RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17252
(1076 letters)
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/205 (14%), Positives = 39/205 (19%), Gaps = 2/205 (0%)
Query: 413 CTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPI 472
T + C C +C + T CT C + C
Sbjct: 159 APVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQ 218
Query: 473 CLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTK 532
C CT + C + +C C + + P C T
Sbjct: 219 CAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD-TFESMHNPEGRYTFGASCVTT 277
Query: 533 CTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPI 592
C L+ C C P C C C VC
Sbjct: 278 CPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEK-CSKPCARVCYGLGMEHLRGARAIT 336
Query: 593 CLTECTPVCFTKCTPICLTECTPIC 617
K
Sbjct: 337 SDNVQEFDGCKKIFGSLAFLPESFD 361
Score = 51.9 bits (123), Expect = 8e-07
Identities = 26/228 (11%), Positives = 43/228 (18%), Gaps = 1/228 (0%)
Query: 349 CTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPI 408
T + C C +C + T CT C + C
Sbjct: 159 APVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQ 218
Query: 409 CLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTE 468
C CT ++C + C C + + P C+T
Sbjct: 219 CAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD-TFESMHNPEGRYTFGASCVTT 277
Query: 469 CTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPV 528
C L+ C C P +C +
Sbjct: 278 CPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITS 337
Query: 529 CFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPV 576
+ C + + L +
Sbjct: 338 DNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEI 385
Score = 51.9 bits (123), Expect = 9e-07
Identities = 27/235 (11%), Positives = 46/235 (19%), Gaps = 5/235 (2%)
Query: 388 ECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTP 447
+ T + C C +C T CT C
Sbjct: 150 DVFRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGR 209
Query: 448 VCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCF---TKCTPVCFTKCTPV 504
+ C C CT ++C + +C C + + +
Sbjct: 210 LPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYT 269
Query: 505 CFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTE 564
C C + CT VC V + T C P
Sbjct: 270 FGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHL 329
Query: 565 CTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLV 619
+ C + + P+ + +
Sbjct: 330 RGARAITSDNVQEFDGCKKIF--GSLAFLPESFDGDPSSGIAPLRPEQLQVFETL 382
Score = 50.0 bits (118), Expect = 4e-06
Identities = 36/235 (15%), Positives = 51/235 (21%), Gaps = 12/235 (5%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTP 399
+ + C C +C + T CT C + C C CT
Sbjct: 166 NRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTG 225
Query: 400 IYLTECTP--------ICLTECTPIY---LTECTPICLTECTPTCLTECTPICLTECTPV 448
++C IC C + + E T C C
Sbjct: 226 PKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLST 285
Query: 449 CLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTK 508
+ CT VC V + T C T F
Sbjct: 286 EVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDG 345
Query: 509 CTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLT 563
C I + + P + L E T + P L
Sbjct: 346 CKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFE-TLEEITGYLYISAWPDSLR 399
Score = 45.8 bits (107), Expect = 8e-05
Identities = 23/133 (17%), Positives = 36/133 (27%), Gaps = 1/133 (0%)
Query: 18 TECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECT 77
T + C C +C + T CT C + + C C CT
Sbjct: 165 TNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCT 224
Query: 78 PVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPVCL 137
++C + +C C + + P C+T C L
Sbjct: 225 GPKHSDCLACLHFNHSGICELHCPALVTYNTD-TFESMHNPEGRYTFGASCVTTCPYNYL 283
Query: 138 TECTPVCLTECTP 150
+ C C P
Sbjct: 284 STEVGSCTLVCPP 296
Score = 42.7 bits (99), Expect = 7e-04
Identities = 21/136 (15%), Positives = 29/136 (21%), Gaps = 9/136 (6%)
Query: 493 CTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPV 552
T + C C C + T CT C +
Sbjct: 151 VFRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRL 210
Query: 553 CFTKCTPVCLTECTPVCPSECTP--------VCLTECTPVCFTKCTPICLTECTPVCFTK 604
C C CT S+C +C C + + P
Sbjct: 211 PTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD-TFESMHNPEGRYT 269
Query: 605 CTPICLTECTPICLVL 620
C+T C L
Sbjct: 270 FGASCVTTCPYNYLST 285
Score = 42.3 bits (98), Expect = 7e-04
Identities = 26/150 (17%), Positives = 41/150 (27%), Gaps = 4/150 (2%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTP 62
C +C + T CT C + C C CT ++C +
Sbjct: 182 HCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSG 241
Query: 63 VCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPIC-- 120
+C C + + P C+T C YL+ C C P
Sbjct: 242 ICELHCPALVTYNTD-TFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQE 300
Query: 121 -LTECTPICLTECTPVCLTECTPVCLTECT 149
E +C+ C C + +
Sbjct: 301 VTAEDGTQRCEKCSKPCARVCYGLGMEHLR 330
Score = 41.9 bits (97), Expect = 0.001
Identities = 29/163 (17%), Positives = 40/163 (24%), Gaps = 13/163 (7%)
Query: 2 EKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTP--------ICLTECT 53
E C + T CT C + C C CT ++C IC C
Sbjct: 189 EDCQILTGTICTSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCP 248
Query: 54 PICLTERTPVCLTECTPICLTECTPVCLTECTPVYL----TECTPVCLTECTPIYLTECT 109
+ + P C+T C YL CT VC + + T
Sbjct: 249 ALVTYNTD-TFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGT 307
Query: 110 PICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVS 152
C P +T C +
Sbjct: 308 QRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIF 350
Score = 37.3 bits (85), Expect = 0.032
Identities = 26/269 (9%), Positives = 47/269 (17%), Gaps = 1/269 (0%)
Query: 347 TECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECT 406
CT +C + + T C P +T C
Sbjct: 288 GSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCK 347
Query: 407 PICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCL 466
I + + P + + ++ L
Sbjct: 348 KIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSVFQNL 407
Query: 467 TECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTP-VCLTEC 525
L + + + + + +C P L
Sbjct: 408 RIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRN 467
Query: 526 TPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVC 585
+C L + C T+C C+ EC
Sbjct: 468 PHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWK 527
Query: 586 FTKCTPICLTECTPVCFTKCTPICLTECT 614
+ C P C
Sbjct: 528 GLPREYVSDKRCLPCHPECQPQNSSETCF 556
Score = 36.1 bits (82), Expect = 0.059
Identities = 28/200 (14%), Positives = 40/200 (20%), Gaps = 6/200 (3%)
Query: 338 PLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPIC---LTECTPVCL 394
C T C +C C CL C C +T T
Sbjct: 200 TSGCARCKGRLPTDCCHEQCAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFE 259
Query: 395 TECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTC---LTECTPICLTECTPVCLT 451
+ P C+T C YL+ C C P E +C+ C
Sbjct: 260 SMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCSKPCAR 319
Query: 452 ECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTP 511
C + + + + +
Sbjct: 320 VCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRPEQLQVF 379
Query: 512 ICLTECTPVCLTECTPVCFT 531
L E T P
Sbjct: 380 ETLEEITGYLYISAWPDSLR 399
Score = 35.0 bits (79), Expect = 0.17
Identities = 28/288 (9%), Positives = 58/288 (20%), Gaps = 11/288 (3%)
Query: 338 PLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTEC 397
+ + E C C + CT +C + + T C +C
Sbjct: 255 TDTFESMHNPEGRYTFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRC-EKC 313
Query: 398 TPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVC 457
+ C + + + + + +
Sbjct: 314 SKPCARVCYGLGMEHLRGARAITSDNVQEFDGCKKIFGSLAFLPESFDGDPSSGIAPLRP 373
Query: 458 FTKCTPVCLTECT------PICLTECTLVCLTKCTPVCFTKCTPVCFT---KCTPVCFTK 508
L E T + L + ++ + +
Sbjct: 374 EQLQVFETLEEITGYLYISAWPDSLRDLSVFQNLRIIRGRILHDGAYSLTLQGLGIHSLG 433
Query: 509 CTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPV 568
+ + +CF P P + + + C +
Sbjct: 434 LRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRNPHQALLHSGNRPEEDCGLEGLVCNSL 493
Query: 569 CPS-ECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTP 615
C C T+C C+ EC + C P
Sbjct: 494 CAHGHCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLP 541
Score = 31.5 bits (70), Expect = 1.9
Identities = 13/74 (17%), Positives = 19/74 (25%)
Query: 68 CTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPI 127
T + C C +C + T CT C + C
Sbjct: 159 APVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQ 218
Query: 128 CLTECTPVCLTECT 141
C CT ++C
Sbjct: 219 CAAGCTGPKHSDCL 232
Score = 31.1 bits (69), Expect = 2.3
Identities = 12/75 (16%), Positives = 17/75 (22%)
Query: 75 ECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTP 134
+ T + C C +C + T CT C
Sbjct: 150 DVFRKNNQLAPVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGR 209
Query: 135 VCLTECTPVCLTECT 149
+ C C CT
Sbjct: 210 LPTDCCHEQCAAGCT 224
Score = 30.4 bits (67), Expect = 3.6
Identities = 16/98 (16%), Positives = 25/98 (25%)
Query: 52 CTPICLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPI 111
T R+ C C +C + T CT C + C
Sbjct: 159 APVDIDTNRSRACPPCAPACKDNHCWGESPEDCQILTGTICTSGCARCKGRLPTDCCHEQ 218
Query: 112 CLTECTPICLTECTPICLTECTPVCLTECTPVCLTECT 149
C CT ++C + +C C +
Sbjct: 219 CAAGCTGPKHSDCLACLHFNHSGICELHCPALVTYNTD 256
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 52.6 bits (125), Expect = 4e-07
Identities = 27/180 (15%), Positives = 40/180 (22%), Gaps = 10/180 (5%)
Query: 343 PICLTECTPICLTECTPICLTECTP-ICLTECTPIC-----LTECTPICLTECTPVCLTE 396
C C + T IC +C+ C C C CT ++
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESD 223
Query: 397 CTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPV 456
C C C P+ L T + + P C+ +C +
Sbjct: 224 CLVCRKFRDEATCKDTCPPLMLYNPTTYQM-DVNPEGKYSFGATCVKKCPRNYVVTDHGS 282
Query: 457 CFTKCTP---VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPIC 513
C C + C + F CT I
Sbjct: 283 CVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 52.6 bits (125), Expect = 5e-07
Identities = 29/204 (14%), Positives = 50/204 (24%), Gaps = 9/204 (4%)
Query: 410 LTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTP-VCFTKCTPVCLTE 468
++ ++ L C C C + T +C +C+ C +
Sbjct: 144 VSSDFLSNMSMDFQNHLGSC-QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGK 202
Query: 469 CTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPV 528
C C C CT + C + C C P+ L T +
Sbjct: 203 SPSDC---CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEG 259
Query: 529 CFTKCTPVCLTECTPVCLTECTPVCFTKCTP---VCLTECTPVCPSECTPVCLTECTPVC 585
++ C+ +C + C C + C P
Sbjct: 260 KYSFGAT-CVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 586 FTKCTPICLTECTPVCFTKCTPIC 609
+ + F CT I
Sbjct: 319 GEFKDSLSINATNIKHFKNCTSIS 342
Score = 52.2 bits (124), Expect = 6e-07
Identities = 27/183 (14%), Positives = 40/183 (21%), Gaps = 8/183 (4%)
Query: 439 PICLTECTPVCLTECTPVCFTKCTP-VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVC 497
C C K T +C +C+ C + C C C CT
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPR 220
Query: 498 FTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKC 557
+ C + C C P+ L T + C+ +C
Sbjct: 221 ESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRNYVVTD 279
Query: 558 TPVCLTECTP---VCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECT 614
C+ C + C P + CT
Sbjct: 280 HGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCT 339
Query: 615 PIC 617
I
Sbjct: 340 SIS 342
Score = 50.3 bits (119), Expect = 3e-06
Identities = 28/191 (14%), Positives = 46/191 (24%), Gaps = 16/191 (8%)
Query: 351 PICLTECTPICLTECTPICLTECTP-ICLTECTPICLTECTPVCLTECTPIYLTECTPIC 409
C C + T IC +C+ C + C C C
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC-----------CHNQC 212
Query: 410 LTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTEC 469
CT ++C TC C P+ L T + ++ C+ +C
Sbjct: 213 AAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKC 271
Query: 470 TPICLTECTLVCLTKCTPVCFT---KCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECT 526
+ C+ C + C P + +
Sbjct: 272 PRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATN 331
Query: 527 PVCFTKCTPVC 537
F CT +
Sbjct: 332 IKHFKNCTSIS 342
Score = 44.2 bits (103), Expect = 2e-04
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 13/153 (8%)
Query: 4 CTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECT--------PICLTECTPI 55
IC +C+ C + C C C CT ++C C C P+
Sbjct: 187 TKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPL 243
Query: 56 CLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTE 115
L T + + P C+ +C Y+ C+ C E + +
Sbjct: 244 MLYNPTTYQM-DVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADS-YEMEEDGVRK 301
Query: 116 CTPICLTECTPICLTECTPVCLTECTPVCLTEC 148
C + +
Sbjct: 302 CKKCEGPCRKVCNGIGIGEFKDSLSINATNIKH 334
Score = 43.8 bits (102), Expect = 3e-04
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 13/138 (9%)
Query: 14 PVCLTECTPICLTECTPVCLTECTP-ICLTECTPICLTECTPICLTERTPVCLTECTPIC 72
C C + T IC +C+ C + C C C
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC-----------CHNQC 212
Query: 73 LTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTEC 132
CT ++C C C P+ L T + + P C+ +C
Sbjct: 213 AAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM-DVNPEGKYSFGATCVKKC 271
Query: 133 TPVCLTECTPVCLTECTP 150
+ C+ C
Sbjct: 272 PRNYVVTDHGSCVRACGA 289
Score = 42.2 bits (98), Expect = 9e-04
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 12/136 (8%)
Query: 341 CTPICLTECTPICLTECT--------PICLTECTPICLTECTPICLTECTPICLTECTPV 392
C C CT ++C C C P+ L T + + P
Sbjct: 208 CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM-DVNPEGKYSFGAT 266
Query: 393 CLTECTPIYLTECTPICLTECTPIYLTE---CTPICLTECTPTCLTECTPICLTECTPVC 449
C+ +C Y+ C+ C C P +
Sbjct: 267 CVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLS 326
Query: 450 LTECTPVCFTKCTPVC 465
+ F CT +
Sbjct: 327 INATNIKHFKNCTSIS 342
Score = 41.1 bits (95), Expect = 0.002
Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 6/149 (4%)
Query: 6 PICLTECTPVCLTECTPICLTECTP-VCLTECTPICLTECTPICLTECTPICLTERTPVC 64
C C + T +C +C+ C + C C C T
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPR 220
Query: 65 LTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTEC 124
++C C C P+ L T + + P C+ +C +
Sbjct: 221 ESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM-DVNPEGKYSFGATCVKKCPRNYVVTD 279
Query: 125 TPICLTECTPVCLTECTPVCLTECTPVSA 153
C+ C E + +C
Sbjct: 280 HGSCVRACGADS-YEMEEDGVRKCKKCEG 307
Score = 39.1 bits (90), Expect = 0.007
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 4/139 (2%)
Query: 1 MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTER 60
+ C C CT ++C C C P+ L T + + P
Sbjct: 205 SDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQM-DVNPEGKYSF 263
Query: 61 TPVCLTECTPICLTECTPVCLTECTPVYLTE---CTPVCLTECTPIYLTECTPICLTECT 117
C+ +C + C+ C C P
Sbjct: 264 GATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKD 323
Query: 118 PICLTECTPICLTECTPVC 136
+ + CT +
Sbjct: 324 SLSINATNIKHFKNCTSIS 342
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 51.1 bits (121), Expect = 2e-06
Identities = 30/175 (17%), Positives = 43/175 (24%), Gaps = 17/175 (9%)
Query: 365 CTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPI 424
C C P T T + C + C +C T C T
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGLC 207
Query: 425 CLTECTPTCLTECTPICLTECTPV-----CLTECTPVCFTKCTPVCLT--ECTPICLTEC 477
C +EC C P C C+ C P + C+ C + C
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK-C 266
Query: 478 TLVCLTKCTP------VCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECT 526
C C +C + + T C C C + +
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
Score = 49.5 bits (117), Expect = 5e-06
Identities = 37/192 (19%), Positives = 49/192 (25%), Gaps = 18/192 (9%)
Query: 445 CTPVCLTECTPVCFTKCTPVCLTECTPICLTEC--TLVCLTKCTPVCFTKCTPVCFTKCT 502
C C P T T + C C C +C + C
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCH 209
Query: 503 PVCFTKCT-PICLTECT--------PVCLTECTPVCFTKCTPVCLT--ECTPVCLTECTP 551
C C+ P T+C C+ C P + C+ C + C
Sbjct: 210 SECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK-CKN 268
Query: 552 VCFTKCTPVCLT--ECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPI- 608
C + +C P CPS T C C +C T
Sbjct: 269 SRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
Query: 609 CLTECTPICLVL 620
L CT I L
Sbjct: 329 ELRGCTVINGSL 340
Score = 47.6 bits (112), Expect = 2e-05
Identities = 38/191 (19%), Positives = 50/191 (26%), Gaps = 24/191 (12%)
Query: 420 ECTPICLTECTPTCLTECTPICLTECTPVCLTE--CTPVCFTKCTPVCLTECTPICLTEC 477
EC IC + + C T C VC T C T C +EC
Sbjct: 154 ECGDICPGTAKG-KTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 478 TLVCLTKCTPVCFTKCT--------PVCFTKCTPVCFTKCTPICLT--ECTPVCLTECTP 527
C P TKC C C P + C+ C + C
Sbjct: 213 LGNC---SQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK-CKN 268
Query: 528 VCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECT----- 582
C + C+ EC + + T C CP C + +
Sbjct: 269 SRRQGCHQYVIHN--NKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTS 326
Query: 583 PVCFTKCTPIC 593
CT I
Sbjct: 327 AQELRGCTVIN 337
Score = 46.8 bits (110), Expect = 4e-05
Identities = 30/162 (18%), Positives = 41/162 (25%), Gaps = 16/162 (9%)
Query: 340 SCTPICLTECTPICLTECTPICLTE--CTPICLTECTPICLTECTPICLTECTPVCLTEC 397
+ + C T C +C T C T C +EC C
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPD 220
Query: 398 TPIYLTECTP-----ICLTECTPIYLTECTPICLT--ECTPTCLTECTPICLTECTP--- 447
P C C+ C P Y C+ C +C C
Sbjct: 221 DPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFC-QDLHHKCKNSRRQGCHQYVI 279
Query: 448 ---VCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCT 486
C+ EC + + T C C C L+ K
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
Score = 42.2 bits (98), Expect = 0.001
Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 19/170 (11%)
Query: 1 MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECT--------PICLTEC 52
C +C T C T C +EC C P T+C C+ C
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNC---SQPDDPTKCVACRNFYLDGRCVETC 241
Query: 53 TPICLTERTPVCLT--ECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTP 110
P + C+ C + C C + C+ EC Y +
Sbjct: 242 PPPYYHFQDWRCVNFSFCQDLHHK-CKNSRRQGCHQYVIHN--NKCIPECPSGYTMNSSN 298
Query: 111 ICLTECTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLS 160
+ T C C C + + + L CT ++ L +++
Sbjct: 299 LLCTPCLGPCPKVCHLLE---GEKTIDSVTSAQELRGCTVINGSLIINIR 345
Score = 42.2 bits (98), Expect = 0.001
Identities = 31/151 (20%), Positives = 41/151 (27%), Gaps = 11/151 (7%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTP 62
C C P T T + C + C +C T C T
Sbjct: 150 DDNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGL 206
Query: 63 VCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLT--ECTPIC 120
C +EC C P C YL C+ C P Y C+ C +
Sbjct: 207 CCHSECLGNCSQPDDPTKCVACRNFYL---DGRCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 121 LTECTPICLTECTPVCLT--ECTPVCLTECT 149
C C + +C P C + T
Sbjct: 264 HK-CKNSRRQGCHQYVIHNNKCIPECPSGYT 293
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/278 (12%), Positives = 53/278 (19%), Gaps = 10/278 (3%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
L L + P L + E T + P + +
Sbjct: 342 LDFLITGLNGDPWHKIPALDPEKLNVFRTVR--EITGYLNIQSWPPHMHNFSVFSNLTTI 399
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCF 458
L + +T L E + + L + T+
Sbjct: 400 GGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLR-GP 458
Query: 459 TKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPV-CFTKCTPICLTEC 517
T+ VC C+ P C C C
Sbjct: 459 TEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLN 518
Query: 518 TPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLT-ECTPVCPSECTPV 576
CF C P C +C C CP
Sbjct: 519 GEPREFAHEAECF-SCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGV--- 574
Query: 577 CLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECT 614
+ + C C C C L +C
Sbjct: 575 LGAKGPIYKYPDVQNECR-PCHENCTQGCKGPELQDCL 611
Score = 46.6 bits (109), Expect = 5e-05
Identities = 33/250 (13%), Positives = 49/250 (19%), Gaps = 8/250 (3%)
Query: 335 LSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCL 394
T + P + + L + +T L
Sbjct: 368 FRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSL 427
Query: 395 TECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECT 454
E + + L + T+ TE VC C+
Sbjct: 428 KEISAGRIYISANRQLCYHHSLNWTKVLR-GPTEERLDIKHNRPRRDCVAEGKVCDPLCS 486
Query: 455 PVCFTKCTPVCLTECTP-ICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPIC 513
P C C C CF C P C
Sbjct: 487 SGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECF-SCHPECQPMEGTAT 545
Query: 514 LTECTPVCLTECTPVCFTKCTPVCLTECTP-VCLTECTPVCFTKCTPVCLTECTPVCPSE 572
+C P C++ C V + + C C C
Sbjct: 546 CNGSGSDTCAQCAHFRD---GPHCVSSCPHGVLGAKGPIYKYPDVQNECR-PCHENCTQG 601
Query: 573 CTPVCLTECT 582
C L +C
Sbjct: 602 CKGPELQDCL 611
Score = 45.4 bits (106), Expect = 9e-05
Identities = 38/290 (13%), Positives = 62/290 (21%), Gaps = 11/290 (3%)
Query: 341 CTPICLTECTPICLTECTPICLTECTPICLTECTPICLTE-CTPICLTECTPVCLTECTP 399
C +C C +C + T C P C C + C C C+ T+C
Sbjct: 167 CHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQCCHDECAGGCSGPQDTDCFA 226
Query: 400 IYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTP-------VCLTE 452
+ C+ C + L T +C+ C C+
Sbjct: 227 CRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQ-YGGVCVASCPHNFVVDQTSCVRA 285
Query: 453 CTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPI 512
C P + L C P T T +
Sbjct: 286 C-PPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDF 344
Query: 513 CLTECTPVCLTECTPVCFTKCTPVC-LTECTPVCLTECTPVCFTKCTPVCLTECTPVCPS 571
+T + + K + E T + P +
Sbjct: 345 LITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSL 404
Query: 572 ECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLL 621
L + T L E + L + +
Sbjct: 405 YNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKV 454
Score = 45.0 bits (105), Expect = 1e-04
Identities = 29/275 (10%), Positives = 46/275 (16%), Gaps = 4/275 (1%)
Query: 343 PICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYL 402
P E L C P T T + + +
Sbjct: 287 PPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLI 346
Query: 403 TECTPICLTECTPIYLTECTPIC-LTECTPTCLTECTPICLTECTPVCLTECTPVCFTKC 461
T + + + + E T + P + +
Sbjct: 347 TGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYN 406
Query: 462 TPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVC 521
L + +T L + + + TE
Sbjct: 407 RGFSLLIMKNLNVTSLGFRSLKEISA-GRIYISANRQLCYHHSLNWTKVLRGPTEERLDI 465
Query: 522 LTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPV-CLTECTPVCPSECTPVCLTE 580
VC C+ P C C C
Sbjct: 466 KHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFA 525
Query: 581 CTPVCFTKCTPICLTECTPVCFTKCTPICLTECTP 615
CF C P C +C
Sbjct: 526 HEAECF-SCHPECQPMEGTATCNGSGSDTCAQCAH 559
Score = 43.9 bits (102), Expect = 3e-04
Identities = 28/289 (9%), Positives = 50/289 (17%), Gaps = 15/289 (5%)
Query: 341 CTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPI 400
C C + + L P E +
Sbjct: 308 CPKACEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNV 367
Query: 401 Y--LTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTP--- 455
+ + E T + P ++ + L + +T
Sbjct: 368 FRTVREITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSL 427
Query: 456 VCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLT 515
+ + + + C P+C +
Sbjct: 428 KEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSS 487
Query: 516 ECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTP 575
C C + C C C C P C
Sbjct: 488 GG---CWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAEC-FSCHPECQPMEGT 543
Query: 576 VCLTECTPVCFTKC-----TPICLTECTP-VCFTKCTPICLTECTPICL 618
+C P C++ C V K + C
Sbjct: 544 ATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECR 592
Score = 42.7 bits (99), Expect = 7e-04
Identities = 28/276 (10%), Positives = 48/276 (17%), Gaps = 4/276 (1%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
C+ C P E L C P T T + +
Sbjct: 282 CVRAC-PPDKMEVDKNGLKMCEPCGGLCPKACEGTGSGSRFQTVDSSNIDGFVNCTKILG 340
Query: 405 CTPICLTECTPIYLTECTPICLTECTP-TCLTECTPICLTECTPVCLTECTPVCFTKCTP 463
+T + + + + E T + P + +
Sbjct: 341 NLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGYLNIQSWPPHMHNFSVFSNLTTIG 400
Query: 464 VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLT 523
L + +T + + + T
Sbjct: 401 GRSLYNRGFSLLIMKNLNVTSLGFRSLKEISA-GRIYISANRQLCYHHSLNWTKVLRGPT 459
Query: 524 ECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPV-CPSECTPVCLTECT 582
E VC C+ P C C C
Sbjct: 460 EERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNG 519
Query: 583 PVCFTKCTPICLTECTPVCFTKCTPICLTECTPICL 618
C + + T C + C
Sbjct: 520 EPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCA 555
Score = 41.6 bits (96), Expect = 0.001
Identities = 34/283 (12%), Positives = 55/283 (19%), Gaps = 15/283 (5%)
Query: 348 ECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTP 407
E P + +C+ C P C+ C P E L C P
Sbjct: 254 EPNPHTKYQYGGVCVASC-PHNFVVDQTSCVRAC-PPDKMEVDKNGLKMCEPCGGLCPKA 311
Query: 408 ICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVC-L 466
T + T + T + +T + + K +
Sbjct: 312 CEGTGSGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTV 371
Query: 467 TECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECT 526
E T + + + + +T L E +
Sbjct: 372 REITGYLNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEIS 431
Query: 527 P-------VCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLT 579
TE VC C+
Sbjct: 432 AGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCW 491
Query: 580 ECTPVCFTKCTP-----ICLTECTPVCFTKCTPICLTECTPIC 617
P C +C+T C + EC
Sbjct: 492 GPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCH 534
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/273 (12%), Positives = 55/273 (20%), Gaps = 8/273 (2%)
Query: 344 ICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLT 403
I I + + C C +C C +C + T C P C C
Sbjct: 147 IVRDRDAEIVVKDNGRSC-PPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPN 205
Query: 404 E-CTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCT 462
+ C C C+ T+C + C+ C + L +
Sbjct: 206 QCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPHTKYQYGG 265
Query: 463 PVCLTECTPICL--TECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPV 520
+ + T C C V C +C C
Sbjct: 266 VCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLK--MCEPCGGLCPKACEGTGSGSRFQT 323
Query: 521 CLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTE 580
+ + + L P L V E T +
Sbjct: 324 VDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVR--EITGYLNIQ 381
Query: 581 CTPVCFTKCTPICLTECTPVCFTKCTPICLTEC 613
P + L
Sbjct: 382 SWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIM 414
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/228 (13%), Positives = 47/228 (20%), Gaps = 8/228 (3%)
Query: 400 IYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFT 459
I + E P C C C + C T +C +C CF
Sbjct: 142 IDWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFG 201
Query: 460 KCTPVCLTECTPICLTECTLVCLTKCTPV-----CFTKCTPVCFTKCTPVCFTKCTPICL 514
C + + C C +C P
Sbjct: 202 PNPNQCCHDECAGGCSGPQDTDCFACRHFNDSGACVPRCPQPLVYNKLTFQLEPN-PHTK 260
Query: 515 TECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECT 574
+ VC+ C P F C+ C P E C P +
Sbjct: 261 YQYGGVCVASC-PHNFVVDQTSCVRAC-PPDKMEVDKNGLKMCEPCGGLCPKACEGTGSG 318
Query: 575 PVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLS 622
T + + T + + L+
Sbjct: 319 SRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLN 366
Score = 35.4 bits (80), Expect = 0.11
Identities = 26/201 (12%), Positives = 40/201 (19%), Gaps = 9/201 (4%)
Query: 327 LSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICL 386
+++L F SL + + +
Sbjct: 419 VTSLGFRSLKEISAGRIYISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEG 478
Query: 387 TECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECT 446
C P+C + CL+ C C C C
Sbjct: 479 KVCDPLCSSGG---CWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAEC-FSCH 534
Query: 447 PVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTP-VCFTKCTPVCFTKCTPVC 505
P C +C C++ C V K + C
Sbjct: 535 PECQPMEGTATCNGSGSDTCAQCAHFRDGP---HCVSSCPHGVLGAKGPIYKYPDVQNEC 591
Query: 506 FTKCTPICLTECTPVCLTECT 526
C C C L +C
Sbjct: 592 -RPCHENCTQGCKGPELQDCL 611
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/147 (15%), Positives = 34/147 (23%), Gaps = 5/147 (3%)
Query: 4 CTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPV 63
E P C C C + C T IC +C C
Sbjct: 147 IVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQ 206
Query: 64 CLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTE 123
C + + C + C+ C + L P +
Sbjct: 207 CCHDECAGGCSGPQDTDCFACRHFNDSG---ACVPRCPQPLVYNKLTFQLEPN-PHTKYQ 262
Query: 124 CTPICLTECTPVCLTECTPVCLTECTP 150
+C+ C P C+ C P
Sbjct: 263 YGGVCVASC-PHNFVVDQTSCVRACPP 288
Score = 29.2 bits (64), Expect = 9.9
Identities = 24/147 (16%), Positives = 32/147 (21%), Gaps = 9/147 (6%)
Query: 4 CTPICLTECTPVCLTECTPICL-TECTPVCLTECTPICLTECTPICLTECTPICLTERTP 62
C P+C C +C +C+T C + R
Sbjct: 465 IKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQCLSCRNYSRGGVCVTHCNFLNGEPREF 524
Query: 63 VCLTECTPICLTECTPVCLTECTPVYLTECT--------PVCLTECTPIYLTECTPICLT 114
EC C C P C++ C L PI
Sbjct: 525 AHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKY 584
Query: 115 ECTPICLTECTPICLTECTPVCLTECT 141
C C C L +C
Sbjct: 585 PDVQNECRPCHENCTQGCKGPELQDCL 611
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 49.6 bits (117), Expect = 5e-06
Identities = 38/231 (16%), Positives = 53/231 (22%), Gaps = 24/231 (10%)
Query: 421 CTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCF------TKCTPVCLTECTPICL 474
P C CT C E C C +C C C CT
Sbjct: 164 ECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGCTGPTQ 223
Query: 475 TECTL--------VCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTP------- 519
+C VC +C P+ T + P C+ EC
Sbjct: 224 KDCIACKNFFDEGVCKEECPPMRKYNPTTYV-LETNPEGKYAYGATCVKECPGHLLRDNG 282
Query: 520 VCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLT 579
C+ C P C+ P T CT + +
Sbjct: 283 ACVRSC-PQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRILDQTF 341
Query: 580 ECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPLFVLLS 630
+ T + + E T + + P F LS
Sbjct: 342 SGFQDVYANYTMGPRYIPLDPERLEVFS-TVKEITGYLNIEGTHPQFRNLS 391
Score = 47.3 bits (111), Expect = 2e-05
Identities = 46/292 (15%), Positives = 63/292 (21%), Gaps = 18/292 (6%)
Query: 336 SAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICL------TECTPICLTEC 389
+AP P C CT C E C C +C C C C
Sbjct: 159 TAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKPRECCHLFCAGGC 218
Query: 390 TPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTP-- 447
T +C +C EC P+ T L E P C+ EC
Sbjct: 219 TGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVL-ETNPEGKYAYGATCVKECPGHL 277
Query: 448 -----VCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCT 502
C+ C P C+ P T + L F CT +
Sbjct: 278 LRDNGACVRSC-PQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCTVIDGNIRI 336
Query: 503 PVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFT--KCTPV 560
T + + E T E T F
Sbjct: 337 LDQTFSGFQDVYANYTMGPRYIPLDPERLEVFS-TVKEITGYLNIEGTHPQFRNLSYFRN 395
Query: 561 CLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTE 612
T + + + + V +C
Sbjct: 396 LETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVS 447
Score = 44.2 bits (103), Expect = 2e-04
Identities = 37/268 (13%), Positives = 50/268 (18%), Gaps = 15/268 (5%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
++ T P C CT C E C C +C
Sbjct: 145 IVSNGTDAYYNYDFTAP-ERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYG 203
Query: 405 CTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPV 464
P C C CT +C VC EC P+ T
Sbjct: 204 PKPRE----------CCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTY 253
Query: 465 CLTECTPICLTECTLVCLTKCTPVCFT---KCTPVCFTKCTPVCFTKCTPICLTECTPVC 521
L E P C+ +C C C T
Sbjct: 254 VL-ETNPEGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPG 312
Query: 522 LTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTEC 581
+T + + L + + E V T
Sbjct: 313 VTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVK 372
Query: 582 TPVCFTKCTPICLTECTPVCFTKCTPIC 609
+ F I
Sbjct: 373 EITGYLNIEGTHPQFRNLSYFRNLETIH 400
Score = 43.5 bits (101), Expect = 3e-04
Identities = 28/133 (21%), Positives = 36/133 (27%), Gaps = 4/133 (3%)
Query: 481 CLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTE 540
++ T + + P C CT C E C C +C
Sbjct: 145 IVSNGTDAYYNYDFTAP-ERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYG 203
Query: 541 CTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPV 600
P C C CT +C VC EC P+ T L E P
Sbjct: 204 PKPRE--CCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVL-ETNPE 260
Query: 601 CFTKCTPICLTEC 613
C+ EC
Sbjct: 261 GKYAYGATCVKEC 273
Score = 39.6 bits (91), Expect = 0.006
Identities = 36/286 (12%), Positives = 56/286 (19%), Gaps = 15/286 (5%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
+ E P C+ EC P L C+ C P + C+ P T
Sbjct: 253 YVLETNPEGKYAYGATCVKEC-PGHLLRDNGACVRSC-PQDKMDKGGECVPCNGPCPKTC 310
Query: 405 CTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTP- 463
L CT I T +
Sbjct: 311 PGVTVLHAGNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFST 370
Query: 464 -VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCL 522
+T I T L+ T + + E +
Sbjct: 371 VKEITGYLNIEGTHPQFRNLS-YFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQ 429
Query: 523 TECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVC----- 577
V +C + P + + C+ C
Sbjct: 430 ISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGC 489
Query: 578 ----LTECTPVCFTKCTPICLTECTPVCFT-KCTPICLTECTPICL 618
+C C+ +C + K C P C
Sbjct: 490 WGAGTDQCLNCKNFNFNGTCIADCGYISNAYKFDNRTCKICHPECR 535
Score = 39.2 bits (90), Expect = 0.007
Identities = 43/308 (13%), Positives = 60/308 (19%), Gaps = 35/308 (11%)
Query: 341 CTPICLTECTPICLTECTP--------ICLTECTPICLTECTPICLTECTPICLTECTPV 392
C C CT +C +C EC P+ T L E P
Sbjct: 210 CHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVL-ETNPEGKYAYGAT 268
Query: 393 CLTECTPIYLT---ECTPIC-----------LTECTPIYLTECTPICLTECTPTCLTECT 438
C+ EC L C C + P T L CT
Sbjct: 269 CVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCT 328
Query: 439 PICLTECTPVCLTECTPVCFTKCTPVCLTECTPI-------CLTECTLVCLTKCTPVCFT 491
I + T + E T + T F
Sbjct: 329 VIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFR 388
Query: 492 --KCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTEC 549
T + + E + V + +C
Sbjct: 389 NLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSN 448
Query: 550 TPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPIC 609
+ P ++ T C+ C C T C
Sbjct: 449 IRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDG---CWGAGTDQCLNCKNFNF 505
Query: 610 LTECTPIC 617
C C
Sbjct: 506 NGTCIADC 513
Score = 35.0 bits (79), Expect = 0.17
Identities = 32/147 (21%), Positives = 39/147 (26%), Gaps = 20/147 (13%)
Query: 2 EKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERT 61
E+ P C CT C E C C +C P
Sbjct: 162 ERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYGPKP-----RECCH----- 211
Query: 62 PVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICL 121
C CT +C C + VC EC P+ T L E P
Sbjct: 212 LFCAGGCTGPTQKDC-----IACKNFFDEG---VCKEECPPMRKYNPTTYVL-ETNPEGK 262
Query: 122 TECTPICLTECTPVCLTECTPVCLTEC 148
C+ EC P L C+ C
Sbjct: 263 YAYGATCVKEC-PGHLLRDNGACVRSC 288
Score = 33.4 bits (75), Expect = 0.39
Identities = 32/279 (11%), Positives = 51/279 (18%), Gaps = 5/279 (1%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
+ P L C+ C P + C+ P T L CT
Sbjct: 270 VKECPGHLLRDNGACVRSC-PQDKMDKGGECVPCNGPCPKTCPGVTVLHAGNIDSFRNCT 328
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCF 458
I T E + E T E T F
Sbjct: 329 VIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFS-TVKEITGYLNIEGTHPQF 387
Query: 459 T--KCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTE 516
T + + + + + V +C
Sbjct: 388 RNLSYFRNLETIHGRQLMESMFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVS 447
Query: 517 CTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFT-KCTPVCLTECTPVCPSECTP 575
+ P + T C+ C C +C
Sbjct: 448 NIRWPAIQKEPEQKVWVNENLRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFNG 507
Query: 576 VCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECT 614
C+ +C + + C C
Sbjct: 508 TCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQ 546
Score = 30.4 bits (67), Expect = 3.7
Identities = 24/132 (18%), Positives = 29/132 (21%), Gaps = 10/132 (7%)
Query: 24 CLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTECTPVCLTE 83
++ T P C CT C E C C +C
Sbjct: 145 IVSNGTDAYYNYDFTAP-ERECPKCHESCTHGCWGEGPKNCQKFSKLTCSPQCAGGRCYG 203
Query: 84 CTPVYLTECTPVCLTECTPIYLTECTP----ICLTECTPICLTECTPICLT---ECTPVC 136
P C C CT +C C C T E P
Sbjct: 204 PKPR--ECCHLFCAGGCTGPTQKDCIACKNFFDEGVCKEECPPMRKYNPTTYVLETNPEG 261
Query: 137 LTECTPVCLTEC 148
C+ EC
Sbjct: 262 KYAYGATCVKEC 273
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 48.7 bits (115), Expect = 8e-06
Identities = 31/204 (15%), Positives = 48/204 (23%), Gaps = 11/204 (5%)
Query: 341 CTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPI 400
C C P T T + C + C +C T C T
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGLC 207
Query: 401 YLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTP--ICLTECTPVCLTECTPVCF 458
+EC C P C L C+ C P + V + C +
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLD---GRCVETCPPPYYHFQDWRCVNFSFCQDLHH 264
Query: 459 TKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECT 518
C C + C+ +C + + T C C C + +
Sbjct: 265 K-CKNSRRQGCHQYVIHNNK--CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
Query: 519 PVCLTECTPVCFTKCTPVCLTECT 542
+ T +
Sbjct: 322 DSVTSAQELRGCTVINGSLIINIR 345
Score = 48.3 bits (114), Expect = 1e-05
Identities = 36/189 (19%), Positives = 48/189 (25%), Gaps = 18/189 (9%)
Query: 445 CTPVCLTECTPVCFTKCTPVCLTECTPICLTECT--LVCLTKCTPVCFTKCTPVCFTKCT 502
C C P T T + C C C +C + C
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCH 209
Query: 503 PVCFTKCT-PICLTECT--------PVCLTECTPVCFTKCTPVCLT--ECTPVCLTECTP 551
C C+ P T+C C+ C P + C+ C + C
Sbjct: 210 SECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK-CKN 268
Query: 552 VCFTKCTPVCLT--ECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCT-PI 608
C + +C P CPS T C C +C T
Sbjct: 269 SRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
Query: 609 CLTECTPIC 617
L CT I
Sbjct: 329 ELRGCTVIN 337
Score = 46.0 bits (108), Expect = 6e-05
Identities = 28/180 (15%), Positives = 42/180 (23%), Gaps = 6/180 (3%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTP 399
+ + C +C T C T C +EC C P C
Sbjct: 171 ATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN 230
Query: 400 IYLTECTPICLTECTPIYLTECTPICLTECT-PTCLTECTPICLTECTPVCLTECTPVCF 458
YL C+ C P Y C+ +C C + C
Sbjct: 231 FYL---DGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNK--CI 285
Query: 459 TKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECT 518
+C + + T C C C + K + T +
Sbjct: 286 PECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIR 345
Score = 45.2 bits (106), Expect = 1e-04
Identities = 33/209 (15%), Positives = 48/209 (22%), Gaps = 10/209 (4%)
Query: 400 IYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFT 459
I L + + P T T + C + C VC T C T
Sbjct: 145 IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCT 202
Query: 460 KCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLT--EC 517
C +EC C C C C P + C+ C
Sbjct: 203 AEGLCCHSECLGNCSQPDDPTKCVACRNFYL---DGRCVETCPPPYYHFQDWRCVNFSFC 259
Query: 518 TPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVC 577
+ C C + C+ EC + + T C CP C +
Sbjct: 260 QDLHHK-CKNSRRQGCHQYVIHNNK--CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLE 316
Query: 578 LTECTPVCFTKCTPICLTECTPVCFTKCT 606
+ + T
Sbjct: 317 GEKTIDSVTSAQELRGCTVINGSLIINIR 345
Score = 44.5 bits (104), Expect = 2e-04
Identities = 33/204 (16%), Positives = 48/204 (23%), Gaps = 11/204 (5%)
Query: 381 CTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPI 440
C C P T T + C + C +C T C T
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGLC 207
Query: 441 CLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTEC--TLVCLTKCTPVCFTKCTPVCF 498
C +EC C P C L C+ C V F+ C +
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLD---GRCVETCPPPYYHFQDWRCVNFSFCQDLHH 264
Query: 499 TKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCT 558
C C + C+ EC + + T C C C + K
Sbjct: 265 K-CKNSRRQGCHQYVIHNNK--CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTI 321
Query: 559 PVCLTECTPVCPSECTPVCLTECT 582
+ + +
Sbjct: 322 DSVTSAQELRGCTVINGSLIINIR 345
Score = 43.3 bits (101), Expect = 4e-04
Identities = 33/179 (18%), Positives = 48/179 (26%), Gaps = 13/179 (7%)
Query: 453 CTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPI 512
C C P T T + +C + C VC T C T
Sbjct: 151 DNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGLC 207
Query: 513 CLTECTPVCLTECTPVCFTKCTPV-----CLTECTP--VCLTECTPVCFTKCTPVCLTEC 565
C +EC C P C C+ C P + V F+ C + C
Sbjct: 208 CHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHK-C 266
Query: 566 TPVCPSECTPVCLT--ECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLS 622
C + +C P C + T C C +C + ++
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVT 325
Score = 37.9 bits (87), Expect = 0.018
Identities = 29/175 (16%), Positives = 46/175 (26%), Gaps = 10/175 (5%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTP-----ICLTECTP--I 55
C +C T C T C +EC C P C C+ C P
Sbjct: 187 HCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYY 246
Query: 56 CLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTE 115
+ V + C + C C + C+ EC Y + + T
Sbjct: 247 HFQDWRCVNFSFCQDLHHK-CKNSRRQGCHQYVIHNNK--CIPECPSGYTMNSSNLLCTP 303
Query: 116 CTPICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSLSAPLSVLLSAL 170
C C C + + + T + + + L + L
Sbjct: 304 CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANL 358
Score = 37.5 bits (86), Expect = 0.021
Identities = 30/146 (20%), Positives = 39/146 (26%), Gaps = 11/146 (7%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTP 62
C C P T T + C + C +C T C T
Sbjct: 150 DDNEECGDIC-PGTAKGKTNCPATVINGQFVERCW--THSHCQKVCPTICKSHGCTAEGL 206
Query: 63 VCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLT--ECTPIC 120
C +EC C P C YL C+ C P Y C+ C +
Sbjct: 207 CCHSECLGNCSQPDDPTKCVACRNFYL---DGRCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 121 LTECTPICLTECTPVCLT--ECTPVC 144
C C + +C P C
Sbjct: 264 HK-CKNSRRQGCHQYVIHNNKCIPEC 288
Score = 35.2 bits (80), Expect = 0.13
Identities = 24/135 (17%), Positives = 34/135 (25%), Gaps = 13/135 (9%)
Query: 496 VCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTP--VCLTECTPVCLTECTPVC 553
V C C P T T +C C C +C +
Sbjct: 146 VLNKDDNEECGDIC-PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAE 204
Query: 554 FTKCTPVCLTECT-PVCPSECT--------PVCLTECTPVCFTKCTPICLTECT-PVCFT 603
C CL C+ P P++C C+ C P + C+
Sbjct: 205 GLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHH 264
Query: 604 KCTPICLTECTPICL 618
KC C +
Sbjct: 265 KCKNSRRQGCHQYVI 279
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 48.3 bits (114), Expect = 1e-05
Identities = 29/203 (14%), Positives = 44/203 (21%), Gaps = 13/203 (6%)
Query: 353 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTE 412
L + + P E P+C C +C +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCW-TTNRCQKMCPST 188
Query: 413 CTPIYLTECTPICLTECTPTCLTECTPICLTECTPV-----CLTECTPVCFTKCTPVCLT 467
C TE C EC +C C C+ C P + C+
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVD 248
Query: 468 ECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTP 527
++ F C +C + C P
Sbjct: 249 -----RDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGS--QSMYCIPCEGPCPKV 301
Query: 528 VCFTKCTPVCLTECTPVCLTECT 550
K T + + L CT
Sbjct: 302 CEEEKKTKTIDSVTSAQMLQGCT 324
Score = 47.5 bits (112), Expect = 2e-05
Identities = 30/199 (15%), Positives = 47/199 (23%), Gaps = 21/199 (10%)
Query: 433 CLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTK 492
L + + P + P+C +C +C +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTT-NRCQKMCPST 188
Query: 493 CTPVCFTKCTPVCFTKCTPICL-----TECT--------PVCLTECTPVCFTKCTPVCLT 539
C T+ C +C C T C VC+ C P + C+
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVD 248
Query: 540 ECTPVCLTECTPVCFTKCTPVCLT--ECTPVCPS--ECTPVCLTECTPVCFTKCTPICLT 595
C + + EC CPS C P
Sbjct: 249 RDF--CAN-ILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEE 305
Query: 596 ECTPVCFTKCTPICLTECT 614
+ T + + L CT
Sbjct: 306 KKTKTIDSVTSAQMLQGCT 324
Score = 46.0 bits (108), Expect = 6e-05
Identities = 30/201 (14%), Positives = 46/201 (22%), Gaps = 9/201 (4%)
Query: 393 CLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTE 452
L + Y+ P E P+C T C +C +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEK-TTINNEYNYRCWTTNRCQKMCPST 188
Query: 453 CTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPI 512
C T+ C EC C C + VC C P +
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYA---GVCVPACPPNTYRFEGWR 245
Query: 513 CLTE---CTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVC 569
C+ + F C+ EC + + C P
Sbjct: 246 CVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGS--QSMYCIPCEGPCPKVCE 303
Query: 570 PSECTPVCLTECTPVCFTKCT 590
+ T + + CT
Sbjct: 304 EEKKTKTIDSVTSAQMLQGCT 324
Score = 41.4 bits (96), Expect = 0.002
Identities = 25/168 (14%), Positives = 39/168 (23%), Gaps = 12/168 (7%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTP 399
T C +C + C TE C EC C C
Sbjct: 164 KTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRH 223
Query: 400 IYLTECTPICLTECTPIYLTECTPICLT-----ECTPTCLTECTPICLTECTPVCLTECT 454
Y +C+ C P C+ ++ + + C+ EC
Sbjct: 224 YYY---AGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGE--CMQECP 278
Query: 455 PVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCT 502
+ C P + K T + + CT
Sbjct: 279 SGFIRNGS--QSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCT 324
Score = 40.2 bits (93), Expect = 0.004
Identities = 28/200 (14%), Positives = 46/200 (23%), Gaps = 20/200 (10%)
Query: 343 PICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYL 402
+ P + P E P+C C +C + C
Sbjct: 137 NYIVGNKPPKECGDLCPGT-MEEKPMCEKTTINNEYNYRCWTT-NRCQKMCPSTCGKRAC 194
Query: 403 TECTPICLTECTPIYLTECTPICLTECT--------PTCLTECTPICLTECTPVCLTECT 454
TE C EC + P T C C+ C P C+
Sbjct: 195 TENNECCHPECLG---SCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDF 251
Query: 455 PVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICL 514
C ++ + + C+ +C + C P
Sbjct: 252 --CAN-ILSAESSDSEGFVIHDGE--CMQECPSGFIRNGS--QSMYCIPCEGPCPKVCEE 304
Query: 515 TECTPVCLTECTPVCFTKCT 534
+ T + + CT
Sbjct: 305 EKKTKTIDSVTSAQMLQGCT 324
Score = 36.7 bits (84), Expect = 0.035
Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 12/162 (7%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTP-----ICLTECTPICL 57
+C +C + C TE C EC C C +C+ C P
Sbjct: 180 RCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTY 239
Query: 58 TERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECT 117
C+ C ++ + + C+ EC ++ + C
Sbjct: 240 RFEGWRCVDRDF--CAN-ILSAESSDSEGFVIHDGE--CMQECPSGFIRNGS--QSMYCI 292
Query: 118 PICLTECTPICLTECTPVCLTECTPVCLTECTPVSALLFVSL 159
P + T + + L CT L +++
Sbjct: 293 PCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINI 334
Score = 34.8 bits (79), Expect = 0.16
Identities = 25/148 (16%), Positives = 37/148 (25%), Gaps = 10/148 (6%)
Query: 1 MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTER 60
+ P + P E P+C C +C + C TE
Sbjct: 140 VGNKPPKECGDLCPGT-MEEKPMCEKTTINNEYNYRCWTT-NRCQKMCPSTCGKRACTEN 197
Query: 61 TPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPIC 120
C EC C C Y VC+ C P C+ C
Sbjct: 198 NECCHPECLGSCSAPDNDTACVACRHYYY---AGVCVPACPPNTYRFEGWRCVDRDF--C 252
Query: 121 LTECTPICLTECTPVCLTECTPVCLTEC 148
++ + + C+ EC
Sbjct: 253 AN-ILSAESSDSEGFVIHDGE--CMQEC 277
Score = 31.7 bits (71), Expect = 1.3
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 12/149 (8%)
Query: 338 PLSCTPICLTECTPICLTECTPICLTECTPICLTECTP-----ICLTECTPICLTECTPV 392
P +C TE C EC C C +C+ C P
Sbjct: 186 PSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWR 245
Query: 393 CLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTE 452
C+ + ++ + + C+ EC + + C P
Sbjct: 246 CVDRD---FCANILSAESSDSEGFVIHDGE--CMQECPSGFIRNGS--QSMYCIPCEGPC 298
Query: 453 CTPVCFTKCTPVCLTECTPICLTECTLVC 481
K T + + L CT+
Sbjct: 299 PKVCEEEKKTKTIDSVTSAQMLQGCTIFK 327
Score = 31.0 bits (69), Expect = 2.7
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 1/81 (1%)
Query: 537 CLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTE 596
L + + P E P+C +C +C +
Sbjct: 130 ILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCW-TTNRCQKMCPST 188
Query: 597 CTPVCFTKCTPICLTECTPIC 617
C T+ C EC C
Sbjct: 189 CGKRACTENNECCHPECLGSC 209
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/269 (14%), Positives = 63/269 (23%), Gaps = 8/269 (2%)
Query: 340 SCTPICLTECTPICLT-ECTPICLTECTPICLTECTPICLTECTPI-CLTECTPVCLTEC 397
I + E T + P +T+ + L L
Sbjct: 348 GIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSG 407
Query: 398 TPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVC 457
+ + + +T L E + + + L I T + +
Sbjct: 408 LSLLILKQQ--GITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTI-NQRIVIR 464
Query: 458 FTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTEC 517
+ C E + C C + C C E
Sbjct: 465 DNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFEN 524
Query: 518 TPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVC 577
+C+ EC P C K LT C CT K P C+ +C + +
Sbjct: 525 DSICV-ECDPQC-EKMEDGLLT-CHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIF 581
Query: 578 LTECTPVCFTKCTPICLTECTPVCFTKCT 606
C P C C C
Sbjct: 582 KYADPDRECHPCHPNCTQGCNGPTSHDCI 610
Score = 47.7 bits (112), Expect = 2e-05
Identities = 32/248 (12%), Positives = 59/248 (23%), Gaps = 5/248 (2%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPI-CLTECTPICLTECTPICLTECTPVCLTEC 397
+ E T + P +T+ + L L + + + + +
Sbjct: 364 KLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQF 423
Query: 398 TPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVC 457
+ I +T+ + + T E C +C
Sbjct: 424 QSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC 483
Query: 458 FTK-CTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTP--ICL 514
+ C +C +C+ C + C C +C L
Sbjct: 484 SSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVE-CDPQCEKMEDGL 542
Query: 515 TECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECT 574
C CT K P C+ +C + + C P C C
Sbjct: 543 LTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCN 602
Query: 575 PVCLTECT 582
+C
Sbjct: 603 GPTSHDCI 610
Score = 46.6 bits (109), Expect = 4e-05
Identities = 27/276 (9%), Positives = 56/276 (20%), Gaps = 10/276 (3%)
Query: 343 PICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYL 402
P L + + L +
Sbjct: 307 PKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLN 366
Query: 403 TECTPICLTECTPIYLTECTPICLT------ECTPTCLTECTPICLTECTPVCLTECTPV 456
T +T I + L + + + + + +
Sbjct: 367 VFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSL 426
Query: 457 CFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTE 516
+ +T+ + +C T + C +C ++
Sbjct: 427 KEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSD 486
Query: 517 -CTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPS--EC 573
C +C +C+ C + C C +C + C
Sbjct: 487 GCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVE-CDPQCEKMEDGLLTC 545
Query: 574 TPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPIC 609
CT K P C+ +C + I
Sbjct: 546 HGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIF 581
Score = 46.2 bits (108), Expect = 5e-05
Identities = 42/299 (14%), Positives = 71/299 (23%), Gaps = 16/299 (5%)
Query: 326 LLSALLFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLT-ECTPICLTECTPI 384
L+SA S + + +T I + E T
Sbjct: 318 LMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGF 377
Query: 385 CLTECTPVCLTECTPI-YLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLT 443
+ P +T+ + L L + + + I + I +T
Sbjct: 378 LNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYIT 437
Query: 444 ECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTP 503
+ + +C T E C +C + C+
Sbjct: 438 DNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDG---CWGPGPD 494
Query: 504 VCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLT 563
C + C C + +C+ EC P C T C
Sbjct: 495 QCLSCRRFSRGRICIESCNLYDGEFREFENDSICV-ECDPQCEK-MEDGLLT-CHGPGPD 551
Query: 564 ECTPVCPSECTPVCLTECTPVCFTKCTPICLT--------ECTPVCFTKCTPICLTECT 614
CT + P C+ +C + I C P C C +C
Sbjct: 552 NCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCI 610
Score = 46.2 bits (108), Expect = 5e-05
Identities = 36/296 (12%), Positives = 55/296 (18%), Gaps = 15/296 (5%)
Query: 343 PICLTECTPICLTECTPICLTECTPICLTECTPICLT-----ECTPICLTECTPVCLTEC 397
C CT C C T +C +C C C C C+ T+C
Sbjct: 163 GRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCHRECAGGCSGPKDTDC 222
Query: 398 TPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTP-------VCL 450
+ C+T+C P E C+ +C C+
Sbjct: 223 FACMNFNDSGACVTQC-PQTFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCV 281
Query: 451 TECTPVCFTKCTPVCLT--ECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTK 508
C CT IC C + + +
Sbjct: 282 RACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGN 341
Query: 509 CTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPV 568
+ + E T + P T +
Sbjct: 342 LIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGG 401
Query: 569 CPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAP 624
L + + T L S
Sbjct: 402 RVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTI 457
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/286 (9%), Positives = 59/286 (20%), Gaps = 15/286 (5%)
Query: 340 SCTPICLTECTPICLTECTP--------ICLTECTPICLTECTPICLTECTPICLTECTP 391
C C C+ T+C C+T+C P E
Sbjct: 205 CCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC-PQTFVYNPTTFQLEHNFNAKYTYGA 263
Query: 392 VCLTECTPIYL---TECTPICLTECTPIYLTEC-TPICLTECTPTCLTECTPICLTECTP 447
C+ +C ++ + C C + + T+ P L
Sbjct: 264 FCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGIGTGSLMSAQT 323
Query: 448 VCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFT 507
V + L + T T +
Sbjct: 324 VDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSW 383
Query: 508 KCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTP 567
+ + L + + + + + + + +T+ +
Sbjct: 384 PPNMTDFSVFS--NLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSN 441
Query: 568 VCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTEC 613
+C T E C +C ++
Sbjct: 442 LCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDG 487
Score = 42.7 bits (99), Expect = 6e-04
Identities = 27/280 (9%), Positives = 53/280 (18%), Gaps = 10/280 (3%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
+ P E + C P P L + +
Sbjct: 281 VRACPSSKMEVEENGIKMCKPCTDI--CPKACDGIGTGSLMSAQTVDSSNIDKFINCTKI 338
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCF 458
L + T +T I + +
Sbjct: 339 NGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFS--NL 396
Query: 459 TKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECT 518
L + + + + + + + T + +C+ T
Sbjct: 397 VTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFST 456
Query: 519 PVCLTECTPVCFTKCTPVCLTECTPVCLTE-CTPVCFTKCTPVCLTECTPVCPSECTPVC 577
+ C +C ++ C +C +C C
Sbjct: 457 INQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYD 516
Query: 578 LTECTPVCFT---KCTPICLTECTPVCFTKCTPICLTECT 614
+ +C P C T C CT
Sbjct: 517 GEFREFENDSICVECDPQCEK-MEDGLLT-CHGPGPDNCT 554
Score = 42.3 bits (98), Expect = 9e-04
Identities = 26/273 (9%), Positives = 51/273 (18%), Gaps = 13/273 (4%)
Query: 345 CLTECTPICLTECTPICLTECTP---ICLTECTPICLTECTPICLTEC-TPVCLTECTPI 400
E C+ +C + + C C + + T+ P
Sbjct: 249 FQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPK 308
Query: 401 YLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTK 460
L + + L +
Sbjct: 309 ACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVF 368
Query: 461 CTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPI-CLTECTP 519
T +T I + + F+ + +T
Sbjct: 369 RTVREITGFLNIQSWPPNMTDFS-----VFSNLVTIGGRVLYSGLSLLILKQQGITSLQF 423
Query: 520 VCLTECTP--VCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVC 577
L E + + T + +C T E C +C
Sbjct: 424 QSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLC 483
Query: 578 LTE-CTPVCFTKCTPICLTECTPVCFTKCTPIC 609
++ C +C +C C
Sbjct: 484 SSDGCWGPGPDQCLSCRRFSRGRICIESCNLYD 516
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/228 (14%), Positives = 53/228 (23%), Gaps = 9/228 (3%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
L L + + + I + + I +T+ + +C
Sbjct: 395 NLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLF 454
Query: 405 CTPICLTECTPIYLTECTPICLTECTPTCLTE-CTPICLTECTPVCLTECTPVCFTKCTP 463
T E C C ++ C +C +C C
Sbjct: 455 STINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNL 514
Query: 464 VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLT 523
+ C +C P C K T C CT + P C+
Sbjct: 515 YDGEFREFENDSIC-----VECDPQC-EKMEDGLLT-CHGPGPDNCTKCSHFKDGPNCVE 567
Query: 524 ECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPS 571
+C + + C P C C +C P
Sbjct: 568 KCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCI-YYPW 614
Score = 42.0 bits (97), Expect = 0.001
Identities = 38/274 (13%), Positives = 60/274 (21%), Gaps = 11/274 (4%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
++ C C C C + T C C C Y+++
Sbjct: 145 NPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSD 204
Query: 405 -CTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTP 463
C C C+ T+C + C+T+C P E
Sbjct: 205 CCHRECAGGCSGPKDTDCFACMNFNDSGACVTQC-PQTFVYNPTTFQLEHNFNAKYTYGA 263
Query: 464 VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLT 523
C+ +C P + C+ C K C C C T ++
Sbjct: 264 FCVKKC-PHNFVVDSSSCVRACPSSKMEVEENGI--KMCKPCTDICPKACDGIGTGSLMS 320
Query: 524 ECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTP 583
T + T+ + T + E V T
Sbjct: 321 AQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYN------AIEAIDPEKLNVFRTVREI 374
Query: 584 VCFTKCTPICLTECTPVCFTKCTPICLTECTPIC 617
F F+ I
Sbjct: 375 TGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGL 408
Score = 29.6 bits (65), Expect = 6.1
Identities = 25/145 (17%), Positives = 35/145 (24%), Gaps = 7/145 (4%)
Query: 3 KCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTP 62
+ C E + C CL+ C C E
Sbjct: 467 RKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDS 526
Query: 63 VCLTECTPICLT------ECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTEC 116
+C+ EC P C C CT + P C+ +C + I
Sbjct: 527 ICV-ECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKCPDGLQGANSFIFKYAD 585
Query: 117 TPICLTECTPICLTECTPVCLTECT 141
C P C C +C
Sbjct: 586 PDRECHPCHPNCTQGCNGPTSHDCI 610
Score = 29.2 bits (64), Expect = 8.7
Identities = 17/146 (11%), Positives = 35/146 (23%), Gaps = 2/146 (1%)
Query: 8 CLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTE 67
L L + + + + + + I +T+ + +C
Sbjct: 395 NLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLF 454
Query: 68 CTPICLTECTPVCLTECTPVYLTECTPVCLTE-CTPIYLTECTPICLTECTPICLTECTP 126
T E C +C ++ C +C IC+ C
Sbjct: 455 STINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNL 514
Query: 127 ICLTECTPVCLTECTPVCLTECTPVS 152
+ C C +C +
Sbjct: 515 YDGEFREFENDSICVE-CDPQCEKME 539
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 41.5 bits (96), Expect = 0.002
Identities = 40/278 (14%), Positives = 54/278 (19%), Gaps = 11/278 (3%)
Query: 331 LFVSLSAPLSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTP-ICLTEC 389
L + A + P L + E T L + P T+ L
Sbjct: 345 LHILPVAFRGDSFTHTPPLDPQELDILKTVK--EITGFLLIQAWPENRTDLHAFENLEII 402
Query: 390 TPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVC 449
I + + ++ C T
Sbjct: 403 RGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQ 462
Query: 450 LTECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKC 509
T+ C +C E C C C KC
Sbjct: 463 KTKIISNRGENKCKATGQVCHALCSPEG-------CWGPEPRDCVSCRNVSRGRECVDKC 515
Query: 510 TPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTP-V 568
+ V +EC CT C P C+ C V
Sbjct: 516 KLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGV 575
Query: 569 CPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCT 606
T V C P C CT C
Sbjct: 576 MGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLRGCP 613
Score = 39.6 bits (91), Expect = 0.005
Identities = 31/223 (13%), Positives = 52/223 (23%), Gaps = 7/223 (3%)
Query: 353 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTE 412
L C + C C IC +C+ C C C
Sbjct: 159 HLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRC---RGKSPSDCCHNQCAAG 215
Query: 413 CTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPI 472
CT ++C TC C P+ L T + ++ C+ +C
Sbjct: 216 CTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRN 274
Query: 473 CLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCF--TKCTPICLTECTPVCLTECTPVCF 530
+ C+ C + KC K L+
Sbjct: 275 YVVTDHGSCVRAC-GADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIK 333
Query: 531 TKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSEC 573
++ + FT P+ E + +
Sbjct: 334 HFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKE 376
Score = 39.6 bits (91), Expect = 0.006
Identities = 26/282 (9%), Positives = 51/282 (18%), Gaps = 6/282 (2%)
Query: 341 CTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPI 400
P C+ +C + C+ C E + +C
Sbjct: 255 VNPEGKYSFGATCVKKCPRNYVVTDHGSCVRAC-GADSYEMEEDGVRKCKKCEGPCRKVC 313
Query: 401 YLTECT-PICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCFT 459
+ L TP + + T
Sbjct: 314 NGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKT 373
Query: 460 KCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFT---KCTPVCFTKCTPICLTE 516
L + F+ + +
Sbjct: 374 VKEITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEIS 433
Query: 517 CTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSE-CTP 575
V ++ +C+ T T+ C +C E C
Sbjct: 434 DGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWG 493
Query: 576 VCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPIC 617
+C C+ +C + + +EC
Sbjct: 494 PEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCH 535
Score = 37.3 bits (85), Expect = 0.027
Identities = 37/277 (13%), Positives = 55/277 (19%), Gaps = 5/277 (1%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLT-ECTPVCLTECT 398
C P + + CT I PV +
Sbjct: 297 DGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDS 356
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTP-ICLTECTPVCLTECTPVC 457
+ P L + E T L + P T+ L
Sbjct: 357 FTHTPPLDPQELDILKTVK--EITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHGQFSL 414
Query: 458 FTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTEC 517
+ + V ++ +C+ T TK
Sbjct: 415 AVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENK 474
Query: 518 TPVCLTECTPVCFTK-CTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPV 576
C +C + C +C C KC + V SEC
Sbjct: 475 CKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQC 534
Query: 577 CLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTEC 613
CT C P C+ C
Sbjct: 535 HPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTC 571
Score = 35.8 bits (81), Expect = 0.080
Identities = 27/202 (13%), Positives = 40/202 (19%), Gaps = 4/202 (1%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
+ I + + ++ +C T T+
Sbjct: 416 VVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKC 475
Query: 399 PIYLTECTPICLTE-CTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVC 457
C +C E C +C C+ +C + V +EC
Sbjct: 476 KATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCH 535
Query: 458 FTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTEC 517
CT C P C C C
Sbjct: 536 PECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPA--GVMGENNTLVWKYADAGHVC 593
Query: 518 TPVCLTECTPVCFTKCTPVCLT 539
C CT C C T
Sbjct: 594 HL-CHPNCTYGCTGPGLRGCPT 614
Score = 35.4 bits (80), Expect = 0.11
Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 4/135 (2%)
Query: 16 CLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPVCLTECTPICLTE 75
L C + C C IC +C+ C + C C C
Sbjct: 159 HLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAG 215
Query: 76 CTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPICLTECTPICLTECTPV 135
CT ++C C C P+ L T + + C+ +C
Sbjct: 216 CTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRN 274
Query: 136 CLTECTPVCLTECTP 150
+ C+ C
Sbjct: 275 YVVTDHGSCVRACGA 289
Score = 33.8 bits (76), Expect = 0.36
Identities = 28/220 (12%), Positives = 39/220 (17%), Gaps = 4/220 (1%)
Query: 345 CLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTE 404
L I + + ++ +C
Sbjct: 398 NLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLF 457
Query: 405 CTPICLTECTPIYLTECTPICLTECTPTCLTE-CTPICLTECTPVCLTECTPVCFTKCTP 463
T T+ C C E C +C C KC
Sbjct: 458 GTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKL 517
Query: 464 VCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLT 523
+ + +EC CT C P C+ C
Sbjct: 518 LEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPA--GV 575
Query: 524 ECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLT 563
C C CT C C T
Sbjct: 576 MGENNTLVWKYADAGHVCHL-CHPNCTYGCTGPGLRGCPT 614
Score = 33.5 bits (75), Expect = 0.45
Identities = 22/130 (16%), Positives = 35/130 (26%), Gaps = 5/130 (3%)
Query: 487 PVCFTKCTPVCFTKCTPVCFTKCTP-ICLTECTPVCLTECTPVCFTKCTPVCLTECTPVC 545
C C K T IC +C+ C + C C C CT
Sbjct: 164 QKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPR 220
Query: 546 LTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKC 605
++C + C C P+ T + ++ C+ +C
Sbjct: 221 ESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRNYVVTD 279
Query: 606 TPICLTECTP 615
C+ C
Sbjct: 280 HGSCVRACGA 289
Score = 33.5 bits (75), Expect = 0.45
Identities = 31/295 (10%), Positives = 59/295 (20%), Gaps = 20/295 (6%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTP-----------ICLTECTPICLTECTPICLTE 388
S C+ +C + C+ C C P
Sbjct: 262 SFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEF 321
Query: 389 CTPVCLTECTPIYLTECTPICLT-ECTPIYLTECTPICLTECTPTCLTECTPI-CLTECT 446
+ + + CT I P+ + P L + +T
Sbjct: 322 KDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKEITGFL 381
Query: 447 PVCLTECTPVCFTKCTPVCLTECTPICLTECTLVCLTK------CTPVCFTKCTPVCFTK 500
+ + + + +L ++ + V +
Sbjct: 382 LIQAWPENRTDLHAFENLEIIRGRTKQHGQFSLAVVSLNITSLGLRSLKEISDGDVIISG 441
Query: 501 CTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTE-CTPVCFTKCTP 559
+C+ T T+ C +C E C C
Sbjct: 442 NKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVS 501
Query: 560 VCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECT 614
C +C + V ++C CT C
Sbjct: 502 CRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCI 556
Score = 30.8 bits (68), Expect = 3.1
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 15/153 (9%)
Query: 4 CTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECT--------PICLTECTPI 55
IC +C+ C + C C C CT ++C C C P+
Sbjct: 187 TKIICAQQCSGRCRGKSPSDC---CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPL 243
Query: 56 CLTERTPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTE 115
L T + + C+ +C Y+ C+ C E + +
Sbjct: 244 MLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRNYVVTDHGSCVRACGADS-YEMEEDGVRK 301
Query: 116 CTPICLTECTPICLTECTPVCLTECTPVCLTEC 148
C + + T
Sbjct: 302 CKKCEGPC--RKVCNGIGIGEFKDSLSINATNI 332
Score = 30.8 bits (68), Expect = 3.2
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 5/153 (3%)
Query: 1 MEKCTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTER 60
+ C + C C +C +C+ C + C C C
Sbjct: 160 LGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDC---CHNQCAAGC 216
Query: 61 TPVCLTECTPICLTECTPVCLTECTPVYLTECTPVCLTECTPIYLTECTPICLTECTPIC 120
T ++C C C P+ L T + + C+ +C
Sbjct: 217 TGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGAT-CVKKCPRNY 275
Query: 121 LTECTPICLTECTPVCLTECTPVCLTECTPVSA 153
+ C+ C E + +C
Sbjct: 276 VVTDHGSCVRAC-GADSYEMEEDGVRKCKKCEG 307
Score = 29.6 bits (65), Expect = 6.9
Identities = 23/147 (15%), Positives = 33/147 (22%), Gaps = 9/147 (6%)
Query: 4 CTPICLTECTPVCLTECTPICLTECTPVCLTECTPICLTECTPICLTECTPICLTERTPV 63
+ +C C +C C+ +C + R V
Sbjct: 467 ISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFV 526
Query: 64 CLTECTPICLTECTPVCLTECTPVYLTECT--------PVCLTECTP-IYLTECTPICLT 114
+EC CT C P C+ C + T +
Sbjct: 527 ENSECIQCHPECLPQAMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKY 586
Query: 115 ECTPICLTECTPICLTECTPVCLTECT 141
C P C CT L C
Sbjct: 587 ADAGHVCHLCHPNCTYGCTGPGLRGCP 613
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.002
Identities = 56/340 (16%), Positives = 103/340 (30%), Gaps = 105/340 (30%)
Query: 621 LSAPLFVLLSAPLFVLLSAPLFVSLSAPLFV----LRSALLFVLLSAPLFVLLSAPLSVL 676
L L + L L+ L +F + L + LLS P+S
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAE---KVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 677 LSALL----FV--------SPSAPLFVLLSAPLFV---LLSALLFVL-LSAPLFV--LRS 718
L ++ +V +P L L L++A+ S F +R
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK 298
Query: 719 AL--LF-----------VLLSAPLFVSLS--------APLFVLRSALLFVLLN--ERTRG 755
A+ LF P + S +P+ + + + + +T
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 756 WLMVDSPIPTLAYTLIYLS--------IVTIGP---------RL---------------M 783
L + +S +V+ GP L
Sbjct: 359 HLPAGKQ--------VEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 784 RDRKPYKLTS----ILVPYN--MLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEE 837
+RK K ++ + P++ +L+ A +L I +L+ + + PV +
Sbjct: 410 SERKL-KFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 838 LRLLVAS--TRLKYSYVCQPVTYVNTQEELRVSSYTYHLI 875
LR+L S R+ + PV + E T H++
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKW----ETTTQFKAT-HIL 502
Score = 40.4 bits (94), Expect = 0.004
Identities = 49/274 (17%), Positives = 82/274 (29%), Gaps = 74/274 (27%)
Query: 142 PVCLT----ECT-PVSALLFV-----------SLSAPLSVLLSALLFVSLSAPLSVL-LS 184
P+ L+ E V F L P F + P + L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG------FAADDEPTTPAELV 61
Query: 185 A--LLFVS-------LSAPLSVLLSALL-FV----------SLSAPLSVLLSALLFVSLS 224
L +VS + VL L F +L+A L +L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT----TLV 117
Query: 225 APLSVLLSALLFVSLSA-PLSVLLSALLFVSLSAPLSVLLSALLF-------------VS 270
++ + + ++ P ++ LF ++ + L +F
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRD 175
Query: 271 LSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVS-LSAPLSVLLSA 329
L VL+ L+ S + LS L+ +L A V L + L P +
Sbjct: 176 LYQTYHVLVGDLIKFS-----AETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKD 229
Query: 330 LLFVSLSAPLSCTPICLTECTPICLTECTPICLT 363
L LS P+SC I + + +T + T
Sbjct: 230 YL---LSIPISCPLIGVIQLAHYVVT-AKLLGFT 259
Score = 39.3 bits (91), Expect = 0.009
Identities = 46/238 (19%), Positives = 71/238 (29%), Gaps = 95/238 (39%)
Query: 677 LSALLFVSPSAPLFVLLSA-----PLFVLLSALLFVLLS-APLFVLRSALLFVLLSAPLF 730
++ F S LLSA P AL L+ A L+S L + F
Sbjct: 1714 STSYTFRSEKG----LLSATQFTQP------ALT--LMEKAAFEDLKSKGLIPADAT--F 1759
Query: 731 V--SL---SAPL------FVLRSALLFVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIG 779
SL +A L + S + V RG M +
Sbjct: 1760 AGHSLGEYAA-LASLADVMSIESLVEVV----FYRGMTMQVAV----------------- 1797
Query: 780 PRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEELR 839
PR R Y M A+N + AS +QE L+
Sbjct: 1798 PRDELGRSNYG-----------MIAIN----PGRVAASF---------------SQEALQ 1827
Query: 840 LLVASTRLKYSYVCQPVTYVNTQEELRVSSYTYHLIS--NLAINDCFLQRLDY-KIAN 894
+V + ++ + V Y N V + Y + + A+ D L++ K+
Sbjct: 1828 YVVERVGKRTGWLVEIVNY-N------VENQQY-VAAGDLRAL-DTVTNVLNFIKLQK 1876
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 36.5 bits (83), Expect = 0.043
Identities = 24/234 (10%), Positives = 45/234 (19%), Gaps = 11/234 (4%)
Query: 354 LTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTEC 413
+ +C C C + + LT+ C C P + +
Sbjct: 62 IEKCHD-CSQPCPWPMIEKLPCAALTDRECTCPPGMFQSN-ATCAPHTVCPVGWGVRKKG 119
Query: 414 TPIYLTECTPICLTECTPTCLTECTPICLTECTP---VCLTECTPVCFTKCTPVCLTECT 470
T C + + T+C V + T C + +
Sbjct: 120 TETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSS 179
Query: 471 PICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCF 530
+ + + + + P L+
Sbjct: 180 TSPSPGTA--IFPRPEHMETHEVPSSTYVPKGMNSTESNSS---ASVRPKVLSSIQEGTV 234
Query: 531 TKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVCLTECTPV 584
T V T + PS TP+
Sbjct: 235 PDNTS-SARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSMEATGGEKSSTPI 287
Score = 34.5 bits (78), Expect = 0.14
Identities = 32/240 (13%), Positives = 48/240 (20%), Gaps = 21/240 (8%)
Query: 403 TECTPICLTECTP----------IYLTECTPICLTECTPT-CLTECTPICLTECTPVCLT 451
CT L C+ + +C P C + ECT
Sbjct: 37 EHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGM 96
Query: 452 ECTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTP 511
+ T + TE V +C F+ KC T C
Sbjct: 97 FQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSV-MKCKAY--TDCLS 153
Query: 512 ICLTE---CTPVCLTECTPVC---FTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTEC 565
L T C + + E V + P +
Sbjct: 154 QNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMNST 213
Query: 566 TPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECTPICLVLLSAPL 625
+ P L+ T V T + + L
Sbjct: 214 ESNSSASVRPKVLSSIQEGTVPDNTS-SARGKEDVNKTLPNLQVVNHQQGPHHRHILKLL 272
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding,
nucleotidyltransferase, covalent protein-RNA linkage,
RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A
2uut_A
Length = 515
Score = 36.7 bits (84), Expect = 0.048
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 898 WYYFSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNS 957
+ L + F + L + + ++ +PSG ++VNS
Sbjct: 252 PAVTAASLAILERFAEPHPIVSCAIEALSSPAEGYVNDIKFVTRGGLPSGM-PFTSVVNS 310
Query: 958 FIHVLMYSYYALAALGPHIAKYLWW 982
H++ + L A H Y
Sbjct: 311 INHMIYVAAAILQAYESHNVPYTGN 335
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.4 bits (81), Expect = 0.12
Identities = 48/273 (17%), Positives = 65/273 (23%), Gaps = 51/273 (18%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLT-ECT 398
C T + + + + T C C T C C
Sbjct: 405 GCPQEKEKSFTIKPVGFKDSLIV-QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCG 463
Query: 399 PIYL--------TECTPICLTECTPIYLTECTPICLTECTPTCLT-ECTP-----ICLTE 444
P +L + P EC+P E P+C C C I
Sbjct: 464 PGWLGSQCECSEEDYRPSQQDECSP---REGQPVCSQRGECLCGQCVCHSSDFGKITGKY 520
Query: 445 C---TPVCLTECTPVCFTKCTPVC---------------LTECTPICLTECTLVCLTKCT 486
C C+ +C C T T C++ L+C +
Sbjct: 521 CECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGK 580
Query: 487 PVCFT-KCTPVCFT--KC--TPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTEC 541
C + C C P C CT EC F + C
Sbjct: 581 CECGSCVCIQPGSYGDTCEKCPTCPDACT--FKKEC-------VECKKFDRGALHDENTC 631
Query: 542 TPVCLTECTPVCFTKCTPVCLTECTPVCPSECT 574
C E V K T CT +C
Sbjct: 632 NRYCRDEIESVKELKDTGKDAVNCTYKNEDDCV 664
Score = 33.9 bits (77), Expect = 0.36
Identities = 52/311 (16%), Positives = 76/311 (24%), Gaps = 49/311 (15%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
LS CL L C + + + + C E PV +
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSF--TIKPVGFKDSL 425
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTC-----------------LTECTPIC 441
+ + T C C T C + P
Sbjct: 426 IV---QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQ 482
Query: 442 LTECTPVCLTECTPVCFTKCTPVCLT-ECTP-----ICLTEC---TLVCLTKCTPVCFTK 492
EC+P E PVC + +C C I C C+ +C
Sbjct: 483 QDECSP---REGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGH 539
Query: 493 CTPVCFT-KCTPVCFT--KCTPICLTECTPVCLTECTPVCFTKCTPVC-LTECTPVCLT- 547
C C +T C T T C++ +C + C C
Sbjct: 540 GQCSCGDCLCDS-DWTGYYCN---CTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYG 595
Query: 548 ---ECTPVCFTKCTPVCLTECTPVCPSECTPVC-LTECTPVCFTKCTPICLTECTPVCFT 603
E P C CT EC + + C C + + + T
Sbjct: 596 DTCEKCPTCPDACT--FKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAV 653
Query: 604 KCTPICLTECT 614
CT +C
Sbjct: 654 NCTYKNEDDCV 664
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.26
Identities = 54/358 (15%), Positives = 106/358 (29%), Gaps = 112/358 (31%)
Query: 676 LLSALLFVSPSA-PLFVLLSAPLFV-LLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSL 733
LL L P P VL + P + +++ + L+ + L +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH------VNCDKLTTII 359
Query: 734 SAPLFVLRSALL------FVLLNERTRGWLMVDSPIPTLAYTLIYLSIVTIGPRLMRDRK 787
+ L VL A + + IPT+ +LI+ ++ ++ ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP--------SAHIPTILLSLIWFDVIKSDVMVVVNK- 410
Query: 788 PYKLTSILVPYNMLMC-ALNLYIAIELLVASTRLKYSYVCQPVTYVNTQEEL-RLLVAST 845
L Y+++ I+I + ++K + + L R +V
Sbjct: 411 -------LHKYSLVEKQPKESTISIPSIYLELKVK----------LENEYALHRSIVDHY 453
Query: 846 RLKYSYVCQPVTYVNTQEELRVSSY-----TYHLISNLAINDCFLQRLDYKIANAVWWYY 900
+ ++ + + Y +HL I +
Sbjct: 454 NIPKTF-DS-----DDLIPPYLDQYFYSHIGHHL---------------KNIEHPERMTL 492
Query: 901 FSKLLEFCDTFFFILRKKDAQLTFLHVYHHSTMFFLWWIGIKWVPSGSTFLPAMVNSFIH 960
F + F D F F+ +K + W SGS ++N+
Sbjct: 493 FRMV--FLD-FRFLEQK------------------IRHDSTAWNASGS-----ILNTLQQ 526
Query: 961 VLMYSYY-------------ALAALGPHIAKYLWWKKYLTILQLIQFTTALILGVNGI 1005
+ Y Y A+ P I + L KY +L++ AL+ I
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-----ALMAEDEAI 579
Score = 32.1 bits (72), Expect = 1.2
Identities = 21/177 (11%), Positives = 54/177 (30%), Gaps = 43/177 (24%)
Query: 775 IVTIGPRLMRDRKPYKLTSILVPYNMLMCALNLYIAIELLVASTRLKYSYVCQPVTYVNT 834
I+ + +L L + + + + R+ Y ++ P+
Sbjct: 54 IIMSKDAVSG---TLRLFWTL-------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 835 QEEL-RLLVASTR----------LKYSYVCQPVTYVNTQE---ELRVSSYTYHLI----- 875
Q + + R KY+ V + Y+ ++ ELR + ++
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKN---VLIDGVL 159
Query: 876 ----SNLAINDCFLQRLDYKIANAVWWYYFSK------LLEFCDTFFFILRKKDAQL 922
+ +A++ C ++ K+ ++W +LE + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 34.3 bits (78), Expect = 0.27
Identities = 23/215 (10%), Positives = 40/215 (18%), Gaps = 26/215 (12%)
Query: 382 TPICLTECTPVCLTECT-PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPI 440
C T + T + + T + +
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 441 CLTECTPVCLTECTPVCFTKCTPVCLT-ECTPICL-TECTLVCLTKCTPVCFTKCTPVCF 498
EC + +C K C C + C + + C
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN- 479
Query: 499 TKCTPVCFTKCTPICLTECTPVCLTECTPV-CFTKCTPVCLTECTPVCLTECTPVCFTKC 557
+ +C +C +C +C T P C +
Sbjct: 480 --NSIICSGLGDCVC-GQC--LCHTSDVPGKLIYGQYCEC-DTINCERYNGQVCGGPGRG 533
Query: 558 TPVC---------------LTECTPVCPSECTPVC 577
C T C + C
Sbjct: 534 LCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVEC 568
Score = 33.9 bits (77), Expect = 0.31
Identities = 33/283 (11%), Positives = 59/283 (20%), Gaps = 36/283 (12%)
Query: 340 SCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECTP 399
+ +C + + T + + + + EC
Sbjct: 369 THRNQPRGDCDGVQ-INVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRC 427
Query: 400 IYLTECTPICLTECTPI-YLTECTP-----ICLTECTPTCLTECTPICL-TECTPVCLTE 452
+ +C + + C C + E C + +C
Sbjct: 428 RDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL 487
Query: 453 CTPVCFTKCTPVCLTECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFT-KCTP 511
VC +C +C T P L + + C +C P
Sbjct: 488 GDCVC-GQC--LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 544
Query: 512 -----IC-LTECTPVCLTECTPVCFTKCTPVCLT------------ECTPVCLTECTPVC 553
C T CL C + C + P C + C
Sbjct: 545 GFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYI 604
Query: 554 FTKCTPVCLT-----ECTPVCPSEC-TPVCLTECTPVCFTKCT 590
C+ CP + + T
Sbjct: 605 SCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEG 647
Score = 33.5 bits (76), Expect = 0.45
Identities = 15/123 (12%), Positives = 26/123 (21%), Gaps = 7/123 (5%)
Query: 502 TPVCFTKCTPICLTECTPVCLTECTPVCFT-KCTPVCLTECTPVCLTECTPVCFTKCTPV 560
C T + P+ F K T + + +
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 561 CLTECTPVCPSECTPVCLTECTPVCFT-KCTP-----ICLTECTPVCFTKCTPICLTECT 614
EC S +C + C +C C + + C +
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNN 480
Query: 615 PIC 617
I
Sbjct: 481 SII 483
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural
genomics, PSI-biology, NEW YORK consortium on MEM
protein structure, nycomps; HET: LDA; 2.30A {Idiomarina
loihiensis}
Length = 249
Score = 33.1 bits (75), Expect = 0.40
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 4/138 (2%)
Query: 649 LFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLFVSPS-APLFVLLSAPLFVLLSALLFV 707
+V+ L ++L + F L + L+ + P + PL V+ LF
Sbjct: 31 RYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSWLPDFFQWLEFILWPLAVITIIALFS 90
Query: 708 LLSAPLFVLRSALLFVLLSAPLFVSLS---APLFVLRSALLFVLLNERTRGWLMVDSPIP 764
+ + + L +A LL+ + S + + ++
Sbjct: 91 FIFSTIMHLIAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYIPR 150
Query: 765 TLAYTLIYLSIVTIGPRL 782
L + L+ L I IG L
Sbjct: 151 ALGFFLLSLVIPVIGQVL 168
Score = 30.4 bits (68), Expect = 2.9
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 3/148 (2%)
Query: 154 LLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL--FVSLSAPLSVLLSALLFVSLSAPL 211
+V + +++L +L F L + L+ + L +L L +++ A
Sbjct: 30 RRYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSWLPDFFQWLEFILWPLAVITIIALF 89
Query: 212 SVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 271
S + S ++ + ++AP + LL+ + S L L +
Sbjct: 90 SFIFSTIMHL-IAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYI 148
Query: 272 SAPLSVLLSALLFVSLSAPLSVLLSALL 299
L L +L+ + L + +
Sbjct: 149 PRALGFFLLSLVIPVIGQVLWYIFVCWM 176
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 32.2 bits (72), Expect = 1.1
Identities = 26/228 (11%), Positives = 40/228 (17%), Gaps = 16/228 (7%)
Query: 402 LTECTPICLTECTPIYLTE----CTPICLTECTPTCLTECTPICLTECTPVCLTECTPVC 457
+ E + E PI C +C P +
Sbjct: 455 VKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLS 514
Query: 458 FTKCTPVCL--TECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLT 515
T+C VC T C +C
Sbjct: 515 GTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQ 574
Query: 516 ECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTP 575
C E + + C+ + + + P
Sbjct: 575 RGGKRCEGEKRQEEDCTFSIME--NNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENG 632
Query: 576 VCLTECTPVCF-TKCTPICLTECTPVCFTKCTPICL-----TECTPIC 617
E CLT V + CL + C
Sbjct: 633 FIRNEKQLYLVGEDVEISCLTGFETVGYQYFR--CLPDGTWRQGDVEC 678
Score = 29.1 bits (64), Expect = 9.3
Identities = 28/229 (12%), Positives = 47/229 (20%), Gaps = 16/229 (6%)
Query: 339 LSCTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPICLTECTPVCLTECT 398
+ C +C P + TEC +C T E
Sbjct: 476 IPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVC-QSGTYGENCEKQ 534
Query: 399 PIYLTECTPICLTECTPIYLTECTPICLTECTPTCLTECTPICLTECTPVCLTECTPVCF 458
C + C + EC C E
Sbjct: 535 SPDYKSNAVDGQWGCWSSW-----STCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEED 589
Query: 459 TKCTPVCLTECTPICLTECTLVCLTKCTPVCFT-KCTPVCFTKCTPVCFTKCTPICLTEC 517
+ + C+ + + + C + + K + +
Sbjct: 590 CTFSIME--NNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDV 647
Query: 518 TPVCLTECTPVC--FTKCTP-----VCLTECTPVCLTECTPVCFTKCTP 559
CLT V + +C P EC + TP
Sbjct: 648 EISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITP 696
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS
domain, hydrolase, metal-binding, transmembrane; 3.30A
{Methanocaldococcus jannaschii}
Length = 224
Score = 31.0 bits (70), Expect = 1.7
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 686 SAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSALLFVLLSAPLFVSL 733
S LF ++ P+ + ++ +LF+++ L ++ +++ + +L LFVS+
Sbjct: 4 SIRLFKIMGIPIELHITFILFLVVIIGLSIMNNSIFWAVLFILLFVSV 51
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 31.3 bits (71), Expect = 1.7
Identities = 16/110 (14%), Positives = 24/110 (21%), Gaps = 9/110 (8%)
Query: 468 ECTPICLTECTLVCLTKCTPVCFTKCTPVCFTKCTPVCFTKCTPICLTECTPVCLTECTP 527
E + L V C + F + T+ C C
Sbjct: 26 EGPEVTLVN--EVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPS 83
Query: 528 VCFTKCTPVCLTECTPVCLTECTPVCFTKCTPVCLTECTPVCPSECTPVC 577
C +C + T + EC C C+ C
Sbjct: 84 RC--ECLDDLDEPTHFAYDAQGRVRADTGAV---IYECNSFCS--CSMEC 126
Score = 30.6 bits (69), Expect = 2.7
Identities = 14/94 (14%), Positives = 21/94 (22%), Gaps = 7/94 (7%)
Query: 500 KCTPVCFTKCTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPVCLTECTPVCFTKCTP 559
C + F + LT+ C C C EC
Sbjct: 40 PCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRC--ECLDDLDEPTHF 97
Query: 560 VCLTECTPVCPSECTPVCLTECTPVCFTKCTPIC 593
+ + + EC C C+ C
Sbjct: 98 AYDAQGRVRADTGAV---IYECNSFC--SCSMEC 126
>3rko_N NADH-quinone oxidoreductase subunit N; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 485
Score = 31.2 bits (71), Expect = 2.2
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 29/139 (20%)
Query: 623 APLFVLLSAPLFVLLSAPLFVSLSAPLFVLRSALLFVLLSAPLFVLLSAPLSVLLSALLF 682
PL ++ + V+LS + L +++ + + + ++ ++ L+
Sbjct: 12 LPLLIVGLTVVVVMLSI-AWRRNHFLNATL--SVIGLNAALVSLWFVGQAGAMDVTPLMR 68
Query: 683 VSPSAPLFVLLSAPLFVLLSALLFVLLSAPLFVLRSA--------LLFVLLSAPLFVS-- 732
V A L+ L VLL++L + P + +L L L +
Sbjct: 69 VDGFAMLYTGL-----VLLASLATCTFAYPWLEGYNDNKDEFYLLVLIAALGGILLANAN 123
Query: 733 -----------LSAPLFVL 740
+S PLF L
Sbjct: 124 HLASLFLGIELISLPLFGL 142
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 30.2 bits (67), Expect = 5.4
Identities = 29/243 (11%), Positives = 48/243 (19%), Gaps = 23/243 (9%)
Query: 389 CTPVCLTECTPIYLTECTPICLTECTPIYLTECTPICLT------ECTPTCLTECT---- 438
C+ VC P + + E C + C +
Sbjct: 1152 CSRVC---QPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPE 1208
Query: 439 -PICLTECTPVCLTECTPVCFTKCTPVCL-TECTPICLTECTLVCLTKCTPVCFTKCTPV 496
P C + L + + L + + +C L + C
Sbjct: 1209 APRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSH--CVLVGMRS 1266
Query: 497 CFTKCTPVCF-TKCTPICLTECTPVCLTECTPVCF-TKCTPVCLTECTPVCLTECTPVCF 554
+ PVC C T + + + + C
Sbjct: 1267 LWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMTFNLIGEST 1326
Query: 555 TKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICLTECTPVCFTKCTPICLTECT 614
+CT S P C T P+ T
Sbjct: 1327 IRCTSDP---HGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVG-TSLN 1382
Query: 615 PIC 617
C
Sbjct: 1383 YEC 1385
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 29.8 bits (68), Expect = 6.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 176 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 235
AP +S L+ V L L+AL + S S P SV+ L PL V + ALL
Sbjct: 872 QAPSLYAIS-LIVVFL------CLAAL-YESWSIPFSVM--------LVVPLGV-IGALL 914
Query: 236 FVSL 239
+
Sbjct: 915 AATF 918
Score = 29.8 bits (68), Expect = 6.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 208 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 267
AP +S L+ V L L+AL + S S P SV+ L PL V + ALL
Sbjct: 872 QAPSLYAIS-LIVVFL------CLAAL-YESWSIPFSVM--------LVVPLGV-IGALL 914
Query: 268 FVSL 271
+
Sbjct: 915 AATF 918
Score = 29.8 bits (68), Expect = 6.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 240 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 299
AP +S L+ V L L+AL + S S P SV+ L PL V + ALL
Sbjct: 872 QAPSLYAIS-LIVVFL------CLAAL-YESWSIPFSVM--------LVVPLGV-IGALL 914
Query: 300 FVSL 303
+
Sbjct: 915 AATF 918
Score = 29.8 bits (68), Expect = 6.8
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 272 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 331
AP +S L+ V L L+AL + S S P SV+ L PL V + ALL
Sbjct: 872 QAPSLYAIS-LIVVFL------CLAAL-YESWSIPFSVM--------LVVPLGV-IGALL 914
Query: 332 FVSL 335
+
Sbjct: 915 AATF 918
Score = 29.4 bits (67), Expect = 8.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 207
+L+ V L L+AL + S S P SV+ L PL V + ALL +
Sbjct: 880 SLIVVFL------CLAAL-YESWSIPFSVM--------LVVPLGV-IGALLAATF 918
Score = 29.4 bits (67), Expect = 9.0
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 654 SALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLL 709
+ L+ + + + V L L+AL + S S P V+L PL ++ ALL
Sbjct: 873 APSLYAI--SLIVVFL------CLAAL-YESWSIPFSVMLVVPL-GVIGALLAATF 918
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 29.4 bits (67), Expect = 7.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 160 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 219
AP LS LL V L L A L+ S S P SV+ L PL V + ALL
Sbjct: 871 QAPALYALS-LLVVFL-----CL--AALYESWSIPFSVM--------LVVPLGV-IGALL 913
Query: 220 FVSL 223
S+
Sbjct: 914 ATSM 917
Score = 29.4 bits (67), Expect = 7.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 192 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 251
AP LS LL V L L A L+ S S P SV+ L PL V + ALL
Sbjct: 871 QAPALYALS-LLVVFL-----CL--AALYESWSIPFSVM--------LVVPLGV-IGALL 913
Query: 252 FVSL 255
S+
Sbjct: 914 ATSM 917
Score = 29.4 bits (67), Expect = 7.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 224 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 283
AP LS LL V L L A L+ S S P SV+ L PL V + ALL
Sbjct: 871 QAPALYALS-LLVVFL-----CL--AALYESWSIPFSVM--------LVVPLGV-IGALL 913
Query: 284 FVSL 287
S+
Sbjct: 914 ATSM 917
Score = 29.4 bits (67), Expect = 7.9
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 256 SAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALL 315
AP LS LL V L L A L+ S S P SV+ L PL V + ALL
Sbjct: 871 QAPALYALS-LLVVFL-----CL--AALYESWSIPFSVM--------LVVPLGV-IGALL 913
Query: 316 FVSL 319
S+
Sbjct: 914 ATSM 917
Score = 29.4 bits (67), Expect = 9.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 654 SALLFVLLSAPLFVLLSAPLSVLLSALLFVSPSAPLFVLLSAPLFVLLSALLFVLL 709
+ L+ L + L V L L A L+ S S P V+L PL ++ ALL +
Sbjct: 872 APALYAL--SLLVVFL-----CL--AALYESWSIPFSVMLVVPL-GVIGALLATSM 917
Score = 29.0 bits (66), Expect = 9.7
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 153 ALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSLSAPLSVLLSALLFVSL 207
+LL V L L A L+ S S P SV+ L PL V + ALL S+
Sbjct: 879 SLLVVFL-----CL--AALYESWSIPFSVM--------LVVPLGV-IGALLATSM 917
>1w0r_A Properdin, factor P; X-RAY scattering, analytical
ultracentrifugation, complement, thrombospondin type I
repeats, constrained modelling; NMR {Homo sapiens} PDB:
1w0s_A
Length = 442
Score = 29.2 bits (65), Expect = 9.2
Identities = 33/255 (12%), Positives = 52/255 (20%), Gaps = 30/255 (11%)
Query: 363 TECTPICLTECTPICLTECTPICLTECTPVCLTECTPIYLTECTPICLTECTPIYLTECT 422
T C+ C T E + + P E P+
Sbjct: 176 TPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGP 235
Query: 423 PICLTECTPTC---LTECTPICLTECTPVCLTECTPVCFTKCTPVCLTECTPICLTECTL 479
++ C TC T C C T + C +
Sbjct: 236 WGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCA----GDATRTHICNTAVPCPVDGEW 291
Query: 480 VCLTKCTPVCFTKCTPVCFTKCT---PVCFTKCTPICLTECTPVCLTECTPVCFTKCTPV 536
+ +P C + C C
Sbjct: 292 DSWGEWSP-----CIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHC--- 343
Query: 537 CLTECTPV--CLTECTPVCFTKCTPVCLT--------ECTPVCPSECTPVCLTECTPVCF 586
+ P+ +E + + C P C CTP+ P V + E
Sbjct: 344 YSIQHCPLKGSWSEWST--WGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKN 401
Query: 587 TKCTPICLTECTPVC 601
L C +
Sbjct: 402 VTFWGRPLPRCEELQ 416
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 28.7 bits (64), Expect = 9.6
Identities = 16/101 (15%), Positives = 21/101 (20%), Gaps = 8/101 (7%)
Query: 495 PVCFTKCTPVCFTKCTPICLTECTPVCLTECTPVCF-TKCTPVCLTECTPVCLTECTPVC 553
P + + C T I C C + C L+
Sbjct: 56 PSNYKYVSQNCVTSPMNIDRNITHLQY-CVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPE 114
Query: 554 FTKCTPVCLTECTPVCPSECTPVCLTECTPVCFTKCTPICL 594
F P + EC C C C L
Sbjct: 115 FNMAEPPLIFECNHACS------CWRNCRNRVVQNGLRARL 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.461
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,595,842
Number of extensions: 932889
Number of successful extensions: 6043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3127
Number of HSP's successfully gapped: 493
Length of query: 1076
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 972
Effective length of database: 3,798,009
Effective search space: 3691664748
Effective search space used: 3691664748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.1 bits)