Query psy17253
Match_columns 227
No_of_seqs 138 out of 1679
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:16:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.8 2.2E-21 4.8E-26 153.2 3.0 213 5-225 36-340 (498)
2 KOG4194|consensus 99.8 4.6E-21 1E-25 158.2 3.9 175 28-225 156-335 (873)
3 KOG4194|consensus 99.8 1.1E-18 2.4E-23 144.2 8.6 73 6-84 46-119 (873)
4 PLN00113 leucine-rich repeat r 99.7 6.8E-17 1.5E-21 148.0 13.8 180 30-220 78-273 (968)
5 KOG0617|consensus 99.7 5.5E-19 1.2E-23 125.6 -4.4 156 44-225 34-191 (264)
6 PLN00113 leucine-rich repeat r 99.7 1.3E-15 2.8E-20 139.6 13.0 108 108-218 210-319 (968)
7 KOG0444|consensus 99.6 6.7E-18 1.4E-22 141.1 -2.5 192 28-225 110-357 (1255)
8 KOG0472|consensus 99.6 1.7E-17 3.6E-22 131.9 -3.3 111 109-225 182-293 (565)
9 KOG4237|consensus 99.6 3.5E-16 7.7E-21 124.1 1.6 196 16-219 66-358 (498)
10 KOG0472|consensus 99.6 6.8E-16 1.5E-20 122.9 1.4 168 44-224 363-544 (565)
11 KOG0444|consensus 99.6 4.6E-16 1E-20 130.2 -0.2 173 44-225 79-286 (1255)
12 PRK15370 E3 ubiquitin-protein 99.6 4.6E-14 1E-18 124.3 12.1 168 37-224 193-384 (754)
13 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 121.6 7.4 160 41-224 218-405 (754)
14 PRK15387 E3 ubiquitin-protein 99.4 2.2E-12 4.8E-17 113.5 14.2 41 37-82 216-256 (788)
15 PRK15387 E3 ubiquitin-protein 99.4 7.7E-13 1.7E-17 116.3 11.1 102 110-222 342-460 (788)
16 KOG0618|consensus 99.4 5.7E-15 1.2E-19 127.9 -3.1 54 32-87 230-284 (1081)
17 KOG0532|consensus 99.4 1E-14 2.2E-19 120.7 -1.8 166 44-225 76-252 (722)
18 KOG0617|consensus 99.4 1.5E-14 3.2E-19 103.2 -2.7 136 64-225 30-168 (264)
19 KOG0618|consensus 99.4 6.4E-14 1.4E-18 121.5 -1.4 106 108-218 381-487 (1081)
20 PF14580 LRR_9: Leucine-rich r 99.3 1.2E-12 2.7E-17 95.6 1.9 123 44-191 20-148 (175)
21 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4E-16 89.4 5.9 107 110-222 19-128 (175)
22 cd00116 LRR_RI Leucine-rich re 99.2 4.4E-11 9.5E-16 96.4 5.3 176 44-222 82-293 (319)
23 KOG0532|consensus 99.1 4.6E-12 1E-16 105.2 -2.1 166 45-225 52-229 (722)
24 cd00116 LRR_RI Leucine-rich re 99.1 1.2E-10 2.7E-15 93.8 4.6 173 44-219 109-319 (319)
25 KOG1259|consensus 99.1 1.7E-11 3.6E-16 95.0 -0.5 108 110-223 307-415 (490)
26 KOG1259|consensus 99.1 6.7E-11 1.5E-15 91.7 2.1 108 110-224 284-391 (490)
27 COG4886 Leucine-rich repeat (L 99.0 1.7E-10 3.7E-15 95.9 4.5 167 44-224 117-294 (394)
28 PLN03210 Resistant to P. syrin 99.0 4E-09 8.6E-14 98.5 13.4 34 44-79 612-645 (1153)
29 PF13855 LRR_8: Leucine rich r 99.0 2.8E-10 6.1E-15 68.8 3.4 59 161-219 2-61 (61)
30 PF13855 LRR_8: Leucine rich r 99.0 9.9E-10 2.1E-14 66.4 4.5 60 110-172 1-61 (61)
31 PLN03210 Resistant to P. syrin 98.9 2.1E-08 4.6E-13 93.7 13.2 108 109-224 633-742 (1153)
32 KOG3207|consensus 98.9 6.6E-10 1.4E-14 89.9 1.8 38 44-82 147-186 (505)
33 PLN03150 hypothetical protein; 98.9 8.3E-09 1.8E-13 90.4 8.7 110 111-223 419-532 (623)
34 COG4886 Leucine-rich repeat (L 98.8 3E-09 6.5E-14 88.5 4.1 171 47-224 97-272 (394)
35 KOG3207|consensus 98.8 1.1E-09 2.5E-14 88.5 0.1 162 44-225 122-319 (505)
36 KOG1859|consensus 98.7 3.5E-10 7.6E-15 96.8 -6.2 119 88-219 172-291 (1096)
37 PLN03150 hypothetical protein; 98.6 1.3E-07 2.7E-12 83.1 6.5 87 135-224 420-508 (623)
38 KOG1909|consensus 98.5 7.8E-08 1.7E-12 76.0 2.1 38 44-82 93-134 (382)
39 PF12799 LRR_4: Leucine Rich r 98.4 2.9E-07 6.3E-12 51.4 3.1 39 185-224 3-41 (44)
40 PF12799 LRR_4: Leucine Rich r 98.4 5.2E-07 1.1E-11 50.4 3.6 40 110-149 1-40 (44)
41 KOG0531|consensus 98.4 4.5E-08 9.7E-13 82.0 -1.0 36 112-148 142-177 (414)
42 KOG4579|consensus 98.3 3.1E-08 6.7E-13 68.5 -2.7 108 112-223 29-139 (177)
43 KOG1909|consensus 98.3 1.9E-07 4.1E-12 73.9 0.8 94 44-146 31-133 (382)
44 KOG0531|consensus 98.3 2.2E-07 4.8E-12 77.9 1.2 153 44-224 50-203 (414)
45 KOG1644|consensus 98.3 1.5E-06 3.2E-11 64.0 5.2 101 111-215 43-148 (233)
46 KOG1644|consensus 98.3 2.1E-06 4.6E-11 63.3 5.4 124 44-192 20-149 (233)
47 KOG4579|consensus 98.2 5.2E-08 1.1E-12 67.4 -3.4 133 44-198 28-161 (177)
48 KOG1859|consensus 98.1 5.2E-08 1.1E-12 83.9 -5.4 106 111-223 165-270 (1096)
49 KOG4658|consensus 98.1 3.1E-06 6.7E-11 76.7 4.6 106 44-171 546-653 (889)
50 KOG2982|consensus 98.0 7.6E-06 1.7E-10 64.0 3.6 37 184-220 225-262 (418)
51 PRK15386 type III secretion pr 97.8 0.00023 4.9E-09 58.9 10.2 31 44-79 53-83 (426)
52 PF13306 LRR_5: Leucine rich r 97.7 0.00029 6.3E-09 48.8 7.5 32 44-77 13-44 (129)
53 KOG3665|consensus 97.6 4.5E-05 9.7E-10 67.6 3.7 133 44-197 123-264 (699)
54 KOG4658|consensus 97.5 6E-05 1.3E-09 68.5 2.9 85 106-194 567-653 (889)
55 PF13306 LRR_5: Leucine rich r 97.5 0.00065 1.4E-08 47.0 7.1 107 109-224 11-119 (129)
56 KOG3665|consensus 97.4 0.00018 4E-09 63.8 4.8 107 109-220 147-263 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.3 0.00024 5.2E-09 55.2 3.1 144 44-196 31-198 (388)
58 KOG2739|consensus 97.2 0.00014 3E-09 55.8 1.2 100 110-213 43-149 (260)
59 KOG2120|consensus 97.2 1.8E-05 3.9E-10 61.9 -3.6 38 44-82 186-224 (419)
60 COG5238 RNA1 Ran GTPase-activa 97.1 0.00021 4.5E-09 55.5 1.4 166 44-218 93-283 (388)
61 PRK15386 type III secretion pr 97.1 0.0036 7.9E-08 52.0 8.6 32 183-217 156-187 (426)
62 KOG2982|consensus 97.0 0.0007 1.5E-08 53.3 3.4 167 44-213 72-285 (418)
63 KOG2123|consensus 97.0 3.2E-05 6.8E-10 60.0 -4.0 99 109-213 18-123 (388)
64 KOG2739|consensus 96.6 0.0014 3.1E-08 50.4 2.3 86 131-221 41-130 (260)
65 PF00560 LRR_1: Leucine Rich R 96.5 0.0017 3.7E-08 30.2 1.4 20 111-130 1-20 (22)
66 KOG2120|consensus 96.3 0.00049 1.1E-08 54.2 -1.5 153 44-217 211-373 (419)
67 PF13504 LRR_7: Leucine rich r 96.2 0.0033 7.2E-08 27.2 1.3 16 208-223 2-17 (17)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0055 1.2E-07 28.4 1.1 16 162-177 2-17 (22)
69 KOG2123|consensus 95.3 0.00045 9.8E-09 53.8 -5.5 81 132-218 18-99 (388)
70 smart00369 LRR_TYP Leucine-ric 95.3 0.013 2.9E-07 28.3 1.6 19 207-225 2-20 (26)
71 smart00370 LRR Leucine-rich re 95.3 0.013 2.9E-07 28.3 1.6 19 207-225 2-20 (26)
72 smart00369 LRR_TYP Leucine-ric 93.6 0.062 1.4E-06 25.8 1.8 21 44-64 3-23 (26)
73 smart00370 LRR Leucine-rich re 93.6 0.062 1.4E-06 25.8 1.8 21 44-64 3-23 (26)
74 smart00364 LRR_BAC Leucine-ric 92.1 0.11 2.4E-06 25.1 1.4 18 207-224 2-19 (26)
75 KOG0473|consensus 91.1 0.0046 1E-07 47.2 -6.0 86 129-219 38-123 (326)
76 KOG3864|consensus 89.1 0.09 1.9E-06 39.3 -0.6 35 44-79 102-136 (221)
77 smart00365 LRR_SD22 Leucine-ri 85.1 0.86 1.9E-05 22.0 1.8 17 207-223 2-18 (26)
78 KOG4308|consensus 84.9 0.011 2.4E-07 50.5 -8.3 175 45-220 89-303 (478)
79 KOG3864|consensus 84.8 0.11 2.3E-06 38.9 -2.2 80 111-192 102-185 (221)
80 KOG3763|consensus 84.0 0.68 1.5E-05 39.9 1.9 65 108-173 216-283 (585)
81 PF13516 LRR_6: Leucine Rich r 80.5 0.92 2E-05 21.1 0.9 14 207-220 2-15 (24)
82 KOG3763|consensus 79.6 1.2 2.5E-05 38.5 1.8 61 133-196 218-283 (585)
83 KOG1947|consensus 73.4 1.4 3E-05 37.5 0.6 110 109-218 187-306 (482)
84 smart00368 LRR_RI Leucine rich 70.0 4.1 8.8E-05 19.8 1.6 13 208-220 3-15 (28)
85 KOG0473|consensus 70.0 0.09 2E-06 40.3 -6.4 84 109-196 41-124 (326)
86 TIGR00864 PCC polycystin catio 55.1 8.9 0.00019 39.9 2.3 33 49-82 1-33 (2740)
87 KOG4341|consensus 55.1 6.3 0.00014 33.1 1.1 157 44-217 269-436 (483)
88 PF01462 LRRNT: Leucine rich r 37.3 36 0.00077 16.5 1.8 14 8-26 4-17 (28)
89 KOG4341|consensus 37.0 25 0.00053 29.8 1.9 36 44-79 295-331 (483)
90 PF03128 CXCXC: CXCXC repeat; 33.1 23 0.00049 14.2 0.6 10 2-12 4-13 (14)
91 smart00013 LRRNT Leucine rich 28.8 79 0.0017 15.8 2.4 15 7-26 3-17 (33)
92 smart00367 LRR_CC Leucine-rich 23.9 67 0.0015 14.9 1.5 11 183-193 2-12 (26)
93 TIGR00864 PCC polycystin catio 23.0 51 0.0011 34.8 1.7 30 116-145 1-31 (2740)
No 1
>KOG4237|consensus
Probab=99.83 E-value=2.2e-21 Score=153.24 Aligned_cols=213 Identities=23% Similarity=0.440 Sum_probs=145.4
Q ss_pred CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253 5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~ 83 (227)
++|.+|+|.++. +..|.|.. +.+..+|..+++..+.+++..|.|+.+|+.+|+.++ +|+.||+++|.|+. .
T Consensus 36 ~CP~pC~Cs~~~--g~~VdCr~-----~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~-~LRrLdLS~N~Is~I~ 107 (498)
T KOG4237|consen 36 ACPAPCTCSDVE--GGIVDCRG-----KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLH-RLRRLDLSKNNISFIA 107 (498)
T ss_pred cCCCCcccCCCC--CceEEccC-----CCcccCcccCCCcceEEEeccCCcccCChhhccchh-hhceecccccchhhcC
Confidence 567779998543 67899988 778888999999999999999999999999999998 99999999999999 8
Q ss_pred CCCC------------CCCCCCCCcc-hhhchhhhhc-----------------CCCcccEEEccCCCcccccc-cccCC
Q psy17253 84 GAAL------------RPIDVCAPPS-TLDNLKNQVQ-----------------GVTNIFELKLQHNEIENLDG-ALMGI 132 (227)
Q Consensus 84 ~~~~------------~~~~l~~~~~-~~~~~~~~~~-----------------~l~~L~~L~l~~n~l~~l~~-~~~~l 132 (227)
+.+| .+|++..+|. .+.++..... .++++..|.+.+|.++.++. +|..+
T Consensus 108 p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 108 PDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL 187 (498)
T ss_pred hHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch
Confidence 8888 5588888886 3444433222 47788888888887766543 55555
Q ss_pred CCCCEEEcCCCcC-cc-----------cCCCCCCCCC-------------------------------------------
Q psy17253 133 HGLSRLDLSHNKL-RT-----------ISPDDFIGLD------------------------------------------- 157 (227)
Q Consensus 133 ~~L~~L~l~~n~l-~~-----------~~~~~~~~~~------------------------------------------- 157 (227)
.+++.+.+..|.+ .. ..+-.+++..
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence 5555555544441 00 0000000000
Q ss_pred ----CCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 158 ----SVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 158 ----~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.+++|+.+++++|+++.+. .++.+...++.|.+..|++..+...+|.++..|+.|+|.+|+++.+.++
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 2445666666666666664 4556666666666666666666555666666666666666666665544
No 2
>KOG4194|consensus
Probab=99.82 E-value=4.6e-21 Score=158.17 Aligned_cols=175 Identities=26% Similarity=0.445 Sum_probs=111.8
Q ss_pred CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhh
Q psy17253 28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKN 104 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~ 104 (227)
.+.+.+.++....|+. ++++|++++|.|+.+..+.|..+. +|..|.+++|+++. |..+|.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLsrNrittLp~r~Fk---------------- 218 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLSRNRITTLPQRSFK---------------- 218 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecccCcccccCHHHhh----------------
Confidence 3444555555555555 566666666666666666666665 66666666666665 555553
Q ss_pred hhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCC
Q psy17253 105 QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGI 182 (227)
Q Consensus 105 ~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~ 182 (227)
++++|+.|+|.+|+|..+ --.|.++++|+.|.+.+|.+..+..+.|.++.+ +++|+|..|+++.+- +++.++
T Consensus 219 ---~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k---me~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 219 ---RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK---MEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred ---hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecc---cceeecccchhhhhhccccccc
Confidence 246677777777766655 335666666777767777766666666666665 666677777666554 555666
Q ss_pred CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 183 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.+|+.|+++.|.|.++.++.+...++|+.|+|++|++++++++
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 6667777777776666666666666677777777776666654
No 3
>KOG4194|consensus
Probab=99.77 E-value=1.1e-18 Score=144.23 Aligned_cols=73 Identities=21% Similarity=0.382 Sum_probs=53.9
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|... -+.|.+..-..--..++++.++...+.|++++|.+..+....|..++ +|+++.+.+|.++. |.
T Consensus 46 cpa~c~c~~~-----lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~ 119 (873)
T KOG4194|consen 46 CPATCPCNTR-----LLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPR 119 (873)
T ss_pred CCCcCCCCce-----eeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhccc
Confidence 4555777644 57887731111112334666667899999999999999999999998 99999999999987 53
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.72 E-value=6.8e-17 Score=148.02 Aligned_cols=180 Identities=19% Similarity=0.266 Sum_probs=111.1
Q ss_pred ccchhhcccCCCCC--CccEEEeCCCCCC-CCChhhhhcccccccEEEccCCCCCC--CCCCC--------CCCCCC-CC
Q psy17253 30 FGQVVDALQDRFGN--DSISLKIAVSNLN-DLPSKTFQELGLQIVNLKLTKNNLRP--DGAAL--------RPIDVC-AP 95 (227)
Q Consensus 30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~--------~~~~l~-~~ 95 (227)
.+.+...++..+.. +++.|++++|.+. .+|...|..+. +|+.|++++|.+.+ +...+ +.|.+. .+
T Consensus 78 ~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~ 156 (968)
T PLN00113 78 GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI 156 (968)
T ss_pred CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccC
Confidence 33444445555544 7999999999987 68888887887 99999999999876 32222 233332 22
Q ss_pred cchhhchhhhhcCCCcccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-
Q psy17253 96 PSTLDNLKNQVQGVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE- 173 (227)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~- 173 (227)
|. .+..+++|+.|++++|.+.. +|..+..+++|++|++++|.+.+..+..+..+.+ |+.|++++|.+.
T Consensus 157 p~-------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~ 226 (968)
T PLN00113 157 PN-------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSG 226 (968)
T ss_pred Ch-------HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC---ccEEECcCCccCC
Confidence 32 33445677777777776654 4666667777777777777666555544444433 666666666654
Q ss_pred CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 174 ~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
.+|..+..+++|+.|++++|.+....|..++.+++|+.|++++|.+.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 34555555566666666666555444555555555555555555543
No 5
>KOG0617|consensus
Probab=99.68 E-value=5.5e-19 Score=125.60 Aligned_cols=156 Identities=24% Similarity=0.340 Sum_probs=136.4
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+++.|.+++|.++.+|++ +..+. +|+.|++.+|++.+ |..+- .++.|+.|+++-|++
T Consensus 34 ~ITrLtLSHNKl~~vppn-ia~l~-nlevln~~nnqie~lp~~is--------------------sl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPN-IAELK-NLEVLNLSNNQIEELPTSIS--------------------SLPKLRILNVGMNRL 91 (264)
T ss_pred hhhhhhcccCceeecCCc-HHHhh-hhhhhhcccchhhhcChhhh--------------------hchhhhheecchhhh
Confidence 789999999999999987 56676 89999999999876 44332 257899999999999
Q ss_pred ccccccccCCCCCCEEEcCCCcCccc-CCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 123 ENLDGALMGIHGLSRLDLSHNKLRTI-SPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 123 ~~l~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
..+|..|+.++.|++||++.|++..- .|+.|..+.. |+.|++++|.+..+|+.++.+++|++|.+++|.+-.. |.
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---lralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l-pk 167 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---LRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL-PK 167 (264)
T ss_pred hcCccccCCCchhhhhhccccccccccCCcchhHHHH---HHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC-cH
Confidence 99999999999999999999988653 3566666666 9999999999999999999999999999999998877 77
Q ss_pred ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.++.+..|+.|.+++|.++-+|++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChh
Confidence 889999999999999999999985
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.65 E-value=1.3e-15 Score=139.61 Aligned_cols=108 Identities=25% Similarity=0.336 Sum_probs=46.8
Q ss_pred CCCcccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCC
Q psy17253 108 GVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGL 185 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L 185 (227)
.+++|+.|++++|.++. +|..+..+++|+.|++++|.+.+..+..+..+++ |+.|++++|.+. .+|..+..+.+|
T Consensus 210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L 286 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN---LQYLFLYQNKLSGPIPPSIFSLQKL 286 (968)
T ss_pred CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC---CCEEECcCCeeeccCchhHhhccCc
Confidence 34455555555555443 3444555555555555555544433333333332 444444444433 223333334444
Q ss_pred CEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253 186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 218 (227)
+.|++++|.+....|..+..+++|+.|++++|.
T Consensus 287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred CEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 444444444433333333333334444443333
No 7
>KOG0444|consensus
Probab=99.65 E-value=6.7e-18 Score=141.09 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=130.2
Q ss_pred CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCC---
Q psy17253 28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPID--- 91 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~--- 91 (227)
.|.+++.+.+ ..+.. +.-.|++++|+|..||...|.++. .|-.||+++|++.. |+..- +.|.
T Consensus 110 LShNqL~EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLREVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhhhcc-hhhhhhcCcEEEEcccCccccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH
Confidence 3445554433 22222 566778888888888887777776 77777777777765 43211 1111
Q ss_pred --CCCCc--------------chhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253 92 --VCAPP--------------STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 155 (227)
Q Consensus 92 --l~~~~--------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 155 (227)
+..+| ..+.+++..+.++.+|..++++.|.+..+|.++..+++|+.|+|++|.|+.+.. ....
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~ 266 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGE 266 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cHHH
Confidence 11122 233444555556789999999999999999999999999999999999988754 3344
Q ss_pred CCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCcccc--C----------------------CccccCCCCCCCE
Q psy17253 156 LDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT--I----------------------SPDDFIGLDSLKM 211 (227)
Q Consensus 156 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~--~----------------------~~~~~~~~~~L~~ 211 (227)
+.+ |+.|++++|+++.+|..++.+++|+.|.+.+|+++- + -|+.++.+..|+.
T Consensus 267 W~~---lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 267 WEN---LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK 343 (1255)
T ss_pred Hhh---hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence 555 888999999998888888888888888888777642 2 1334445555666
Q ss_pred EEcCCCcCcccCCC
Q psy17253 212 LDISHNLLTTLEET 225 (227)
Q Consensus 212 L~l~~n~l~~lp~~ 225 (227)
|.|+.|.+-++|++
T Consensus 344 L~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 344 LKLDHNRLITLPEA 357 (1255)
T ss_pred hcccccceeechhh
Confidence 66666666666654
No 8
>KOG0472|consensus
Probab=99.61 E-value=1.7e-17 Score=131.91 Aligned_cols=111 Identities=34% Similarity=0.481 Sum_probs=86.1
Q ss_pred CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCE
Q psy17253 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSR 187 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~ 187 (227)
++.|+.++...|-++.+|+.++.+.+|..|++.+|++..++ .|.++.. |.+++++.|++..+|. ....+.++.+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~---L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSL---LKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHH---HHHHHhcccHHHhhHHHHhccccccee
Confidence 56788888888888888888889999999999999988776 5555555 7777788887777773 3457777778
Q ss_pred EeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
||+++|++++. |+.+.-+++|+.||+++|.++++|..
T Consensus 257 LDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 257 LDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred eeccccccccC-chHHHHhhhhhhhcccCCccccCCcc
Confidence 88888888777 66667777777888888888777764
No 9
>KOG4237|consensus
Probab=99.58 E-value=3.5e-16 Score=124.06 Aligned_cols=196 Identities=24% Similarity=0.399 Sum_probs=143.8
Q ss_pred CCCceEEEecCCCCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEE-ccCCCCCC-CCCCC----
Q psy17253 16 PISPIVVECEKMTSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLK-LTKNNLRP-DGAAL---- 87 (227)
Q Consensus 16 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~-l~~n~~~~-~~~~~---- 87 (227)
+.+.++++-+. +.+..+++..|.. +++.||+++|.|+.|.+++|.++. ++..|- +++|+|+. +...|
T Consensus 66 P~~tveirLdq----N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 66 PPETVEIRLDQ----NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCcceEEEecc----CCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHH
Confidence 33444555544 5888888888888 999999999999999999999998 766654 55599999 88888
Q ss_pred -------CCCCCCCCcc-hhhchhhh-----------------hcCCCcccEEEccCCC---------------------
Q psy17253 88 -------RPIDVCAPPS-TLDNLKNQ-----------------VQGVTNIFELKLQHNE--------------------- 121 (227)
Q Consensus 88 -------~~~~l~~~~~-~~~~~~~~-----------------~~~l~~L~~L~l~~n~--------------------- 121 (227)
..+.+..++. .+..++.. +.++..++.+.+..|.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 1111111111 11111111 1112222222222111
Q ss_pred ----------------------------------------cccc-c-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCC
Q psy17253 122 ----------------------------------------IENL-D-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159 (227)
Q Consensus 122 ----------------------------------------l~~l-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 159 (227)
+..+ | ..|..+++|+.|++++|+++.+...+|++...
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~- 299 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE- 299 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh-
Confidence 1111 2 35778999999999999999999999998888
Q ss_pred CcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219 (227)
Q Consensus 160 ~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 219 (227)
+++|.|.+|++..+. +.+.++..|++|++.+|+|+.+.+.+|..+.+|..|.+-+|++
T Consensus 300 --l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 300 --LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred --hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 999999999999886 5678999999999999999999999999999999999999876
No 10
>KOG0472|consensus
Probab=99.56 E-value=6.8e-16 Score=122.88 Aligned_cols=168 Identities=22% Similarity=0.355 Sum_probs=139.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccc-cccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGL-QIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVT 110 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~ 110 (227)
..+.|++++-.++.+|.++|...+. -+..++++.|++.+ |...- +.+.+..+|..+..+ +
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l-------~ 435 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL-------Q 435 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh-------h
Confidence 7889999999999999999987651 27789999999998 65433 666677777766655 7
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEe
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLD 189 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~ 189 (227)
++..|++++|-+..+|..++.+..||.++++.|++...+ ..+..+.. ++.+-.+.|++..++ ..+..+.+|++||
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP-~~~y~lq~---lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLP-ECLYELQT---LETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred cceeeecccchhhhcchhhhhhhhhheecccccccccch-HHHhhHHH---HHHHHhccccccccChHHhhhhhhcceec
Confidence 899999999999999999999999999999999886654 33333333 666667779999997 4589999999999
Q ss_pred CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+.+|.+..+ |..++.|.+|++|++.||+|+ .|.
T Consensus 512 L~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr-~Pr 544 (565)
T KOG0472|consen 512 LQNNDLQQI-PPILGNMTNLRHLELDGNPFR-QPR 544 (565)
T ss_pred cCCCchhhC-ChhhccccceeEEEecCCccC-CCH
Confidence 999999999 668999999999999999999 554
No 11
>KOG0444|consensus
Probab=99.55 E-value=4.6e-16 Score=130.25 Aligned_cols=173 Identities=26% Similarity=0.371 Sum_probs=109.8
Q ss_pred CccEEEeCCCCCC--CCChhhhhcccccccEEEccCCCCCC-CCCC----------CCCCCCCCCcchhhchhhhhcCCC
Q psy17253 44 DSISLKIAVSNLN--DLPSKTFQELGLQIVNLKLTKNNLRP-DGAA----------LRPIDVCAPPSTLDNLKNQVQGVT 110 (227)
Q Consensus 44 ~l~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~----------~~~~~l~~~~~~~~~~~~~~~~l~ 110 (227)
.++.+.++.|++. .+|.+.|. +. .|.+||+++|++++ |... ++.|.+..+|.++. ..+.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~-l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf------inLt 150 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFR-LK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLF------INLT 150 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcc-cc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHH------HhhH
Confidence 4667777777765 56666553 44 57777777777776 4321 15555666665332 2356
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCC----------------------CCcccEEEcC
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS----------------------VTNIFELKLQ 168 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~----------------------~~~L~~l~l~ 168 (227)
.|-.|+|++|+++.+|+.+..+.+|++|.|++|.+.......+..++. +.+|..++++
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 777888888888888877777778888888887654322111111111 2246666777
Q ss_pred CCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 169 ~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.|.+..+|+-+..+.+|+.|++++|+|+.+. -..+.+.++++|+++.|+++.+|..
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhccchHH
Confidence 7777777766667777777777777777652 2345566777777777777777753
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=4.6e-14 Score=124.26 Aligned_cols=168 Identities=25% Similarity=0.333 Sum_probs=104.5
Q ss_pred ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhc
Q psy17253 37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQ 107 (227)
Q Consensus 37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~ 107 (227)
+|...+..++.|++++|.++.+|...+ . +|+.|++++|.++. |.... +.|.+..+|..+.
T Consensus 193 LP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~-nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~------- 261 (754)
T PRK15370 193 IPACIPEQITTLILDNNELKSLPENLQ---G-NIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP------- 261 (754)
T ss_pred CCcccccCCcEEEecCCCCCcCChhhc---c-CCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh-------
Confidence 344455578889999999888887544 3 78888888888887 54322 4555555554331
Q ss_pred CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCC-------------CCCC--CCCcccEEEcCCCCC
Q psy17253 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF-------------IGLD--SVTNIFELKLQHNEI 172 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~~~--~~~~L~~l~l~~n~~ 172 (227)
.+|+.|++++|.++.+|..+. .+|+.|++++|.++.++.... ..++ -.++|+.|++++|.+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence 357777777777776666443 367777777776665432110 0000 013466666666666
Q ss_pred cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+.+|..+. ++|+.|++++|+++.+ |..+ .+.|+.|++++|.++.+|+
T Consensus 338 t~LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 338 TSLPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred ccCChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCH
Confidence 66664332 5677777777777765 3222 2467777777777777775
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.2e-13 Score=121.63 Aligned_cols=160 Identities=21% Similarity=0.295 Sum_probs=100.2
Q ss_pred CCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253 41 FGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTN 111 (227)
Q Consensus 41 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~ 111 (227)
+..+|+.|++++|.++.+|.... . +|+.|++++|.+.. |.... ++|.+..+|..+. .+
T Consensus 218 l~~nL~~L~Ls~N~LtsLP~~l~---~-~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~---------~s 284 (754)
T PRK15370 218 LQGNIKTLYANSNQLTSIPATLP---D-TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLP---------EE 284 (754)
T ss_pred hccCCCEEECCCCccccCChhhh---c-cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccC---------CC
Confidence 33468888888888887775422 2 57777777777766 43222 3444444443221 24
Q ss_pred ccEEEccCCCccccccccc-------------------CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253 112 IFELKLQHNEIENLDGALM-------------------GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 112 L~~L~l~~n~l~~l~~~~~-------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
|+.|++++|+++.+|..+. ..++|+.|++++|.++.++. .+ .++|+.|++++|++
T Consensus 285 L~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~-~l-----~~sL~~L~Ls~N~L 358 (754)
T PRK15370 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-SL-----PPELQVLDVSKNQI 358 (754)
T ss_pred CcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh-hh-----cCcccEEECCCCCC
Confidence 5555666555554433221 11467777777777766542 22 13588999999999
Q ss_pred cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+.+|..+. .+|+.|++++|+++.+++. +. ..|+.|++++|.++++|.
T Consensus 359 ~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 359 TVLPETLP--PTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred CcCChhhc--CCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCch
Confidence 88886542 5788999999998877433 22 257777888888887765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.2e-12 Score=113.51 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=27.7
Q ss_pred ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253 37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
+|..++.+++.|++.+|.++.+|.. .+ +|+.|++++|.++.
T Consensus 216 LP~~l~~~L~~L~L~~N~Lt~LP~l----p~-~Lk~LdLs~N~Lts 256 (788)
T PRK15387 216 LPDCLPAHITTLVIPDNNLTSLPAL----PP-ELRTLEVSGNQLTS 256 (788)
T ss_pred CCcchhcCCCEEEccCCcCCCCCCC----CC-CCcEEEecCCccCc
Confidence 4445555677777777777777642 23 77777777777766
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=7.7e-13 Score=116.34 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=62.5
Q ss_pred CcccEEEccCCCcccccccccC-----------------CCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253 110 TNIFELKLQHNEIENLDGALMG-----------------IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~-----------------l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
.+|+.|++++|+++.+|..... ..+|+.|++++|.+..++.. .++|+.|++++|++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l-------~s~L~~LdLS~N~L 414 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL-------PSELKELMVSGNRL 414 (788)
T ss_pred cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc-------ccCCCEEEccCCcC
Confidence 3677777777777766532111 02345555555555443321 12366667777766
Q ss_pred cCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 173 ~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
+.+|... .+|+.|++++|+++.+ |..+..++.++.|++++|++++.
T Consensus 415 ssIP~l~---~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 415 TSLPMLP---SGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCCcch---hhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCch
Confidence 6665422 3466777777777776 56677788888888888888654
No 16
>KOG0618|consensus
Probab=99.43 E-value=5.7e-15 Score=127.91 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=40.0
Q ss_pred chhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253 32 QVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL 87 (227)
Q Consensus 32 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~ 87 (227)
-+........+.+++++++++|.+..+| +.+.... +|+.+...+|++.. +...+
T Consensus 230 ~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~-nle~l~~n~N~l~~lp~ri~ 284 (1081)
T KOG0618|consen 230 PLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACA-NLEALNANHNRLVALPLRIS 284 (1081)
T ss_pred cceeeccccccccceeeecchhhhhcch-HHHHhcc-cceEecccchhHHhhHHHHh
Confidence 3333333434448999999999999999 6677776 89999999999877 66555
No 17
>KOG0532|consensus
Probab=99.42 E-value=1e-14 Score=120.69 Aligned_cols=166 Identities=23% Similarity=0.377 Sum_probs=134.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI 112 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L 112 (227)
....+|++.|++..+|.++ ..+. .|+.+.+++|++.. +..+. +.|++..+|..++.++ |
T Consensus 76 dt~~aDlsrNR~~elp~~~-~~f~-~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--------L 145 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEA-CAFV-SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--------L 145 (722)
T ss_pred chhhhhccccccccCchHH-HHHH-HHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc--------c
Confidence 5667888888888888763 3444 67788888888877 44322 6777778888877775 8
Q ss_pred cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253 113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 192 (227)
Q Consensus 113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 192 (227)
+.|.+++|+++.+|..++.+..|..|+.+.|.+..++.. +.++. +|+.+++.+|++..+|+.+..+ .|..||++.
T Consensus 146 kvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~---slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 146 KVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLT---SLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred eeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHH---HHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence 999999999999988888778899999999999887653 34444 4899999999999998767644 488999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
|++..+ |-.|.+|+.|+.|-|.+|++++.|.+
T Consensus 221 Nkis~i-Pv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 221 NKISYL-PVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred Cceeec-chhhhhhhhheeeeeccCCCCCChHH
Confidence 999999 78899999999999999999998864
No 18
>KOG0617|consensus
Probab=99.39 E-value=1.5e-14 Score=103.20 Aligned_cols=136 Identities=25% Similarity=0.378 Sum_probs=113.1
Q ss_pred hcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCC
Q psy17253 64 QELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 142 (227)
Q Consensus 64 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 142 (227)
..+. .++.|.+++|+++- ++.+ . .+.+|+.|++.+|+|+++|..+..++.|+.|+++.
T Consensus 30 f~~s-~ITrLtLSHNKl~~vppni-------------a-------~l~nlevln~~nnqie~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 30 FNMS-NITRLTLSHNKLTVVPPNI-------------A-------ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cchh-hhhhhhcccCceeecCCcH-------------H-------HhhhhhhhhcccchhhhcChhhhhchhhhheecch
Confidence 3444 67788899998875 4433 2 25789999999999999999999999999999999
Q ss_pred CcCcccCCCCCCCCCCCCcccEEEcCCCCCc--CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 143 n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
|++.-.+. .|+.++. |+.|++.+|++. .+|+.+..+..|+.|.+++|-+..+ |..++.+++|+.|.+..|.+-
T Consensus 89 nrl~~lpr-gfgs~p~---levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 89 NRLNILPR-GFGSFPA---LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhhhcCcc-ccCCCch---hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC-ChhhhhhcceeEEeeccCchh
Confidence 99876654 4555554 999999999987 5788888899999999999999877 667899999999999999998
Q ss_pred ccCCC
Q psy17253 221 TLEET 225 (227)
Q Consensus 221 ~lp~~ 225 (227)
++|.+
T Consensus 164 ~lpke 168 (264)
T KOG0617|consen 164 SLPKE 168 (264)
T ss_pred hCcHH
Confidence 88854
No 19
>KOG0618|consensus
Probab=99.35 E-value=6.4e-14 Score=121.54 Aligned_cols=106 Identities=28% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCC
Q psy17253 108 GVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~ 186 (227)
++.+|+.|+|++|++..+|+ .+..+..|+.|+|++|+++.++ .++..+.. |+.|....|++..+| .+..++.|+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~---L~tL~ahsN~l~~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGR---LHTLRAHSNQLLSFP-ELAQLPQLK 455 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhh---hHHHhhcCCceeech-hhhhcCcce
Confidence 56677777777777776654 4456666777777777776665 34444444 666667777776666 355667788
Q ss_pred EEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 218 (227)
.+|++.|.++..........+.|++||++||.
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 88888888877643333334788888888886
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=1.2e-12 Score=95.58 Aligned_cols=123 Identities=22% Similarity=0.362 Sum_probs=45.1
Q ss_pred CccEEEeCCCCCCCCChhhhh-cccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
++++|++++|.|+.+.. +. .+. +|+.|++++|.++. ++++ ..++.|+.|++++|+|
T Consensus 20 ~~~~L~L~~n~I~~Ie~--L~~~l~-~L~~L~Ls~N~I~~----------------l~~l----~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN--LGATLD-KLEVLDLSNNQITK----------------LEGL----PGLPRLKTLDLSNNRI 76 (175)
T ss_dssp ----------------S----TT-T-T--EEE-TTS--S------------------TT--------TT--EEE--SS--
T ss_pred ccccccccccccccccc--hhhhhc-CCCEEECCCCCCcc----------------ccCc----cChhhhhhcccCCCCC
Confidence 67888888888887754 33 344 78888888888774 1111 1256788888888888
Q ss_pred ccccccc-cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCEEeCC
Q psy17253 123 ENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLS 191 (227)
Q Consensus 123 ~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~ 191 (227)
+.+...+ ..+++|+.|.+++|+|..+. .+..+..+++|+.|++.+|.+...+. .+..+++|+.||-.
T Consensus 77 ~~i~~~l~~~lp~L~~L~L~~N~I~~l~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 77 SSISEGLDKNLPNLQELYLSNNKISDLN--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -S-CHHHHHH-TT--EEE-TTS---SCC--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CccccchHHhCCcCCEEECcCCcCCChH--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8775444 35778888888888876653 34445556668888888887764442 23566777777643
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.9e-11 Score=89.41 Aligned_cols=107 Identities=26% Similarity=0.430 Sum_probs=43.0
Q ss_pred CcccEEEccCCCccccccccc-CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh-cCCCCCCE
Q psy17253 110 TNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL-MGIHGLSR 187 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~L~~ 187 (227)
..++.|+|.+|.|+.+.. +. .+.+|+.|++++|.|+.+. . +..++.|+.|++++|.++.+.+.+ ..+++|+.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~---l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--G---LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S--T--T-------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--C---ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 457889999999988754 44 5788999999999998764 2 344555999999999999886544 46789999
Q ss_pred EeCCCCccccCC-ccccCCCCCCCEEEcCCCcCccc
Q psy17253 188 LDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 188 l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
|++++|+|..+. -..+..+++|+.|++.+|+++.-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999998764 24677889999999999998754
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=4.4e-11 Score=96.44 Aligned_cols=176 Identities=23% Similarity=0.244 Sum_probs=94.0
Q ss_pred CccEEEeCCCCCCCCChhhhhccccc---ccEEEccCCCCCC-CCC-----------CC-----CCCCCCCCcchhhchh
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQ---IVNLKLTKNNLRP-DGA-----------AL-----RPIDVCAPPSTLDNLK 103 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~---L~~L~l~~n~~~~-~~~-----------~~-----~~~~l~~~~~~~~~~~ 103 (227)
+++.|++++|.+.......+..+. . |+.|++++|++.. ... .+ ..+.+.. .....+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--~~~~~~~ 158 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLL-RSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--ASCEALA 158 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHh-ccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc--hHHHHHH
Confidence 688888888888765555565554 4 8888888887762 110 00 1111110 1112223
Q ss_pred hhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCch-
Q psy17253 104 NQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENLD- 176 (227)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~- 176 (227)
..+.++++|+.|++++|.++. ++..+..+++|+.|++++|.+.......+. ....+++|+.|++++|.++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 333445566677776666652 233344455677777777666533221111 1223344777777777665321
Q ss_pred hhh-c----CCCCCCEEeCCCCccccCC----ccccCCCCCCCEEEcCCCcCccc
Q psy17253 177 GAL-M----GIHGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 177 ~~~-~----~~~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
..+ . ....|+.+++++|.++... ...+..++.|+.+++++|.+..-
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 111 1 1356777777777665211 22344456677777777776643
No 23
>KOG0532|consensus
Probab=99.11 E-value=4.6e-12 Score=105.19 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=134.7
Q ss_pred ccEEEeCCCCCCCCChhhhhcccc-cccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGL-QIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI 112 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~-~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L 112 (227)
...|.+++-.+..+|..++. +.. .....|++.|++.+ |.+.- ..|.++.+|..+..+ ..|
T Consensus 52 sg~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L-------~~l 123 (722)
T KOG0532|consen 52 SGRLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNL-------EAL 123 (722)
T ss_pred hcccccccchhhcCCCcccc-ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhh-------hHH
Confidence 45678888889999888776 432 34457999999998 54322 667788888777766 779
Q ss_pred cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253 113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 192 (227)
Q Consensus 113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 192 (227)
++++++.|+++.+|..+..++ |+.|-+++|+++.++. .++.... |..++++.|.+..+|.-++++.+|+.|.++.
T Consensus 124 t~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~-~ig~~~t---l~~ld~s~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 124 TFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE-EIGLLPT---LAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc-ccccchh---HHHhhhhhhhhhhchHHhhhHHHHHHHHHhh
Confidence 999999999999998887775 8899999999988765 3444444 8999999999999998899999999999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
|++..+ |..+..++ |..||++.|++.+||-.
T Consensus 199 n~l~~l-p~El~~Lp-Li~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 199 NHLEDL-PEELCSLP-LIRLDFSCNKISYLPVD 229 (722)
T ss_pred hhhhhC-CHHHhCCc-eeeeecccCceeecchh
Confidence 999998 55566554 88999999999999965
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.2e-10 Score=93.79 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=109.6
Q ss_pred CccEEEeCCCCCCCCCh----hhhhcc-cccccEEEccCCCCCC-CCC----CC-----------CCCCCCCCcchhhch
Q psy17253 44 DSISLKIAVSNLNDLPS----KTFQEL-GLQIVNLKLTKNNLRP-DGA----AL-----------RPIDVCAPPSTLDNL 102 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~----~~~~~~-~~~L~~L~l~~n~~~~-~~~----~~-----------~~~~l~~~~~~~~~~ 102 (227)
++++|++++|.+..... ..+... + .|+.|++++|.+.. ... .+ ..+.+.. ..+..+
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l 185 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--AGIRAL 185 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch--HHHHHH
Confidence 37788888887763221 223344 4 67888888887773 110 11 1111111 122223
Q ss_pred hhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-C-CCCCcccEEEcCCCCCcC-
Q psy17253 103 KNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-L-DSVTNIFELKLQHNEIEN- 174 (227)
Q Consensus 103 ~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~-~~~~~L~~l~l~~n~~~~- 174 (227)
...+...++|+.|++++|.++. +...+..+++|+.|++++|.+.......+.. + ...+.|+.|++++|.++.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~ 265 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265 (319)
T ss_pred HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcH
Confidence 3334456799999999999874 3455677899999999999887532222211 1 012459999999999862
Q ss_pred ----chhhhcCCCCCCEEeCCCCccccCC----ccccCCC-CCCCEEEcCCCcC
Q psy17253 175 ----LDGALMGIHGLSRLDLSHNKLRTIS----PDDFIGL-DSLKMLDISHNLL 219 (227)
Q Consensus 175 ----~~~~~~~~~~L~~l~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~n~l 219 (227)
+...+..+++|+.+++++|.++... ...+... +.++.+++..|++
T Consensus 266 ~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 266 GAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2344566689999999999998653 2334444 6788999988864
No 25
>KOG1259|consensus
Probab=99.07 E-value=1.7e-11 Score=94.98 Aligned_cols=108 Identities=31% Similarity=0.364 Sum_probs=54.8
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEe
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~ 189 (227)
+.++.|++++|.|..+.. +..+++|+.||+++|.++.+.. . -.++.+++.|.++.|.+..+.+ +..+-+|..||
T Consensus 307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G-w---h~KLGNIKtL~La~N~iE~LSG-L~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVG-W---HLKLGNIKTLKLAQNKIETLSG-LRKLYSLVNLD 380 (490)
T ss_pred cceeEEeccccceeeehh-hhhcccceEeecccchhHhhhh-h---HhhhcCEeeeehhhhhHhhhhh-hHhhhhheecc
Confidence 455566666665555433 4555556666666665544321 1 1122235555566655544422 33444455556
Q ss_pred CCCCccccCCc-cccCCCCCCCEEEcCCCcCcccC
Q psy17253 190 LSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 190 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+++|+|..++. ..++.++.|+++.+.+|++..+|
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 66665554431 23455556666666666655554
No 26
>KOG1259|consensus
Probab=99.05 E-value=6.7e-11 Score=91.70 Aligned_cols=108 Identities=31% Similarity=0.396 Sum_probs=92.3
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEe
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~ 189 (227)
..|+.++|++|.|+.+..++.-.+.++.|+++.|.+..+.. ++.+. +|+.|++++|.+.++.++-..+.++++|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~---~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELP---QLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcc---cceEeecccchhHhhhhhHhhhcCEeeee
Confidence 56899999999999998888888999999999999987642 44444 49999999999999988777888999999
Q ss_pred CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+++|.+... +.+..+-+|..||+.+|++..+.+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHH
Confidence 999999776 456778889999999999876654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.7e-10 Score=95.92 Aligned_cols=167 Identities=26% Similarity=0.380 Sum_probs=106.8
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI 112 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L 112 (227)
.++.|++.++.+.+++......-. +|+.|++++|.+.. +.... ..+.+..+|.. .+..+.+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-------~~~~~~L 188 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-------LSNLSNL 188 (394)
T ss_pred ceeEEecCCcccccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh-------hhhhhhh
Confidence 466677777777776653221101 56777777777665 32211 22222222221 1134677
Q ss_pred cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253 113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 192 (227)
Q Consensus 113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 192 (227)
+.|++++|.++.+|........|+.+.+++|.+.... ..+. ++..+..+.+..|++..++..+..+..++.|++++
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~-~~~~---~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL-SSLS---NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecc-hhhh---hcccccccccCCceeeeccchhccccccceecccc
Confidence 7788888887777775545556777777777533222 1222 33346777788888777666677788899999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
|.++.+.. ++.+..++.|++++|.+..+++
T Consensus 265 n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 265 NQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccc--ccccCccCEEeccCccccccch
Confidence 99999854 8888999999999998876654
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=4e-09 Score=98.48 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=19.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN 79 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 79 (227)
+++.|+++++.+..++.. +..++ +|+.|+++++.
T Consensus 612 ~L~~L~L~~s~l~~L~~~-~~~l~-~Lk~L~Ls~~~ 645 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDG-VHSLT-GLRNIDLRGSK 645 (1153)
T ss_pred CCcEEECcCccccccccc-cccCC-CCCEEECCCCC
Confidence 566666666666555543 34444 56666666543
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.8e-10 Score=68.82 Aligned_cols=59 Identities=37% Similarity=0.623 Sum_probs=46.0
Q ss_pred cccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253 161 NIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219 (227)
Q Consensus 161 ~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 219 (227)
+|+.|++++|+++.+| ..+..+++|++|++++|+++.+.+.+|.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4777788888777776 4667778888888888888887777888888888888888764
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=9.9e-10 Score=66.42 Aligned_cols=60 Identities=32% Similarity=0.547 Sum_probs=45.6
Q ss_pred CcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
++|+.|++++|+++.+| ..|..+++|++|++++|.++.++++.|.++++ |+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~---L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPN---LRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTT---ESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCC---CCEEeCcCCcC
Confidence 35778888888888875 46777888888888888888877777766666 77888887764
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.91 E-value=2.1e-08 Score=93.69 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCcccEEEccCCC-cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCC-CCcCchhhhcCCCCCC
Q psy17253 109 VTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENLDGALMGIHGLS 186 (227)
Q Consensus 109 l~~L~~L~l~~n~-l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~ 186 (227)
+++|+.|+++++. +..+|. +..+++|+.|++.+|......+..+..+.+ |+.|++++| .++.+|..+ .+.+|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~---L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK---LEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC---CCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 4566666666543 344443 555566666666655422222333333333 666666654 355555433 455666
Q ss_pred EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.|++++|......|.. ..+|+.|++++|.+..+|.
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS 742 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccc
Confidence 6666665422211221 2456667777777766664
No 32
>KOG3207|consensus
Probab=98.88 E-value=6.6e-10 Score=89.87 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=22.1
Q ss_pred CccEEEeCCCCCCCC--ChhhhhcccccccEEEccCCCCCC
Q psy17253 44 DSISLKIAVSNLNDL--PSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~--~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
+++.||++.|-+..+ -......++ +|+.|+++.|++..
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSN 186 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccC
Confidence 466677777765543 222334454 67777777776654
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=8.3e-09 Score=90.44 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=90.3
Q ss_pred cccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEE
Q psy17253 111 NIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRL 188 (227)
Q Consensus 111 ~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l 188 (227)
.++.|+|++|.+++ +|..+..+++|+.|+|++|.+.+..+..+..+.. |+.|++++|+++ .+|..+..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~---L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS---LEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCC---CCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 37889999999986 6888999999999999999998777766666655 999999999988 678888999999999
Q ss_pred eCCCCccccCCccccCCC-CCCCEEEcCCCc-CcccC
Q psy17253 189 DLSHNKLRTISPDDFIGL-DSLKMLDISHNL-LTTLE 223 (227)
Q Consensus 189 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~-l~~lp 223 (227)
++++|+++...|..++.. .++..+++.+|. +...|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999987767766653 456788888886 44443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=3e-09 Score=88.50 Aligned_cols=171 Identities=28% Similarity=0.425 Sum_probs=100.5
Q ss_pred EEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc---hhhchhhhhcCCCcccEEEccCCC
Q psy17253 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS---TLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 47 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~---~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
.++...+.+..-... ..... .+..|++.+|.+.. ++...... .+..+.. .+..++..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchh-hhccc-ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 466677766332222 33344 79999999999988 55443221 2222222 122222223445666666666666
Q ss_pred cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
+..+|......+.|+.|++++|.+..++.. ..... .|+.+.+++|.+...+..+..+.++..+.+.+|++..+ +.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~---~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLS---ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchh-hhhhh---hhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cc
Confidence 666655444556666666666666655432 11111 25666666665444444455556666666777766654 45
Q ss_pred ccCCCCCCCEEEcCCCcCcccCC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.++.++.++.|++++|.+++++.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred hhccccccceecccccccccccc
Confidence 67778889999999999998875
No 35
>KOG3207|consensus
Probab=98.78 E-value=1.1e-09 Score=88.53 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=96.6
Q ss_pred CccEEEeCCCCCCCCCh-hhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPS-KTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+|+.+.+.++.+...+. .....++ .++.||+++|-+. .+....++..++++|+.|+++.|.+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~-~v~~LdLS~NL~~----------------nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILP-NVRDLDLSRNLFH----------------NWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhhheeecCccccccchhhhhhhCC-cceeecchhhhHH----------------hHHHHHHHHHhcccchhcccccccc
Confidence 46666777766665543 3344454 7777777777765 3334444555666777777776665
Q ss_pred ccc---------------------------cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc
Q psy17253 123 ENL---------------------------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175 (227)
Q Consensus 123 ~~l---------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 175 (227)
... .-....+++|+.|.+..|............ +..|+.|+|++|++...
T Consensus 185 ~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 185 SNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDF 261 (505)
T ss_pred cCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCccccc
Confidence 432 111223445555555555311111111111 23477888888887766
Q ss_pred h--hhhcCCCCCCEEeCCCCccccCC-ccc-----cCCCCCCCEEEcCCCcCcccCCC
Q psy17253 176 D--GALMGIHGLSRLDLSHNKLRTIS-PDD-----FIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 176 ~--~~~~~~~~L~~l~l~~n~l~~~~-~~~-----~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
+ ...+.++.|..|+++.+.+.++. ++. ....++|+.|++..|+++.++..
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 6 34467788888888888887653 222 34568899999999998877653
No 36
>KOG1859|consensus
Probab=98.67 E-value=3.5e-10 Score=96.80 Aligned_cols=119 Identities=30% Similarity=0.369 Sum_probs=68.7
Q ss_pred CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEc
Q psy17253 88 RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167 (227)
Q Consensus 88 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l 167 (227)
++|.+..++.++..+ +.++.|+|++|+++.+. .+..++.|+.|||+.|.+..++.-...++. |..|++
T Consensus 172 syN~L~~mD~SLqll-------~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~----L~~L~l 239 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLL-------PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK----LQLLNL 239 (1096)
T ss_pred chhhHHhHHHHHHHH-------HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh----heeeee
Confidence 455544444444433 56777777777766655 456666777777777776665432222221 666667
Q ss_pred CCCCCcCchhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcC
Q psy17253 168 QHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLL 219 (227)
Q Consensus 168 ~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l 219 (227)
.+|.++.+.+ +..+.+|+.||++.|-+.+.. ...+..+..|+.|.|.||++
T Consensus 240 rnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7776665533 455666677777777655432 12344455566667777665
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=1.3e-07 Score=83.08 Aligned_cols=87 Identities=30% Similarity=0.446 Sum_probs=76.0
Q ss_pred CCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEE
Q psy17253 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213 (227)
Q Consensus 135 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~ 213 (227)
++.|+|.+|.+.+..+..+..+.+ |+.|++++|.+. .+|..+..+++|+.|++++|+++...|..++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~---L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRH---LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCC---CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 778999999998877776666655 999999999997 6788889999999999999999987789999999999999
Q ss_pred cCCCcCc-ccCC
Q psy17253 214 ISHNLLT-TLEE 224 (227)
Q Consensus 214 l~~n~l~-~lp~ 224 (227)
+++|.++ .+|.
T Consensus 497 Ls~N~l~g~iP~ 508 (623)
T PLN03150 497 LNGNSLSGRVPA 508 (623)
T ss_pred CcCCcccccCCh
Confidence 9999987 4553
No 38
>KOG1909|consensus
Probab=98.45 E-value=7.8e-08 Score=76.01 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.5
Q ss_pred CccEEEeCCCCCCCCChhhhhc----ccccccEEEccCCCCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQE----LGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~----~~~~L~~L~l~~n~~~~ 82 (227)
++++|++|+|-+..-....|.. .. .|++|.+.+|.+..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGP 134 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCCh
Confidence 7999999999887433333332 33 68889999999876
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=2.9e-07 Score=51.38 Aligned_cols=39 Identities=31% Similarity=0.608 Sum_probs=17.8
Q ss_pred CCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 185 L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
|+.|++++|+|+.+ +..++.+++|+.|++++|+++++++
T Consensus 3 L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 3 LEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp -SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred ceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCcC
Confidence 44444444444444 2234445555555555555555444
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=5.2e-07 Score=50.37 Aligned_cols=40 Identities=38% Similarity=0.537 Sum_probs=30.6
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccC
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 149 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~ 149 (227)
++|++|++++|+|+.+|+.+..+++|+.|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3678888888888888877888888888888888887653
No 41
>KOG0531|consensus
Probab=98.37 E-value=4.5e-08 Score=82.00 Aligned_cols=36 Identities=39% Similarity=0.557 Sum_probs=15.7
Q ss_pred ccEEEccCCCcccccccccCCCCCCEEEcCCCcCccc
Q psy17253 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 148 (227)
Q Consensus 112 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 148 (227)
|+.|++++|.|..+.. +..+..|+.+++++|.+..+
T Consensus 142 L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 142 LKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred hhhheeccCcchhccC-CccchhhhcccCCcchhhhh
Confidence 4444444444444332 22244444444444444443
No 42
>KOG4579|consensus
Probab=98.31 E-value=3.1e-08 Score=68.48 Aligned_cols=108 Identities=24% Similarity=0.310 Sum_probs=51.8
Q ss_pred ccEEEccCCCcccccccc---cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEE
Q psy17253 112 IFELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL 188 (227)
Q Consensus 112 L~~L~l~~n~l~~l~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l 188 (227)
+..++|+.|.+-.++..+ .....|..++|++|.+...++..-. .++.++.+++..|.+..+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~---kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI---KFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhh---ccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 334455555544443322 2223444455555555544433211 1222555555555555555445555555555
Q ss_pred eCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+++.|++... |..+..+.++..|+..+|.+-.||
T Consensus 106 Nl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 106 NLRFNPLNAE-PRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccccCccccc-hHHHHHHHhHHHhcCCCCccccCc
Confidence 5555555544 333333555555555555554444
No 43
>KOG1909|consensus
Probab=98.29 E-value=1.9e-07 Score=73.91 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=48.0
Q ss_pred CccEEEeCCCCCCCC----ChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccC
Q psy17253 44 DSISLKIAVSNLNDL----PSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH 119 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 119 (227)
.++.|++++|.+..- -...+...+ .|+..++++ .|.+.....+|..+-.+-+-+.+.+.|+.|+||+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd--------~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSD--------MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHh--------hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 577788888877632 222333343 455544443 2233333444555555555455555677777776
Q ss_pred CCccc-----ccccccCCCCCCEEEcCCCcCc
Q psy17253 120 NEIEN-----LDGALMGIHGLSRLDLSHNKLR 146 (227)
Q Consensus 120 n~l~~-----l~~~~~~l~~L~~L~l~~n~l~ 146 (227)
|-+.. +..-+..+..|+.|.+.+|++.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 65542 1122333445555555555543
No 44
>KOG0531|consensus
Probab=98.29 E-value=2.2e-07 Score=77.86 Aligned_cols=153 Identities=27% Similarity=0.377 Sum_probs=105.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
..+.++...+.+...... ...+. .++.+.+..|.+.. ..+.+..+.+++.|++.+|.|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~-~l~~l~l~~n~i~~-------------------~~~~l~~~~~l~~l~l~~n~i~ 108 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLT-SLKELNLRQNLIAK-------------------ILNHLSKLKSLEALDLYDNKIE 108 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhH-hHHhhccchhhhhh-------------------hhcccccccceeeeeccccchh
Confidence 556666666654433332 13333 56666677766653 1111224578899999999988
Q ss_pred cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCc-cc
Q psy17253 124 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DD 202 (227)
Q Consensus 124 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~ 202 (227)
.+...+..+++|++|+++.|.|+.+.. + ..++.|+.|++.+|.+..+.. +..+..|+.+++++|.+..+.. .
T Consensus 109 ~i~~~l~~~~~L~~L~ls~N~I~~i~~--l---~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~- 181 (414)
T KOG0531|consen 109 KIENLLSSLVNLQVLDLSFNKITKLEG--L---STLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE- 181 (414)
T ss_pred hcccchhhhhcchheeccccccccccc--h---hhccchhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-
Confidence 877667778899999999999887642 2 333448889999999887764 4457888899999998888754 2
Q ss_pred cCCCCCCCEEEcCCCcCcccCC
Q psy17253 203 FIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
...+..++.+.+.+|.+..+..
T Consensus 182 ~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 182 LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred hhhccchHHHhccCCchhcccc
Confidence 4667778888888888776643
No 45
>KOG1644|consensus
Probab=98.28 E-value=1.5e-06 Score=64.05 Aligned_cols=101 Identities=29% Similarity=0.329 Sum_probs=56.4
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEE
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRL 188 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l 188 (227)
+...++|++|.+..++. |..++.|++|.+..|.|+.+.+.--..++ +|..|.+.+|.++.+. ..+..+++|+.|
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p---~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLP---NLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhcc---ccceEEecCcchhhhhhcchhccCCcccee
Confidence 45556666666555433 55556666666666666666554322222 3666666666666553 234555666666
Q ss_pred eCCCCccccCC---ccccCCCCCCCEEEcC
Q psy17253 189 DLSHNKLRTIS---PDDFIGLDSLKMLDIS 215 (227)
Q Consensus 189 ~l~~n~l~~~~---~~~~~~~~~L~~L~l~ 215 (227)
.+-+|.+.+.. ...+..+++|+.||.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehh
Confidence 66666665432 2345556666666644
No 46
>KOG1644|consensus
Probab=98.25 E-value=2.1e-06 Score=63.26 Aligned_cols=124 Identities=24% Similarity=0.308 Sum_probs=81.1
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
.=+++++++..+..+.. ++....+...+|+++|.+.. +. + .+++.|.+|.+.+|+|
T Consensus 20 ~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l~~-----------------l----p~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKLDN-----------------L----PHLPRLHTLLLNNNRI 76 (233)
T ss_pred cccccccccccccchhh--ccccccccceecccccchhhccc-----------------C----CCccccceEEecCCcc
Confidence 34567777776665544 22221256677888887653 11 1 1357788888888888
Q ss_pred ccccccccCC-CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCEEeCCC
Q psy17253 123 ENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSH 192 (227)
Q Consensus 123 ~~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~~ 192 (227)
+.+.+.+..+ ++|+.|.+.+|.|..+. .+..+..++.|+.|.+-+|.+..-.. .+..++++++||...
T Consensus 77 t~I~p~L~~~~p~l~~L~LtnNsi~~l~--dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 77 TRIDPDLDTFLPNLKTLILTNNSIQELG--DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeccchhhhccccceEEecCcchhhhh--hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8886555544 67888888888887654 34445555668888888888775442 246678888888765
No 47
>KOG4579|consensus
Probab=98.21 E-value=5.2e-08 Score=67.37 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=87.8
Q ss_pred CccEEEeCCCCCCCCChhhhhccc-ccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
.+..++++.|.+..++........ -.|+..++++|.+.. +|..+.. .++.++.+++++|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~------------fp~kft~------kf~t~t~lNl~~nei 89 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK------------FPKKFTI------KFPTATTLNLANNEI 89 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh------------CCHHHhh------ccchhhhhhcchhhh
Confidence 466788888888877654333222 046667888888775 1211111 246788899999999
Q ss_pred ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccC
Q psy17253 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 198 (227)
Q Consensus 123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~ 198 (227)
.++|..+..++.|+.|++..|.+...+. .+..+.+ +..|+...|.+-.+|-.+..-......++.++.+.+-
T Consensus 90 sdvPeE~Aam~aLr~lNl~~N~l~~~p~-vi~~L~~---l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 90 SDVPEELAAMPALRSLNLRFNPLNAEPR-VIAPLIK---LDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred hhchHHHhhhHHhhhcccccCccccchH-HHHHHHh---HHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence 9998888899999999999998876643 3333444 7778888888888874343333333444455555544
No 48
>KOG1859|consensus
Probab=98.15 E-value=5.2e-08 Score=83.87 Aligned_cols=106 Identities=27% Similarity=0.337 Sum_probs=86.4
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeC
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l 190 (227)
.|...+.++|.+..+..++.-++.++.|+|++|+++... .+ ..++.|++||+++|.++.+|..-...++|..|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~L---r~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NL---RRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HH---Hhcccccccccccchhccccccchhhhhheeeee
Confidence 466778889999888888888899999999999998765 34 3445599999999999999854344455999999
Q ss_pred CCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
++|-++.+ ..+.++++|..||++.|-+.+..
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcch
Confidence 99999876 34678899999999999876643
No 49
>KOG4658|consensus
Probab=98.11 E-value=3.1e-06 Score=76.67 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=81.2
Q ss_pred CccEEEeCCCC--CCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVSN--LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
++++|-+..|. +..++.+.|..++ .|+.||+++|. ++..+|+.++.+-+|++|+++++.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~------------------~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNS------------------SLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCC------------------ccCcCChHHhhhhhhhcccccCCC
Confidence 69999999987 7888888899998 99999999976 233334444455789999999999
Q ss_pred cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC
Q psy17253 122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171 (227)
Q Consensus 122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 171 (227)
+..+|..+..+..|.+|++..+.-....++....+.+ |+.|.+....
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~---Lr~L~l~~s~ 653 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS---LRVLRLPRSA 653 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhccc---ccEEEeeccc
Confidence 9999999999999999999877644444444433544 7777775554
No 50
>KOG2982|consensus
Probab=97.96 E-value=7.6e-06 Score=63.95 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=22.1
Q ss_pred CCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCc
Q psy17253 184 GLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 184 ~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~ 220 (227)
.+.-|+++.++|..+. -+++.+++.|..|.+..|++.
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3334555555555543 245667777777777777653
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.00023 Score=58.92 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=23.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN 79 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 79 (227)
+++.|++++|.|..+|. ++.+|+.|.++++.
T Consensus 53 ~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~ 83 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-----LPNELTEITIENCN 83 (426)
T ss_pred CCCEEEeCCCCCcccCC-----CCCCCcEEEccCCC
Confidence 68899999998888872 33478899988744
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.66 E-value=0.00029 Score=48.84 Aligned_cols=32 Identities=6% Similarity=0.243 Sum_probs=12.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTK 77 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~ 77 (227)
+++.+.+.. .+..++..+|.... .++.+.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~ 44 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCT-SLKSINFPN 44 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-T-T-SEEEESS
T ss_pred CCCEEEECC-CeeEeChhhccccc-ccccccccc
Confidence 345555543 34455555555544 455555444
No 53
>KOG3665|consensus
Probab=97.64 E-value=4.5e-05 Score=67.59 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=72.4
Q ss_pred CccEEEeCCCCC-C-CCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVSNL-N-DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~~l-~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
+|+.|+|++... . ..+...-.-++ +|+.|.+++-.+.. +.+-.+...+++|..||+++++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LP-sL~sL~i~~~~~~~-----------------~dF~~lc~sFpNL~sLDIS~Tn 184 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLP-SLRSLVISGRQFDN-----------------DDFSQLCASFPNLRSLDISGTN 184 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCc-ccceEEecCceecc-----------------hhHHHHhhccCccceeecCCCC
Confidence 677777776542 2 33333333343 77777777766542 0111222346778888888877
Q ss_pred cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch----hhh---cCCCCCCEEeCCCCc
Q psy17253 122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD----GAL---MGIHGLSRLDLSHNK 194 (227)
Q Consensus 122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~---~~~~~L~~l~l~~n~ 194 (227)
++.+. .+..+++|++|.+.+=.+.. ...+..+-.+++|+.||+|+......+ .++ ..++.|+.||.+++.
T Consensus 185 I~nl~-GIS~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 185 ISNLS-GISRLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCcH-HHhccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 77763 36677777776555433322 112222223444777777776543222 111 345677777777766
Q ss_pred ccc
Q psy17253 195 LRT 197 (227)
Q Consensus 195 l~~ 197 (227)
+..
T Consensus 262 i~~ 264 (699)
T KOG3665|consen 262 INE 264 (699)
T ss_pred hhH
Confidence 543
No 54
>KOG4658|consensus
Probab=97.52 E-value=6e-05 Score=68.53 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=46.7
Q ss_pred hcCCCcccEEEccCC-CcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC-cCchhhhcCCC
Q psy17253 106 VQGVTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI-ENLDGALMGIH 183 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~ 183 (227)
+..++.|.+|||++| .+..+|..++.+.+|++|++++..+..+|. .+ .++..|.+|++..+.. ..++.....+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~-~l---~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS-GL---GNLKKLIYLNLEVTGRLESIPGILLELQ 642 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch-HH---HHHHhhheeccccccccccccchhhhcc
Confidence 334566666666654 344566666666666666666666665543 22 2333366666665542 23334444466
Q ss_pred CCCEEeCCCCc
Q psy17253 184 GLSRLDLSHNK 194 (227)
Q Consensus 184 ~L~~l~l~~n~ 194 (227)
+|++|.+....
T Consensus 643 ~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 643 SLRVLRLPRSA 653 (889)
T ss_pred cccEEEeeccc
Confidence 66666655543
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.47 E-value=0.00065 Score=47.05 Aligned_cols=107 Identities=20% Similarity=0.418 Sum_probs=59.7
Q ss_pred CCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS 186 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~ 186 (227)
..+|+.+.+.. .++.+ ...|..+.+|+.+.+..+ +..+....+..+.. ++.+.+.. .+..++ ..+..+.+++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~---l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKS---LESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT----EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccc---cccccccc-ccccccccccccccccc
Confidence 45788888875 56666 456777778888888774 77776666666655 88888865 555565 4456678888
Q ss_pred EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.+.+..+ +..+....|... .++.+.+.+ .++.++.
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence 8888765 666766778877 788888765 5555543
No 56
>KOG3665|consensus
Probab=97.44 E-value=0.00018 Score=63.82 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=72.4
Q ss_pred CCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCC
Q psy17253 109 VTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHG 184 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~ 184 (227)
+|.|+.|.+++-.+.. +..-...+++|..||+++.+++.+ .+..++++|+.|.+.+=.+.... ..+..+++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-----HHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 7888888888765543 233345678888999998888765 23344445887777666665433 35678899
Q ss_pred CCEEeCCCCccccCC------ccccCCCCCCCEEEcCCCcCc
Q psy17253 185 LSRLDLSHNKLRTIS------PDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 185 L~~l~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~l~ 220 (227)
|++||+|..+-.... -+.-..++.|+.||.+++.+.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999999987554321 123344789999999987653
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.27 E-value=0.00024 Score=55.15 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=72.4
Q ss_pred CccEEEeCCCCCCCCChh----hhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccC
Q psy17253 44 DSISLKIAVSNLNDLPSK----TFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH 119 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 119 (227)
.++.+++|+|.|+.-... .+.... +|+..+++. +|.+..-..++..+..+-..+.+.+.|+.++||+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd--------~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSD--------AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhh--------hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 577788888877643222 223333 455544443 2222222334444444444555677788888887
Q ss_pred CCccc-cc----ccccCCCCCCEEEcCCCcCcccCCCCCC----------CCCCCCcccEEEcCCCCCcCchh-----hh
Q psy17253 120 NEIEN-LD----GALMGIHGLSRLDLSHNKLRTISPDDFI----------GLDSVTNIFELKLQHNEIENLDG-----AL 179 (227)
Q Consensus 120 n~l~~-l~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~~~~-----~~ 179 (227)
|.+.. .| .-+..-..|..|.+++|++..+...-++ ....=+.|+.+...+|++...+. .+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 76653 12 2334445677777777766443322221 01112346666666666654331 12
Q ss_pred cCCCCCCEEeCCCCccc
Q psy17253 180 MGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 180 ~~~~~L~~l~l~~n~l~ 196 (227)
..-..++.+.+.+|.|.
T Consensus 182 ~sh~~lk~vki~qNgIr 198 (388)
T COG5238 182 ESHENLKEVKIQQNGIR 198 (388)
T ss_pred HhhcCceeEEeeecCcC
Confidence 22234555555555543
No 58
>KOG2739|consensus
Probab=97.20 E-value=0.00014 Score=55.82 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=46.3
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCC--cCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCC
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN--KLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGL 185 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L 185 (227)
..++.+.+.+..++.+.. +..+++|+.|.++.| ++..-..-. ....++|+++++++|+++.+. ..+..+.+|
T Consensus 43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344445555554444332 445556666666666 222111111 112244666666666665321 223444555
Q ss_pred CEEeCCCCccccCC---ccccCCCCCCCEEE
Q psy17253 186 SRLDLSHNKLRTIS---PDDFIGLDSLKMLD 213 (227)
Q Consensus 186 ~~l~l~~n~l~~~~---~~~~~~~~~L~~L~ 213 (227)
..|++..|..+... ...|.-+++|+.||
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 66666666554432 12344444444443
No 59
>KOG2120|consensus
Probab=97.20 E-value=1.8e-05 Score=61.93 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.4
Q ss_pred CccEEEeCCCCCCC-CChhhhhcccccccEEEccCCCCCC
Q psy17253 44 DSISLKIAVSNLND-LPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 44 ~l~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
+++.||++...|+. --...++... +|+.|.+.++++..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD 224 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDD 224 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCc
Confidence 68889998888773 2233345555 78888888888764
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.11 E-value=0.00021 Score=55.49 Aligned_cols=166 Identities=21% Similarity=0.229 Sum_probs=101.1
Q ss_pred CccEEEeCCCCCCC-CChh---hhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchh--hhhcCCCcccEEE
Q psy17253 44 DSISLKIAVSNLND-LPSK---TFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLK--NQVQGVTNIFELK 116 (227)
Q Consensus 44 ~l~~L~l~~~~l~~-~~~~---~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~l~~L~~L~ 116 (227)
+++.+++|+|.++. +|.. .++... .|.+|.+++|.+.. ..... ...+.++. +-...-+.|++++
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~NnGlGp~aG~ri--------gkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLNNNGLGPIAGGRI--------GKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCC-CceeEEeecCCCCccchhHH--------HHHHHHHHHHhhhccCCCceEEE
Confidence 78999999998873 3322 233333 68899999998875 22221 11111111 1122356799999
Q ss_pred ccCCCccccc-----ccccCCCCCCEEEcCCCcCcccCCC--CCCCCCCCCcccEEEcCCCCCcCch-----hhhcCCCC
Q psy17253 117 LQHNEIENLD-----GALMGIHGLSRLDLSHNKLRTISPD--DFIGLDSVTNIFELKLQHNEIENLD-----GALMGIHG 184 (227)
Q Consensus 117 l~~n~l~~l~-----~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~~-----~~~~~~~~ 184 (227)
...|++..-+ ..+....+|+.+.+..|+|...... .+.++..+.+|+.|++++|.++... ..+..++.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 9999887643 3344456889999999988643111 2223334456999999999987432 34577788
Q ss_pred CCEEeCCCCccccCCccc----cC--CCCCCCEEEcCCCc
Q psy17253 185 LSRLDLSHNKLRTISPDD----FI--GLDSLKMLDISHNL 218 (227)
Q Consensus 185 L~~l~l~~n~l~~~~~~~----~~--~~~~L~~L~l~~n~ 218 (227)
|+.|.+.+|-++...... |. ..++|..|-...|.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 899999988776543211 11 23455555555553
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.10 E-value=0.0036 Score=51.97 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=21.2
Q ss_pred CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCC
Q psy17253 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217 (227)
Q Consensus 183 ~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 217 (227)
.+|+.|++++|..... |..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~L-P~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIIL-PEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccC-ccccc--ccCcEEEeccc
Confidence 4688888888775543 32222 46888888776
No 62
>KOG2982|consensus
Probab=97.01 E-value=0.0007 Score=53.28 Aligned_cols=167 Identities=18% Similarity=0.235 Sum_probs=95.6
Q ss_pred CccEEEeCCCCCCCCC--hhhhhcccccccEEEccCCCCCC-CCCC-CCCCC-----CCCCcchhhchhhhhcCCCcccE
Q psy17253 44 DSISLKIAVSNLNDLP--SKTFQELGLQIVNLKLTKNNLRP-DGAA-LRPID-----VCAPPSTLDNLKNQVQGVTNIFE 114 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~n~~~~-~~~~-~~~~~-----l~~~~~~~~~~~~~~~~l~~L~~ 114 (227)
+++.+|+.+|.|+.+. ...+++++ .++.|+++.|++.. .... ..... +...-.++....+....++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 7899999999998653 33567787 99999999999886 2111 11111 11111133344444455667777
Q ss_pred EEccCCCccc----------ccccc--------------------cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccE
Q psy17253 115 LKLQHNEIEN----------LDGAL--------------------MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164 (227)
Q Consensus 115 L~l~~n~l~~----------l~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 164 (227)
|+++.|++.. +...+ .-++++..+-+..+.+...... .+...++++--
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~ 228 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLSC 228 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcchh
Confidence 7777664321 11000 1234555555556655443211 12233445666
Q ss_pred EEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc------cccCCCCCCCEEE
Q psy17253 165 LKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP------DDFIGLDSLKMLD 213 (227)
Q Consensus 165 l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~------~~~~~~~~L~~L~ 213 (227)
|+++.++|..+. +.+.+++.+.-+.++++.+.+... -.++.+++++.|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 778888887664 456777778888888877755321 1345566666554
No 63
>KOG2123|consensus
Probab=96.99 E-value=3.2e-05 Score=60.05 Aligned_cols=99 Identities=27% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCC
Q psy17253 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLS 186 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~ 186 (227)
+.+++.|+.-++.++++.- ...|+.|++|.|+-|+|+.+.+ +..++ .|++|+|..|.|..+. .++.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCt---rLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCT---RLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHH---HHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 5677888888888887644 3578899999999999987753 34444 4999999999999887 4678999999
Q ss_pred EEeCCCCccccCCc-----cccCCCCCCCEEE
Q psy17253 187 RLDLSHNKLRTISP-----DDFIGLDSLKMLD 213 (227)
Q Consensus 187 ~l~l~~n~l~~~~~-----~~~~~~~~L~~L~ 213 (227)
.|.+..|.=.+..+ ..+.-+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999886543322 2344566666665
No 64
>KOG2739|consensus
Probab=96.60 E-value=0.0014 Score=50.39 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc---CchhhhcCCCCCCEEeCCCCccccCC-ccccCCC
Q psy17253 131 GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGL 206 (227)
Q Consensus 131 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~---~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~ 206 (227)
.+..|+.+++.+..++.. ..++.+++|+.|.++.|.+. .++.....+++|+++++++|++..+. -..+..+
T Consensus 41 ~~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccchhhhhhhccceeec-----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 344566666666665543 34566677999999999543 23333455699999999999987642 1235666
Q ss_pred CCCCEEEcCCCcCcc
Q psy17253 207 DSLKMLDISHNLLTT 221 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~ 221 (227)
.+|..|++..|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 778899999887654
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.0017 Score=30.17 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=13.0
Q ss_pred cccEEEccCCCccccccccc
Q psy17253 111 NIFELKLQHNEIENLDGALM 130 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~ 130 (227)
+|++|++++|+++.+|.+|.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 36677777777776666554
No 66
>KOG2120|consensus
Probab=96.34 E-value=0.00049 Score=54.15 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=78.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+++.|.+.++.+.+--...++... +|+.|+++.+. +++ ....-++..++.|..|+++.|.+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~-----------------n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTE-----------------NALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred hhhhccccccccCcHHHHHHhccc-cceeeccccccccch-----------------hHHHHHHHhhhhHhhcCchHhhc
Confidence 688889999988876556666666 88899988665 221 01111222345666777776654
Q ss_pred cc-c-cccccC-CCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCC-CcC-chhhhcCCCCCCEEeCCCCccc
Q psy17253 123 EN-L-DGALMG-IHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNE-IEN-LDGALMGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 123 ~~-l-~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~-~~~-~~~~~~~~~~L~~l~l~~n~l~ 196 (227)
.. . ...+.- -++|..|++++..-.. ....++- ...+++|.+|||+++. ++. .-..+..++.|+++.++.|..
T Consensus 273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl-~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~- 350 (419)
T KOG2120|consen 273 FTEKVTVAVAHISETLTQLNLSGYRRNL-QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD- 350 (419)
T ss_pred cchhhhHHHhhhchhhhhhhhhhhHhhh-hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-
Confidence 32 1 111111 1345556665542100 0001111 1223446667776664 332 112345556666666666643
Q ss_pred cCCcc---ccCCCCCCCEEEcCCC
Q psy17253 197 TISPD---DFIGLDSLKMLDISHN 217 (227)
Q Consensus 197 ~~~~~---~~~~~~~L~~L~l~~n 217 (227)
++|. .+...+.|..||+.+.
T Consensus 351 -i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 351 -IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -CChHHeeeeccCcceEEEEeccc
Confidence 2222 3455566666666553
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.18 E-value=0.0033 Score=27.19 Aligned_cols=16 Identities=50% Similarity=0.729 Sum_probs=9.1
Q ss_pred CCCEEEcCCCcCcccC
Q psy17253 208 SLKMLDISHNLLTTLE 223 (227)
Q Consensus 208 ~L~~L~l~~n~l~~lp 223 (227)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5777788888777776
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.72 E-value=0.0055 Score=28.42 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=8.0
Q ss_pred ccEEEcCCCCCcCchh
Q psy17253 162 IFELKLQHNEIENLDG 177 (227)
Q Consensus 162 L~~l~l~~n~~~~~~~ 177 (227)
|+.|++++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4455555555554443
No 69
>KOG2123|consensus
Probab=95.28 E-value=0.00045 Score=53.81 Aligned_cols=81 Identities=23% Similarity=0.242 Sum_probs=65.1
Q ss_pred CCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCC
Q psy17253 132 IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLK 210 (227)
Q Consensus 132 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~ 210 (227)
+.+.+.|+..++.++.+. -+.+++.|+.|.|+.|.|+.+.. +..+++|+.|.|+.|.|.++. ...+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIs-----ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-----ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHH-----HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 456677888888887663 24556669999999999988854 678899999999999998875 34678899999
Q ss_pred EEEcCCCc
Q psy17253 211 MLDISHNL 218 (227)
Q Consensus 211 ~L~l~~n~ 218 (227)
.|-|..|+
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 99888885
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.27 E-value=0.013 Score=28.26 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=14.3
Q ss_pred CCCCEEEcCCCcCcccCCC
Q psy17253 207 DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp~~ 225 (227)
++|+.|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677788888888888764
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.27 E-value=0.013 Score=28.26 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=14.3
Q ss_pred CCCCEEEcCCCcCcccCCC
Q psy17253 207 DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp~~ 225 (227)
++|+.|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677788888888888764
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.62 E-value=0.062 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.6
Q ss_pred CccEEEeCCCCCCCCChhhhh
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQ 64 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~ 64 (227)
+++.|++++|.|..+|..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCEEECCCCcCCcCCHHHcc
Confidence 478899999999999888775
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.62 E-value=0.062 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.6
Q ss_pred CccEEEeCCCCCCCCChhhhh
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQ 64 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~ 64 (227)
+++.|++++|.|..+|..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCEEECCCCcCCcCCHHHcc
Confidence 478899999999999888775
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.06 E-value=0.11 Score=25.06 Aligned_cols=18 Identities=56% Similarity=0.680 Sum_probs=14.9
Q ss_pred CCCCEEEcCCCcCcccCC
Q psy17253 207 DSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp~ 224 (227)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357888999999999886
No 75
>KOG0473|consensus
Probab=91.06 E-value=0.0046 Score=47.15 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=53.0
Q ss_pred ccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCC
Q psy17253 129 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208 (227)
Q Consensus 129 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~ 208 (227)
+......+.||++.|++..... .++ .++.+..++++-|++..+|..++....+..+++..|.++.. |..++..++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~-n~s---~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGK-NFS---ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPH 112 (326)
T ss_pred hhccceeeeehhhhhHHHhhcc-chH---HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-CccccccCC
Confidence 3344455666777766544332 122 22336677777777777776665555566667777777665 566677777
Q ss_pred CCEEEcCCCcC
Q psy17253 209 LKMLDISHNLL 219 (227)
Q Consensus 209 L~~L~l~~n~l 219 (227)
++.+++.+|.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77777777664
No 76
>KOG3864|consensus
Probab=89.13 E-value=0.09 Score=39.31 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=25.2
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN 79 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 79 (227)
.++.+|-+++.|..+..+.+.+++ .++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~-~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLR-SIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccc-hhhhheecccc
Confidence 577777777777777777777776 77777666665
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.07 E-value=0.86 Score=21.98 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=11.0
Q ss_pred CCCCEEEcCCCcCcccC
Q psy17253 207 DSLKMLDISHNLLTTLE 223 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp 223 (227)
.+|+.|+++.|.++.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45667777777766654
No 78
>KOG4308|consensus
Probab=84.91 E-value=0.011 Score=50.46 Aligned_cols=175 Identities=25% Similarity=0.288 Sum_probs=92.7
Q ss_pred ccEEEeCCCCCCCCCh----hhhhcccccccEEEccCCCCCC-CCCCC----CC-------CCCCCCc---chhhchhhh
Q psy17253 45 SISLKIAVSNLNDLPS----KTFQELGLQIVNLKLTKNNLRP-DGAAL----RP-------IDVCAPP---STLDNLKNQ 105 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~~~~-~~~~~----~~-------~~l~~~~---~~~~~~~~~ 105 (227)
+..|++.+|.+..-.. .++.... .|..|+++.|.+.. ..... .. ..+.... .....+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 7778888888875543 3455555 78888999888874 11111 00 0010000 011222233
Q ss_pred hcCCCcccEEEccCCCccc-----cccccc----CCCCCCEEEcCCCcCcccCCCCCC-CCCCCCc-ccEEEcCCCCCcC
Q psy17253 106 VQGVTNIFELKLQHNEIEN-----LDGALM----GIHGLSRLDLSHNKLRTISPDDFI-GLDSVTN-IFELKLQHNEIEN 174 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~-L~~l~l~~n~~~~ 174 (227)
+.....++.++++.|.+.. ++..+. ...++++|.+.++.++......+. .+...+. +..+++..|++..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 3334566777777776632 122222 355677777777766533221111 1122222 4557777777653
Q ss_pred c-----hhhhcCC-CCCCEEeCCCCccccCC----ccccCCCCCCCEEEcCCCcCc
Q psy17253 175 L-----DGALMGI-HGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 175 ~-----~~~~~~~-~~L~~l~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~ 220 (227)
. .+.+... ..+++++++.|++.... ...+...+.++.+.+..|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 1222333 45677888888776543 234445567777777777654
No 79
>KOG3864|consensus
Probab=84.82 E-value=0.11 Score=38.91 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=42.2
Q ss_pred cccEEEccCCCcccc-cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCC-CcCch-hhhcCCCCCC
Q psy17253 111 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNE-IENLD-GALMGIHGLS 186 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L~ 186 (227)
.++.++-+++.|... -..+..++.++.|.+..+. +..+-...++. -.++|+.|++++|. |++-. ..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 366666666666543 2345566666666666553 22211111111 12347777777663 66543 4455666666
Q ss_pred EEeCCC
Q psy17253 187 RLDLSH 192 (227)
Q Consensus 187 ~l~l~~ 192 (227)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 666554
No 80
>KOG3763|consensus
Probab=84.00 E-value=0.68 Score=39.87 Aligned_cols=65 Identities=29% Similarity=0.332 Sum_probs=39.3
Q ss_pred CCCcccEEEccCCCcccccc---cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc
Q psy17253 108 GVTNIFELKLQHNEIENLDG---ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 173 (227)
..+.+..+.|++|++..+.. --...++|..|+|++|.........+..++. ..|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 56788888888888776532 2234477888888888321111112222322 22788888888764
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.55 E-value=0.92 Score=21.08 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=6.9
Q ss_pred CCCCEEEcCCCcCc
Q psy17253 207 DSLKMLDISHNLLT 220 (227)
Q Consensus 207 ~~L~~L~l~~n~l~ 220 (227)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666666554
No 82
>KOG3763|consensus
Probab=79.55 E-value=1.2 Score=38.50 Aligned_cols=61 Identities=28% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCCCEEEcCCCcCcccCCCCCCCC-CCCCcccEEEcCCC--CCcCchhhh--cCCCCCCEEeCCCCccc
Q psy17253 133 HGLSRLDLSHNKLRTISPDDFIGL-DSVTNIFELKLQHN--EIENLDGAL--MGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 133 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~l~l~~n--~~~~~~~~~--~~~~~L~~l~l~~n~l~ 196 (227)
+.+..++|++|++..+.. +..+ ...++|..|+|++| .+...++ + -....|+.|.+.+|++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccc
Confidence 445555666666554431 1111 12234666666666 2221111 1 12233556666666653
No 83
>KOG1947|consensus
Probab=73.38 E-value=1.4 Score=37.50 Aligned_cols=110 Identities=23% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCcccEEEccCC-Cccc--ccccccCCCCCCEEEcCCC--cCcccCCCCCCCCCCCCcccEEEcCCCC-CcCch-hhh-c
Q psy17253 109 VTNIFELKLQHN-EIEN--LDGALMGIHGLSRLDLSHN--KLRTISPDDFIGLDSVTNIFELKLQHNE-IENLD-GAL-M 180 (227)
Q Consensus 109 l~~L~~L~l~~n-~l~~--l~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~-~~~-~ 180 (227)
.+.++.+.+..+ .+.. +.......+.|+.|+++++ .+.............+..|+.+++++.. ++... ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666666554 3332 2333445566777776652 1111110000111122346666666665 44332 222 3
Q ss_pred CCCCCCEEeCCCCc-cccCC-ccccCCCCCCCEEEcCCCc
Q psy17253 181 GIHGLSRLDLSHNK-LRTIS-PDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 181 ~~~~L~~l~l~~n~-l~~~~-~~~~~~~~~L~~L~l~~n~ 218 (227)
.+++|+.|.+..+. ++... ......++.|+.|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 35666776655554 44322 1223445667777766543
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.99 E-value=4.1 Score=19.81 Aligned_cols=13 Identities=54% Similarity=0.677 Sum_probs=7.7
Q ss_pred CCCEEEcCCCcCc
Q psy17253 208 SLKMLDISHNLLT 220 (227)
Q Consensus 208 ~L~~L~l~~n~l~ 220 (227)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666553
No 85
>KOG0473|consensus
Probab=69.96 E-value=0.09 Score=40.34 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEE
Q psy17253 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL 188 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l 188 (227)
+...+.||++.|++-.+-..|.-+..+..++++.|.+...+.+ + .....+..+++..|.....|..++..+.++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~---~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-A---KQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-H---HHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 3567777777777666655566566667777777776655432 2 22222555666666666677666666777777
Q ss_pred eCCCCccc
Q psy17253 189 DLSHNKLR 196 (227)
Q Consensus 189 ~l~~n~l~ 196 (227)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77776653
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.12 E-value=8.9 Score=39.85 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=29.7
Q ss_pred EeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253 49 KIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 49 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
||++|.|..++...|..+. +|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~-sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLC-NLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCC-CceEEEeeCCcccc
Confidence 5789999999999999997 99999999999764
No 87
>KOG4341|consensus
Probab=55.06 E-value=6.3 Score=33.14 Aligned_cols=157 Identities=18% Similarity=0.085 Sum_probs=71.6
Q ss_pred CccEEEeCCCC-CCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC-
Q psy17253 44 DSISLKIAVSN-LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE- 121 (227)
Q Consensus 44 ~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~- 121 (227)
.+..+++..|+ +++.....+...-..++.|+.+++.... -..+..+..+..+|+.|.++.++
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~----------------d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT----------------DEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc----------------hHHHHHHhcCCCceEEEeccccch
Confidence 35666655553 3333322222222256777766655321 01122222345677777777664
Q ss_pred cccc--cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC-CcCc-----hhhhcCCCCCCEEeCCCC
Q psy17253 122 IENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE-IENL-----DGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 122 l~~l--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~-----~~~~~~~~~L~~l~l~~n 193 (227)
++.. ..--.+.+.|+.+++.+....... ...+-..+++.|+.+.++.+. ++.- ...-.....+..+.+.++
T Consensus 333 fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 333 FSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 2221 111123456677776665533221 011112334456666666543 2211 111234455666666666
Q ss_pred cc-ccCCccccCCCCCCCEEEcCCC
Q psy17253 194 KL-RTISPDDFIGLDSLKMLDISHN 217 (227)
Q Consensus 194 ~l-~~~~~~~~~~~~~L~~L~l~~n 217 (227)
+. .+...+.+..+++|+.+++-..
T Consensus 412 p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 412 PLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CCchHHHHHHHhhCcccceeeeech
Confidence 53 2222344455566666655443
No 88
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=37.33 E-value=36 Score=16.46 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=9.3
Q ss_pred ccccccCCCCCceEEEecC
Q psy17253 8 CTCKCRTSPISPIVVECEK 26 (227)
Q Consensus 8 ~~c~~~~~~~~~~~~~c~~ 26 (227)
-.|.|.. .+|.|+.
T Consensus 4 ~~C~C~~-----~~V~C~~ 17 (28)
T PF01462_consen 4 RPCTCSG-----LTVDCSG 17 (28)
T ss_dssp TTSEEET-----TEEEETT
T ss_pred CCCEecC-----CEeECCC
Confidence 3466662 2899987
No 89
>KOG4341|consensus
Probab=37.00 E-value=25 Score=29.82 Aligned_cols=36 Identities=11% Similarity=-0.002 Sum_probs=24.4
Q ss_pred CccEEEeCCCC-CCCCChhhhhcccccccEEEccCCC
Q psy17253 44 DSISLKIAVSN-LNDLPSKTFQELGLQIVNLKLTKNN 79 (227)
Q Consensus 44 ~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~n~ 79 (227)
.++.|+.+++. +++.+-.++..-..+|+.|.++.++
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ 331 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence 57778887664 5555555565555578888887776
No 90
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=33.10 E-value=23 Score=14.21 Aligned_cols=10 Identities=30% Similarity=1.312 Sum_probs=5.6
Q ss_pred CCCCCCccccc
Q psy17253 2 RREINPCTCKC 12 (227)
Q Consensus 2 ~~~~~~~~c~~ 12 (227)
|.+ ..|.|.|
T Consensus 4 wn~-~tC~C~C 13 (14)
T PF03128_consen 4 WND-DTCQCEC 13 (14)
T ss_pred ecC-CCcCccC
Confidence 554 5566655
No 91
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=28.77 E-value=79 Score=15.78 Aligned_cols=15 Identities=33% Similarity=1.041 Sum_probs=9.3
Q ss_pred CccccccCCCCCceEEEecC
Q psy17253 7 PCTCKCRTSPISPIVVECEK 26 (227)
Q Consensus 7 ~~~c~~~~~~~~~~~~~c~~ 26 (227)
+..|.|.. ..|.|..
T Consensus 3 P~~C~C~~-----~~V~C~~ 17 (33)
T smart00013 3 PAPCNCSG-----TAVDCSG 17 (33)
T ss_pred CCCCEECC-----CEeEeCC
Confidence 34466652 3799977
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.87 E-value=67 Score=14.85 Aligned_cols=11 Identities=45% Similarity=0.462 Sum_probs=6.7
Q ss_pred CCCCEEeCCCC
Q psy17253 183 HGLSRLDLSHN 193 (227)
Q Consensus 183 ~~L~~l~l~~n 193 (227)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666665
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.97 E-value=51 Score=34.85 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=25.1
Q ss_pred EccCCCccccc-ccccCCCCCCEEEcCCCcC
Q psy17253 116 KLQHNEIENLD-GALMGIHGLSRLDLSHNKL 145 (227)
Q Consensus 116 ~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l 145 (227)
+|++|+|+.|+ +.|..+.+|+.|+|.+|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 57899999884 5777889999999999875
Done!