BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17253
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+Q + N+ L L N++ ++ AL + L+ L L+ N+L+++ F D +TN+ EL
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVF---DKLTNLKEL 114
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L N++++L DG + L+ L+L+HN+L+++ F L +L LD+S+N L +L E
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+TN+ L L N++++L +G + L L L N+L+++ PD D +TN+ L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGV--FDKLTNLTYLNL 140
Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
HN++++L G + L+ LDLS+N+L+++ F L LK L + N L ++ +
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 114 ELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
EL+L +NE L+ G + L +++ S+NK+ I F G V E+ L N
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN---EILLTSNR 92
Query: 172 IENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+EN+ + G+ L L L N++ + D FIGL S+++L + N +TT+
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 44 DSISLKIAVSNLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDG--AALRPIDVCAPPSTLD 100
D+ L + + L+ LPSK F L L+++ L K P G L+ ++ TL
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE------TLW 91
Query: 101 NLKNQVQGV--------TNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPD 151
N++Q + N+ EL+L N++++L + + L+ L L +N+L+++
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151
Query: 152 DFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210
F D +T++ EL+L +N+++ + +GA + L L L +N+L+ + F L+ LK
Sbjct: 152 VF---DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 211 MLDISHN 217
ML + N
Sbjct: 209 MLQLQEN 215
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+T + L L N+++ L G + L L ++ NKL+ + F D + N+ EL+L
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF---DQLVNLAELRL 116
Query: 168 QHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N++++L + + L+ L L +N+L+++ F L SLK L + +N L + E +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGA---------ALRPIDVCAPPST 98
L++ + L LP F +L Q+ L L+ N L G +L+ +D+ +
Sbjct: 33 LELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL--SFNG 89
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+ + + G+ + L QH+ ++ + + + L LD+SH R F GL
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 157 DSVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
S+ LK+ N + L + L+ LDLS +L +SP F L SL++L++
Sbjct: 150 SSLE---VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 215 SHNLLTTLE 223
SHN +L+
Sbjct: 207 SHNNFFSLD 215
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L EIE + D A G+H LS L L+ N +++ SP F GL S+ N+ ++ + +E
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL 222
+ G L+ L +L+++HN + + P F L +L +D+S+N + T+
Sbjct: 121 SFPIGQLI---TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
+DLS N L+ + F + + + L L EIE + D A G+H LS L L+ N ++
Sbjct: 37 IDLSFNPLKILKSYSF---SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLE 223
+ SP F GL SL+ L L +LE
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLE 120
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 60 SKTFQELGL-QIVNLKLTKNNLRPDGA---------ALRPIDVCAPPSTLDNLKNQVQGV 109
S +F+++ L + L L++N L G +LR +D+ + + + G+
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGL 398
Query: 110 TNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+ L QH+ ++ + A + + L LD+S+ + F+GL S+ LK+
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT---LKM 455
Query: 168 QHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
N ++ L L+ LDLS +L IS F L L++L++SHN L L+ +
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L EIE + D A G+H LS L L+ N +++ SP F GL S+ N+ ++ + +E
Sbjct: 56 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 115
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL 222
+ G L+ L +L+++HN + + P F L +L +D+S+N + T+
Sbjct: 116 SFPIGQLI---TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
+DLS N L+ + F + L L EIE + D A G+H LS L L+ N ++
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQ---WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 88
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLE 223
+ SP F GL SL+ L L +LE
Sbjct: 89 SFSPGSFSGLTSLENLVAVETKLASLE 115
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 60 SKTFQELGL-QIVNLKLTKNNLRPDGA---------ALRPIDVCAPPSTLDNLKNQVQGV 109
S +F+++ L + L L++N L G +LR +D+ + + + G+
Sbjct: 336 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGL 393
Query: 110 TNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+ L QH+ ++ + A + + L LD+S+ + F+GL S+ LK+
Sbjct: 394 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT---LKM 450
Query: 168 QHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
N ++ L L+ LDLS +L IS F L L++L++SHN L L+ +
Sbjct: 451 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 510
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
EL L NE+ + DG + L +L+L N+L I P+ F G ++I EL+L N+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGENK 89
Query: 172 IENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
I+ + + +G+H L L+L N++ + P F L+SL L+++ N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 136 SRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNK 194
+ L L+ N+L IS D G + ++ +L+L+ N++ ++ A G + L L NK
Sbjct: 32 TELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
++ IS F+GL LK L++ N ++ +
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCV 117
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+Q + N+ L L N++ ++ AL + L+ L L+ N+L+++ F D +TN+ EL
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVF---DKLTNLKEL 114
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L N++++L DG + L+ L L HN+L+++ F L +L LD+ +N L +L E
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+TN+ L L N++++L +G + L L L N+L+++ PD D +TN+ L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGV--FDKLTNLTYLYL 140
Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
HN++++L G + L+RLDL +N+L+++ F L LK L ++ N L ++ +
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL S+ + L L N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS---LVLYGN 90
Query: 171 EIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+I L +L G+ L L L+ NK+ + D F L +L +L + N L T+ +
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL SL L + N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 221 TLEET 225
L ++
Sbjct: 94 ELPKS 98
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL S+ + L L N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS---LVLYGN 90
Query: 171 EIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+I L +L G+ L L L+ NK+ + D F L +L +L + N L T+ +
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL SL L + N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 221 TLEET 225
L ++
Sbjct: 94 ELPKS 98
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 310
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N I ++ + + L RL S+NK+ +S L ++ L HN
Sbjct: 311 TLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHN 359
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 205
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 262
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 263 LTELKLGAN 271
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L
Sbjct: 256 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 309
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N I ++ + + L RL S+NK+ +S L ++ L HN
Sbjct: 310 TLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDVS--SLANLTNINWLSAGHN 358
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 147 LSGLTSLQQLNF-GNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 262 LTELKLGAN 270
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 128 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL---DGALMGIHG 184
A + L LDL +K+ + PD F GL ++FEL+L + + DG +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGL---FHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 185 LSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHN 217
L+RLDLS N++R++ G L+SLK +D S N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 103 KNQVQGV--TNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
+N G+ +++ L L H + +L+ + + L L+L++NK+ I+ + F GLD
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-- 314
Query: 160 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
N+ L L +N + L + G+ ++ +DL N + I F L+ L+ LD+ N
Sbjct: 315 -NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 219 LTTLE 223
LTT+
Sbjct: 374 LTTIH 378
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 20/144 (13%)
Query: 86 ALRPIDVCAPPSTLD---NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 142
L +DV T+D N N + + F L L H+ + GA G H + D
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISK-SQAFSLILAHH----IMGAGFGFHNIKDPD--- 256
Query: 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPD 201
+ F GL + +++ L L H + +L+ + + L L+L++NK+ I+ +
Sbjct: 257 -------QNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 202 DFIGLDSLKMLDISHNLLTTLEET 225
F GLD+L++L++S+NLL L +
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSS 332
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ L L L+HN L ++ P F L ++ L L N + L + + L LD+
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRG---LSLNSNRLTVLSHNDLPAN-LEILDI 533
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHN 217
S N+L +PD F+ SL +LDI+HN
Sbjct: 534 SRNQLLAPNPDVFV---SLSVLDITHN 557
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
+G+ N+ L L ++++ L + L L+LS N+L I P F GL S+ ++ +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
Q IE A + L L+LSHN L ++ D F L L+ + ++HN
Sbjct: 212 AQVATIER--NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 107 QGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFE 164
+ ++ + EL L++N IE++ A + L RLDL +L IS F GL N+
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL---VNLRY 160
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L L ++++ L + L L+LS N+L I P F GL SL+ L + H + T+E
Sbjct: 161 LNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 225 TS 226
+
Sbjct: 220 NA 221
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 103 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
+ +G+ N+ L L I+++ L + GL L++S N I P F GL S+ +
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ + Q + IE A G+ L L+L+HN L ++ D F L L L + HN
Sbjct: 248 WVMNSQVSLIER--NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
+G+ N+ L L ++++ L + L L+LS N+L I P F GL S+ ++ +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
Q IE A + L L+LSHN L ++ D F L L+ + ++HN
Sbjct: 212 AQVATIER--NAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 107 QGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFE 164
+ ++ + EL L++N IE++ A + L RLDL +L IS F GL N+
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGL---VNLRY 160
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L L ++++ L + L L+LS N+L I P F GL SL+ L + H + T+E
Sbjct: 161 LNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIER 219
Query: 225 TS 226
+
Sbjct: 220 NA 221
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 9/171 (5%)
Query: 57 DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELK 116
DLPS F +L ++ K + +L+ +D+ + + + + G+ + L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLD 402
Query: 117 LQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
QH+ ++ + + + L LD+SH R F GL S+ LK+ N +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---VLKMAGNSFQE 459
Query: 175 --LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L + L+ LDLS +L +SP F L SL++L++SHN +L+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
G T++ L L N + + +G+ L LD H+ L+ +S +F S+ N+ L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDI 428
Query: 168 QHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLEET 225
H +G G+ L L ++ N + PD F L +L LD+S L L T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 226 S 226
+
Sbjct: 489 A 489
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 28/111 (25%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
LDLS N LR + F + L L EI+ + DGA + LS L L+ N ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQ---VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 197 TISPDDFIGLDSL------------------------KMLDISHNLLTTLE 223
+++ F GL SL K L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 108 GVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
G+ + L QH+ ++ + + + L LD+SH R F GL S+ L
Sbjct: 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---VL 474
Query: 166 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
K+ N + L + L+ LDLS +L +SP F L SL++L++SHN +L+
Sbjct: 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
G ++ L L N + + +G+ L LD H+ L+ +S +F S+ N+ L +
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDI 452
Query: 168 QHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLEET 225
H +G G+ L L ++ N + PD F L +L LD+S L L T
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 226 S 226
+
Sbjct: 513 A 513
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 113
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 93
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L
Sbjct: 260 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 313
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N I ++ + + L RL ++NK+ +S L ++ L HN
Sbjct: 314 TLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHN 362
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 151 LSGLTSLQQLSF-GNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 208
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 209 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 265
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 266 LTELKLGAN 274
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 27/136 (19%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLD--------------- 157
L+L+H I + D + ++ L L++SH L T++P+ GL+
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 158 --SVTNIFELK---LQHNEIENLDGALMGIHGLSRLD---LSHNKLRTISPDDFIGLDSL 209
+V ++ L+ L +N I ++G+++ H L RL L +L + P F GL+ L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 210 KMLDISHNLLTTLEET 225
++L++S N LTTLEE+
Sbjct: 299 RVLNVSGNQLTTLEES 314
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR 196
LDL N+++T++ D+F S ++ EL+L N + ++ GA + L L L N+L+
Sbjct: 37 LDLGKNRIKTLNQDEFA---SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTL 222
I F GL +L LDIS N + L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVIL 119
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
G++N+ +L + N+I L D ++ L L++ N L IS F GL+S+ +L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE---QLT 158
Query: 167 LQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
L+ + ++ AL +HGL L L H + I F L LK+L+ISH
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N I+ L+ L L+L+ N + + P F +++ N+ L L+ N ++
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF---NNLFNLRTLGLRSNRLK 93
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ G G+ L++LD+S NK+ + F L +LK L++ N
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
LDL N+++T++ D+F L+ L+++ N+++ +E
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 34 VDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPID 91
+D + + L + + + LP FQ + L V L L +N+L P G
Sbjct: 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-LVLERNDLSSLPRGIFHNTPK 142
Query: 92 VCAPPSTLDNLK----NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 147
+ + +NL+ + Q T++ L+L N + ++D +L I L ++S+N L T
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLST 200
Query: 148 IS-PDDFIGLDSVTNIFE------------LKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
++ P LD+ N LKLQHN + + L+ GL +DLS+N+
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 259
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
L I F+ + L+ L IS+N L L
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVAL 287
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 121 EIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGA 178
+IE +D A H + +L + N +R + P F + +T L L+ N++ +L G
Sbjct: 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT---VLVLERNDLSSLPRGI 136
Query: 179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L+ L +S+N L I D F SL+ L +S N LT ++
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L
Sbjct: 257 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 310
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N I ++ + + L RL +NK+ +S L ++ L HN
Sbjct: 311 TLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 359
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 205
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 262
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 263 LTELKLGAN 271
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 80 LRPDGAALRPIDVCAPPSTLDNL---KNQVQ------GVTNIFELKLQHNEIENLDGALM 130
L +G L+ I A + L +L NQ+ G+T + ELKL N+I N+ L
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SPLA 280
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ L+ L+L+ N+L ISP + ++ N+ L L N I ++ + + L RL
Sbjct: 281 GLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF 334
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHN 217
+NK+ +S L ++ L HN
Sbjct: 335 YNNKVSDVS--SLANLTNINWLSAGHN 359
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 205
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 262
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 263 LTELKLGAN 271
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 80 LRPDGAALRPIDVCAPPSTLDNL---KNQVQ------GVTNIFELKLQHNEIENLDGALM 130
L +G L+ I A + L +L NQ+ G+T + ELKL N+I N+ L
Sbjct: 221 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SPLA 279
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ L+ L+L+ N+L ISP + ++ N+ L L N I ++ + + L RL
Sbjct: 280 GLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFF 333
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHN 217
+NK+ +S L ++ L HN
Sbjct: 334 YNNKVSDVS--SLANLTNINWLSAGHN 358
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 147 LSGLTSLQQLNF-GNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 204
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 205 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 261
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 262 LTELKLGAN 270
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L
Sbjct: 261 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP-----ISNLKNLTYL 314
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N I ++ + + L RL +NK+ +S L ++ L HN
Sbjct: 315 TLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHN 363
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 22/129 (17%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP--------------- 150
+ G+T++ +L N++ +L L + L RLD+S NK+ IS
Sbjct: 152 LSGLTSLQQLSF-GNQVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN 209
Query: 151 --DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
D L +TN+ EL L N+++++ G L + L+ LDL++N++ ++P GL
Sbjct: 210 QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTK 266
Query: 209 LKMLDISHN 217
L L + N
Sbjct: 267 LTELKLGAN 275
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 34 VDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPID 91
+D + + L + + + LP FQ + L V L L +N+L P G
Sbjct: 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV-LVLERNDLSSLPRGIFHNTPK 148
Query: 92 VCAPPSTLDNLK----NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 147
+ + +NL+ + Q T++ L+L N + ++D +L I L ++S+N L T
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLST 206
Query: 148 IS-PDDFIGLDSVTNIFE------------LKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
++ P LD+ N LKLQHN + + L+ GL +DLS+N+
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 265
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
L I F+ + L+ L IS+N L L
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVAL 293
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 121 EIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGA 178
+IE +D A H + +L + N +R + P F + +T L L+ N++ +L G
Sbjct: 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT---VLVLERNDLSSLPRGI 142
Query: 179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L+ L +S+N L I D F SL+ L +S N LT
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
G+ DLS +K+ + F T++ +L L NEI +D A G+ L +L+LS
Sbjct: 276 GVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L +I F LD L++LD+S+N + L + S
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHN 193
L +L L+ N++ I + F GL T++ +L L N + ++D + + L LDLS+N
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGL---THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+R + F+GL +LK L + N L ++
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 104 NQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSVT 160
N +G++++ LKL +N+ L+ GA G+ L L L+ L +S + F L S+
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 161 NIFELKLQHNEIENLDGA--LMGIHGLSRLDLSHNKLRTISPDDFIGL 206
L L+ N I+ + A + + LDL+ NK+++I +D +
Sbjct: 133 ---MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
G T++ L L N + + +G+ L LD H+ L+ +S +F S+ N+ L +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDI 428
Query: 168 QHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLEET 225
H +G G+ L L ++ N + PD F L +L LD+S L L T
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 226 S 226
+
Sbjct: 489 A 489
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 57 DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELK 116
DLPS F +L ++ K + +L+ +D+ + + + + G+ + L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLD 402
Query: 117 LQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
QH+ ++ + + + L LD+SH R F GL S+ LK+ N +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE---VLKMAGNSFQE 459
Query: 175 --LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L + L+ LDLS +L +SP F L SL++L+++ N L ++
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 89
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSH 192
+ L L++N+L S F GL TN+ +L L +N + ++ +G+ + L L L +
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLK-WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 193 NKLRTISPDDFIGLDSLKMLDI 214
N ++ +SP F GL +L+ L +
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSL 303
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 46 ISLKIAVSNLNDLPSKTFQELGLQ-IVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN 104
+SL ++L L ++TF L ++ L LTKN++ S + N
Sbjct: 358 LSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHI----------------SKIANGTF 401
Query: 105 QVQGVTNIFELKLQHNEIEN-LDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
G I +L L NEIE L G G+ + + LS+NK +S F + S+
Sbjct: 402 SWLGQLRILDLGL--NEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQ-- 457
Query: 163 FELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
L L+ ++N+D + L+ LDLS+N + I+ D GL++L++LD HN L
Sbjct: 458 -RLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
Query: 220 TTLEE 224
L +
Sbjct: 517 ARLWK 521
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 138 LDLSHNKLRTISPDDFI----------GLDSVTNIFE-----------LKLQHNEIENL- 175
L+L+HN+LR + P +F G +S++ + L LQHNE+ +
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 176 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
D + L+ LDL N + I + F +L LD+SHN L++
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 15/200 (7%)
Query: 36 ALQDRFGNDSISLKIAVSNLNDLPS---KTFQELGLQIVNLKLTKNNLRPDGAALRPIDV 92
+L+ F S+SL + N++D K + L + N+ TK+N +L+ + +
Sbjct: 302 SLKRAFTKQSVSLA-SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL 360
Query: 93 CAPPSTLDNLKNQV---QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RT 147
++L L N+ + + L L N I + +G + L LDL N++ +
Sbjct: 361 SKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQK 420
Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRT--ISPDDFI 204
+S ++ GL NIFE+ L +N+ L + + L RL L L+ ISP F
Sbjct: 421 LSGQEWRGL---RNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFR 477
Query: 205 GLDSLKMLDISHNLLTTLEE 224
L +L +LD+S+N + + E
Sbjct: 478 PLRNLTILDLSNNNIANINE 497
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L+L+HN+LR + P +F L +LD N ++ LE
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLE 65
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 110 TNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TN+ EL L N I + L +LDLSHN L + + L+++ + K +
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNK 156
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 203
+ + + +G L +LDLS N L+ SP F
Sbjct: 157 ILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH 192
+ LDLS NK+ I D L + N+ L L+ + I ++G A + L LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGD---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 109
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L ++S F L SLK L++ N TL TS
Sbjct: 110 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TNI L L HN++ L A L+ LD+ N + + P+ L + L LQ
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 81
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
HNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRT 197
D SH KL + PDD TNI L L HN++ L A L+ LD+ N +
Sbjct: 10 DCSHLKLTQV-PDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 198 ISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ P+ L LK+L++ HN L+ L + +
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 29/129 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE----------- 164
K+Q + E LD + L +L+LS N+++ SP F + + +F
Sbjct: 156 KIQALKSEELD--IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213
Query: 165 ---LKLQHNEIENL-----------DGALMGIHG--LSRLDLSHNKLRTISPDDFIGLDS 208
L+L + I NL + +G+ L+ LDLS+N L + D F L
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273
Query: 209 LKMLDISHN 217
L+ + +N
Sbjct: 274 LEYFFLEYN 282
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ + + LS+NK ++ + F + S+ + ++ +++ + L+ LDL
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
S+N + I+ D GL+ L++LD+ HN L L +
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 129 LMGIHGLSRLDLSHNKLRTISPDDFIG-----LDSVTNIFELKLQHNEIENLDGALMG-I 182
L G+ L LDL HN L + G L ++++ L L+ N + + + +
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L +DL N L T+ F SLK L++ NL+T++E+
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH 192
+ LDLS NK+ I D L + N+ L L+ + I ++G A + L LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGD---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L ++S F L SLK L++ N TL TS
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TNI L L HN++ L A L+ LD+ N + + P+ L + L LQ
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 86
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
HNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRT 197
D SH KL + PDD TNI L L HN++ L A L+ LD+ N +
Sbjct: 15 DCSHLKLTQV-PDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 68
Query: 198 ISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ P+ L LK+L++ HN L+ L + +
Sbjct: 69 LEPELCQKLPMLKVLNLQHNELSQLSDKT 97
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 29/129 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE----------- 164
K+Q + E LD + L +L+LS N+++ SP F + + +F
Sbjct: 161 KIQALKSEELD--IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 218
Query: 165 ---LKLQHNEIENL-----------DGALMGIHG--LSRLDLSHNKLRTISPDDFIGLDS 208
L+L + I NL + +G+ L+ LDLS+N L + D F L
Sbjct: 219 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 278
Query: 209 LKMLDISHN 217
L+ + +N
Sbjct: 279 LEYFFLEYN 287
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ + + LS+NK ++ + F + S+ + ++ +++ + L+ LDL
Sbjct: 433 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 492
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
S+N + I+ D GL+ L++LD+ HN L L +
Sbjct: 493 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 526
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 129 LMGIHGLSRLDLSHNKLRTISPDDFIG-----LDSVTNIFELKLQHNEIENLDGALMG-I 182
L G+ L LDL HN L + G L ++++ L L+ N + + + +
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 564
Query: 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L +DL N L T+ F SLK L++ NL+T++E+
Sbjct: 565 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 606
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 110 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TNI L L HN++ L A L+ LD+ N + + P+ L + L LQ
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK---VLNLQ 91
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
HNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRT 197
D SH KL + PDD TNI L L HN++ L A L+ LD+ N +
Sbjct: 20 DCSHLKLTQV-PDDL-----PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 73
Query: 198 ISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ P+ L LK+L++ HN L+ L + +
Sbjct: 74 LEPELCQKLPMLKVLNLQHNELSQLSDKT 102
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 29/129 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE----------- 164
K+Q + E LD + L +L+LS N+++ SP F + + +F
Sbjct: 166 KIQALKSEELD--IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 223
Query: 165 ---LKLQHNEIENL-----------DGALMGIHG--LSRLDLSHNKLRTISPDDFIGLDS 208
L+L + I NL + +G+ L+ LDLS+N L + D F L
Sbjct: 224 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 283
Query: 209 LKMLDISHN 217
L+ + +N
Sbjct: 284 LEYFFLEYN 292
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190
G+ + + LS+NK ++ + F + S+ + ++ +++ + L+ LDL
Sbjct: 438 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 497
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
S+N + I+ D GL+ L++LD+ HN L L +
Sbjct: 498 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 531
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 129 LMGIHGLSRLDLSHNKLRTISPDDFIG-----LDSVTNIFELKLQHNEIENLDGALMG-I 182
L G+ L LDL HN L + G L ++++ L L+ N + + + +
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 569
Query: 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L +DL N L T+ F SLK L++ NL+T++E+
Sbjct: 570 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 611
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 107 QGVTNIFELKLQH---NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
+G++N+ L L EI NL + L LDLS N L I P F GL + ++
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
++ Q IE A + L ++L+HN L + D F L L+ + + HN
Sbjct: 238 MIQSQIQVIER--NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 101 NLKNQVQGV-TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
NL+ G+ TN L L N+I+ + + + L L LS N +RTI F GL
Sbjct: 54 NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-- 111
Query: 159 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
N+ L+L N + + +GA + + L L L +N + +I F + SL+ LD+
Sbjct: 112 -ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
TN L L N+I+ + + + L L LS N +RTI F GL +L L++ N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 219 LTTL 222
LTT+
Sbjct: 124 LTTI 127
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 103 KNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
K QV G + L L HN++++L + L+ LD+S N+L ++ GL +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ- 127
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
EL L+ NE++ L G L L +L L++N+L + GL++L L + N L
Sbjct: 128 --ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 221 TLEE 224
T+ +
Sbjct: 186 TIPK 189
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 103 KNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
K QV G + L L HN++++L + L+ LD+S N+L ++ GL +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ- 127
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
EL L+ NE++ L G L L +L L++N+L + GL++L L + N L
Sbjct: 128 --ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 221 TLEE 224
T+ +
Sbjct: 186 TIPK 189
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
+ LDLS+N++ IS D L N+ L L N I ++ + + L LDLS+
Sbjct: 53 AVKSLDLSNNRITYISNSD---LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L +S F L SL L++ N TL ETS
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+Q N+ L L N I ++ + + L LDLS+N L +S F L S+T
Sbjct: 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF--- 128
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDL----SHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L L N + L + H L++L + + + I DF GL L+ L+I + L
Sbjct: 129 LNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 221 TLEETS 226
+ E S
Sbjct: 188 SYEPKS 193
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
+ LDLS+N++ IS D L N+ L L N I ++ + + L LDLS+
Sbjct: 27 AVKSLDLSNNRITYISNSD---LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L +S F L SL L++ N TL ETS
Sbjct: 84 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 117
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+Q N+ L L N I ++ + + L LDLS+N L +S F L S+T
Sbjct: 46 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF--- 102
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDL----SHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L L N + L + H L++L + + + I DF GL L+ L+I + L
Sbjct: 103 LNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 161
Query: 221 TLEETS 226
+ E S
Sbjct: 162 SYEPKS 167
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 103 KNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
K QV G + L L HN++++L + L+ LD+S N+L ++ GL +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ- 127
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
EL L+ NE++ L G L L +L L++N+L + GL++L L + N L
Sbjct: 128 --ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 221 TL 222
T+
Sbjct: 186 TI 187
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 103 KNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
K QV G + L L HN++++L + L+ LD+S N+L ++ GL +
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ- 127
Query: 162 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
EL L+ NE++ L G L L +L L++N+L + GL++L L + N L
Sbjct: 128 --ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 221 TL 222
T+
Sbjct: 186 TI 187
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
+L LQ + L D G+ L+ L+L +N+L+T+S F D +T + L L +N++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF---DDLTELGTLGLANNQL 95
Query: 173 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+L G + L +L L N+L+++ F L LK L ++ N L ++
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
+L LQ + L D G+ L+ L+L +N+L+T+S F D +T + L L +N++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF---DDLTELGTLGLANNQL 95
Query: 173 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+L G + L +L L N+L+++ F L LK L ++ N L ++
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 136 SRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK 194
+RL+L NKL+++ F D +T + +L L N+I++L DG + L+ L L NK
Sbjct: 31 TRLELESNKLQSLPHGVF---DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L+++ F L LK L + N L ++ +
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 100 DNLKNQVQGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLS 141
D +K + G N+ E +L N+ + G H + LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 142 HNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISP 200
+N L P + + S+ +F L L HN+I ++ + + GL+ LDLS NKL P
Sbjct: 641 YNMLSGYIPKE---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 201 DDFIGLDSLKMLDISHNLLT 220
L L +D+S+N L+
Sbjct: 698 QAMSALTMLTEIDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 100 DNLKNQVQGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLS 141
D +K + G N+ E +L N+ + G H + LD+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 142 HNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISP 200
+N L P + + S+ +F L L HN+I ++ + + GL+ LDLS NKL P
Sbjct: 638 YNMLSGYIPKE---IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 201 DDFIGLDSLKMLDISHNLLT 220
L L +D+S+N L+
Sbjct: 695 QAMSALTMLTEIDLSNNNLS 714
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1LSH|A Chain A, Lipid-Protein Interactions In Lipovitellin
Length = 1056
Score = 36.2 bits (82), Expect = 0.013, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 80 LRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121
+R D +A R D+ APP D N V+G+ N+F+L L+ N+
Sbjct: 85 VRFDYSAGRIGDIYAPPQVTDTAVNIVRGILNLFQLSLKKNQ 126
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 107
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 108 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 164
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 104
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 105 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 26/114 (22%)
Query: 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
++ EL L N+ + L L+ +DLS+N++ T+S F + + +
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI------- 84
Query: 171 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LS+N+LR I P F GL SL++L + N ++ + E
Sbjct: 85 -------------------LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 109 VTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L DG L L LDLSHN+L+++ +G ++ + L
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTL---PVLGTLDLSHNQLQSLP---LLG-QTLPALTVLD 106
Query: 167 LQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
LM L++L+L +L + D ++ + L L HN++++L + L+
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALT 103
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
LD+S N+L ++ GL L+ L + N L TL
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 165 LKLQHNEIENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L HN + L + L L LSHN L IS + F+ + +L+ LD+S N L TL
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 223 EE 224
+E
Sbjct: 104 DE 105
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSR---LDLSHNKLRTISPDDFIGLDSVTNI 162
++ + N+ EL L H++IE D + + LS L+LS+N+ ++ + F + +
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-EL 404
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+L ++++ +H L L+LSH+ L S F GL +L+ L++ N
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT---ISPDDF------- 153
N + + EL L + L L+G+ L +L LS NK IS +F
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 154 ---------IG---LDSVTNIFELKLQHNEIENLDGALMGIHGLSR---LDLSHNKLRTI 198
+G L+++ N+ EL L H++IE D + + LS L+LS+N+ ++
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 199 SPDDFIGLDSLKMLDIS 215
+ F L++LD++
Sbjct: 392 KTEAFKECPQLELLDLA 408
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+ +L ++++ +H L L+LSH+ L S F GL ++ + L LQ N
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH---LNLQGNH 460
Query: 172 IENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
+ +L + L L LS L +I F L + +D+SHN LT+
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 34.3 bits (77), Expect = 0.061, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 72 NLKLTKNNLRPDGAALRPIDVCAPPSTLDNL---KNQVQGVTNIFELK---------LQH 119
N+KLT L + P D CA ++ L N+++ + NIF K +
Sbjct: 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSY 653
Query: 120 NEI----ENLDGALMGIHGL--SRLDLSHNKLRTISPDDF-----IGLDSVTNIFELKLQ 168
N+I N+ + G+ S + LS+N+++ + F I ++N +
Sbjct: 654 NKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIP 713
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF--IGLDSLKMLDISHNLLTTL 222
N ++ DG + L+ +DL NKL ++S DDF L L D+S+N ++
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNXDVSYNCFSSF 768
Score = 30.0 bits (66), Expect = 0.96, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 99 LDNLKNQVQGV----TNI--FELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPD 151
LD + N+V+ + TN+ +LKL +N+IE + + L SHNKL+ I P+
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PN 636
Query: 152 DFIGLDSVTNIFELKLQHNEI----ENLDGALMGIHGL--SRLDLSHNKLRTISPDDFIG 205
F SV + +N+I N+ + G+ S + LS+N+++ + F
Sbjct: 637 IF-NAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFAT 695
Query: 206 LDSLKMLDISHNLLTTLEETS 226
+ + +S+NL T++ E S
Sbjct: 696 GSPISTIILSNNLXTSIPENS 716
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHG-LSRLDLSHNKLR 196
L++S N + + D + S++ + L + HN I+ LD ++ + L LDLSHNKL
Sbjct: 26 LNISQNYISELWTSDIL---SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTL 222
IS + LK LD+S N L
Sbjct: 83 KISCHPTVN---LKHLDLSFNAFDAL 105
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 LKLQHNEIENLDGALMGIHG-LSRLDLSHNKLRTIS 149
L + HN I+ LD ++ + L LDLSHNKL IS
Sbjct: 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
L LQ+N I ++ G ++ L LDLS NKL + P+ S + + L++N++
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNNKLVL 228
Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFI 204
++ AL L DL N + DF
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 90
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 70
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSVTNIFELK 166
+++ EL++ N I + G G+ ++ +++ N L P F GL K
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---------K 173
Query: 167 LQHNEIENLDGALMGI-----HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
L + I + L GI L+ L L HNK++ I +D + L L + HN +
Sbjct: 174 LNYLRIS--EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 222 LEETS 226
+E S
Sbjct: 232 IENGS 236
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L LQ+N+I + DG + L L L +NK+ ISP F L + ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 164 --------ELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKML 212
EL++ NEI + ++ G++ + ++L N L++ I F G+ L +
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 213 DISHNLLTTLEE 224
I+ +TT+ +
Sbjct: 177 RIADTNITTIPQ 188
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 91
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 118
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 71
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L LQ+N+I + DG + L L L +NK+ ISP F L + ++
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 164 --------ELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKML 212
EL++ NEI + ++ G++ + ++L N L++ I F G+ L +
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Query: 213 DISHNLLTTLEE 224
I+ +TT+ +
Sbjct: 177 RIADTNITTIPQ 188
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L+L HN I +LD + L LD+SHN+L+ IS + SL+ LD+S N
Sbjct: 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS---CCPMASLRHLDLSFN 131
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 115 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS 149
L+L HN I +LD + L LD+SHN+L+ IS
Sbjct: 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 165 LKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
L L N I L + + L L LSHN++R++ F+ L+ LD+SHN L
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 90
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 141
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 169
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 70
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 89
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 86 ALRPIDVCAPPSTLDNLKNQVQ-----GVTNIFELKLQHNEIENLDGALMGIHGL 135
AL P C+P + LD ++ ++ G+ I ++ L H+ +LDG L + G+
Sbjct: 228 ALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGI 282
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N + +L + L LDLS +++TI + S++++ L L N I+
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQ 91
Query: 174 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK 142
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF---------- 163
L L EI+ + DGA + LS L L+ N +++++ F GL S+ +
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLE 118
Query: 164 -----------ELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 202
EL + HN I++ L + L LDLS NK+++I D
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDLS N LR + F L++LD+S + T+E+
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 71
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
L LQ+N I ++ G ++ L LDLS NKL + P+ S + + L++N++
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNNKLVL 228
Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFI 204
++ AL L DL N + DF
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 104 NQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSVT 160
N +G++++ LKL +N+ L+ GA G+ L L L+ L +S + F L S+
Sbjct: 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 161 NIFELKLQHNEIENLDGA--LMGIHGLSRLDLSHNKLRTISPDDFIGL 206
L L+ N I+ + A + + LDL+ NK+++I +D +
Sbjct: 133 ---MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L + +I N+ + L+RL L+ N L + P + L +L++LD+SHN LT+L
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
++ LDLSHN+LR + P L ++ + L+ N +EN+DG + + L L L +N+
Sbjct: 465 VTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR 519
Query: 195 LR 196
L+
Sbjct: 520 LQ 521
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
++ LDLSHN+LR + P L ++ + L+ N +EN+DG + + L L L +N+
Sbjct: 465 VTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR 519
Query: 195 LR 196
L+
Sbjct: 520 LQ 521
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN---KLRTISPDDF--------- 153
Q T + EL L ++ L + G++ L +L LS N +L IS +F
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 154 ---------IG-LDSVTNIFELKLQHNEIENLDGALMGIHGLSR---LDLSHNKLRTISP 200
+G L+ + N+ L L HN+IE D + + LS L+LSHN+ +
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 201 DDFIGLDSLKMLDIS 215
F L++LD++
Sbjct: 391 QAFKECPQLELLDLA 405
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 115 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N+I L+ G + L+RLDL +N+L + F D +T + +L L N+++
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLTQLSLNDNQLK 91
Query: 174 NLD-GALMGIHGLSRLDLSHNKL 195
++ GA + L+ + L +N
Sbjct: 92 SIPRGAFDNLKSLTHIWLLNNPW 114
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 155 GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
G+ + T + L L N+I L+ G + L+RLDL +N+L + F L L L
Sbjct: 27 GIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 214 ISHNLLTTLEE 224
++ N L ++
Sbjct: 85 LNDNQLKSIPR 95
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+ ++ H ++ +H L L+LSH L T + GL + + L LQ N
Sbjct: 403 LLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH---LNLQGNS 459
Query: 172 IENLDGA------LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ DG+ L + L L LS L +I F GL ++ LD+SHN LT
Sbjct: 460 FQ--DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT 512
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 115 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N+I L+ G + L+RLDL +N+L + F D +T + +L L N+++
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLTQLSLNDNQLK 99
Query: 174 NLD-GALMGIHGLSRLDLSHNKL 195
++ GA + L+ + L +N
Sbjct: 100 SIPRGAFDNLKSLTHIWLLNNPW 122
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 155 GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
G+ + T + L L N+I L+ G + L+RLDL +N+L + F L L L
Sbjct: 35 GIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 92
Query: 214 ISHNLLTTLEE 224
++ N L ++
Sbjct: 93 LNDNQLKSIPR 103
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 115 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N I L+ G + L+RLDL +N+L + F D +T + +L L N+++
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLTQLSLNDNQLK 91
Query: 174 NLD-GALMGIHGLSRLDLSHNKL 195
++ GA + L+ + L +N
Sbjct: 92 SIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 115 LKLQHNEIENLDGALMGIHG----LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
L L++ +E G + L LDLSHN LR D G S +L +
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR-----DAAGAPSCDWPSQLNSLNL 260
Query: 171 EIENLDGALMGIHG-LSRLDLSHNKL-RTISPDDFIGLDSLKM 211
L G+ LS LDLS+N+L R SPD+ + +L +
Sbjct: 261 SFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 22/88 (25%)
Query: 155 GLDSVTNIFELKLQHNEIENLD---------------GALMGIHG-----LSRLDLSHNK 194
G+ TN+ EL L HN+I +L L ++G LSRL L +N+
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNE 117
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
LR D I L +L++L I +N L ++
Sbjct: 118 LR--DTDSLIHLKNLEILSIRNNKLKSI 143
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 112 IFELKLQHNEIENLDG--ALMGIHGLS--RLDLSHNKLR-TISPDDFIGLDSVTNIFELK 166
I L L++ +E G A + G+ LDLSHN LR T++P + S + + L
Sbjct: 199 IQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS-SALNSLN 257
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKM 211
L +E + L L LDLS N+L R PD+ +D+L +
Sbjct: 258 LSFAGLEQVPKGLPA--KLRVLDLSSNRLNRAPQPDELPEVDNLTL 301
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR 196
L L N++ + P F DS+ N+ EL L N++ L G + L+ LDL N+L
Sbjct: 45 LYLHDNQITKLEPGVF---DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTL 222
+ F L LK L + N LT L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTEL 127
>pdb|2YMA|A Chain A, X-Ray Structure Of The Yos9 Dimerization Domain
pdb|2YMA|B Chain B, X-Ray Structure Of The Yos9 Dimerization Domain
Length = 161
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 51 AVSNLNDLPSKTFQELGLQI---VNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
A+SN +++ +Q+ G I ++L+L P+G L+P D C + + ++K++ Q
Sbjct: 43 AMSNWDEITETYYQKFGNAINKMLSLRLVS---LPNGHILQPGDSCVWLAEVVDMKDRFQ 99
Query: 108 GVTNIFELKLQHNEI 122
++ L Q EI
Sbjct: 100 TTLSLNILNSQRAEI 114
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 42 GNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALR 88
G+ S +AV L+D+PS Q L L++ N K + +P A +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQ 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,280,217
Number of Sequences: 62578
Number of extensions: 242519
Number of successful extensions: 959
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 265
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)