL APL +L+ L A ++ L L SL + + + + + + L
Sbjct: 197 LLLGLFCAPLYAMLTGAAPPVLRA--ALALGVYLAGSLVKRRVSSATAICLSYIVLLLFD 254
Query: 226 PLSVLLSALLFVSLSAPLSVLLSALLF----VSLSAPLSVLLSALLFVSLSAPLSVLLSA 281
P LLSA ++S +A S++L +F L L ++S L + L A L L
Sbjct: 255 PYH-LLSASFWLSFAAVFSLILWYSIFPQVKTQLGPVLRAVVS-LTHLQLGAQL-GSLPI 311
Query: 282 LLF----VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 336
L+ SL + + +L+ + PL +L+A+L +SLS L + + +S
Sbjct: 312 QLYHFHGFSLISFPANMLAVPFYTFCIVPL--ILAAVLLLSLSGSFGRLQGSWFDLLIS 368
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 35.1 bits (81), Expect = 0.23
Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 24/167 (14%)
Query: 169 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 228
ALL L +LL L L + L A +L A L+
Sbjct: 18 ALLRDLLQGIFGLLLP--FEKGLYVLWLEGTLRLGVLWLGALGILLNKA------GGLLA 69
Query: 229 VLLSALLFVSLSAPLSVLLSALLFVSLSAP---LSVLLSALLFVSLSAPLSVLLSALLFV 285
+ + + L+ P L AL F P +++ L + S A ++ +AL V
Sbjct: 70 AVKPLVAALCLATPSLSSLRALAFWEALDPAVRVALGLWSWFVWSYGA--ALPAAALWAV 127
Query: 286 SLSAPLSVLLSA--------LLF--VSLSAP-LSVLLSALLFVSLSA 321
SA S + LLF + LS L+SA +F++LS+
Sbjct: 128 LSSAGASEKEAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSS 174
Score = 34.7 bits (80), Expect = 0.33
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 13/129 (10%)
Query: 201 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 260
ALL L +LL L L + L A +L A L+
Sbjct: 18 ALLRDLLQGIFGLLLP--FEKGLYVLWLEGTLRLGVLWLGALGILLNKA------GGLLA 69
Query: 261 VLLSALLFVSLSAPLSVLLSALLFVSLSAP---LSVLLSALLFVSLSAPLSVLLSALLFV 317
+ + + L+ P L AL F P +++ L + S A ++ +AL V
Sbjct: 70 AVKPLVAALCLATPSLSSLRALAFWEALDPAVRVALGLWSWFVWSYGA--ALPAAALWAV 127
Query: 318 SLSAPLSVL 326
SA S
Sbjct: 128 LSSAGASEK 136
Score = 33.9 bits (78), Expect = 0.54
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 13/127 (10%)
Query: 217 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 276
ALL L +LL L L + L A +L A L+
Sbjct: 18 ALLRDLLQGIFGLLLP--FEKGLYVLWLEGTLRLGVLWLGALGILLNKA------GGLLA 69
Query: 277 VLLSALLFVSLSAPLSVLLSALLFVSLSAP---LSVLLSALLFVSLSAPLSVLLSALLFV 333
+ + + L+ P L AL F P +++ L + S A ++ +AL V
Sbjct: 70 AVKPLVAALCLATPSLSSLRALAFWEALDPAVRVALGLWSWFVWSYGA--ALPAAALWAV 127
Query: 334 SLSAPLS 340
SA S
Sbjct: 128 LSSAGAS 134
Score = 32.8 bits (75), Expect = 1.1
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 24/159 (15%)
Query: 153 ALLFVSLSAPLSVLLSA--------LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 204
ALL L +LL L L + +L L+ + +
Sbjct: 18 ALLRDLLQGIFGLLLPFEKGLYVLWLEGTLRLGVLWLGALGILLNKAGGLLAAVKPLVAA 77
Query: 205 VSLSAPLSVLLSALLFVSLSAP---LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 261
+ L+ P L AL F P +++ L + S A ++ +AL V SA S
Sbjct: 78 LCLATPSLSSLRALAFWEALDPAVRVALGLWSWFVWSYGA--ALPAAALWAVLSSAGASE 135
Query: 262 LLSA--------LLF--VSLSAP-LSVLLSALLFVSLSA 289
+ LLF + LS L+SA +F++LS+
Sbjct: 136 KEAEQGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSS 174
Score = 30.8 bits (70), Expect = 4.5
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
V L L + +L L+ + + + L+ P L AL F
Sbjct: 38 LYVLWLEGTLRLGVLWLGALGILLNKAGGLLAAVKPLVAALCLATPSLSSLRALAFWEAL 97
Query: 209 AP---LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA--------LLF--VSL 255
P +++ L + S A ++ +AL V SA S + LLF + L
Sbjct: 98 DPAVRVALGLWSWFVWSYGA--ALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGL 155
Query: 256 SAP-LSVLLSALLFVSLSA 273
S L+SA +F++LS+
Sbjct: 156 SGRDWPWLISAFVFLTLSS 174
>gnl|CDD|217079 pfam02516, STT3, Oligosaccharyl transferase STT3 subunit. This
family consists of the oligosaccharyl transferase STT3
subunit and related proteins. The STT3 subunit is part
of the oligosaccharyl transferase (OTase) complex of
proteins and is required for its activity. In
eukaryotes, OTase transfers a lipid-linked
core-oligosaccharide to selected asparagine residues in
the ER. In the archaea STT3 occurs alone, rather than in
an OTase complex, and is required for N-glycosylation of
asparagines.
Length = 650
Score = 35.1 bits (81), Expect = 0.23
Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 29/192 (15%)
Query: 624 PLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVL---LSAPLSVLLSAL 680
PL L+ L+ ++ L SL F L ++ LL ++L L L+ L++A
Sbjct: 72 PLLPYLTMALYGIIFLFLPFSLREVCFWL-PPVIGGLLGIATYLLVRELKNDLAGLIAAF 130
Query: 681 LFVSPSAPLFVLLSAP---------LFVLLSALLFVLLS-------APLFVLRSALLFVL 724
L AP +V + +F+ L L F LL+ VL LF++
Sbjct: 131 LLA--IAPGYVSRTVAGFYDTDMLAIFLPLLVLFFWLLAIKTGSNRIIYAVLAGLPLFLM 188
Query: 725 LSA----PLFVSLSAPLFVLRSALLFVLLNERTRGWLM-VDSPIPTLAYTLIYLSIVTIG 779
A +F+ + A LF+L + L+ + L+ I T+ +I V
Sbjct: 189 ALAWGGYQVFLLILALLFIL-ALLIMGRFEPK-LLILVGFSYLIATIVGGIIQYLFVGFA 246
Query: 780 PRLMRDRKPYKL 791
+ L
Sbjct: 247 KVRSSEHMGAFL 258
>gnl|CDD|224093 COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type
transport systems, permease components [Carbohydrate
transport and metabolism].
Length = 316
Score = 34.4 bits (80), Expect = 0.24
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPL-FVLLSA--PLSVLLSALL 681
VLL +F L+S P F+SLS L +LR A + +L+ + FV+++ LSV S +
Sbjct: 16 ALVLLVL-VFSLISPPGFLSLSNLLNILRQAAILGILALGMTFVIITGGIDLSV-GSVVA 73
Query: 682 FVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLR 741
+ A + L +LL ALL L L L + LL L P F++ +F+LR
Sbjct: 74 LAAVVAASLLAAGGGLPILL-ALLAALAVGALIGLINGLLVARLRIPPFIATLGTMFILR 132
Query: 742 SALLFV 747
L +
Sbjct: 133 GLALLL 138
>gnl|CDD|226165 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 34.6 bits (80), Expect = 0.26
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 7/156 (4%)
Query: 629 LSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAP-LSVLLSALLFVSPSA 687
L P L ++S L +LL ++ S+ + + LLF+ A
Sbjct: 5 LQLPYVGYSLESLMQNISQLKRDRSKFRLLILLVIIALLVWSSWFFTEVDFPLLFIG-GA 63
Query: 688 PLFVLLSAPLFVLLSALLFVL---LSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSAL 744
+ F AL L L+A L L A LL+A +++ R+
Sbjct: 64 NQMADFFSDFFPPDFALFSQLPDILTALLQTLAIAFAGTLLAA--ILAIPLAFLAARNLS 121
Query: 745 LFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGP 780
++ R L IP L + L++++ +GP
Sbjct: 122 PKRWISFPVRRLLDFIRTIPELVWALLFVAAFGLGP 157
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 34.5 bits (80), Expect = 0.27
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 5/182 (2%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 214
L + L S LL L + LL LL + + +L + L +LSA V+
Sbjct: 64 LELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLEALLFGAALSATSPVV 123
Query: 215 LSALL--FVSLSAPL-SVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVS 270
+ A+L L+ L +++L + A L +L AL V + L +LL L V+
Sbjct: 124 VLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVA 183
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L L L+ L ++ S + + L+ L L A L LS L L+ L
Sbjct: 184 LGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAELL-GLSGILGAFLAGL 242
Query: 331 LF 332
+
Sbjct: 243 VL 244
Score = 31.8 bits (73), Expect = 1.7
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 5/169 (2%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL--FVSLSA 209
S LL L + LL LL + + +L + L +LSA V++ A+L L+
Sbjct: 77 SILLLALLGVLIPFLLGLLLALLGGLGIPLLEALLFGAALSATSPVVVLAILKERGRLNT 136
Query: 210 PL-SVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
L +++L + A L +L AL V + L +LL L V+L L L+ L
Sbjct: 137 RLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWL 196
Query: 268 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 316
++ S + + L+ L L A L LS L L+ L+
Sbjct: 197 LRLITRFTSGDRELEVLLVLALALLAALLAELL-GLSGILGAFLAGLVL 244
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 34.0 bits (78), Expect = 0.29
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSV 675
+ L+LL L +LL L +L L + L L+ L L L V L+ L +
Sbjct: 77 LALLLLGLLLALLLGPLLLLLGLLGLLLGL---LYSPPLRLKRRPLLGELVVGLAFGLLI 133
Query: 676 LLSALLFVSPSAPLFVLLSAPLFVLLSALLFVL---------------LSAPLFVLRSAL 720
LL A +LL+ P+F+L A+L L L R+
Sbjct: 134 LLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALA 193
Query: 721 LFVLLSAPLFVSLSAPLFVLRSALLFVLL 749
L+ LL A + L L +L LL + +
Sbjct: 194 LYALLLAAALLLLLLLLLLLAPLLLLLAV 222
Score = 32.1 bits (73), Expect = 1.3
Identities = 46/191 (24%), Positives = 65/191 (34%), Gaps = 20/191 (10%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL---SVLLSALLFV 205
+P ALL L +LL+ L + L LL LL + S PL L L V
Sbjct: 68 SPREALLLGLALLLLGLLLA--LLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPLLGELVV 125
Query: 206 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL---------------LSAL 250
L+ L +LL A +LL+ +F+ A L L
Sbjct: 126 GLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVR 185
Query: 251 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 310
L + L LL A + L L +L LL +++ LL A + P
Sbjct: 186 LGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPA 245
Query: 311 LSALLFVSLSA 321
+ L L
Sbjct: 246 RTFLFIALLFG 256
Score = 31.3 bits (71), Expect = 2.5
Identities = 45/187 (24%), Positives = 63/187 (33%), Gaps = 20/187 (10%)
Query: 169 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL---SVLLSALLFVSLSA 225
ALL L +LL+ L + L LL LL + S PL L L V L+
Sbjct: 72 ALLLGLALLLLGLLLA--LLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPLLGELVVGLAF 129
Query: 226 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL---------------LSALLFVS 270
L +LL A +LL+ +F+ A L L L
Sbjct: 130 GLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRK 189
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
+ L LL A + L L +L LL +++ LL A + P + L
Sbjct: 190 RALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFL 249
Query: 331 LFVSLSA 337
L
Sbjct: 250 FIALLFG 256
Score = 29.4 bits (66), Expect = 9.2
Identities = 43/178 (24%), Positives = 60/178 (33%), Gaps = 20/178 (11%)
Query: 185 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL---SVLLSALLFVSLSA 241
ALL L +LL+ L + L LL LL + S PL L L V L+
Sbjct: 72 ALLLGLALLLLGLLLA--LLLGPLLLLLGLLGLLLGLLYSPPLRLKRRPLLGELVVGLAF 129
Query: 242 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL---------------LSALLFVS 286
L +LL A +LL+ +F+ A L L L
Sbjct: 130 GLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRK 189
Query: 287 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSCTPI 344
+ L LL A + L L +L LL +++ LL A + P
Sbjct: 190 RALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPART 247
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 34.7 bits (80), Expect = 0.31
Identities = 36/173 (20%), Positives = 58/173 (33%), Gaps = 23/173 (13%)
Query: 606 TPICLTECTPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALL---FVLLS 662
+ + L L+ LF L P + SL+ L+++R A + S
Sbjct: 8 QWVLGRPARRLLLALVFGALFALAFPPP--DWWWLAWFSLAPLLWLVRGAPTSWEGLAKS 65
Query: 663 APLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLF 722
LF L+ + L + L +LL+A L + LL
Sbjct: 66 GFLFGF-GFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALF----------LLLV 114
Query: 723 VLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSI 775
+L+ L+ +L L +V E RGW + P L Y+ S
Sbjct: 115 AVLTCRLWFAL------LVVPSAWVAA-EWLRGWSLTGFPWLLLGYSQWSPSP 160
>gnl|CDD|223701 COG0628, yhhT, Predicted permease, member of the PurR regulon
[General function prediction only].
Length = 355
Score = 34.1 bits (79), Expect = 0.33
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 213
L + L L +LL A+L+ L LL AL+ L PL L L A L V
Sbjct: 13 GLRILLLLLLLLLLLAILYF-FQPILLPLLLALVLAYLLNPLVRRLEKRGIPRLLAVLLV 71
Query: 214 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL-LFVSLSAPLSVLLSALLFVSLS 272
LL LL + VLL L+ SL + L+ L L A L+ LL +L +
Sbjct: 72 LLLILLLI-------VLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESLPLLGER 124
Query: 273 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
P+SV +S+ + L +LL LS +S+LL +L
Sbjct: 125 LPVSVDALLSALLSILQSILGSLLSLLSSLLSLIVSLLLVLVL 167
Score = 33.8 bits (78), Expect = 0.46
Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 9/175 (5%)
Query: 158 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 217
L L L L + L L +LL A+L+ L LL AL+ L PL L
Sbjct: 1 MLMRWLPRTLLLGLRILLLLLLLLLLLAILYF-FQPILLPLLLALVLAYLLNPLVRRLEK 59
Query: 218 LLF-VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 276
L+ L +LL LL V L LL + L L L L A L+
Sbjct: 60 RGIPRLLAVLLVLLLILLLIV-----LLGLLVIPSLIEQIQNLIKNLPGLD--LLQARLA 112
Query: 277 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 331
LL +L + P+SV +S+ + L +LL LS +S+LL +L
Sbjct: 113 KLLESLPLLGERLPVSVDALLSALLSILQSILGSLLSLLSSLLSLIVSLLLVLVL 167
Score = 31.5 bits (72), Expect = 2.8
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ + L LL AL+ L PL L L A L VLL LL +
Sbjct: 25 LLLAILYFFQPILLPLLLALVLAYLLNPLVRRLEKRGIPRLLAVLLVLLLILLLI----- 79
Query: 211 LSVLLSALLFVSLSAPLSVLLSAL-LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
VLL L+ SL + L+ L L A L+ LL +L + P+SV +
Sbjct: 80 --VLLGLLVIPSLIEQIQNLIKNLPGLDLLQARLAKLLESLPLLGERLPVSVDALLSALL 137
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALL 299
S+ + L +LL LS +S+LL +L
Sbjct: 138 SILQSILGSLLSLLSSLLSLIVSLLLVLVL 167
>gnl|CDD|217647 pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts
as a virulence factor. In Bordetella pertussis, brkB is
essential for resistance to complement-dependent killing
by serum. This family was originally predicted to be
ribonuclease BN, but this prediction has since been
shown to be incorrect.
Length = 255
Score = 34.1 bits (79), Expect = 0.33
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 24/183 (13%)
Query: 179 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL-----------LFVSLSAPL 227
V+ L + L +L +L S S + L AL L
Sbjct: 56 AEVIEDILQRLLEQGGLGLLGLGVLLWSASGGFAALRRALNRIYGVKEKRSFLRRRLLSL 115
Query: 228 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 287
+ L L + LS LSV L +LL + L A+L L LS+LL LLF L
Sbjct: 116 GLTLLLGLLLLLSLLLSVFLPSLLGFLILLLGLGLEIAVLLQLLRWLLSLLLLFLLFALL 175
Query: 288 ------------SAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVS 334
+A LL+A+L++ LS S+ LS + S L L+ LL++
Sbjct: 176 YRFLPNRKVRWRAALPGALLAAVLWLLLSYGFSLYLSNFANYNSTYGSLGALIVLLLWLY 235
Query: 335 LSA 337
LSA
Sbjct: 236 LSA 238
Score = 33.0 bits (76), Expect = 0.66
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 214
L + L L + LS LSV L +LL + L A+L L LS+L
Sbjct: 107 FLRRRLLSLGLTLLLGLLLLLSLLLSVFLPSLLGFLILLLGLGLEIAVLLQLLRWLLSLL 166
Query: 215 LSALLFVSL------------SAPLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSV 261
L LLF L +A LL+A+L++ LS S+ LS + S L
Sbjct: 167 LLFLLFALLYRFLPNRKVRWRAALPGALLAAVLWLLLSYGFSLYLSNFANYNSTYGSLGA 226
Query: 262 LLSALLFVSLSAPLSVLLSALL 283
L+ LL++ LSA L +LL A L
Sbjct: 227 LIVLLLWLYLSA-LILLLGAEL 247
Score = 30.7 bits (70), Expect = 3.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 643 VSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL-SALLFVSPSAPLFVLLSAPLFVLL 701
V R L + L L +LLS LSV L S L F+ L + ++ L +L
Sbjct: 101 VKEKRSFLRRRLLSLGLTLLLGLLLLLSLLLSVFLPSLLGFLILLLGLGLEIAVLLQLLR 160
Query: 702 SALLFVLLSAPLFVL 716
L +LL +L
Sbjct: 161 WLLSLLLLFLLFALL 175
>gnl|CDD|218119 pfam04506, Rft-1, Rft protein.
Length = 533
Score = 34.4 bits (79), Expect = 0.34
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 142 PVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 201
+ + + +S S+ S LLF +SA + + +F+SL + LL
Sbjct: 88 IIQTVINVVCVYIWYAWISTVDSISWSVLLFFPISAIIEPIAEPFIFISLVSEFVELLLE 147
Query: 202 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 248
F+ V L+ V S L +
Sbjct: 148 PHFI-------VGQGMLICVKRIFVESGAFMFPGIYHLELFVYAQYI 187
Score = 31.7 bits (72), Expect = 2.6
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 198 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLSVLLSALLFVSLS 256
L++ +L +++ L +S + ++ L +L S +LF+S A L+ L L +
Sbjct: 15 LIARILTFAINMYLIRRISPDVLGIVNVRLELLQSTILFLSREAIRLAELRIGSLPIDDD 74
Query: 257 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 316
+ L + ++V+ + + +S S+ S LLF +SA + + +F
Sbjct: 75 DEEEFINLLWLSPIIQTVINVVCVYIWYAWISTVDSISWSVLLFFPISAIIEPIAEPFIF 134
Query: 317 VSLSAPLSVLLSALLFVSLSAPLSC 341
+SL + LL F+ L C
Sbjct: 135 ISLVSEFVELLLEPHFIVGQGMLIC 159
Score = 31.3 bits (71), Expect = 3.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 666 FVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLF-VLRSALLFV 723
+ +S S+ S LLF SA + + +F+ L + LL P F V + L+ V
Sbjct: 102 YAWISTVDSISWSVLLFFPISAIIEPIAEPFIFISLVSEFVELLLEPHFIVGQGMLICV 160
Score = 31.0 bits (70), Expect = 4.3
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 214
L + ++V+ + + +S S+ S LLF +SA + + +F+SL + L
Sbjct: 85 LSPIIQTVINVVCVYIWYAWISTVDSISWSVLLFFPISAIIEPIAEPFIFISLVSEFVEL 144
Query: 215 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 264
L F+ V L+ V S L +
Sbjct: 145 LLEPHFI-------VGQGMLICVKRIFVESGAFMFPGIYHLELFVYAQYI 187
Score = 29.8 bits (67), Expect = 8.8
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 673 LSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
LS ++ ++ V + +S + S LLF +SA + + +F+ L +
Sbjct: 85 LSPIIQTVINVVCVYIWYAWISTVDSISWSVLLFFPISAIIEPIAEPFIFISLVSEFVEL 144
Query: 733 LSAPLF-VLRSALLFV 747
L P F V + L+ V
Sbjct: 145 LLEPHFIVGQGMLICV 160
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 34.7 bits (80), Expect = 0.35
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 636 LLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSV-LLSALLFVSPSAPLFVLLS 694
LL + VS AP + A L +L A + ++ +L + + P L LL
Sbjct: 9 LLGRAVIVSPMAPFGI---AFLAAVLLAKKGGDKAFFSALGVLLGAISIQPKHSLKYLLL 65
Query: 695 APLFVLLSALL------FVLLSAPLFVLRSA---LLFVLLSAPLFVSLSAPLFVLRSALL 745
+ +LLS +L + P+ V A +F L L L L ++ ++L
Sbjct: 66 VAVIILLSYVLKNLTDKKKTVVPPIVVFLEAAVYAIFGYLQNKLVTPLDFILSIVEASLS 125
Query: 746 FVL 748
FVL
Sbjct: 126 FVL 128
>gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown].
Length = 624
Score = 34.3 bits (79), Expect = 0.36
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS------ALLFVSLSAPLSVLLS 216
L L L+ ++ L +LL+ L + + LL A++ L A + ++
Sbjct: 313 LPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMA 372
Query: 217 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 276
L+ S S+P +S LSV L +LL + L L L +
Sbjct: 373 GLV-GSSSSP----------ISGIGILSVTLLSLLILILGQ-SGGLFIDPLMRKFLVAAT 420
Query: 277 VLLSALLFVSLSAPLS 292
+ ++ V+ A +S
Sbjct: 421 LFTAS--VVAAVAAIS 434
Score = 34.3 bits (79), Expect = 0.36
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS------ALLFVSLSAPLSVLLS 264
L L L+ ++ L +LL+ L + + LL A++ L A + ++
Sbjct: 313 LPPKLVLLVLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMA 372
Query: 265 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 324
L+ S S+P +S LSV L +LL + L L L +
Sbjct: 373 GLV-GSSSSP----------ISGIGILSVTLLSLLILILGQ-SGGLFIDPLMRKFLVAAT 420
Query: 325 VLLSALLFVSLSAPLS 340
+ ++ V+ A +S
Sbjct: 421 LFTAS--VVAAVAAIS 434
Score = 32.7 bits (75), Expect = 1.3
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVS 684
+ + L +LL+ L + + L ++ ++ + L A + ++ L+ S
Sbjct: 321 VLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAV--VIGFLVAAVCGYMAGLV-GS 377
Query: 685 PSAPLFVLLSAPLFVLLSALLFVLLSAPLFVL 716
S+P + L V L +LL ++L +
Sbjct: 378 SSSP--ISGIGILSVTLLSLLILILGQSGGLF 407
>gnl|CDD|216256 pfam01032, FecCD, FecCD transport family. This is a sub-family of
bacterial binding protein-dependent transport systems
family. This Pfam entry contains the inner components of
this multicomponent transport system.
Length = 311
Score = 34.0 bits (79), Expect = 0.36
Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
V ALL + + L+A + L+A L + L+ +PL ++L+ +++SA
Sbjct: 88 VLALLLFGGLSLFGLPLAAFIGALLAALLVLFLA--RRRGGLSPLRLILAG---IAVSAL 142
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLSAPLSVLLSALL-F 268
S L S LL + + L SLS A S +L L + + L +LL+ L
Sbjct: 143 FSALTSLLLL-LANPEALQSILFWLLGSLSGASWSDVLILLPLLLIGLLLLLLLARKLNL 201
Query: 269 VSLSAPLS---------VLLSALLFVSLSAPLSVLLS-ALLFVSLSAP--LSVLLSALLF 316
++L ++ V L LL +L +V L + FV L P +L+ A
Sbjct: 202 LALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVGLIVPHIARLLVGANHR 261
Query: 317 VSLSAPLSVLLSALLFVS 334
L PLS L+ ALL +
Sbjct: 262 RLL--PLSALIGALLLLL 277
Score = 31.3 bits (72), Expect = 2.6
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 19/181 (10%)
Query: 170 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 229
+L VS A L +L+ LLF LS + L+A + L+A L + L+ +PL +
Sbjct: 76 ILGVSSGAALGAVLALLLFGGLS-LFGLPLAAFIGALLAALLVLFLA--RRRGGLSPLRL 132
Query: 230 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLS 288
+L+ +++SA S L S LL + + L SLS A S +L L + +
Sbjct: 133 ILAG---IAVSALFSALTSLLLL-LANPEALQSILFWLLGSLSGASWSDVLILLPLLLIG 188
Query: 289 APLSVLLSALL-FVSLSAPLS---------VLLSALLFVSLSAPLSVLLS-ALLFVSLSA 337
L +LL+ L ++L ++ V L LL +L +V L + FV L
Sbjct: 189 LLLLLLLARKLNLLALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVGLIV 248
Query: 338 P 338
P
Sbjct: 249 P 249
>gnl|CDD|223742 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 33.4 bits (77), Expect = 0.39
Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 38/179 (21%)
Query: 621 LSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSAL 680
LS P FVL+ A L + ++ S+P + LF + +A + + LS +
Sbjct: 57 LSPPGFVLIIAGLAGVFFLSRKINKSSPTAL------------ILFFVYTALVGLTLSPI 104
Query: 681 L-FVSPSAPLFVLLSAPLFVLLSALLFVLLSA-------PLFVLRSAL---LFVLLSAPL 729
L + + + +A ++AL+F LS L L S L L L+ A L
Sbjct: 105 LLVYAAISGGDAIAAA---FGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASL 161
Query: 730 ---FVSLSAPLFVLR--SALLFVLL-----NERTRGWLMVDSPIPTLAYTLIYLSIVTI 778
F+ SA + L+F L R I A +L YL + +
Sbjct: 162 VNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKRMEGGERLAI-MGALSL-YLDFINL 218
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 32.8 bits (75), Expect = 0.43
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 6/158 (3%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 221
P LL ++L L LL ALL L + +L + + L LL +
Sbjct: 17 PPRAPWLPLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGL 76
Query: 222 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 281
L A L L++ L S ++ L + PL + L +SL +LL
Sbjct: 77 FLLALLLHLIAKLFGGDGSFKQTLSLVGYALL----PLILGGLIALLLSLLLGALLLLVG 132
Query: 282 LLFVSLSAPLSV--LLSALLFVSLSAPLSVLLSALLFV 317
LL + S L L +A A L LL LL +
Sbjct: 133 LLALIWSLYLLYLGLKAAHGLSKKKALLVALLLLLLLI 170
Score = 31.2 bits (71), Expect = 1.5
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 4/133 (3%)
Query: 194 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 253
P LL ++L L LL ALL L + +L + + L LL +
Sbjct: 17 PPRAPWLPLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGL 76
Query: 254 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 313
L A L L++ L S ++ L + PL + L +SL +LL
Sbjct: 77 FLLALLLHLIAKLFGGDGSFKQTLSLVGYALL----PLILGGLIALLLSLLLGALLLLVG 132
Query: 314 LLFVSLSAPLSVL 326
LL + S L L
Sbjct: 133 LLALIWSLYLLYL 145
Score = 30.5 bits (69), Expect = 3.3
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 4/128 (3%)
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
P LL ++L L LL ALL L + +L + + L LL +
Sbjct: 17 PPRAPWLPLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGL 76
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
L A L L++ L S ++ L + PL + L +SL +LL
Sbjct: 77 FLLALLLHLIAKLFGGDGSFKQTLSLVGYALL----PLILGGLIALLLSLLLGALLLLVG 132
Query: 330 LLFVSLSA 337
LL + S
Sbjct: 133 LLALIWSL 140
>gnl|CDD|235476 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 605
Score = 34.1 bits (79), Expect = 0.44
Identities = 60/213 (28%), Positives = 83/213 (38%), Gaps = 51/213 (23%)
Query: 150 PVSALLFVS-----LSAPL-SVLLSALLFVSLSAPLSV---LLSALLFVSL---SAPLSV 197
PVS L F++ LSAPL + L ++L A L+ LF L++
Sbjct: 390 PVSRLHFLTGIMSYLSAPLWLLFLLLGTALALQAALTEPEYFQPRQLFPVWPQWDPELAI 449
Query: 198 LLSALLFVSLSAP--LSVLLSALLFVSLSA---PLSVLLSALLFVSLSAPLSVLLSALLF 252
L A V L P L +LL L A L +LLS LL L SALL
Sbjct: 450 ALFAATMVLLFLPKLLGLLLVLLDPKRRRAFGGALRLLLSVLL--------ETLFSALL- 500
Query: 253 VSLSAPLSVLLSALLFVSL----------------SAPLSVLLSALLFVSLSAPLSVLLS 296
AP+ +L VS+ S P + +L ++L+
Sbjct: 501 ----APIRMLFHTRFVVSILLGRDVGWNSQRRDDGSTPWGEAFRRHGWHTLLG---LVLA 553
Query: 297 ALLFVSLSAPLSVLLSALLF-VSLSAPLSVLLS 328
A LS L + L+ +L + L+ PLSVL S
Sbjct: 554 AGAAW-LSPSLLLWLAPILLGLILAIPLSVLTS 585
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 166 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 225
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 226 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 260
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 182 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 241
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 242 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 276
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 198 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 257
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 258 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 292
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 214 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 273
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 274 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 308
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 230 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 289
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 290 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 324
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 33.9 bits (78), Expect = 0.48
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 246 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 305
+L +SL+ L L++ LLF V+ L+ LS LSVL A+L V++
Sbjct: 140 QFREVLLISLALQLFALVTPLLFQV------VIDKVLVHRGLST-LSVLALAMLAVAIFE 192
Query: 306 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSA-PLS 340
P L LF L++ + V L A L+ L PL
Sbjct: 193 PALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228
Score = 30.9 bits (70), Expect = 4.6
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 153 ALLFVSLSAPL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 209
AL +L PL V+ L+ LS LSVL A+L V++ P L LF L++
Sbjct: 150 ALQLFALVTPLLFQVVIDKVLVHRGLST-LSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208
Query: 210 PLSVLLSALLFVSLSA-PLS 228
+ V L A L+ L PL
Sbjct: 209 RIDVELGARLYRHLLGLPLG 228
>gnl|CDD|220361 pfam09721, Exosortase_EpsH, Transmembrane exosortase
(Exosortase_EpsH). Members of this family are
designated exosortase, analogous to sortase in cell wall
sorting mediated by LPXTG domains in Gram-positive
bacteria. The phylogenetic distribution of the proteins
in this entry is nearly perfectly correlated with the
distribution of the proteins having the PEP-CTERM anchor
motif, IPR013424. Members of this entry are integral
membrane proteins with eight predicted transmembrane
helices in common. Some members of this family have long
trailing sequences past the region described by this
model. This model does not include the region of the
first predicted transmembrane region. The best
characterized member is EpsH of Methylobacillus sp. 12S,
where it is part of a locus associated with biosynthesis
of the exopolysaccharide methanol-an.
Length = 254
Score = 33.4 bits (77), Expect = 0.49
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 621 LSAPLFVLLSAPLFVLLS-----APLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSV 675
L L +L P L ++++ LF R L L P LL L++
Sbjct: 1 LLLALLLLAYWPTLARGWLDYSHGLLILAIALWLFWRRRDELAKLPPRPSPGLL--LLAL 58
Query: 676 LLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSA 735
L L S L + L + +L LL +L L L L +L + P L
Sbjct: 59 ALLLYLLGRLSYVLLLALLSLPLLLAGLLLLLLGRRVLRALWFPLALLLFALPFPAFLIP 118
Query: 736 PL 737
L
Sbjct: 119 AL 120
>gnl|CDD|130022 TIGR00947, 2A73, putative bicarbonate transporter, IctB family.
This family of proteins is suggested to transport
inorganic carbon (HCO3-), based on the phenotype of a
mutant of IctB in Synechococcus sp. strain PCC 7942.
Bicarbonate uptake is used by many photosynthetic
organisms including cyanobacteria. These organisms are
able to concentrate CO2/HCO3- against a greater than
ten-fold concentration gradient. Cyanobacteria may have
several such carriers operating with different
efficiencies. Note that homology to various O-antigen
ligases, with possible implications for mutant cell
envelope structure, might allow alternatives to the
interpretation of IctB as a bicarbonate transport
protein [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 425
Score = 33.9 bits (78), Expect = 0.51
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 633 LFVLLSAPLFVSLSAPLFVLRSALLFVLLS---------APLFVLLSAPLSVLLSALLFV 683
+L+ AP + L + L++LL+ P+ +L+ + A
Sbjct: 27 ALLLVLAPFVSTTGLGLVLAACGALWLLLTLVDTPQKRLTPIHLLVLLYWGIAALATGLS 86
Query: 684 S-PSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
P+A L LL L++L+ AL LL P + R L+ V L L VS
Sbjct: 87 PVPAAALKGLLKLTLYLLVFALAARLLRNPRW--RDRLVTVYLLVSLLVS 134
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 33.6 bits (77), Expect = 0.53
Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 20/149 (13%)
Query: 164 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV-LLSALLFVS 222
S +++A LFV +L L +LS + S L F SL+A +V +LSAL VS
Sbjct: 282 SGIMTAALFV-------FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS 334
Query: 223 LS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS-----ALL-----FVSL 271
A +++ ALL VS +S +L A +F + L V LS AL +V+L
Sbjct: 335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL 394
Query: 272 S-APLSVLLSALLFVSLSAPLSVLLSALL 299
S + + + +V+L A ++ L+S +L
Sbjct: 395 SLKSIGMETAFFWYVTLMAVVAFLVSLML 423
Score = 33.2 bits (76), Expect = 0.68
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV-LLSALLFVS 270
S +++A LFV +L L +LS + S L F SL+A +V +LSAL VS
Sbjct: 282 SGIMTAALFV-------FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS 334
Query: 271 LS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 312
A +++ ALL VS +S +L A +F + L V LS
Sbjct: 335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLS 377
Score = 33.2 bits (76), Expect = 0.68
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 228 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV-LLSALLFVS 286
S +++A LFV +L L +LS + S L F SL+A +V +LSAL VS
Sbjct: 282 SGIMTAALFV-------FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS 334
Query: 287 LS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 328
A +++ ALL VS +S +L A +F + L V LS
Sbjct: 335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLS 377
Score = 32.5 bits (74), Expect = 1.4
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 244 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV-LLSALLFVS 302
S +++A LFV +L L +LS + S L F SL+A +V +LSAL VS
Sbjct: 282 SGIMTAALFV-------FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS 334
Query: 303 LS-APLSVLLSALLFVSLSAPLSVLLSALLF 332
A +++ ALL VS +S +L A +F
Sbjct: 335 SPYAAFGLVMCALLIVSFYTSISGILKAEMF 365
>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease subunit;
Provisional.
Length = 668
Score = 34.0 bits (79), Expect = 0.53
Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 81/269 (30%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
+S + L++LL L ++L+ + L + +L P + L LL
Sbjct: 3 RLMSRRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSR 62
Query: 209 AP---LSVL------LSALLF---------------VSLSAPLSVLLSALLFVSLSAPLS 244
P +++L L+ L V+ A L+++L+ L +L A S
Sbjct: 63 LPRLAIALLVGAALGLAGALLQQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALAS 122
Query: 245 V-------LLSALLFVSLSA-----PLSVLLS----ALLFVSLSAPLSVL----LSALLF 284
LL+A L +L+ PL ++L+ +L +L+ L + L L
Sbjct: 123 QLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTTLLLLFNEQYLQGLFL 182
Query: 285 -------------VSLSAPLSVLLSALLFVSLSAPLSVL-------------LSALLFVS 318
V P +L+ LL + L+ PL++L +S +
Sbjct: 183 WGAGSLAQNDWSGVQRLLPR-LLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAA 241
Query: 319 LSAPLSVLLSALL--------FVSLSAPL 339
L+ L+VLLSA + F+ L+AP
Sbjct: 242 LA--LAVLLSAAVVSAVGPIGFIGLAAPN 268
>gnl|CDD|224061 COG1138, CcmF, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones].
Length = 648
Score = 33.9 bits (78), Expect = 0.53
Identities = 46/212 (21%), Positives = 70/212 (33%), Gaps = 34/212 (16%)
Query: 636 LLSAPLFVSLS-APLFVLRSALL-----FVLLS------APLFVLLSAPLSVLLSALLF- 682
LL A L SLS F++RS +L F L + VLL VL +
Sbjct: 276 LLLAILAFSLSLLGTFLVRSGVLVSVHAFALDPARGVFLLIILVLLIGGSLVLFALRAPS 335
Query: 683 VSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLL-----------SAPLFV 731
A F LLS +LL +L + + + L+ L+ AP F
Sbjct: 336 ARLPAVGFALLSREGLLLLGNVLLLAALLIVLL---GTLYPLVLEALGLGSISVGAPFFN 392
Query: 732 SLSAPLFV-LRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYK 790
PL + L + L R D + L ++ L + T+G L
Sbjct: 393 VTFLPLMLPLLLLVGLGPLLVWGRD-DRFDLRVLLLTAYVVALGLATLGFHLGSPWLYVN 451
Query: 791 LTSILVPYNMLMCALNLYIAIELLVASTRLKY 822
L + + + L+A K+
Sbjct: 452 SALGLA-----LGKWLVLLLGIELLARAFSKF 478
Score = 30.0 bits (68), Expect = 7.8
Identities = 49/179 (27%), Positives = 64/179 (35%), Gaps = 27/179 (15%)
Query: 175 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 234
L A L+ LS L + VL+S F A LL ++ V L VL +
Sbjct: 277 LLAILAFSLS--LLGTFLVRSGVLVSVHAFALDPARGVFLL--IILVLLIGGSLVLFALR 332
Query: 235 LF-VSLSAPLSVLLS---ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 290
L A LLS LL ++ +LL+ALL V L ++L AL S+S
Sbjct: 333 APSARLPAVGFALLSREGLLLLGNV-----LLLAALLIVLLGTLYPLVLEALGLGSISV- 386
Query: 291 LSVLLSALLFVSLSAPL-SVLLSALLFVSLSA-------PLSVLLSALLFVSLSAPLSC 341
A F PL LL + L L VLL V+L
Sbjct: 387 -----GAPFFNVTFLPLMLPLLLLVGLGPLLVWGRDDRFDLRVLLLTAYVVALGLATLG 440
Score = 30.0 bits (68), Expect = 8.8
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLS--APLSVLLSALLFVSLSAPLSVLLSALLFVS 222
+LL+ALL V L ++L AL S+S AP + L + L L ++ L V
Sbjct: 358 LLLAALLIVLLGTLYPLVLEALGLGSISVGAPFFNVTFLPLMLPL---LLLVGLGPLLVW 414
Query: 223 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 279
L LL + A L L S L AL + LL
Sbjct: 415 GRDDRFDLRVLLLTAYVVALGLATLGFHLGSPWLYVNSALGLALGKWLVLLLGIELL 471
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 33.9 bits (78), Expect = 0.57
Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 33/162 (20%)
Query: 611 TECTPICLVLLSAPLFVLL-SAPLFV----LLSAPLFVSLSAPL-FVLRSALLFVLLSAP 664
+ T + L LL A F+LL + F+ + S L S S L V LL +LLS P
Sbjct: 8 PKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFP 67
Query: 665 LFVLLSAPLSVLLSAL--LFVS--------------------PSAPLFVLLSAPLFVLLS 702
+ A + L+SA F S+ L L VL+
Sbjct: 68 RLLKPLAGVLSLVSAAASYFAYFYGIIIDKNMLLNVFETNTAESSELLTLYFLLWLVLVG 127
Query: 703 ALLFVLL-----SAPLFVLRSALLFVLLSAPLFVSLSAPLFV 739
L +L+ LR ++ + + A
Sbjct: 128 LLPALLIVLVIIRYYRVWLRRLWARLVSILLSLLVILAFAAP 169
Score = 32.0 bits (73), Expect = 1.9
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 657 LFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLL--SAPLFVLLSALLFVLLSAPLF 714
+ + L P LS L + LL ++ + L V L S L S LL
Sbjct: 1 MNLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLA-------L 53
Query: 715 VLRSALLFVLLSAPLFVSLSAPLFVLRSALLF 746
V LL +LLS P + A + L SA
Sbjct: 54 VFAFLLLLLLLSFPRLLKPLAGVLSLVSAAAS 85
Score = 32.0 bits (73), Expect = 2.2
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 633 LFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLL--SAPLSVLLSALLFVSPSAPLF 690
+ + L P LS L + LL + + L V L S LS S LL
Sbjct: 1 MNLTLKRPKLTKLSLSLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLA-------- 52
Query: 691 VLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSA 727
V LL +LLS P + A + L+SA
Sbjct: 53 -------LVFAFLLLLLLLSFPRLLKPLAGVLSLVSA 82
>gnl|CDD|221405 pfam12069, DUF3549, Protein of unknown function (DUF3549). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are about 340 amino acids in length. This protein has a
conserved LDE sequence motif.
Length = 342
Score = 33.4 bits (77), Expect = 0.62
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 274 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 333
L L L V+L L+ L LL +AP LL+ALL SA L++ LL
Sbjct: 199 VLYALCQCLEHVTLPEKLAEALLELL-EQEAAPDLELLAALLRALSSASAHSLVAILLDA 257
Query: 334 SLSAPLSCTP 343
L++ P
Sbjct: 258 LLASQRLLDP 267
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction
only].
Length = 311
Score = 33.4 bits (77), Expect = 0.64
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 23/203 (11%)
Query: 153 ALLFVSL-SAPLSVLLSA-LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
ALLF S+ +A LS L L+ SL A L L L + + ++ + P
Sbjct: 47 ALLFNSIATADLSGLADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFP 106
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL----FVSLSAPLSVLLSAL 266
L + +SL + + + + + L LL + + LSVL L
Sbjct: 107 NIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLL 166
Query: 267 LFVSLSAPLSVLLSALLFVSLSAPLSVLL-------SALLFVSLSAPLS----------V 309
+ A + LL LL +SL APL + S L ++L L+ +
Sbjct: 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPI 226
Query: 310 LLSALLFVSLSAPLSVLLSALLF 332
+L AL L APL LL A L
Sbjct: 227 ILIALSLKLLLAPLVALLVAKLL 249
Score = 32.7 bits (75), Expect = 1.1
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 163 LSVLLSALLFVSL-SAPLSVLLSA-LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 220
+ V L ALLF S+ +A LS L L+ SL A L L L + +
Sbjct: 41 VYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFA 100
Query: 221 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL----FVSLSAPLS 276
++ + P L + +SL + + + + + L LL + + LS
Sbjct: 101 LASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLS 160
Query: 277 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 327
VL L + A + LL LL +SL APL + L S ++PL+++
Sbjct: 161 VLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVD--LLASAASPLALIA 209
Score = 29.6 bits (67), Expect = 9.4
Identities = 46/157 (29%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
V+ L+ +LL+ + + L VL+ L L+ A + LL L + L
Sbjct: 128 AVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISL 187
Query: 678 SALL--FVSPSAPLFVLLSAPLFVLLSALLFVLL--SAPLFVLRSALLFVLLSAPLFVSL 733
A L V A L+ L L +L F+ L S P +L AL LL APL L
Sbjct: 188 PAPLDTAVDLLASAASPLA--LIALGLSLAFLKLKGSKPPIIL-IALSLKLLLAPLVALL 244
Query: 734 SAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTL 770
A L L L VL+ L+ P AY L
Sbjct: 245 VAKLLGLSGLALQVLV-------LLSAMPTAVNAYVL 274
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 33.1 bits (76), Expect = 0.64
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
LLS + PL L + ++ +LR L F + + + L +S+LL
Sbjct: 140 RRLLSLFWTLGTLLPLLFALLLSVVGPIALQALLLRFGLPFFDVLVLILLRLRLLVSLLL 199
Query: 678 SALLFVS-----PSAPLFVLLSAPLFVLLSALLFVLLS 710
L F P+ + LL+A+LF L
Sbjct: 200 LTLGFFLLYRFLPNVRVLKWRDVLPGALLAAILFELGK 237
Score = 31.5 bits (72), Expect = 2.0
Identities = 41/179 (22%), Positives = 68/179 (37%), Gaps = 14/179 (7%)
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLF---VSLSAPLSVLLSALLFVSLSAPLSVLLSALL 219
LS+ L L+ + + +S L AL V LF +L + L L
Sbjct: 103 LSLGLVVALWTASNG-MSALRDALNKIWRVKPRRSFIRRRLLSLFWTLG--TLLPLLFAL 159
Query: 220 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 279
+S+ P+++ L F + VL+ L + +S L L LL+ L +
Sbjct: 160 LLSVVGPIALQALLLRFGLPFFDVLVLILLRLRLLVSLLLLTLGFFLLYRFLPNVRVLKW 219
Query: 280 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS-APLSVLLSALLFVSLSA 337
+L LL+A+LF LS S + L ++ LL++ +SA
Sbjct: 220 RDVL-------PGALLAAILFELGKYLFGYYLSNFANYSSTYGALGSVIILLLWLYISA 271
>gnl|CDD|148251 pfam06532, DUF1109, Protein of unknown function (DUF1109). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 204
Score = 32.6 bits (75), Expect = 0.67
Identities = 46/189 (24%), Positives = 68/189 (35%), Gaps = 25/189 (13%)
Query: 161 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 220
A L A L A ++LL L L + ++ L+ L + +AL+
Sbjct: 12 AVARRLALAALAG---AAAALLLMLALLGVRPDLAQALATPFFWLKLAFTLLLAAAALVA 68
Query: 221 VS-LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF----------V 269
+ LS P L L+AP+++L A L AP + LL
Sbjct: 69 LFRLSRPGGSRGRGWLL--LAAPVALLWLAALLELALAPPGARAALLLGHTWLVCLLAIP 126
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL-------LFVSLSAP 322
LS P L L + AP L+ + L+ + AL FV +
Sbjct: 127 LLSLPPLAAL--LWALRRGAPTRPALAGAAAGLAAGALAAVAYALHCPEDSPPFVGVWYL 184
Query: 323 LSVLLSALL 331
L +LL ALL
Sbjct: 185 LGILLPALL 193
Score = 31.4 bits (72), Expect = 1.9
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 635 VLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFV----SPSAP-- 688
L A + L L +R L L + ++ L+ L + +AL+ + P
Sbjct: 21 ALAGAAAALLLMLALLGVRPDLAQALATPFFWLKLAFTLLLAAAALVALFRLSRPGGSRG 80
Query: 689 -LFVLLSAPLFVLLSALLFVLLSAP------LFVLRSAL----LFVLLSAPLFVSLSAPL 737
++LL+AP+ +L A L L AP L + + L LLS P +L L
Sbjct: 81 RGWLLLAAPVALLWLAALLELALAPPGARAALLLGHTWLVCLLAIPLLSLPPLAAL---L 137
Query: 738 FVLR 741
+ LR
Sbjct: 138 WALR 141
>gnl|CDD|225873 COG3336, COG3336, Predicted membrane protein [Function unknown].
Length = 299
Score = 33.2 bits (76), Expect = 0.67
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAP----------LFVLRSALLFVLLSAPLFVLLSAPLS 674
L + L + + V L++L L+ + +P+ A S
Sbjct: 17 LLLGLLGIVLLYFYIAGRVRSRREGISWPLGRVILWLLGCVALYGAVGSPVRAYGHAMFS 76
Query: 675 VLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPL 729
+ ++ + + AP ++L AP L L L L L + LS P+
Sbjct: 77 LHMAEHMLLMMVAPPLLVLGAP-VTLALRALPPLGRGALAWLLVSRFTKFLSHPI 130
>gnl|CDD|223939 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N)
[Energy production and conversion].
Length = 475
Score = 33.4 bits (77), Expect = 0.71
Identities = 43/178 (24%), Positives = 67/178 (37%), Gaps = 23/178 (12%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 221
S L L + L+ VLL LF+ S L L+ L L+A S+L A
Sbjct: 1 DSSNLSLLLPEIILAITALVLLLVGLFIRRSRSLLAYLAVLG--LLAALASLLFIAYRGS 58
Query: 222 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA----------PLSVLLSAL--LFV 269
+ + V ALL + L L+AL+ +L + L + +
Sbjct: 59 AFAGAFIVDALALLMKIVV--LLASLAALILSLPYLERAGTFKGEFYALLLFATLGMIVM 116
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 327
+ + L +L L +SL+ +L+AL S +AL + L A S L
Sbjct: 117 ASANNLLLLFIGLELLSLA---LYVLAALRRDS----KRSSEAALKYFVLGALSSAFL 167
Score = 31.1 bits (71), Expect = 3.6
Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 28/207 (13%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 212
L + L+ VLL LF+ S L L+ L L+A S+L A + +
Sbjct: 8 LLPEIILAITALVLLLVGLFIRRSRSLLAYLAVLG--LLAALASLLFIAYRGSAFAGAFI 65
Query: 213 VLLSALLFVSLSAPLSVLLSALLFVSLSA----------PLSVLLSALLFVSLSAPLSVL 262
V ALL + L L+AL+ +L + L + +++ ++L
Sbjct: 66 VDALALLMKIVV--LLASLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLL 123
Query: 263 LSALLFVSLSAPLSVLL-----------SALLFVSLSAPLSVLLS--ALLFVSLSAPLSV 309
L + LS L VL +AL + L A S L L + LS
Sbjct: 124 LLFIGLELLSLALYVLAALRRDSKRSSEAALKYFVLGALSSAFLLYGIALVYGATGSLS- 182
Query: 310 LLSALLFVSLSAPLSVLLSALLFVSLS 336
L +++ LL L+F+
Sbjct: 183 LSGIAAYLNGGGEPLGLLLGLVFIIAG 209
Score = 30.7 bits (70), Expect = 4.8
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 619 VLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLS 678
+ L P +L VLL LF+ S L + L LL+A +L A +
Sbjct: 5 LSLLLPEIILA-ITALVLLLVGLFIRRSRSLLAYLAVLG--LLAALASLLFIAYRGSAFA 61
Query: 679 ALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLF 738
V A L + VLL++L ++LS P + LF +L +
Sbjct: 62 GAFIVDALALLMK-----IVVLLASLAALILSLPYLERAGTFKGEFYALLLFATLG--MI 114
Query: 739 VLRSALLFVLL 749
V+ SA +LL
Sbjct: 115 VMASANNLLLL 125
>gnl|CDD|225715 COG3174, COG3174, Predicted membrane protein [Function unknown].
Length = 371
Score = 33.1 bits (76), Expect = 0.76
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 23/155 (14%)
Query: 648 PLFVLRSALLFVLLSAPLFVL-------LSAPLSVLLSALLFVSPSAPLFVLLSAPLFVL 700
P R L V+L A + L ++L+ L+ S+ A +
Sbjct: 124 PWGGPREVWLMVVLIAAISFAGYIAVRILGGRRGLILTGLIGGFVSSTAVTATFAARVRI 183
Query: 701 LSALLF-----VLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRG 755
+L LL+A + ++R+ LL L+ L L+ P L + + G
Sbjct: 184 GEDVLPPEAAAALLAAAVMLIRNLLLIALVGPSLAYLLALPPAAFLIVFLGIAVLAALSG 243
Query: 756 W--------LMVDSPI---PTLAYTLIYLSIVTIG 779
W + V +P P LA+ L++ +I+
Sbjct: 244 WASSSEGGDVGVRNPFSLLPALAFGLLFSAILYAS 278
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 33.1 bits (76), Expect = 0.76
Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 11/191 (5%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 211
L +++ L LL L L L L LL L+ L L V +
Sbjct: 154 WLFLILAILGLLLALLLLFLLRLLL--LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAA 211
Query: 212 SVLLSALLFVSLSAPLSVLLSALL--------FVSLSAPLSVLLSALLFVSLSAPLSVLL 263
L LF ++L L + + L+ L LL ++ S L ++
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271
Query: 264 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAP 322
LL L LL+ ++ SL L LL+ LL +
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 323 LSVLLSALLFV 333
L+ A L +
Sbjct: 332 GVFLILAALAL 342
>gnl|CDD|223856 COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational
modification, protein turnover, chaperones].
Length = 220
Score = 32.7 bits (75), Expect = 0.80
Identities = 47/174 (27%), Positives = 59/174 (33%), Gaps = 16/174 (9%)
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 222
L LS L SL A SVLL++LLFV L A +FV L S L + L
Sbjct: 33 LPAYLSYLAGGSLGARKSVLLASLLFV--------LGFATVFVLLGIGASGLGAFLPLNR 84
Query: 223 --LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL------FVSLSAP 274
L +LL L + L LL L L A L
Sbjct: 85 LYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCI 144
Query: 275 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 328
+L S L + + + + L +L L LL ALL S L
Sbjct: 145 GPILGSILALAASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLR 198
Score = 32.3 bits (74), Expect = 0.92
Identities = 46/170 (27%), Positives = 58/170 (34%), Gaps = 16/170 (9%)
Query: 179 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 238
L LS L SL A SVLL++LLFV L A +FV L S L + L
Sbjct: 33 LPAYLSYLAGGSLGARKSVLLASLLFV--------LGFATVFVLLGIGASGLGAFLPLNR 84
Query: 239 --LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL------FVSLSAP 290
L +LL L + L LL L L A L
Sbjct: 85 LYLRYIAGILLILLGLLFLGVLRLPLLLRFARFQLKGKSVTALGAFLLGLLFALGWTPCI 144
Query: 291 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS 340
+L S L + + + + L +L L LL ALL S
Sbjct: 145 GPILGSILALAASTGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFS 194
>gnl|CDD|119324 cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of
Escherichia coli LivH and related proteins. LivH is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivH forms a heterodimer with another TM, LivM, to
generate the transmembrane pore. LivM is not included in
this subgroup. The LIV-1/LS transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine.
Length = 272
Score = 32.8 bits (76), Expect = 0.84
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 649 LFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSP--SAPLFVLL--SAPLFVLLSAL 704
+L + L L+ L +L++A L VLL L+ P APL LL L +LL L
Sbjct: 41 YTLLVALGLPFWLALLLALLVAALLGVLLERLVL-RPLRGAPLLTLLITFGGLLILLQGL 99
Query: 705 LFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLN---ERTR 754
L + P L + + + + + +L L RTR
Sbjct: 100 LLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTR 152
Score = 30.1 bits (69), Expect = 6.4
Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL-SAPLSVLLSALLFVSLSAPL 211
+ ++ L L+ LL + ++A L VLL L+ L APL LL L
Sbjct: 39 VAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLITFGG------L 92
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
+LL LL + P L +++ L ++++ L L L
Sbjct: 93 LILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFL 148
Score = 29.7 bits (68), Expect = 8.7
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Query: 233 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL-SAPLSVLLSALLFVSLSAPL 291
+ ++ L L+ LL + ++A L VLL L+ L APL LL + +
Sbjct: 39 VAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLITFGGLLILLQG 98
Query: 292 SVLLSALLFVSLSAPLSVLLSALLFVSLSAP--LSVLLSALLFVSLSAPLSCTPI 344
+L+ PL L V++ + ++ +L +L L T +
Sbjct: 99 LLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRL 153
>gnl|CDD|219143 pfam06699, PIG-F, GPI biosynthesis protein family Pig-F. PIG-F is
involved in glycosylphosphatidylinositol (GPI) anchor
biosynthesis.
Length = 190
Score = 32.3 bits (74), Expect = 0.85
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 656 LLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLL------------SAPLFVLLSA 703
LLF+ L L S P S LL +L + P +++ L + PL ++S
Sbjct: 8 LLFLFLFRFSAGLTSDPYSTLLKSLPVLIPLQVVYLYLQLNPATKSGNKKNVPLLAVISL 67
Query: 704 LLFVLLSAPLFVLRSALLFVLLSAPLFVSL 733
LL +LLS PL +L VL APL L
Sbjct: 68 LLSLLLSVPLL----FVLLVLFGAPLLEHL 93
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 32.9 bits (76), Expect = 0.85
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 629 LSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAP 688
L L LL A L S + + S L +LL+ LF+L+ A + S
Sbjct: 4 LLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREM 63
Query: 689 LFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVL 748
L +L A L+ L+ LL+ F+L+ F L L+ L+ L +L +L +L
Sbjct: 64 LLRILLA---WTLTFLILALLA---FLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLL 117
Query: 749 LNE-RTRGW 756
L R +G+
Sbjct: 118 LRRLRRKGF 126
Score = 31.0 bits (71), Expect = 3.7
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 613 CTPICLVLLSAPL--FVLLSAPLFVLLSAPLFVS-LSAPLFVLRSALL----FVLLSAPL 665
+ L+LL+ L + + + + L + L+ LF+L AL + L
Sbjct: 1 LLDLLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRL 60
Query: 666 FVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLL 725
+L L L + + F+L F L LL+ LL+ L +L +L +LL
Sbjct: 61 REMLLRILLAWTLTFLIL--ALLAFLLKYGTEFSRLWLLLWFLLALALLLLGRLILRLLL 118
Query: 726 S 726
Sbjct: 119 R 119
>gnl|CDD|219375 pfam07331, TctB, Tripartite tricarboxylate transporter TctB family.
This family consists of several hypothetical bacterial
proteins of around 150 residues in length. This family
was formerly known as DUF1468.
Length = 141
Score = 31.7 bits (73), Expect = 0.86
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 643 VSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLS 702
+ L VL + LLF LL PL +++ L + ++AL L LL A + +
Sbjct: 70 AAWRRVLLVLGALLLFALLLEPLGFVIATFLLLFIAALAL-GKRRWLRALLIAVVLSAVV 128
Query: 703 ALLFVLL 709
LLFV
Sbjct: 129 YLLFVYG 135
Score = 28.6 bits (65), Expect = 8.4
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 615 PICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLF----VLRSALLFVLLSAPLFVLLS 670
+ LVL + LF LL PL +++ L + ++A LR+ L+ V+LSA +++L
Sbjct: 74 RVLLVLGALLLFALLLEPLGFVIATFLLLFIAALALGKRRWLRALLIAVVLSAVVYLLFV 133
Query: 671 APLSVLL 677
L + L
Sbjct: 134 YGLGLPL 140
>gnl|CDD|219117 pfam06638, Strabismus, Strabismus protein. This family consists of
several strabismus (STB) or Van Gogh-like (VANGL)
proteins 1 and 2. The exact function of this family is
unknown. It is thought, however that STB1 gene and STB2
may be potent tumour suppressor gene candidates.
Length = 507
Score = 33.2 bits (76), Expect = 0.88
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 33/107 (30%)
Query: 625 LFVLLSAPLFVLLSAPLFVSLSAPLFVLRSAL---------LFVLLSAPLFVLLSAPLSV 675
L ++ F++L P R L L + L+ L +LL A
Sbjct: 104 LLAFVTPLAFIVL----------PQVGWRDRLEPCGTACEGLLISLAFKLLILLIA---- 149
Query: 676 LLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLF 722
AL P A + P + ALL VL+ L S LF
Sbjct: 150 -SWALFLRPPRADM------PRIFVFRALLLVLV---FLFLFSYWLF 186
Score = 29.7 bits (67), Expect = 9.9
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 689 LFVLLSAPLFVLLSALLFVLLSAP-------LFVLRSALLFVLLSAPLFVSLSAP----- 736
L ++ F++L + + P L + + L +LL A + L P
Sbjct: 104 LLAFVTPLAFIVLPQVGWRDRLEPCGTACEGLLISLAFKLLILLIASWALFLRPPRADMP 163
Query: 737 -LFVLRSALLFVLL 749
+FV R+ LL ++
Sbjct: 164 RIFVFRALLLVLVF 177
>gnl|CDD|220443 pfam09852, DUF2079, Predicted membrane protein (DUF2079). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 451
Score = 32.7 bits (75), Expect = 1.1
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 23/163 (14%)
Query: 618 LVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLL 677
++ L APL+ L +PL +LL L ++L A L + A LS L++L+
Sbjct: 46 ILYLLAPLYALFPSPLTLLLVQALLLALGALP------LYRLARQA----GLSERLALLI 95
Query: 678 SALLFVSPSAPLFVLLSAPLF---VLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLS 734
+ L + P + LF + A+ +LL+ + R LF+LL L +
Sbjct: 96 ALLYLLYP-----AVFGPNLFDFHPEVLAVPLLLLALLALLRRKWWLFLLLLLLLLLVKE 150
Query: 735 APLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVT 777
V+ L++LL R R W + L L + +VT
Sbjct: 151 DLGLVVAGLGLWLLLRRRKRRWG-----LALLLLGLAWFLLVT 188
>gnl|CDD|218514 pfam05231, MASE1, MASE1. Predicted integral membrane sensory
domain found in histidine kinases, diguanylate cyclases
and other bacterial signaling proteins. This entry also
includes members of the 8 transmembrane UhpB type
(8TMR-UT) domain family.
Length = 298
Score = 32.4 bits (74), Expect = 1.1
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAPLSVLLSALL 219
P + L+ALL +LL +L LS LL ALL + ++A ++L ALL
Sbjct: 34 PTGLRLAALLLFGRRYWPGILLGDVLASLFLGLLSGLGLLLALLILLVNALEALLAVALL 93
Query: 220 FVSLSAPLSV-LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 278
L + LL L F+ +A ++ LL A++ ++L L +L A S
Sbjct: 94 RRLLPGRHRLQLLFWLRFLLAAAIIAALLLAIIGLALLLLLGLLPLAPFAESWLTWWLGS 153
Query: 279 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 338
+ +L + APL +LL L PL L L LL L+ L
Sbjct: 154 ATGVLVL---APLLLLLRRYLRQRHRLPLWPELLLAPVALKLLHLFWLLLLLILSLLLQL 210
Query: 339 LSCTPI 344
L +
Sbjct: 211 LLPPEL 216
Score = 29.7 bits (67), Expect = 7.8
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
+ L F+ +A ++ LL A++ ++L L +L A S + +L + AP
Sbjct: 106 LFWLRFLLAAAIIAALLLAIIGLALLLLLGLLPLAPFAESWLTWWLGSATGVLVL---AP 162
Query: 211 LSVLLSALLFVS---------LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 261
L +LL L L AP+++ L L ++ L LS+LL LL L+ L
Sbjct: 163 LLLLLRRYLRQRHRLPLWPELLLAPVALKLLHLFWLLLLLILSLLLQLLLPPELNYFLGY 222
Query: 262 LLSALLFVSLSA----PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 317
LL L + +A L+ LL L + + LF+
Sbjct: 223 LL--LPPLLWAAFRFGWQGAALATLLNAVLLILFTASGGGPFLQDSGTQSQQAIELQLFL 280
Query: 318 SLSAPLSVLLSALL 331
++ A +LL A +
Sbjct: 281 AVQALTGLLLGAAI 294
>gnl|CDD|225217 COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor
[Posttranslational modification, protein turnover,
chaperones].
Length = 274
Score = 32.0 bits (73), Expect = 1.3
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 15/183 (8%)
Query: 162 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA--LLFVSLSAPL----SVLL 215
PL V++ L L A LS+ L++ + L A L +L A L L
Sbjct: 68 PLWVVVRTFL---LGAFLSLFAVMLIYHFVLVLLWPSSLALLFLGSALLAGLVEEPLKAL 124
Query: 216 SALLFVSLSAPLSVLLSALLFVSLS----APLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
+ +LFV S PL LL LL+ + + A LL L S+ + V L L
Sbjct: 125 AVVLFVLRSLPLDELLDGLLYGAAAGLGFAATENLLYLLTGASIGFGVEVAFERALLAIL 184
Query: 272 S-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL-SALLFVSLSAPLSVLLSA 329
A LS ++ L ++ + ++ L+ L L + + ++L
Sbjct: 185 GHALLSAIVGYYLGLAAFGQDKAKGIRIKWLLLALLLHFLWNTPYTSILGLLVKVIVLIL 244
Query: 330 LLF 332
L+F
Sbjct: 245 LIF 247
>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 390
Score = 32.3 bits (74), Expect = 1.4
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 29/202 (14%)
Query: 635 VLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLF--VL 692
L L + L + R L+ +LL++ L LS P VLL+ L + P+ L
Sbjct: 176 AFLLIALLLRLDESKKITRRLLILLLLASVLLA-LSKPPYVLLALLALLIPARKFSRRRL 234
Query: 693 LSAPLFVLLSAL-----LFVLLSAPLFVLRSAL------LFVLLSAPL-FVSLSAPLFVL 740
+ A L L + L + SAPL + L LL+ PL +V L +
Sbjct: 235 IGAILLAALFVIGIALFLRTVQSAPLIGGGATNVDFSAQLGYLLAHPLDYVRLFIRNVLS 294
Query: 741 RSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTI----GPRLMRDRKPYKLTSILV 796
++L GWL D+P+P+ Y I + + + + R K+ S+L+
Sbjct: 295 LPSVLAGQFISGGLGWL--DTPLPSWLY-FIAIVALILLAFAALGAISKRLKRKILSLLL 351
Query: 797 PYNMLMCALNLYIAIELLVAST 818
L + I I L + +
Sbjct: 352 -------VLVIVILIPLALYLS 366
Score = 31.2 bits (71), Expect = 3.0
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 654 SALLFVLLSAPLFVLLSAPLSVLLSALLF---------VSPSAPLFVLLSAPLFVLLSAL 704
+ LL+ L L ++LL L +SP +F L F+L++ L
Sbjct: 128 NLLLYAALVYFAIKLAPFGKALLLLVALLPMALFQAASLSPDGMIFALA----FLLIALL 183
Query: 705 LFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNER 752
L + S + LL +LL A + ++LS P +VL + L ++ +
Sbjct: 184 LRLDESKKI---TRRLLILLLLASVLLALSKPPYVLLALLALLIPARK 228
Score = 31.2 bits (71), Expect = 3.5
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSA-PLFVLRSALLFVLLSA---PLFVLLSA 671
+ L+LL++ L L P +L L + L A+L L LF+
Sbjct: 197 LILLLLASVLLALSKPPYVLLALLALLIPARKFSRRRLIGAILLAALFVIGIALFLRTVQ 256
Query: 672 PLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFV 731
++ V SA L LL+ PL + + + L + + ++
Sbjct: 257 SAPLIGGGATNVDFSAQLGYLLAHPL-----DYVRLFIRNVLSLPSVLAGQFISGGLGWL 311
Query: 732 SLSAPLFVLRSALLFVLL 749
P ++ A++ ++L
Sbjct: 312 DTPLPSWLYFIAIVALIL 329
>gnl|CDD|223909 COG0839, NuoJ, NADH:ubiquinone oxidoreductase subunit 6 (chain J)
[Energy production and conversion].
Length = 166
Score = 31.5 bits (72), Expect = 1.4
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 634 FVLLSAPLFVSLSAPLFVLRSALLFVLLS-APLFVLLSAPLSVLLSALLFVSPSAPLFVL 692
+ ++ L V L+ L LLS A LF LL A ++ L++V LF+
Sbjct: 13 VLAIAFALGVVLAKNPVYSALYLALTLLSIAALFFLLGAEFLGVVQVLVYVGAVMVLFLF 72
Query: 693 LSAPLFVLLSALLF-VLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFV 739
+ L V + + L PL L +L LL + V A +
Sbjct: 73 VVMMLNVDGAEVREEGLRGKPLAALVGLVLLALLIISVAVVSGAFVPP 120
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family. Members of this
family are integral membrane proteins, that are found to
increase tolerance to divalent metal ions such as
cadmium, zinc, and cobalt. These proteins are thought to
be efflux pumps that remove these ions from cells.
Length = 273
Score = 31.9 bits (73), Expect = 1.5
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 194 PLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 252
PL+ L+ +LL + + + +L ++ +S + + +SL + LL AL
Sbjct: 59 PLAALIVSLLLLGVG--VFILYESIERLISPEEIEPGGILLVALISL---VVNLLLALYL 113
Query: 253 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 312
+ SAL +L A + VL S + + L +L+ S+L++
Sbjct: 114 RRAGRKIGKKSSALRADALHALVDVLGSLAVLIGL-----LLILLTGLPIADPLASLLIA 168
Query: 313 ALLFVSLSAPLSVLLSALL 331
L+ + L +L +L
Sbjct: 169 LLILYT---GLRLLKESLS 184
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 32.3 bits (74), Expect = 1.8
Identities = 43/190 (22%), Positives = 57/190 (30%), Gaps = 41/190 (21%)
Query: 628 LLSAPLFVLLSAPLF-VSL--------SAPLFVLRSALLFVL---------LSAPLFVLL 669
LL+A L +L SL + LF + L F+L S L
Sbjct: 127 LLAAFLLAVLPGQFLSRSLFGFVDHHIAEVLFSTLAVLAFILALRVAREHKPSLRDLDTL 186
Query: 670 --SAPLSVL----LSALLFVSPSAPLFVLLSAPLFVLLSA------------LLFVLLSA 711
+VL L L P A LF + +F L+ L V
Sbjct: 187 KKPLAYAVLAGIALGLYLLTWPGAVLFAGI-VGVFTLVQFILDLFRGRSPEYLAIVGAVT 245
Query: 712 PLFVLRSALLFVLLSAPLFVSLSA--PLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYT 769
L F S PL +L AL VLL +R W D +P Y
Sbjct: 246 FAVAAVLVLPFGFKLGFSATYYSLFQPLALLGVALGAVLLAGLSRFWERKD--LPRYYYP 303
Query: 770 LIYLSIVTIG 779
+ +G
Sbjct: 304 AAVAGLAALG 313
>gnl|CDD|219354 pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family
contains a number of eukaryotic etoposide-induced 2.4
(EI24) proteins approximately 350 residues long as well
as bacterial CysZ proteins (formerly known as DUF540).
In cells treated with the cytotoxic drug etoposide, EI24
is induced by p53. It has been suggested to play an
important role in negative cell growth control.
Length = 205
Score = 31.4 bits (72), Expect = 1.9
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL---FVSLSAPLSVLLSALLFVSLSAP 210
V L L++LL A L L + L LL ALL ++ + L +L+ LL + L
Sbjct: 14 RRLVLLPLLLNLLLFAGLLYFLFSLLGPLLDALLSLLWLGWLSWLLWILAVLLLLVLLWF 73
Query: 211 LSVLLSALLFVSLSAPLSV-----LLSALLFVSLSAPLS-VLLSALLFVSLSAPLSVLLS 264
L V++++L+ P L +L L L +L + L +LL
Sbjct: 74 LFVVVASLIAAPFWTPDLAEKVEKRHYPDLEPALGGSLPRSLADSLKKLLLFLLFLLLLL 133
Query: 265 ALLFVS-LSAPLSVLLSALLF 284
L F+ + L+ +L LL
Sbjct: 134 PLYFIPVVGLVLAPVLWFLLN 154
Score = 29.9 bits (68), Expect = 5.7
Identities = 40/141 (28%), Positives = 56/141 (39%), Gaps = 24/141 (17%)
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 270
L +LL+ LLF L L LL LL LS LS LL L+VLL +L
Sbjct: 19 LPLLLNLLLFAGLLYFLFSLLGPLLDALLSLLWLGWLSWLL-----WILAVLLLLVLLWF 73
Query: 271 LSAPLSVLLSAL-----------------LFVSLSAPLS-VLLSALLFVSLSAPLSVLLS 312
L ++ L++A L +L L L +L + L +LL
Sbjct: 74 LFVVVASLIAAPFWTPDLAEKVEKRHYPDLEPALGGSLPRSLADSLKKLLLFLLFLLLLL 133
Query: 313 ALLFVS-LSAPLSVLLSALLF 332
L F+ + L+ +L LL
Sbjct: 134 PLYFIPVVGLVLAPVLWFLLN 154
Score = 29.5 bits (67), Expect = 6.5
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 22/150 (14%)
Query: 619 VLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLS 678
+LL+ LF L L PL +L + L++ + L +L+ L ++L L V+++
Sbjct: 21 LLLNLLLFAGLLY-FLFSLLGPLLDALLSLLWLGWLSWLLWILAVLLLLVLLWFLFVVVA 79
Query: 679 ALLFVSPSAPLFV----------LLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAP 728
+L+ P L A L +L L LF+L LL L P
Sbjct: 80 SLIAAPFWTPDLAEKVEKRHYPDLEPALGGSLPRSLADSLKKLLLFLLFLLLLLPLYFIP 139
Query: 729 LFVSLSAPLFVLRSALLFVLLNERTRGWLM 758
+ + AP +L+ LLN WL+
Sbjct: 140 VVGLVLAP-------VLWFLLN----AWLL 158
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug
and toxic compound extrusion (MATE)-like proteins.
Escherichia coli MurJ (MviN) has been identified as
essential for murein biosynthesis. It has been suggested
that MurJ functions as the peptidoglycan lipid II
flippase which is involved in translocation of
lipid-anchored peptidoglycan precursors across the
cytoplasmic membrane, though results obtained in
Bacillus subtilis seem to indicate that its MurJ
homologs are not essential for growth. Some MviN family
members (e.g. in Mycobacterium tuberculosis) possess an
extended C-terminal region that contains an
intracellular pseudo-kinase domain and an extracellular
domain resembling carbohydrate-binding proteins.
Proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are often
responsible for multidrug resistance (MDR).
Length = 420
Score = 32.0 bits (74), Expect = 1.9
Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSV 675
+ LVLL L +L APL V L AP F S F L AL ++ LF+ LSA
Sbjct: 81 LLLVLLLLTLLGILFAPLLVKLLAPGF---SGDKFELAVALTRIMFPYLLFISLSA---- 133
Query: 676 LLSALL-----FVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLF 714
LL +L F +P+ AP+ + L + +LL APLF
Sbjct: 134 LLGGILNAHGRFFAPAL-------APVLLNLVIIAGLLLLAPLF 170
>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLSVLLSAL--LFVSL 207
L+ V+L+ L++LL L SL + +L + + A +S L + ++
Sbjct: 7 LLLVLVALA--LALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFIILKAV 64
Query: 208 SAPLSVLLSALLF---VSLSAPLSVLLSALLFVSLS 240
V L + S L L + + S
Sbjct: 65 LTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGAS 100
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 184 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLSVLLSAL--LFVSL 239
L+ V+L+ L++LL L SL + +L + + A +S L + ++
Sbjct: 7 LLLVLVALA--LALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFIILKAV 64
Query: 240 SAPLSVLLSALLF---VSLSAPLSVLLSALLFVSLS 272
V L + S L L + + S
Sbjct: 65 LTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGAS 100
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 216 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLSVLLSAL--LFVSL 271
L+ V+L+ L++LL L SL + +L + + A +S L + ++
Sbjct: 7 LLLVLVALA--LALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFIILKAV 64
Query: 272 SAPLSVLLSALLF---VSLSAPLSVLLSALLFVSLS 304
V L + S L L + + S
Sbjct: 65 LTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGAS 100
Score = 31.9 bits (73), Expect = 2.1
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 248 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS--LSAPLSVLLSAL--LFVSL 303
L+ V+L+ L++LL L SL + +L + + A +S L + ++
Sbjct: 7 LLLVLVALA--LALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFIILKAV 64
Query: 304 SAPLSVLLSALLF---VSLSAPLSVLLSALLFVSLS 336
V L + S L L + + S
Sbjct: 65 LTSALVSLLFFSTRTDLPRSVVLVYWLLLFVLIGAS 100
Score = 29.9 bits (68), Expect = 9.7
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 680 LLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFV 739
L ++ + V L+ L + + A L + +LF L A S+S +
Sbjct: 1 ALILTDLLLVLVALALALLLRDELSASLWSGAQLLTICVFILFGLYRAVWRASVSDLFII 60
Query: 740 LRSALLFVLLNERTRGWLMVDSPIPTLAYTL-IYLSIVTIGP-----RLMRDRKP 788
L++ L L++ + +P + L V IG R +RD
Sbjct: 61 LKAVLTSALVSLLF---FSTRTDLPRSVVLVYWLLLFVLIGASRLLFRALRDALQ 112
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 31.3 bits (71), Expect = 2.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 653 RSALLFVLLSAPLFVLLSAPLSVLLSAL 680
R ALL LL+ P +LL P S L AL
Sbjct: 142 RVALLRALLAQPKALLLDEPFSRLDVAL 169
>gnl|CDD|233197 TIGR00937, 2A51, chromate transporter, chromate ion transporter
(CHR) family. Members of this family probably act as
chromate transporters, and are found in Pseudomonas
aeruginosa, Alcaligenes eutrophus, Vibrio cholerae,
Bacillus subtilis, cyanobacteria and archaea. The
protein reduces chromate accumulation and is essential
for chromate resistance. Cutoffs for this model have now
been lowered, compared to a previous version, giving the
model a scope more similar to that of pfam02417. Members
of the original, more narrowly defined family score
above 500.00 bits [Transport and binding proteins,
Anions].
Length = 368
Score = 31.6 bits (72), Expect = 2.3
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 623 APLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFV------LLSAPLFVLLSAPLSVL 676
A + + L + L VL P F L +R+ L V LL A L +
Sbjct: 278 ATVAIFLPSFLLVLGVLPYFKKLGKNPI-IRAFLDGVNAGVVGLLVAATIDLARTSAVDI 336
Query: 677 LSALLFVSPSAPL--FVLLSAPLFVLLSALL 705
+ L+FVS A L F L + VLL+AL
Sbjct: 337 PTLLVFVSLFAALLKFKKLPEWVVVLLAALA 367
>gnl|CDD|226645 COG4177, LivM, ABC-type branched-chain amino acid transport system,
permease component [Amino acid transport and
metabolism].
Length = 314
Score = 31.4 bits (72), Expect = 2.3
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 627 VLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLS-------- 678
+LL L +LL APL +SL L +L L++ +L+ L +++ + LLS
Sbjct: 7 LLLILALVLLLIAPLLLSLPFYLNLLTLILIYAILALGLNLVVG--YAGLLSLGHAAFFG 64
Query: 679 ------ALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLL 725
ALL L L+ L L++ALL +LL P LR L ++
Sbjct: 65 LGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALRLRGDYLAIVT 117
>gnl|CDD|221263 pfam11847, DUF3367, Domain of unknown function (DUF3367). This
domain is functionally uncharacterized. This domain is
found in bacteria and archaea. This presumed domain is
typically between 667 to 694 amino acids in length.
Length = 677
Score = 31.6 bits (72), Expect = 2.5
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 631 APLFVLLSAPLFVSLSAPLFVL----RSALLFVLLSAPLFVL----LSAPLSVLLSALLF 682
P F+L L P +V + LL V + + + +P S +L+A+ +
Sbjct: 59 GPFFLLGDL-----LGLPDWVAQRLWWALLLTVAFWGVVRLARALGIGSPPSRVLAAVAY 113
Query: 683 V-SP---------SAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
SP S+ P +VLL L+ L S SAL L+ V+
Sbjct: 114 ALSPRVLTTLGAISSEALPYALLP-WVLLP-LIRGLRSPRRAAALSALAVALMGG---VN 168
Query: 733 LSAPLFVLRSALLFVLLNERTRGWL 757
+A L L ALL++L + R R W
Sbjct: 169 ATATLAALLPALLWLLCHARGRRWW 193
>gnl|CDD|216066 pfam00695, vMSA, Major surface antigen from hepadnavirus.
Length = 364
Score = 31.5 bits (71), Expect = 2.5
Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 3/124 (2%)
Query: 103 IYLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAP 162
+ + L C I + T C T TP P C CT + + P
Sbjct: 239 LLVLLDYQGMLPVCPLIPGSTTTSTCKTCTTPAQGNSMFPSCC--CTKPTDGNCTCIPIP 296
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL-FV 221
S L+ SA S L + V S +S+ + LL + LLS L F+
Sbjct: 297 SSWAFGKYLWEWASARFSWLSLLVPSVQWSVGVSLTVWLLLIWMTWSWGPQLLSILTPFI 356
Query: 222 SLSA 225
LSA
Sbjct: 357 PLSA 360
>gnl|CDD|237900 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease;
Provisional.
Length = 356
Score = 31.4 bits (72), Expect = 2.5
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 627 VLLSAPLFVLLSAPLFVSLSAPL-FV--LRS----------ALLFVLLSAPLFVLLSAPL 673
+LS + L + V LS + FV LR A L+ LLS P + + P+
Sbjct: 12 TILSTIMLTLF---MLVGLSGIIKFVDQLRKVGQGSYDALGAGLYTLLSVPKDIEIFFPM 68
Query: 674 SVLLSALL 681
+ LL AL+
Sbjct: 69 AALLGALI 76
>gnl|CDD|225903 COG3368, COG3368, Predicted permease [General function prediction
only].
Length = 465
Score = 31.6 bits (72), Expect = 2.6
Identities = 34/181 (18%), Positives = 73/181 (40%), Gaps = 17/181 (9%)
Query: 155 LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL 214
L V L PL +++ + ++ S P +L A L ++ S+ +F+ L
Sbjct: 283 LLVLLIMPLFIMMELVYSIAKSFP---ILYAALVTTIIVFSSITSI--MFLVLEGNGISF 337
Query: 215 LSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 274
L +L LS ++ LL +S L + + F++ + +L
Sbjct: 338 LRSL---PLSKRWFLISKGLLIAVISIALLLTVLIKAFINNINSFLLFFPLVL-----YF 389
Query: 275 LSVLLSALLFVSLSAP----LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
L L ++ +S ++ + + L ++V++ F SLS P+S++++ +
Sbjct: 390 LVSSLFSMRRLSEKINDADTPNLGSFGGIVILLVNFIAVIVGKAPFFSLSLPVSLIITVI 449
Query: 331 L 331
Sbjct: 450 G 450
Score = 30.5 bits (69), Expect = 4.9
Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 8/197 (4%)
Query: 626 FVLLSAPLFV--LLSAPLFVSLSAPL-FVLRSALLFVLLSAPLFVLLSAPLSVLLSALLF 682
F+L F L+ F+ +L +F + L +S + +L L +
Sbjct: 31 FLLFILMTFAPSFLAHRAFIDDGVSFALILLVLFIFSNIFTSLLFAISFQSNHVLEPLRY 90
Query: 683 VSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRS 742
+ V+ + S+ LF LL + + + + LL L+ L+ L
Sbjct: 91 LPLDLSGKVMAVSFFIDTGSSSLFALLPS-IVLFLGNIYIGLLGL-LWSILAILLGYSLG 148
Query: 743 ALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRKPYKLTSILVPYNML- 801
LLFV R RG + + + LI+L V + Y LT I PY+ +
Sbjct: 149 FLLFVKFGGRIRGGRSLSKNLFRIFGILIFLVFV-FLIYGIIALNVYLLTPIFEPYDYVF 207
Query: 802 -MCALNLYIAIELLVAS 817
+ +++Y + + S
Sbjct: 208 PIFNISIYFPAKGFILS 224
>gnl|CDD|226644 COG4176, ProW, ABC-type proline/glycine betaine transport system,
permease component [Amino acid transport and
metabolism].
Length = 290
Score = 31.4 bits (72), Expect = 2.6
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 687 APLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLF 746
PLF +S PL LL L +LL+ P +L +L V L A L +F L LL
Sbjct: 29 GPLFDAISNPLEFLLDGLENLLLAVPPLLL---ILIVALLAWFASGLGLAIFTLLGLLLI 85
Query: 747 VLLN 750
L
Sbjct: 86 GNLG 89
>gnl|CDD|217631 pfam03595, C4dic_mal_tran, C4-dicarboxylate transporter/malic acid
transport protein. This family of transporters have ten
alpha helical transmembrane segments. The structure of a
bacterial homologue of SLAC1 shows it to have a trimeric
arrangement. The pore is composed of five helices with a
conserved phe residue involved in gating. One homologue,
Mae1 from the yeast Schizosaccharomyces pombe, functions
as a malate uptake transporter; another, Ssu1 from
Saccharomyces cerevisiae and other fungi including
Aspergillus fumigatus, is characterized as a sulphite
efflux pump; and TehA from Escherichia coli is
identified as a tellurite resistance protein by virtue
of its association in the tehA/tehB operon. Many
homologues are incorrectly annotated as tellurite
resistance/dicarboxylate transporter (TDT) proteins.
Length = 314
Score = 31.4 bits (72), Expect = 2.7
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 9/188 (4%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 209
PV F + L L++ LL + L+ +L+ + L ++L+ + SL +
Sbjct: 71 PVRGSFFGTFPMALLTLINGLLLYGWAP----ALAYVLWW-IGVALHLVLAIYIVFSLFS 125
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF- 268
L + L + ++++A+ L+ L L L L ++L L+
Sbjct: 126 GKRFKLEHVTPAWLLPVVGIIVAAVTGALLAPAGPTLELGYLLFGLGLLLYLVLLPLVLY 185
Query: 269 -VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLL 327
+ L LF+ L P S+ A L + +A + L L + L L +
Sbjct: 186 RLLFHKLPPAALRPTLFILL-GPPSLGALAYLLLGNNAQILGGLGDLFALLLWG-LGLFW 243
Query: 328 SALLFVSL 335
L + L
Sbjct: 244 FFLALLLL 251
>gnl|CDD|222495 pfam14012, DUF4229, Protein of unknown function (DUF4229). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
95 and 122 amino acids in length.
Length = 65
Score = 28.7 bits (65), Expect = 2.7
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 680 LLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLF 722
LFV +A + +LL L VL++ALL ++++ PL S LLF
Sbjct: 10 GLFVVLTA-VILLLGVLLGVLVAALLALVVALPL----SYLLF 47
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 31.4 bits (72), Expect = 2.8
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 151 VSALLFVSLSAP-------LSVLLSALLFVSLSAPLSVLL--SALLFVSLSAPLSVLLSA 201
+ LL V++ L +L LL + P +LL + + L A L V+
Sbjct: 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVF-- 68
Query: 202 LLF-----VSLSAPLSVLLSA---LLFVSLSAPLSV-LLSALLFVSLSAPLSVLLSALLF 252
LLF L V S + V L+AP + LL L + LS ++ L A L
Sbjct: 69 LLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA 128
Query: 253 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 312
+S +A + +L L + + ++L AL+F ++A L + + L S + +L
Sbjct: 129 LSSTAIVLKILMELGLLK-TREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILG 187
Query: 313 ALLFVSLSAPLSVLLSALLF 332
LL + L +LL L
Sbjct: 188 LLLAILAFLALLLLLGRYLL 207
Score = 31.1 bits (71), Expect = 3.0
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 159 LSAPLSVLLSALLFVSLSA--PLSVLLSALLFVSLSAPLSVLL--SALLFVSLSAPLSVL 214
L L +LL A++ L L +L LL + P +LL + + L A L V+
Sbjct: 8 LLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVV 67
Query: 215 LSALLF-----VSLSAPLSVLLSA---LLFVSLSAPLSV-LLSALLFVSLSAPLSVLLSA 265
LLF L V S + V L+AP + LL L + LS ++ L A
Sbjct: 68 F--LLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGA 125
Query: 266 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 325
L +S +A + +L L + + ++L AL+F ++A L + + L S +
Sbjct: 126 ALALSSTAIVLKILMELGLLK-TREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGF 184
Query: 326 LLSALLFVSL 335
+L LL +
Sbjct: 185 ILGLLLAILA 194
>gnl|CDD|181853 PRK09433, thiP, thiamine transporter membrane protein; Reviewed.
Length = 525
Score = 31.3 bits (72), Expect = 2.9
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 655 ALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLF 714
A ++ LL+ L AL +P + L L F A L
Sbjct: 9 AAALLVA----LALLA------LLALWLHAPGGDWDAVWQDS--YLWHVLRFSFWQAFL- 55
Query: 715 VLRSALLFVLLSAPLFVSLSAPLFVLRSALL 745
SALL VL + PL +L F R LL
Sbjct: 56 ---SALLSVLPAIPLARALYRRRFPGRGLLL 83
>gnl|CDD|224905 COG1994, SpoIVFB, Zn-dependent proteases [General function
prediction only].
Length = 230
Score = 30.8 bits (70), Expect = 2.9
Identities = 36/156 (23%), Positives = 51/156 (32%), Gaps = 29/156 (18%)
Query: 618 LVLLSAPLFVLLSAPLF--VLLSAPLFVSLSAPLFVLRS-----------------ALLF 658
+L + L + L F L++ L +A + + LL
Sbjct: 16 FLLAAFALLLGLIVHEFAHGLVAYSLGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLLL 75
Query: 659 VLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPL------FVLLSALLFVLLSAP 712
LL P+ V + + PL L PL + L AL L +
Sbjct: 76 ALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPLTNIALAVLGLLALSLFLYHSV 135
Query: 713 LFVLRSALLFVLLSAPLFVSLSAPLF----VLRSAL 744
LF +AL V L LF L P VLR+ L
Sbjct: 136 LFAFLAALALVNLVLALFNLLPIPPLDGGRVLRALL 171
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 31.6 bits (72), Expect = 3.1
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 145 LTECTPVSALLFVSLSAPLSVLLS-ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 203
+ + S L +S S+L LLF+SL L + +S+LLS +
Sbjct: 204 IYDIKGWSLLTIISRLLGFSILWILGLLFLSLLF--FRRFGVLFSLLFFLMISILLSLIS 261
Query: 204 FVSLS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 250
+ LS L+ L+ L S L + + + + + L+ L
Sbjct: 262 LLLLSRLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLAQNLYFY 309
Score = 30.8 bits (70), Expect = 5.1
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 195 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 254
L ++S LL S+ L +L +LLF VL S L F +S+LLS + +
Sbjct: 212 LLTIISRLLGFSILWILGLLFLSLLFFRR---FGVLFSLLFF----LMISILLSLISLLL 264
Query: 255 LS-APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 298
LS L+ L+ L S L + + + + + L+ L
Sbjct: 265 LSRLSLANLIKGKLPFKRSMFLLTVCKLVAVLIVVSSLAQNLYFY 309
>gnl|CDD|223724 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 31.2 bits (71), Expect = 3.2
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 22/144 (15%)
Query: 692 LLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNE 751
LL P+ + L A +LL L L++ LL A + LS F+ + L
Sbjct: 4 LLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVGGPVGGLGGW 63
Query: 752 RTRG--WLMVDSPIPTLAYTLIYLSIVTI-----GPRLMRDRKPYKLTSILVPYNMLMCA 804
L D P A L+ +++V + MR K L +L+
Sbjct: 64 LAPFGIVLAAD---PLSAIFLLIIALVGLLASLYSIGYMRHEKERAYYYFL--LLLLLAG 118
Query: 805 L----------NLYIAIELLVAST 818
+ NLY+ E++ S+
Sbjct: 119 MLGAFLTGDLFNLYVFFEIMTLSS 142
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 31.3 bits (71), Expect = 3.2
Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 8/132 (6%)
Query: 620 LLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSAL-LFVLLSAPLFVLLSAPLSVLLS 678
+A F LL L + ++ L + L+ F AP +L+
Sbjct: 368 FGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAFYLAPAVAILA 427
Query: 679 ALLFVSPSAPLFV-------LLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFV 731
+ L + + L L+ + LS + L+ + A ++
Sbjct: 428 GIGLGQLLEILKLGRVEKANGSAISLVASLADVAGFALSVKVLSAVPVLIVLASLALPWL 487
Query: 732 SLSAPLFVLRSA 743
S + A
Sbjct: 488 RNSTNPSDVTGA 499
Score = 31.3 bits (71), Expect = 3.4
Identities = 47/234 (20%), Positives = 82/234 (35%), Gaps = 46/234 (19%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
T L+ S+ P+S+ +ALLF ++ L+V+ LL + + LL+ALL
Sbjct: 95 TAALGLILGSIF-PVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAP 153
Query: 209 APLS--------------VLLSALLF--------------VSLSAPLSVLLSALL----- 235
LS +L LF + A L+ L LL
Sbjct: 154 GYLSRTVAGFYDTDMFELLLPLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWG 213
Query: 236 ----FVSLSAPLSVLLSALLFVSLSAPLSV--------LLSALLFVSLSAPLSVLLSALL 283
+++ +++L L F+ + L +LL + S +
Sbjct: 214 GYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLTLLSLLILPPLLGFSGYYYSGF 273
Query: 284 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 337
V L + +L L + + L + L+ ++LS L + L L A
Sbjct: 274 SVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLALILGGLLLFLELLRA 327
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 31.0 bits (71), Expect = 3.3
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 55/176 (31%)
Query: 656 LLFVLLSAPLFVLLSAP----------LSVLLSALLFVSPSAPLFVLLSAPLFVL----- 700
++ + A L P LS++L AL + P F LL+ PLF+L
Sbjct: 20 IIGAGIYAFGLNLFLIPNALASGGVTGLSLILLALFGIPPFGLTFFLLNIPLFILGYKKI 79
Query: 701 ------LSALLFVLLSAPLFVLRSALLFVLLSA-PLFVSLSAPLF-------VLR----- 741
LS ++ VLL LF+ L VL PL +L L V R
Sbjct: 80 GKRFTLLSTIIGVLLL-SLFLWLFQRLPVLTIIDPLLAALFGGLLLGIGLGLVFRHGGST 138
Query: 742 --SALLFVLLNERTRGW------LMVD-----------SPIPTLAYTLIYLSIVTI 778
+ +L ++LN++ G L+VD P+P YTL+ L + +
Sbjct: 139 GGTDILALILNKKF-GISVGKILLLVDGFILLIAALVFGPLPNALYTLLSLFVASK 193
>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many eukaryotic
proteins are anchored to the cell surface via
glycosylphosphatidylinositol (GPI), which is
posttranslationally attached to the carboxyl-terminus by
GPI transamidase. The mammalian GPI transamidase is a
complex of at least four subunits, GPI8, GAA1, PIG-S,
and PIG-T. PIG-U is thought to represent a fifth subunit
in this complex and may be involved in the recognition
of either the GPI attachment signal or the lipid portion
of GPI.
Length = 373
Score = 31.1 bits (71), Expect = 3.4
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 15/179 (8%)
Query: 149 TPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
P+ L L+ + +L++LL++ LL ALL +++ S LL
Sbjct: 59 PPLLLALLSFLNKKSAPILTSLLYILAD-----LLIALLLYAIAKSYQKTTSELLKSPRD 113
Query: 209 APLSVLLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
S LL A ++ L PL++L L + L +LLS L V + LS + AL
Sbjct: 114 LRSSPLLIAAIY--LFNPLTILSCVSLSTTVFTN-LLLLLSLLSAVKGNRLLSAISLALA 170
Query: 268 ------FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 320
+ L PL +LL S + + L+ + L LL ++ S
Sbjct: 171 SYLSLYPLLLLPPLLLLLYIRFSKSSKSSSKLSKFLLILLLFLLTLLALLLLSFLITGS 229
Score = 31.1 bits (71), Expect = 3.5
Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 17/174 (9%)
Query: 177 APLSV-LLSALLFVSLSAPLSVL------LSALLFVSLSAPLSVLLSALLFVSLSAPLSV 229
PL + LLS L S S+L L ALL +++ S LL S
Sbjct: 59 PPLLLALLSFLNKKSAPILTSLLYILADLLIALLLYAIAKSYQKTTSELLKSPRDLRSSP 118
Query: 230 LLSALLFVSLSAPLSVLLSALL-FVSLSAPLSVLLSALLFVSLSAPLSVLLSALL----- 283
LL A ++ L PL++L L + L +LLS L V + LS + AL
Sbjct: 119 LLIAAIY--LFNPLTILSCVSLSTTVFTN-LLLLLSLLSAVKGNRLLSAISLALASYLSL 175
Query: 284 -FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 336
+ L PL +LL S + + L+ + L LL ++ S
Sbjct: 176 YPLLLLPPLLLLLYIRFSKSSKSSSKLSKFLLILLLFLLTLLALLLLSFLITGS 229
>gnl|CDD|236559 PRK09548, PRK09548, PTS system ascorbate-specific transporter
subunits IICB; Provisional.
Length = 602
Score = 31.3 bits (71), Expect = 3.4
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 1002 VNGIKSGCDFPLWM---QYLLVF-----------YMITFIVLFGNFYAKAYIHKVFKIHK 1047
+ I G F WM + L F F++L + K + K
Sbjct: 409 IANISQGTQFNGWMGMADWALGFPPILQGLVGSKSAFFFVLLALALVYMIFASKQLRA-K 467
Query: 1048 EKEAK---KSKDEIQNNNNCPEVTNENDK 1073
E A K+ D++ N EV N K
Sbjct: 468 EAAAAAGGKTVDQLDGYNLDEEVINAVQK 496
>gnl|CDD|224376 COG1459, PulF, Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 397
Score = 31.0 bits (71), Expect = 3.5
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 648 PLFVLRSALL--FVLLS------APLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFV 699
PL +L AL+ LL A +F L A L L LL +S + L + +
Sbjct: 166 PLVLLVVALVVVLFLLIFVVPQFAEIFESLGAELPALTQFLLALSDFLREWGWLLLLIII 225
Query: 700 LLSALLFVLLSAPLFVLRSALLFVLLSAPLF 730
+++ +LL P R L +LL PLF
Sbjct: 226 IIAIGYLLLLRKPAG--RRRLDRLLLRLPLF 254
>gnl|CDD|238538 cd01118, ArsB_permease, Anion permease ArsB. These permeases have
been shown to export arsenate and antimonite in
eubacteria and archaea. A typical ArsB permease
contains 8-13 transmembrane helices and can function
either independently as a chemiosmotic transporter or as
a channel-forming subunit of an ATP-driven anion pump
(ArsAB). The ArsAB complex is similar in many ways to
ATP-binding cassette transporters, which have two groups
of six transmembrane-spanning helical segments and two
nucleotide-binding domains. The ArsB proteins belong to
the ArsB/NhaD superfamily of permeases that translocate
sodium, arsenate, sulfate, and organic anions across
biological membranes in all three kingdoms of life.
Length = 416
Score = 31.1 bits (71), Expect = 3.5
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 39/181 (21%)
Query: 621 LSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSAL 680
+ PL L+ L VLL F L + S + VL LL A ++ L
Sbjct: 216 IKDPLLFGLAWTLLVLLVVSAFGV--DILLIPPSFIAGVLALI---FLLLARRGGAINPL 270
Query: 681 LFVSPSAPLFVLLSAPLFVLLSAL--------------LFVLLSAPLFVLRSALLFVLLS 726
+ + +L S L+V++ L V +L LL LS
Sbjct: 271 KVLKEAPWGVLLFSLGLYVVVFGLKNAGLTAILADLLNWLVSQGLLAAILGVGLLAAFLS 330
Query: 727 -------APLFVSLSAPLFVLRSALLFVLLNERTRGWLMVD-----SPIPTLAYTLIYLS 774
A L +L+ AL++ L + VD +PI +LA TL++L
Sbjct: 331 NVMNNLPAVLIGALALAAGHAPEALVYANL-------IGVDLGPKLTPIGSLA-TLLWLH 382
Query: 775 I 775
+
Sbjct: 383 V 383
>gnl|CDD|234343 TIGR03753, blh_monoox, beta-carotene 15,15'-monooxygenase, Brp/Blh
family. This integral membrane protein family includes
Brp (bacterio-opsin related protein) and Blh (Brp-like
protein). Bacteriorhodopsin is a light-driven proton
pump with a covalently bound retinal cofactor that
appears to be derived beta-carotene. Blh has been shown
to cleave beta-carotene to product two all-trans retinal
molecules. Mammalian enzymes with similar enzymatic
function are not multiple membrane spanning proteins and
are not homologous.
Length = 259
Score = 30.7 bits (70), Expect = 3.6
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 7/158 (4%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
+LL L A + L+ L + + +L + ++L + L S
Sbjct: 98 ILLPLLFHPEEVADIFSALTGLFALFVPQLRLILGAIWGLLTL---GLLGLGLKRRPRRS 154
Query: 225 APLSVLLSALLFVSLSAPLSVLLS-ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 283
L LL L A L L++ L F + V + + LL
Sbjct: 155 WRLDAGELLLLLA-LFALLPPLVAFGLYFCLWHSLRHVA-RIVRVLDGGRASRSLLRFAR 212
Query: 284 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 321
+ ++ +++L L++ L PL LL AL+F+ L+A
Sbjct: 213 WAAILTLATLILLLGLYLLLPDPLESLL-ALIFIGLAA 249
Score = 30.7 bits (70), Expect = 3.6
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 7/158 (4%)
Query: 181 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 240
+LL L A + L+ L + + +L + ++L + L S
Sbjct: 98 ILLPLLFHPEEVADIFSALTGLFALFVPQLRLILGAIWGLLTL---GLLGLGLKRRPRRS 154
Query: 241 APLSVLLSALLFVSLSAPLSVLLS-ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 299
L LL L A L L++ L F + V + + LL
Sbjct: 155 WRLDAGELLLLLA-LFALLPPLVAFGLYFCLWHSLRHVA-RIVRVLDGGRASRSLLRFAR 212
Query: 300 FVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 337
+ ++ +++L L++ L PL LL AL+F+ L+A
Sbjct: 213 WAAILTLATLILLLGLYLLLPDPLESLL-ALIFIGLAA 249
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes [Protein fate, Protein and peptide
secretion and trafficking, Signal transduction,
Two-component systems].
Length = 679
Score = 31.2 bits (71), Expect = 3.8
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 22/147 (14%)
Query: 615 PICLVLLSAPLFVLLSAPLFVLLS-APLFVSLSAPLFVLRSALLFVL-LSAPLFVLLSAP 672
+CL L + LFV F L + A LF L ++ R V L PL + +SA
Sbjct: 164 FLCLGLGA--LFVFD----FYLYADALLFRRLDTDVWPARG---LVAALVVPL-IAVSAA 213
Query: 673 LSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVS 732
+ S + VS SA L + L + ++ + LR +
Sbjct: 214 RNPDWSVRIAVSREM---AFHSATLLG--AGLYLLAMAGAGYYLR----YFGGEWGDAFQ 264
Query: 733 LSAPLFVLRSALLFVLLNERTRGWLMV 759
L+ LF L +L + R L V
Sbjct: 265 LAF-LFAAGLLLAVLLFSGTLRARLRV 290
>gnl|CDD|225677 COG3135, BenE, Uncharacterized protein involved in benzoate
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 402
Score = 30.8 bits (70), Expect = 4.0
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 141 TPVCLTECTPVSALLFVSL---SAPLSV---LLSALLFV--SLSAPLSVLLSALLFVSLS 192
PV TP +ALL SL S +V +++ L + L+ PL+ L+ +
Sbjct: 79 VPVLTAWSTPGAALLVASLGGLSFAEAVGAFIVTGALIILCGLTGPLTRLMRII------ 132
Query: 193 APLSV---LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 249
P S+ +L+ +L L + L V L ++L+ LL + +V+ +
Sbjct: 133 -PPSLAAAMLAGILLRFGLKAFKALPTQPLLV-----LPMVLAYLLARVFAPRYAVIAAL 186
Query: 250 LLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSALLFVSLSAPLSVLLSALLFVSLSAP- 306
++ V ++A L L +AL+ + +S P V S +SL+ PL ++ S + P
Sbjct: 187 VVGVLVAALLGDLHTALVALEISTPTWVTPEFSFAAMLSLALPLFLVT----MASQNLPG 242
Query: 307 LSVLLSALLFVSLSAPLSVLLSAL-LFVSLSAPLSCTPICLT 347
++VL +A P S L+ A L LSAP + L
Sbjct: 243 IAVLKAA----GYQPPPSPLIVATGLASLLSAPFGGHTVNLA 280
>gnl|CDD|234397 TIGR03920, T7SS_EccD, type VII secretion integral membrane protein
EccD. Members of this family are EccD, a component of
actinobacterial type VII secretion systems (T7SS) with
ten to eleven predicted transmembrane helix regions
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 431
Score = 30.8 bits (70), Expect = 4.1
Identities = 41/207 (19%), Positives = 79/207 (38%), Gaps = 13/207 (6%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSA 209
A+L + L+ + +A++ V++ L+ + L + + L+ L V S +
Sbjct: 209 ALAVLLLRLTGRGLAVFTAVVTVAVILALAAAVGMLWQTPVPGIAAGLILLGLAVLSAAP 268
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALLFVSLSAPLSVLLSALLF 268
LS LL+ L L +P L A S++ + L L A +++L+A
Sbjct: 269 RLSALLAGLPLPPLPSPGEDLDVADALESMTDLTARARRADALLTGLVAAGALVLAAGAL 328
Query: 269 VSLSAPLSVLLSALLFVSLSAPLSVLLS----------ALLFVSLSAPLSVLLSALLFVS 318
L L+A +L + AL+ + + ++L+SA
Sbjct: 329 ALAVPGTGSRWLGLALALLTAVALLLRARRYASAWCAWALIVAAAAVATALLVSAARGAP 388
Query: 319 LSAPLSVLLSALLF-VSLSAPLSCTPI 344
A L++ + L V+ A +P
Sbjct: 389 SGAWLALAVLVLALAVAALAAGWISPA 415
Score = 30.0 bits (68), Expect = 8.1
Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 14/197 (7%)
Query: 141 TPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 200
T L T V + + A +L ++A ++L L +S + LS LL+
Sbjct: 218 TGRGLAVFTAVVTVAVILALAAAVGMLWQTPVPGIAA--GLILLGLAVLSAAPRLSALLA 275
Query: 201 ALLFVSLSAPLSVLLSALLFVSLSAPL-SVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 259
L L +P L A S++ + L L A +++L+A
Sbjct: 276 GLPLPPLPSPGEDLDVADALESMTDLTARARRADALLTGLVAAGALVLAAGALALAVPGT 335
Query: 260 SVLLSALLFVSLSAPLSVLLS----------ALLFVSLSAPLSVLLSALLFVSLSAPLSV 309
L L+A +L + AL+ + + ++L+SA A L++
Sbjct: 336 GSRWLGLALALLTAVALLLRARRYASAWCAWALIVAAAAVATALLVSAARGAPSGAWLAL 395
Query: 310 LLSALLF-VSLSAPLSV 325
+ L V+ A +
Sbjct: 396 AVLVLALAVAALAAGWI 412
>gnl|CDD|224033 COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism].
Length = 274
Score = 30.6 bits (70), Expect = 4.1
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 152 SALLFVSLSAPLSV--LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS-----ALLF 204
+ L V+L L + LL A +F L+A L L + + ++ S L+
Sbjct: 50 AVLPGVALGFLLGINPLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGIVFSSGLALGLVL 109
Query: 205 VSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL--------- 255
+SL V L LF + L+V S LL +++ L +LL L + L
Sbjct: 110 LSLVPSSRVDLMHYLFGDI---LAVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEF 166
Query: 256 --SAPLSVLLSALLFVSLSAPLSVLLS-----ALLFVSL------------SAPLSVLLS 296
L+V L L + L A L+++ + ALL +L + +L+
Sbjct: 167 ARVLGLNVRLLHYLLLVLLA-LTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLII 225
Query: 297 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 333
A+L LS+ L + LS L + S P VL++ALLF+
Sbjct: 226 AVLIGLLSSVLGLYLSYYLDLP-SGPAIVLIAALLFL 261
>gnl|CDD|226713 COG4262, COG4262, Predicted spermidine synthase with an N-terminal
membrane domain [General function prediction only].
Length = 508
Score = 30.9 bits (70), Expect = 4.5
Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 11/149 (7%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF-----VSLSAPLSVLLSALLFV 205
V L + L +S LLF SAP ++L AL V PL + +
Sbjct: 76 VDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQA 135
Query: 206 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAPLSVLLS 264
S +L+ L A LL L + L + L+ L ++ + LL
Sbjct: 136 KAKDLGSRVLT---LDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVVTLFLLR 192
Query: 265 ALLFVSLSAPLSVLLSALLFVSLSAPLSV 293
+L LSA L ++ + A V
Sbjct: 193 HVL--GLSAFLRGAMALRAAMVALATGLV 219
Score = 30.9 bits (70), Expect = 4.6
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 161 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF-----VSLSAPLSVLL 215
A L+ + L + L +S LLF SAP ++L AL V PL + +
Sbjct: 70 AALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVGAEIPLLMRM 129
Query: 216 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-SLSAPLSVLLSALLFVSLSAP 274
S +L+ L A LL L + L + L+ L ++ +
Sbjct: 130 LQRRQAKAKDLGSRVLT---LDYLGALAGGLLWPFLLLPRLGLVRTAALAGLCNLAAAVV 186
Query: 275 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSV 309
LL +L LSA L ++ + A V
Sbjct: 187 TLFLLRHVL--GLSAFLRGAMALRAAMVALATGLV 219
>gnl|CDD|232788 TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family.
The seed members for this model are a paralogous family
of Mycobacterium tuberculosis. Nearly all proteins
scoring above the noise cutoff are from high-GC
Gram-positive organisms. The members of this paralogous
family of efflux proteins are all found in operons with
ATP-binding chain partners. They are related to a
putative daunorubicin resistance efflux protein of
Streptomyces peucetius. This model represents a branch
of a larger superfamily that also includes NodJ, a part
of the NodIJ pair of nodulation-triggering signal efflux
proteins. The members of this branch may all act in
antibiotic resistance.
Length = 232
Score = 30.2 bits (68), Expect = 4.5
Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 13/208 (6%)
Query: 137 LTECTPVCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL--LFVSLSAP 194
+ + T F+ + L+ + +A +++ AL L +
Sbjct: 19 MVGLNLLPGGSVTHNRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPR 78
Query: 195 LSVLLSALLFVSLSAPLSVLLSALLFVSL-----SAPLSVLLSALLFVSLSAPLSVLLSA 249
L +L L V L L+ ++ L L+ L + ++L L L
Sbjct: 79 LGILAGRSLAVVARVFLQTLILLVIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGL 138
Query: 250 LLFVSLSAPLSV------LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 303
+ +L A + + L + PL+++ + + + P S AL +
Sbjct: 139 VAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAAT 198
Query: 304 SAPLSVLLSALLFVSLSAPLSVLLSALL 331
+ + L V L+ +++ A +
Sbjct: 199 VSVDTFGAVRDLVVVLAFWVALAALAAI 226
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 30.7 bits (70), Expect = 4.5
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 20/179 (11%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
SA ++ SA L LL ++ L A +LL L+ + L LSV L V L
Sbjct: 30 TSAASLLAGSAYL-FLLGSVFARRLIA---LLLLTLILIPLPFSLSVTDLFSLVVLLLLT 85
Query: 211 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV-------SLSAPLSVLL 263
+ +LLS + + L S LL S A + S + + S + + +L
Sbjct: 86 VLLLLSLFVAL-LVGLASNLLQVGFLFSTEA-IKPDFSKINPIKGLKRIFSARSLVELLK 143
Query: 264 SALLFVSLSA-------PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
S L V++ + L S + ++++ L + L L +L+ LL
Sbjct: 144 SILKVVAVGLIFYFFLKNDLGTIVRLPGCSPMGIIVIVMTLLKKLLLVVLLFLLIVGLL 202
>gnl|CDD|149215 pfam08006, DUF1700, Protein of unknown function (DUF1700). This
family contains many hypothetical bacterial proteins and
two putative membrane proteins.
Length = 181
Score = 29.9 bits (68), Expect = 4.7
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 690 FVLLSAPLFVLLSALL------FVLLSAPLFVLRSALL--FVLLSAPLFVSLSAPLFVLR 741
F+++ P +L+ +L VLL +PL +L + F + +F S+ LF L
Sbjct: 93 FIIILIPFIILILLVLSLWIIGLVLLLSPLILLVKGIFGGFFFIIFNVFFSIG--LFGLG 150
Query: 742 SALLFV 747
L V
Sbjct: 151 LLLAIV 156
>gnl|CDD|129854 TIGR00771, DcuC, c4-dicarboxylate anaerobic carrier family protein.
These proteins are members of the C4-dicarboxylate
Uptake C (DcuC) Family (TC 2.A.61). The only
functionally characterized member of this family is the
anaerobic C4-dicarboxylate transporter (DcuC) of
Escherichia coli. DcuC has 12 GES predicted
transmembrane regions, is induced only under anaerobic
conditions, and is not repressed by glucose. It may
therefore function as a succinate efflux system during
anaerobic glucose fermentation. However, when
overexpressed, it can replace either DcuA or DcuB in
catalyzing fumarate-succinate exchange and fumarate
uptake [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 388
Score = 30.6 bits (69), Expect = 4.8
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 620 LLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLF-VLLSAPLSVLLS 678
LLS PL L+ +P +++LSA + F+ ++ L +LL LF L+S +S L +
Sbjct: 48 LLSRPL-KLIRSP-YIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSA 105
Query: 679 ALLFVSPSAPLFVLLS 694
+ SP + ++S
Sbjct: 106 VAVMASPGSIHSAMIS 121
>gnl|CDD|182464 PRK10441, PRK10441, iron-enterobactin transporter membrane protein;
Provisional.
Length = 335
Score = 30.4 bits (69), Expect = 4.9
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 165 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL---FV 221
+ LL + ++ LS+L+ A S P SV+L AL SA +++L A L
Sbjct: 12 AVPGLLLLLIIATALSLLIGAK-----SLPASVVLEALSGTCQSADCTIVLDARLPRTLA 66
Query: 222 SLSAPLSVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 280
L A ++ L+ L +L+ PL+ LL V+ A +++L A LF S+ L
Sbjct: 67 GLLAGGALGLAGALMQTLTRNPLAD--PGLLGVNAGASFAIVLGAALF-GYSSAQEQLAM 123
Query: 281 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 330
A +L A L V + +P+ + L+ V+L+A L L S +
Sbjct: 124 AFAG-ALVASLIVAFTGSQGGGQLSPVRLTLAG---VALAAVLEGLTSGI 169
Score = 29.7 bits (67), Expect = 8.5
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 213 VLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL---FV 269
+ LL + ++ LS+L+ A S P SV+L AL SA +++L A L
Sbjct: 12 AVPGLLLLLIIATALSLLIGAK-----SLPASVVLEALSGTCQSADCTIVLDARLPRTLA 66
Query: 270 SLSAPLSVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLS 328
L A ++ L+ L +L+ PL+ LL V+ A +++L A LF S+ L
Sbjct: 67 GLLAGGALGLAGALMQTLTRNPLAD--PGLLGVNAGASFAIVLGAALF-GYSSAQEQLAM 123
Query: 329 ALL 331
A
Sbjct: 124 AFA 126
>gnl|CDD|213773 TIGR03082, Gneg_AbrB_dup, membrane protein AbrB duplication. The
model describes a hydrophobic sequence region that is
duplicated to form the AbrB protein of Escherichia coli
(not to be confused with a Bacillus subtilis protein
with the same gene symbol). In some species, notably the
Cyanobacteria and Thermus thermophilus, proteins consist
of a single copy rather than two copies. The member from
Pseudomonas putida, PP_1415, was suggested to be an
ammonia monooxygenase characteristic of heterotrophic
nitrifiers, based on an experimental indication of such
activity in the organism and a glimmer of local sequence
similarity between parts of P. putida protein and an
instance of the AmoA protein from Nitrosomonas europaea
(PMID:9732537); we do not believe the sequence
similarity to be meaningful. The member from E. coli
(b0715, ybgN) appears to be the largely uncharacterized
AbrB (aidB regulator) protein of E. coli cited in
Volkert, et al. (PMID 8002588), although we did not
manage to trace the origin of association of the article
to the sequence.
Length = 156
Score = 29.4 bits (67), Expect = 5.2
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 163 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 222
L L LL L P + LL LL +LS + ++ P +L A + +
Sbjct: 5 LVGLAGGLLASLLGLPAAWLLGPLL-------AGAVLSLAGGLEITLPPWLLALAQVVIG 57
Query: 223 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-LSAPLS----- 276
+ L + + LLS +L ++LSA L+ LL+ L V L+A L+
Sbjct: 58 ILIGSRFTREVLAEL-KRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGG 116
Query: 277 ----VLLSALLFVSLSAPLSVLLSALLFVSLSAPL 307
L+A L ++ ++ LLFV L PL
Sbjct: 117 ASEMAALAAELGADVAFVAAMQTLRLLFVVLVVPL 151
Score = 29.4 bits (67), Expect = 5.2
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 179 LSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS 238
L L LL L P + LL LL +LS + ++ P +L A + +
Sbjct: 5 LVGLAGGLLASLLGLPAAWLLGPLL-------AGAVLSLAGGLEITLPPWLLALAQVVIG 57
Query: 239 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-LSAPLS----- 292
+ L + + LLS +L ++LSA L+ LL+ L V L+A L+
Sbjct: 58 ILIGSRFTREVLAEL-KRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGG 116
Query: 293 ----VLLSALLFVSLSAPLSVLLSALLFVSLSAPL 323
L+A L ++ ++ LLFV L PL
Sbjct: 117 ASEMAALAAELGADVAFVAAMQTLRLLFVVLVVPL 151
>gnl|CDD|216766 pfam01889, DUF63, Membrane protein of unknown function DUF63.
Proteins found in Archaebacteria of unknown function.
These proteins are probably transmembrane proteins.
Length = 272
Score = 30.3 bits (69), Expect = 5.3
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 658 FVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPL-FVLLSALLFVLLSAPLFVL 716
FVL + P +V+L A L VL A LF P + LF+ P + L+ + L +
Sbjct: 54 FVLATIP-YVILGASLRVLEDAGLFTPPLSYLFI---TPGIYFLIFFVALPALLISGKLF 109
Query: 717 RSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGW--LMVDSPIPTLAYTLIYLS 774
++ + L A + + L+ L +L+NE+ L+ + ++A LIYL
Sbjct: 110 KAGKDYYKLFAAVGLILAL------INLGLLLVNEKITHPWVLVAVVGLVSVATALIYLL 163
Query: 775 IVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELL 814
+ +M D+ ++ V + ++ A + +I I+ L
Sbjct: 164 AKPLKLSIMTDK-----LNLYVIFAHMLDASSTFIGIDFL 198
>gnl|CDD|201483 pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family
are integral membrane proteins. Some are involved in
drug resistance. AcrB cooperates with a membrane fusion
protein, AcrA, and an outer membrane channel TolC. The
structure shows the AcrB forms a homotrimer.
Length = 1021
Score = 30.7 bits (70), Expect = 5.4
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 152 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSALLFVSLSA 209
+ ++L+ L L+ A L+ S S PLS++ L+ PL+++ L AL L
Sbjct: 863 QLPILIALALLLVFLVLAALYESWSDPLSIM--------LTVPLALVGALLALWLRGLPN 914
Query: 210 PLSVLLSALLFVSLSAPLSVLLSALLFVSL 239
+ + + + L+ +A+L V
Sbjct: 915 SVYAQVGLITLIGLAV-----KNAILMVEF 939
Score = 30.7 bits (70), Expect = 5.4
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 216 SALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSALLFVSLSA 273
+ ++L+ L L+ A L+ S S PLS++ L+ PL+++ L AL L
Sbjct: 863 QLPILIALALLLVFLVLAALYESWSDPLSIM--------LTVPLALVGALLALWLRGLPN 914
Query: 274 PLSVLLSALLFVSLSAPLSVLLSALLFVSL 303
+ + + + L+ +A+L V
Sbjct: 915 SVYAQVGLITLIGLAV-----KNAILMVEF 939
>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].
Length = 1009
Score = 30.7 bits (70), Expect = 5.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 160 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSA 217
A L L ALL V L VL A + S S P V+ L+ PL +L L A
Sbjct: 850 QALLLFAL-ALLVVFL-----VL--AAQYESFSIPFIVM--------LTVPLGLLGALLA 893
Query: 218 LLFVSLSAPLSVLLSALLFVSLSAPLSVLL 247
LL L + + + + L A ++L+
Sbjct: 894 LLLTGLPLDVYAQIGLITLIGLVAKNAILI 923
Score = 30.7 bits (70), Expect = 5.4
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVL--LSA 265
A L L ALL V L VL A + S S P V+ L+ PL +L L A
Sbjct: 850 QALLLFAL-ALLVVFL-----VL--AAQYESFSIPFIVM--------LTVPLGLLGALLA 893
Query: 266 LLFVSLSAPLSVLLSALLFVSLSAPLSVLL 295
LL L + + + + L A ++L+
Sbjct: 894 LLLTGLPLDVYAQIGLITLIGLVAKNAILI 923
Score = 30.3 bits (69), Expect = 7.6
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 654 SALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSA 711
L + A L V L VL A + S S P V+L+ PL LL ALL +LL+
Sbjct: 849 GQALLLFALALLVVFL-----VL--AAQYESFSIPFIVMLTVPL-GLLGALLALLLTG 898
>gnl|CDD|216994 pfam02361, CbiQ, Cobalt transport protein. This family consists of
various cobalt transport proteins Most of which are
found in Cobalamin (Vitamin B12) biosynthesis operons.
In Salmonella the cbiN cbiQ (product CbiQ in this
family) and cbiO are likely to form an active cobalt
transport system.
Length = 217
Score = 30.0 bits (68), Expect = 5.7
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 182 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSA 241
LL L + +++ ALL ++L L V L L L PL L + +
Sbjct: 19 LLVLLAVLPPGPVGLLIIIALLLLTL---LLVGLPRFLARFLRLPLLFPLLGFIILLF-- 73
Query: 242 PLSVLLSALLFVSLSAPL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 298
+F + +L LL + +S LSALLF++L+ P + L S L
Sbjct: 74 QNIGTEGQFVFSGGGIGITSWGLLRGLLLALRIST----SLSALLFLALTTPPAELTSGL 129
Query: 299 LFVSLSAPLSVLLSALL 315
L PL + LL
Sbjct: 130 --RRLGVPLELAEILLL 144
Score = 29.2 bits (66), Expect = 9.7
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 14/144 (9%)
Query: 143 VCLTECTPVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSAL 202
V L + L + +++ ALL ++L L V L L L PL L
Sbjct: 12 VKLIWLLLLVLLAVLPPGPVGLLIIIALLLLTL---LLVGLPRFLARFLRLPLLFPLLGF 68
Query: 203 LFVSLSAPLSVLLSALLFVSLSAPL---SVLLSALLFVSLSAPLSVLLSALLFVSLSAPL 259
+ + +F + +L LL + +S LSALLF++L+ P
Sbjct: 69 IILLF--QNIGTEGQFVFSGGGIGITSWGLLRGLLLALRIST----SLSALLFLALTTPP 122
Query: 260 SVLLSALLFVSLSAPLSVLLSALL 283
+ L S L L PL + LL
Sbjct: 123 AELTSGL--RRLGVPLELAEILLL 144
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 30.4 bits (69), Expect = 5.8
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 21/183 (11%)
Query: 151 VSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAP 210
AL + L A S A F+ LS+ L +L LS L +
Sbjct: 71 AFALSYGLLPAKESSAAVAAAFIFLSS---------LGKALVDVLSDALYSERGRQEPLA 121
Query: 211 LSVLLSAL-LFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFV 269
L+S + ++ + +LS L + +S L++A L L+ + +A+L
Sbjct: 122 GPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAAL-----QLLTCVDAAVLKE 176
Query: 270 SLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSA 329
L L +S A + + AP L ++S A V+ A
Sbjct: 177 EEVLGLGRPPVPCLLGLNREVISRNWKAFRYPEILAPT------LTWISFWAAPLVIAKA 230
Query: 330 LLF 332
+F
Sbjct: 231 DMF 233
>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc
metalloproteases (MEROPS family M50) cleaves
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. Members of this family use
proteolytic activity within the membrane to transfer
information across membranes to integrate gene
expression with physiologic stresses occurring in
another cellular compartment. The domain core structure
appears to contain at least three transmembrane helices
with a catalytic zinc atom coordinated by three
conserved residues contained within the consensus
sequence HExxH, together with a conserved aspartate
residue. The S2P/M50 family of RIP proteases is widely
distributed; in eukaryotic cells, they regulate such
processes as sterol and lipid metabolism, and
endoplasmic reticulum (ER) stress responses. In
sterol-depleted mammalian cells, a two-step proteolytic
process releases the N-terminal domains of sterol
regulatory element-binding proteins (SREBPs) from
membranes of the ER. These domains translocate into the
nucleus, where they activate genes of cholesterol and
fatty acid biosynthesis. It is the second proteolytic
step that is carried out by the SREBP Site-2 protease
(S2P) which is present in this CD superfamily.
Prokaryotic S2P/M50 homologs have been shown to regulate
stress responses, sporulation, cell division, and cell
differentiation. In Escherichia coli, the S2P homolog
RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses, and in Bacillus
subtilis, the S2P homolog SpoIVFB is involved in the
pro-sigmaK pathway of spore formation. Some of the
subfamilies within this hierarchy contain one or two PDZ
domain insertions, with putative regulatory roles, such
as the inhibition of substrate cleavage as seen by the
RseP PDZ domain.
Length = 180
Score = 29.5 bits (67), Expect = 5.9
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 150 PVSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 208
P L V+L+ PL+ LL ALL + L L L A + + S+ L+ LL+ L ++L+
Sbjct: 71 PRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLLAFLALINLN 129
>gnl|CDD|224218 COG1299, FruA, Phosphotransferase system, fructose-specific IIC
component [Carbohydrate transport and metabolism].
Length = 343
Score = 30.2 bits (69), Expect = 6.2
Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 161 APLSVLLSALLF-VSLSAPLSVLLSALL-FV-SLSAPLSVLLSALL----FVSLSAPLSV 213
L L++ LL + P++ + + L ++ S+ ++LL A+L + P++
Sbjct: 134 PLLGTLITGLLMYYVIGPPIAAINNGLTDWLQSMGGSNAILLGAILGAMMAFDMGGPVNK 193
Query: 214 LLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF------VSLSAPLSVLLSALL 267
L+ + ++A++ + PL + L+ LL A + L+ L
Sbjct: 194 AAYTFGLGLLAQGVYAPMAAVMAAGMVPPLGLGLATLLGKKKFTAEEREAGKAALVMGLS 253
Query: 268 FVS-------LSAPLSVLLSALLFVSLSAPLSVLLSALL-------FVSLSAPLSVLLSA 313
F++ + PL V+ S +L ++ L+++ A + FV +S +L
Sbjct: 254 FITEGAIPFAAADPLRVIPSNMLGSAVGGALTMIFGAKVMAPHGGIFVLPLPGVSNILGY 313
Query: 314 LLFVSLSAPLSVLLSALL 331
LL +++ ++ LL A L
Sbjct: 314 LLAIAIGTVVTALLVAFL 331
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 30.5 bits (69), Expect = 6.4
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 657 LFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLF 706
V L L L L +S L +LL PL L+ +LL
Sbjct: 124 NLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173
>gnl|CDD|217981 pfam04235, DUF418, Protein of unknown function (DUF418). Probable
integral membrane protein.
Length = 163
Score = 29.5 bits (67), Expect = 6.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 210
L+ + L PL+ LL ALL + L + L P + ++ +
Sbjct: 21 LLIGLLLGLPLN-LLGALLAALGWESPPLGLLGFILSMLGGPALALGYAALIVLLYQREK 79
Query: 211 LSVLLSALLFV---SLSAPL--SVLLSAL-------LFVSLSAPLSVLLSALLFVSLSAP 258
LL L V +L+ L S++ + + LF L +LL+ +++
Sbjct: 80 GRKLLRPLAAVGRMALTNYLLQSIIGTLIFYGYGLGLFGQLGRAALLLLAIGIWL----- 134
Query: 259 LSVLLSALLF 268
L +L S L
Sbjct: 135 LQLLFSKLWL 144
Score = 29.5 bits (67), Expect = 6.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 169 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 226
L+ + L PL+ LL ALL + L + L P + ++ +
Sbjct: 21 LLIGLLLGLPLN-LLGALLAALGWESPPLGLLGFILSMLGGPALALGYAALIVLLYQREK 79
Query: 227 LSVLLSALLFV---SLSAPL--SVLLSAL-------LFVSLSAPLSVLLSALLFVSLSAP 274
LL L V +L+ L S++ + + LF L +LL+ +++
Sbjct: 80 GRKLLRPLAAVGRMALTNYLLQSIIGTLIFYGYGLGLFGQLGRAALLLLAIGIWL----- 134
Query: 275 LSVLLSALLF 284
L +L S L
Sbjct: 135 LQLLFSKLWL 144
Score = 29.5 bits (67), Expect = 6.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 185 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 242
L+ + L PL+ LL ALL + L + L P + ++ +
Sbjct: 21 LLIGLLLGLPLN-LLGALLAALGWESPPLGLLGFILSMLGGPALALGYAALIVLLYQREK 79
Query: 243 LSVLLSALLFV---SLSAPL--SVLLSAL-------LFVSLSAPLSVLLSALLFVSLSAP 290
LL L V +L+ L S++ + + LF L +LL+ +++
Sbjct: 80 GRKLLRPLAAVGRMALTNYLLQSIIGTLIFYGYGLGLFGQLGRAALLLLAIGIWL----- 134
Query: 291 LSVLLSALLF 300
L +L S L
Sbjct: 135 LQLLFSKLWL 144
Score = 29.5 bits (67), Expect = 6.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 201 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 258
L+ + L PL+ LL ALL + L + L P + ++ +
Sbjct: 21 LLIGLLLGLPLN-LLGALLAALGWESPPLGLLGFILSMLGGPALALGYAALIVLLYQREK 79
Query: 259 LSVLLSALLFV---SLSAPL--SVLLSAL-------LFVSLSAPLSVLLSALLFVSLSAP 306
LL L V +L+ L S++ + + LF L +LL+ +++
Sbjct: 80 GRKLLRPLAAVGRMALTNYLLQSIIGTLIFYGYGLGLFGQLGRAALLLLAIGIWL----- 134
Query: 307 LSVLLSALLF 316
L +L S L
Sbjct: 135 LQLLFSKLWL 144
Score = 29.5 bits (67), Expect = 6.4
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 20/130 (15%)
Query: 217 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLS--VLLSALLFVSLSAP 274
L+ + L PL+ LL ALL + L + L P + ++ +
Sbjct: 21 LLIGLLLGLPLN-LLGALLAALGWESPPLGLLGFILSMLGGPALALGYAALIVLLYQREK 79
Query: 275 LSVLLSALLFV---SLSAPL--SVLLSAL-------LFVSLSAPLSVLLSALLFVSLSAP 322
LL L V +L+ L S++ + + LF L +LL+ +++
Sbjct: 80 GRKLLRPLAAVGRMALTNYLLQSIIGTLIFYGYGLGLFGQLGRAALLLLAIGIWL----- 134
Query: 323 LSVLLSALLF 332
L +L S L
Sbjct: 135 LQLLFSKLWL 144
>gnl|CDD|233565 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. This model describes the 14th
(based on E. coli) structural gene, N, of bacterial and
chloroplast energy-transducing NADH (or NADPH)
dehydrogenases. This model does not describe any subunit
of the mitochondrial complex I (for which the subunit
composition is very different), nor NADH dehydrogenases
that are not coupled to ion transport. The Enzyme
Commission designation 1.6.5.3, for NADH dehydrogenase
(ubiquinone), is applied broadly, perhaps unfortunately,
even if the quinone is menaquinone (Thermus,
Mycobacterium) or plastoquinone (chloroplast). For
chloroplast members, the name NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone [Energy metabolism, Electron transport].
Length = 468
Score = 30.3 bits (69), Expect = 6.5
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 624 PLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSA---L 680
P +LL +LL + +L++ VLLS + + L+ + L
Sbjct: 6 PEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFFGFSF 65
Query: 681 LFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLF 714
V + L L +LLS LL + F
Sbjct: 66 FIVDNFS-----LIIKLILLLSTLLLFFFALSYF 94
>gnl|CDD|192487 pfam10225, DUF2215, Uncharacterized conserved protein (DUF2215).
This entry is the central 200 residues of a family of
proteins conserved from worms to humans. The function is
unknown.
Length = 248
Score = 29.7 bits (67), Expect = 6.5
Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 657 LFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVL 716
LL L + L APL +S S + L VL S LL V L
Sbjct: 13 RVFLLVVGLILFLLAPL---------LSRSVLFYYSSGIALGVLASLLLVVFQLMKLLPR 63
Query: 717 RSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNE 751
+S L L++L+ LL + L
Sbjct: 64 KSGFYLTLYG-----GWGVGLYLLQ--LLSMNLQL 91
>gnl|CDD|214879 smart00879, Brix, The Brix domain is found in a number of
eukaryotic proteins. Members include SSF proteins from
yeast and humans, Arabidopsis thaliana Peter Pan-like
protein and several hypothetical proteins.
Length = 180
Score = 29.2 bits (66), Expect = 6.8
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 21/83 (25%)
Query: 866 RVSSYTYHLISNLA---INDCFLQRLDYKIANAVWWYYFSKLLEFC-----DTFFFIL-- 915
+ S T L +L + R K+ +LLEF +
Sbjct: 7 KPSKRTRQLAKDLRRLFPPSTKINRGKNKLN---------ELLEFASEKGNTDLLVVFES 57
Query: 916 --RKKDAQLTFLHVYHHSTMFFL 936
+ + LT + + T+ F
Sbjct: 58 SSKGRPLNLTIYRLPNGPTLDFK 80
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 30.3 bits (69), Expect = 6.9
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 24/118 (20%)
Query: 616 ICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLF--VLRSALLF--------------- 658
+ L L L LL L L L + LS F +LR L +
Sbjct: 200 LLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE 259
Query: 659 ------VLLSAPLFVLLSAPLSVLLSALLFV-SPSAPLFVLLSAPLFVLLSALLFVLL 709
L + L +++ +++ A++F+ S L VL + PL VL++ + LL
Sbjct: 260 LEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
>gnl|CDD|223961 COG1030, NfeD, Membrane-bound serine protease (ClpP class)
[Posttranslational modification, protein turnover,
chaperones].
Length = 436
Score = 30.0 bits (68), Expect = 7.0
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 661 LSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVL-LSALLF---VLLSAPLFVL 716
++ P L+ L L +SP + ++ A L +L LLF L +L
Sbjct: 231 ITDPSVALILLLLGFLGLIFELLSPGFGVPGIIGAILLLLGFYGLLFLGINWAGLLLIIL 290
Query: 717 RSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIV 776
+ L+ P F + +L L +L T G+L+ S TLA I +
Sbjct: 291 GAILIVAEAFVPGFGVIGLLGIILFIIGLLLLFPSGTMGYLVSISLFLTLAILSI---LF 347
Query: 777 TIGPRLMRDRKPYKLT 792
+ + K YKL
Sbjct: 348 KVFLGRLPAFKIYKLV 363
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 30.0 bits (67), Expect = 7.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 956 NSFIHVLMYSYYALAALGPHIAKYLWWKKYLTIL 989
+SF+ ++ +Y G K+++WK+Y I+
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQYYDIV 77
>gnl|CDD|215952 pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone
oxidoreductase chain 6.
Length = 140
Score = 28.7 bits (65), Expect = 7.7
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 166 LLSALLFVSLSAPLSVLLS-ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLS 224
+LS+LL + P+ + LS LL +SLS L +L S+ L + L V + +L + L
Sbjct: 1 ILSSLLVLFSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLIL---FLVYVGGILVLFL- 56
Query: 225 APLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLF 284
V LS LL LL + + +L S L F S S + L
Sbjct: 57 --YVVSLSPNEKFKFKKKSKFLLLLLLLLFILLLFFLLFSNLSFSLNSISSSNVNLLSLL 114
Query: 285 VSLSAPLSVLLSALLFVSL 303
S ++ + +LLS LL ++L
Sbjct: 115 YSSNSLIFILLSLLLLIAL 133
>gnl|CDD|188318 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease
protein.
Length = 267
Score = 29.6 bits (67), Expect = 8.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 687 APLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLF 746
A F L+A L ++ LL +L + P +L +F L+ L S S LFVL LL
Sbjct: 22 AFFFDALAAVLESMIDGLLDLLQAPPPLLL--IAIFAALAWWLQRSWSLALFVL-LGLLL 78
Query: 747 VL 748
++
Sbjct: 79 II 80
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence
factor [General function prediction only].
Length = 518
Score = 29.9 bits (68), Expect = 8.4
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 614 TPICLVLLSAPLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPL 673
TP+ + ++S + +LL+ L L ++ + + LL+ LL L L
Sbjct: 387 TPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGW 446
Query: 674 SVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSL 733
+ L L ++ +++A L LL L L ++R +L + L +
Sbjct: 447 GLFLILKLLLAS-----AIMAAALLALLHLAQREWLLGGLLLIRLGVLLL-----LVLLG 496
Query: 734 SAPLFVLRSALLFVLLNERTR 754
+ F + L F + R
Sbjct: 497 AGVYFAMLLLLGFRVRGFARR 517
>gnl|CDD|131806 TIGR02759, TraD_Ftype, type IV conjugative transfer system coupling
protein TraD. The TraD protein performs an essential
coupling function in conjugative type IV secretion
systems. This protein sits at the inner membrane in
contact with the assembled pilus and its scaffold as well
as the relaxosome-plasmid DNA complex (through TraM).
Length = 566
Score = 30.1 bits (68), Expect = 8.4
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 25/153 (16%)
Query: 921 QLTFLHVYHHSTMFF------LWWIGIKWV--PSGSTFLPAMVNSFIHVLMYSYYALAAL 972
Q+TF H+ MFF +W+ I ++ + A VN+F+ + Y L L
Sbjct: 6 QITF----HNIRMFFQVTKTLFYWMFILFIILTGLILWFMASVNTFLGNIYYWEAQLFTL 61
Query: 973 GPHIAK---YLWW--KKYLTILQLIQFTTALILGVNGIKSGCDFPLWMQYLLVFYMITFI 1027
HI + W K Y T I +I + + L ++ F+
Sbjct: 62 VGHIKTQEVFTPWFGKTYTTYQAQILTNPYVIRAYDQLWQA--LQKSALAALAISLVVFL 119
Query: 1028 VLF------GNFYAKAYIHKVFKIHKEKEAKKS 1054
+ G +K + + ++ KE K
Sbjct: 120 LFMFFFIKRGEQQSKDHFIRGSQLSSPKELIKK 152
>gnl|CDD|181074 PRK07668, PRK07668, hypothetical protein; Validated.
Length = 254
Score = 29.6 bits (67), Expect = 8.6
Identities = 24/152 (15%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 641 LFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPL---SVLLSALLFVSP--SAPLFVLLSA 695
L +++ +F+LR A L+ F+++ + +L+ A++F++ P+
Sbjct: 117 LILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIPMLLIVAIMFLNKWYGTPMLQFTQM 176
Query: 696 PLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSLSAPLFVLRSALLFVLLNERTRG 755
++L + + + ++ L L L+ PL ++ LF N
Sbjct: 177 QSYILAGLIFLITVIINIYFLGWFGLLYLI---------IPLSIM---FLFKYFNSEDVV 224
Query: 756 WLMVDSPIPTLA-YTLIYLSIVTIGPRLMRDR 786
++ I + Y L+++ I + +++
Sbjct: 225 PMIFQIIILYGSLYVLMFIEI-----KREKNK 251
>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50.
Length = 206
Score = 29.3 bits (66), Expect = 9.5
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 633 LFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLF---VLLSAPLSVLLSALLFVSPSAPL 689
L + L+ PL + A L LL + P+ V+ S+ LS ++ S SA
Sbjct: 76 LLISLAGPLANFILALLLFALLLLLPGIPVPPVIGGVVVGSSKLSGPVAIAKVGSTSALS 135
Query: 690 FVLLSAPLFVLLSALLFVLLSAPLFVLR-SALLFVLLSA---PLFVSLSAPLFVLRSALL 745
++ LL+ L + P+ L +L LL+ PL ++++ ALL
Sbjct: 136 GLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGRPLNERAENYIYLVGLALL 195
Query: 746 FVLL 749
+L+
Sbjct: 196 LLLI 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.140 0.461
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 50,082,291
Number of extensions: 4930860
Number of successful extensions: 14050
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11219
Number of HSP's successfully gapped: 1363
Length of query: 1076
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 969
Effective length of database: 6,191,724
Effective search space: 5999780556
Effective search space used: 5999780556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (28.5 bits)