Query psy17253
Match_columns 227
No_of_seqs 138 out of 1679
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 17:16:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.4E-28 163.7 20.0 197 6-220 8-218 (270)
2 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-23 1.1E-27 163.5 18.9 202 6-224 2-218 (285)
3 3m19_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 158.5 19.3 174 21-222 18-194 (251)
4 1p9a_G Platelet glycoprotein I 99.9 8.5E-23 2.9E-27 161.6 18.3 176 20-225 13-190 (290)
5 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 159.4 13.1 205 6-225 4-223 (239)
6 2z66_A Variable lymphocyte rec 99.9 7.5E-23 2.6E-27 162.9 13.2 204 7-224 2-240 (306)
7 1xku_A Decorin; proteoglycan, 99.9 1.6E-21 5.5E-26 156.8 19.9 208 2-224 21-280 (330)
8 3zyi_A Leucine-rich repeat-con 99.9 1.1E-21 3.7E-26 164.4 18.5 200 6-225 46-284 (452)
9 4g8a_A TOLL-like receptor 4; l 99.9 3.2E-22 1.1E-26 173.3 15.8 178 21-226 35-220 (635)
10 2z62_A TOLL-like receptor 4, v 99.9 5.4E-22 1.9E-26 155.7 15.4 195 21-225 11-218 (276)
11 3zyj_A Leucine-rich repeat-con 99.9 1E-21 3.4E-26 164.0 17.8 200 6-225 35-273 (440)
12 2o6q_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 150.0 18.4 159 29-197 45-219 (270)
13 2xot_A Amphoterin-induced prot 99.9 7E-22 2.4E-26 161.0 13.3 182 6-220 12-202 (361)
14 3t6q_A CD180 antigen; protein- 99.9 2.2E-21 7.5E-26 167.8 15.2 191 5-226 3-198 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 3.5E-21 1.2E-25 162.2 15.6 200 6-223 3-217 (477)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-21 1.3E-25 166.3 15.1 178 21-226 15-200 (606)
17 4ay9_X Follicle-stimulating ho 99.9 2.4E-21 8E-26 157.2 12.8 203 10-225 7-220 (350)
18 2o6s_A Variable lymphocyte rec 99.9 5.5E-21 1.9E-25 143.9 14.0 174 7-220 2-178 (208)
19 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-20 4.1E-25 151.9 16.6 204 6-224 27-281 (332)
20 2v9t_B SLIT homolog 2 protein 99.9 1.4E-20 4.7E-25 143.1 15.3 159 5-196 4-165 (220)
21 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-20 6.4E-25 147.6 16.4 183 29-221 40-239 (285)
22 3zyj_A Leucine-rich repeat-con 99.9 1.6E-20 5.4E-25 156.7 16.7 187 29-220 72-292 (440)
23 2z62_A TOLL-like receptor 4, v 99.9 8.4E-21 2.9E-25 148.9 13.3 186 29-221 36-238 (276)
24 3zyi_A Leucine-rich repeat-con 99.8 5.2E-20 1.8E-24 154.1 17.0 187 29-220 83-303 (452)
25 3m19_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 140.9 17.1 156 44-225 15-173 (251)
26 2z80_A TOLL-like receptor 2, v 99.8 1E-20 3.5E-25 153.5 11.5 179 35-223 44-238 (353)
27 2z63_A TOLL-like receptor 4, v 99.8 3.8E-20 1.3E-24 158.7 15.5 177 21-225 11-195 (570)
28 3e6j_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 136.9 17.5 147 21-196 23-172 (229)
29 3rfs_A Internalin B, repeat mo 99.8 3.3E-19 1.1E-23 139.6 18.6 154 44-222 64-220 (272)
30 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.8E-24 146.2 14.4 190 31-224 64-313 (332)
31 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-19 8.2E-24 136.2 15.4 158 6-196 5-166 (220)
32 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-19 5E-24 158.4 15.7 176 21-224 8-188 (680)
33 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-20 1.8E-24 147.1 11.4 181 36-224 67-286 (313)
34 3v47_A TOLL-like receptor 5B a 99.8 2.5E-19 8.5E-24 149.8 15.9 184 6-223 4-196 (455)
35 1p9a_G Platelet glycoprotein I 99.8 4.4E-19 1.5E-23 140.2 16.1 165 29-220 39-208 (290)
36 1xku_A Decorin; proteoglycan, 99.8 1.1E-18 3.9E-23 140.1 18.1 189 29-221 60-307 (330)
37 1ogq_A PGIP-2, polygalacturona 99.8 6.2E-20 2.1E-24 146.6 10.6 175 43-221 50-235 (313)
38 3rfs_A Internalin B, repeat mo 99.8 1.2E-18 4E-23 136.5 17.5 156 44-225 42-199 (272)
39 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-19 1.1E-23 135.6 13.6 150 45-220 13-166 (220)
40 2z66_A Variable lymphocyte rec 99.8 2.4E-19 8.4E-24 142.5 12.7 115 105-222 145-263 (306)
41 4fcg_A Uncharacterized protein 99.8 7.8E-19 2.7E-23 141.2 15.5 174 44-223 105-294 (328)
42 3o6n_A APL1; leucine-rich repe 99.8 6.9E-19 2.4E-23 144.5 15.5 64 160-224 248-312 (390)
43 3o6n_A APL1; leucine-rich repe 99.8 1.8E-18 6.1E-23 142.1 16.9 174 44-225 70-290 (390)
44 3oja_B Anopheles plasmodium-re 99.8 2.5E-18 8.5E-23 148.7 18.3 99 44-149 76-187 (597)
45 2id5_A Lingo-1, leucine rich r 99.8 9.7E-19 3.3E-23 147.2 15.0 193 28-224 39-241 (477)
46 3v47_A TOLL-like receptor 5B a 99.8 2.8E-18 9.6E-23 143.4 17.3 113 110-225 275-389 (455)
47 3oja_B Anopheles plasmodium-re 99.8 1.2E-18 4.2E-23 150.6 15.5 57 30-87 84-143 (597)
48 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.1E-23 140.8 15.5 155 45-224 20-180 (361)
49 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-18 7.9E-23 150.8 17.3 192 32-224 392-601 (680)
50 3rgz_A Protein brassinosteroid 99.8 1.4E-18 4.6E-23 154.4 15.0 86 133-221 632-718 (768)
51 3rgz_A Protein brassinosteroid 99.8 2.8E-18 9.6E-23 152.3 16.7 172 44-223 443-696 (768)
52 2o6s_A Variable lymphocyte rec 99.8 8.7E-18 3E-22 126.4 17.0 153 45-223 9-164 (208)
53 2z80_A TOLL-like receptor 2, v 99.8 5.9E-19 2E-23 143.1 11.2 139 29-176 60-214 (353)
54 3t6q_A CD180 antigen; protein- 99.8 4.1E-18 1.4E-22 147.3 16.0 59 28-87 40-101 (606)
55 4fcg_A Uncharacterized protein 99.8 2.9E-18 1E-22 137.8 13.9 169 43-224 81-271 (328)
56 1wwl_A Monocyte differentiatio 99.8 5.6E-18 1.9E-22 135.2 15.2 170 44-222 122-311 (312)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-17 6.7E-22 142.0 18.6 111 21-146 35-159 (562)
58 1h6u_A Internalin H; cell adhe 99.8 1.2E-17 4.2E-22 133.1 15.7 161 44-224 64-234 (308)
59 4g8a_A TOLL-like receptor 4; l 99.8 4.7E-18 1.6E-22 147.1 14.0 154 46-225 34-191 (635)
60 3oja_A Leucine-rich immune mol 99.8 8.4E-19 2.9E-23 148.1 9.1 38 44-82 35-72 (487)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-18 3.7E-23 139.6 9.3 170 44-220 35-250 (317)
62 4ezg_A Putative uncharacterize 99.8 6.1E-18 2.1E-22 126.2 12.7 149 44-221 45-195 (197)
63 2xwt_C Thyrotropin receptor; s 99.8 3.7E-18 1.3E-22 131.1 11.7 172 31-218 41-237 (239)
64 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-18 8.8E-23 146.9 11.0 177 36-222 19-211 (549)
65 4eco_A Uncharacterized protein 99.8 2.5E-18 8.7E-23 149.6 11.1 176 43-223 81-347 (636)
66 4glp_A Monocyte differentiatio 99.8 7E-18 2.4E-22 134.5 12.7 173 44-221 118-308 (310)
67 4ecn_A Leucine-rich repeat pro 99.8 6.2E-18 2.1E-22 151.0 13.5 184 31-222 435-659 (876)
68 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-17 1.2E-21 139.1 16.7 170 44-221 303-482 (520)
69 1wwl_A Monocyte differentiatio 99.7 7E-18 2.4E-22 134.6 11.5 166 44-225 96-271 (312)
70 4eco_A Uncharacterized protein 99.7 4.2E-17 1.4E-21 142.0 17.2 161 44-224 434-604 (636)
71 1h6u_A Internalin H; cell adhe 99.7 4.3E-17 1.5E-21 129.9 15.7 160 44-224 42-212 (308)
72 1h6t_A Internalin B; cell adhe 99.7 4.2E-17 1.4E-21 128.9 15.4 160 44-224 47-217 (291)
73 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.9E-22 128.3 13.8 147 44-224 42-189 (263)
74 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-17 4.3E-22 149.5 13.2 171 21-220 8-187 (844)
75 2v9t_B SLIT homolog 2 protein 99.7 7E-17 2.4E-21 122.6 15.0 148 45-220 13-165 (220)
76 2wfh_A SLIT homolog 2 protein 99.7 7.6E-17 2.6E-21 120.0 14.1 108 110-220 31-139 (193)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.7E-17 3E-21 138.0 16.3 155 44-220 354-510 (562)
78 3vq2_A TLR4, TOLL-like recepto 99.7 7.3E-17 2.5E-21 139.5 15.9 155 45-225 13-171 (606)
79 1h6t_A Internalin B; cell adhe 99.7 5.3E-17 1.8E-21 128.3 13.7 139 44-200 69-217 (291)
80 4ecn_A Leucine-rich repeat pro 99.7 1.1E-16 3.9E-21 142.9 17.3 116 108-225 695-824 (876)
81 2z81_A CD282 antigen, TOLL-lik 99.7 2.7E-18 9.2E-23 146.7 6.6 185 28-221 33-237 (549)
82 4fmz_A Internalin; leucine ric 99.7 1.8E-16 6.2E-21 128.0 16.2 163 44-224 156-328 (347)
83 3cvr_A Invasion plasmid antige 99.7 1.6E-16 5.5E-21 136.0 16.3 156 37-222 74-245 (571)
84 2wfh_A SLIT homolog 2 protein 99.7 1.8E-16 6E-21 118.0 14.3 134 6-173 4-139 (193)
85 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.6E-21 118.5 13.5 109 110-221 29-140 (192)
86 3o53_A Protein LRIM1, AGAP0063 99.7 6.8E-17 2.3E-21 129.2 12.3 104 108-216 167-271 (317)
87 4glp_A Monocyte differentiatio 99.7 5.9E-17 2E-21 129.1 11.7 116 108-225 143-269 (310)
88 3g06_A SSPH2 (leucine-rich rep 99.7 2.8E-16 9.4E-21 136.0 16.7 42 36-82 54-95 (622)
89 2z63_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 139.9 11.0 175 44-222 348-533 (570)
90 3oja_A Leucine-rich immune mol 99.7 9E-17 3.1E-21 135.7 12.8 182 30-220 43-250 (487)
91 1m9s_A Internalin B; cell inva 99.7 3.9E-16 1.3E-20 134.8 16.7 149 44-224 66-214 (605)
92 1o6v_A Internalin A; bacterial 99.7 6.1E-16 2.1E-20 129.9 16.7 162 44-225 222-393 (466)
93 4fmz_A Internalin; leucine ric 99.7 6.9E-16 2.3E-20 124.6 16.0 159 44-221 178-347 (347)
94 3e6j_A Variable lymphocyte rec 99.7 6.2E-16 2.1E-20 118.0 14.8 150 44-221 20-173 (229)
95 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-16 5.1E-21 135.2 12.3 143 21-195 4-150 (520)
96 3j0a_A TOLL-like receptor 5; m 99.7 8.5E-17 2.9E-21 144.2 11.3 185 32-225 277-522 (844)
97 2ell_A Acidic leucine-rich nuc 99.7 7.7E-17 2.6E-21 117.1 8.9 136 69-227 25-167 (168)
98 3bz5_A Internalin-J, INLJ; leu 99.7 2.2E-15 7.5E-20 126.3 18.9 157 44-224 65-250 (457)
99 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.2E-21 136.1 12.5 148 44-224 44-192 (605)
100 2o6r_A Variable lymphocyte rec 99.7 1.2E-15 3.9E-20 111.8 14.3 134 8-174 3-138 (177)
101 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.5E-21 124.3 9.6 158 32-223 8-166 (263)
102 1w8a_A SLIT protein; signaling 99.7 8.5E-16 2.9E-20 114.1 13.6 135 6-173 2-139 (192)
103 3cvr_A Invasion plasmid antige 99.7 8.4E-16 2.9E-20 131.6 15.3 150 44-225 60-225 (571)
104 2o6r_A Variable lymphocyte rec 99.7 2.2E-15 7.5E-20 110.4 14.8 110 110-222 28-139 (177)
105 3bz5_A Internalin-J, INLJ; leu 99.7 1.1E-14 3.8E-19 122.0 19.0 161 44-223 86-270 (457)
106 1o6v_A Internalin A; bacterial 99.7 6E-15 2E-19 123.9 17.3 167 44-224 178-370 (466)
107 3g06_A SSPH2 (leucine-rich rep 99.6 3.8E-15 1.3E-19 128.9 15.5 35 43-82 81-115 (622)
108 1jl5_A Outer protein YOPM; leu 99.6 8.5E-15 2.9E-19 122.6 16.1 55 162-223 239-293 (454)
109 1jl5_A Outer protein YOPM; leu 99.6 1.5E-14 5E-19 121.1 17.4 155 43-223 91-253 (454)
110 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 109.2 10.0 139 36-199 17-163 (168)
111 4ezg_A Putative uncharacterize 99.6 1.2E-14 4.2E-19 108.2 12.1 143 51-224 31-176 (197)
112 1dce_A Protein (RAB geranylger 99.6 1.3E-17 4.6E-22 143.0 -5.0 174 44-225 350-551 (567)
113 1a9n_A U2A', U2A'; complex (nu 99.6 2E-15 6.8E-20 110.5 6.9 135 63-221 15-154 (176)
114 2r9u_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 105.2 12.0 108 112-224 14-122 (174)
115 2je0_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 105.8 8.2 103 109-215 41-148 (149)
116 3goz_A Leucine-rich repeat-con 99.6 1.3E-15 4.4E-20 123.9 6.3 179 44-224 23-242 (362)
117 3g39_A Variable lymphocyte rec 99.6 1.9E-14 6.6E-19 104.7 11.9 108 111-223 10-118 (170)
118 2je0_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 103.3 10.2 111 109-224 16-130 (149)
119 4b8c_D Glucose-repressible alc 99.6 2.3E-15 7.7E-20 132.8 7.5 158 44-223 174-332 (727)
120 4b8c_D Glucose-repressible alc 99.6 3.7E-16 1.3E-20 137.8 1.0 119 58-201 215-334 (727)
121 4ay9_X Follicle-stimulating ho 99.5 3.7E-14 1.3E-18 114.8 11.3 153 46-225 12-196 (350)
122 3sb4_A Hypothetical leucine ri 99.5 3.4E-14 1.2E-18 114.0 10.6 44 44-89 102-146 (329)
123 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.2E-20 124.0 3.0 173 44-223 95-319 (386)
124 3goz_A Leucine-rich repeat-con 99.5 6.4E-15 2.2E-19 119.8 4.9 174 44-220 52-266 (362)
125 1a9n_A U2A', U2A'; complex (nu 99.5 8.7E-14 3E-18 101.7 10.4 111 108-224 17-130 (176)
126 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.4E-18 99.5 12.0 90 37-146 27-118 (174)
127 2ast_B S-phase kinase-associat 99.5 1.3E-14 4.3E-19 116.6 5.7 170 44-217 94-282 (336)
128 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4.2E-19 119.0 4.9 172 44-221 61-288 (386)
129 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 98.3 11.5 87 39-145 26-114 (170)
130 3sb4_A Hypothetical leucine ri 99.5 2.4E-13 8.1E-18 109.1 10.7 176 32-213 111-327 (329)
131 2ast_B S-phase kinase-associat 99.5 5.6E-14 1.9E-18 112.8 6.0 174 44-225 119-311 (336)
132 1dce_A Protein (RAB geranylger 99.4 5.7E-13 1.9E-17 114.3 11.0 145 44-214 410-567 (567)
133 1ds9_A Outer arm dynein; leuci 99.4 6.3E-16 2.2E-20 115.3 -8.8 149 44-221 24-186 (198)
134 2ifg_A High affinity nerve gro 99.4 3.9E-12 1.4E-16 102.6 10.5 101 115-220 13-116 (347)
135 1z7x_W Ribonuclease inhibitor; 99.3 2.3E-13 8E-18 113.7 2.5 62 160-221 341-412 (461)
136 1ds9_A Outer arm dynein; leuci 99.3 3.2E-15 1.1E-19 111.5 -7.9 137 69-223 19-156 (198)
137 4fdw_A Leucine rich hypothetic 99.3 1.8E-11 6.3E-16 100.7 13.6 180 38-225 151-363 (401)
138 1z7x_W Ribonuclease inhibitor; 99.3 6.9E-13 2.4E-17 110.8 5.2 160 44-221 29-213 (461)
139 3un9_A NLR family member X1; l 99.3 4.5E-13 1.5E-17 109.3 1.4 160 44-221 73-253 (372)
140 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 97.2 9.0 101 21-146 12-116 (347)
141 3un9_A NLR family member X1; l 99.1 2.6E-11 8.8E-16 98.9 2.0 162 43-219 101-282 (372)
142 4fdw_A Leucine rich hypothetic 99.0 3.1E-09 1E-13 87.4 13.2 172 45-225 115-317 (401)
143 3ogk_B Coronatine-insensitive 99.0 5.6E-10 1.9E-14 96.0 8.2 169 44-215 139-326 (592)
144 3ogk_B Coronatine-insensitive 98.7 4.9E-09 1.7E-13 90.1 4.4 118 102-220 156-306 (592)
145 2p1m_B Transport inhibitor res 98.7 9.8E-09 3.4E-13 88.2 4.4 83 44-144 106-195 (594)
146 1io0_A Tropomodulin; LRR prote 98.6 4.7E-09 1.6E-13 77.1 0.4 120 101-220 27-164 (185)
147 1io0_A Tropomodulin; LRR prote 98.6 2.3E-08 7.7E-13 73.4 3.4 115 69-197 37-165 (185)
148 2p1m_B Transport inhibitor res 98.5 3.1E-08 1E-12 85.1 1.5 169 44-214 131-345 (594)
149 2ra8_A Uncharacterized protein 98.3 3.6E-07 1.2E-11 74.0 3.8 153 44-220 140-320 (362)
150 4fs7_A Uncharacterized protein 98.3 1.7E-05 5.8E-10 64.8 13.6 81 130-216 294-375 (394)
151 3rfe_A Platelet glycoprotein I 98.3 2E-06 6.9E-11 59.2 6.3 64 7-81 3-68 (130)
152 4gt6_A Cell surface protein; l 98.2 3.8E-05 1.3E-09 62.7 13.8 106 106-218 261-368 (394)
153 3rw6_A Nuclear RNA export fact 98.2 1.9E-06 6.7E-11 66.6 5.0 79 131-213 168-257 (267)
154 4h09_A Hypothetical leucine ri 98.1 3E-05 1E-09 62.9 11.6 102 109-216 239-342 (379)
155 2ra8_A Uncharacterized protein 98.1 7.9E-06 2.7E-10 66.1 8.1 153 44-218 173-341 (362)
156 4h09_A Hypothetical leucine ri 98.0 6.7E-05 2.3E-09 60.8 11.5 96 108-209 261-358 (379)
157 4fs7_A Uncharacterized protein 98.0 6.8E-05 2.3E-09 61.2 11.5 159 44-212 231-393 (394)
158 3rw6_A Nuclear RNA export fact 98.0 5.8E-06 2E-10 63.9 4.1 81 107-190 167-258 (267)
159 4gt6_A Cell surface protein; l 97.8 8.6E-05 2.9E-09 60.6 8.8 103 108-219 286-390 (394)
160 3e4g_A ATP synthase subunit S, 97.8 6.6E-06 2.2E-10 59.4 1.5 87 111-197 62-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.2E-05 1.1E-09 56.8 4.6 118 102-219 33-169 (197)
162 3e4g_A ATP synthase subunit S, 97.7 6.8E-05 2.3E-09 54.1 5.7 35 44-79 62-96 (176)
163 3rfe_A Platelet glycoprotein I 97.6 0.00011 3.8E-09 50.4 5.9 53 137-195 12-67 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00011 3.6E-09 54.1 4.1 90 106-195 66-169 (197)
165 2lz0_A Uncharacterized protein 69.7 11 0.00037 23.9 5.1 48 142-193 5-53 (100)
166 2lz0_A Uncharacterized protein 36.8 77 0.0026 19.8 6.1 47 121-171 7-54 (100)
No 1
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.9e-23 Score=163.69 Aligned_cols=197 Identities=26% Similarity=0.458 Sum_probs=135.4
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
.+..|.|.... ..+.|.. .-...+|..++.+++.|++++|.+..++..+|..++ +|+.|++++|.+.. +.
T Consensus 8 ~~~~C~c~~~~---~~l~~~~-----~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 8 DGGVCSCNNNK---NSVDCSS-----KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp GTCSBEEETTT---TEEECTT-----SCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCT-TCCEEECCSSCCSCCCT
T ss_pred CCCCCEeCCCC---CEEEccC-----CCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCC-CCCEEECCCCccCeeCh
Confidence 33446665321 2688866 223345666667899999999999999998899998 99999999999988 76
Q ss_pred CCCC-----------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253 85 AALR-----------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDD 152 (227)
Q Consensus 85 ~~~~-----------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 152 (227)
..|. .+.+..++. ..+.++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPI------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCT------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCH------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 6652 233333332 12334567777777777777763 34566777777777777777666555
Q ss_pred CCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 153 FIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 153 ~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+..+++ |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+..+..+++|+.|++++|++.
T Consensus 153 ~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 153 FDKLTS---LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTT---CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcc---cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 544444 777777777777665 34566677777777777777776666777777777777777654
No 2
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.2e-23 Score=163.49 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=147.1
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|.... ...+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus 2 CP~~C~C~~~~--~~~~~c~~-----~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~ 73 (285)
T 1ozn_A 2 CPGACVCYNEP--KVTTSCPQ-----QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDA 73 (285)
T ss_dssp CCTTCEEECSS--SCEEECCS-----SCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECT
T ss_pred cCCCceECCCC--CeEEEcCc-----CCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCH
Confidence 34447775332 24788876 233344555666899999999999999988888887 99999999999887 55
Q ss_pred CCCC-----------CCC-CCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCC
Q psy17253 85 AALR-----------PID-VCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD 151 (227)
Q Consensus 85 ~~~~-----------~~~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~ 151 (227)
..|. .+. +..++ +..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.+++.
T Consensus 74 ~~~~~l~~L~~L~l~~n~~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 74 AAFTGLALLEQLDLSDNAQLRSVD------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTTTTCTTCCEEECCSCTTCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhcCCccCCCEEeCCCCCCccccC------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 5552 222 33331 22344567888888888888876 55677788888888888888877666
Q ss_pred CCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 152 DFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 152 ~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.+..+++ |+.|++++|.++.++. .+..+++|+.|++++|++..+.+..+..+++|+.|++++|.++++|+
T Consensus 148 ~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 148 TFRDLGN---LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTTTCTT---CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred HhccCCC---ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 5555555 8888888888887763 46777888888888888887777778888888888888888877764
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=7.7e-23 Score=158.55 Aligned_cols=174 Identities=24% Similarity=0.410 Sum_probs=150.3
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. .-...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.. ++..|.
T Consensus 18 ~l~~~~-----~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~----------- 80 (251)
T 3m19_A 18 EVDCQG-----KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFD----------- 80 (251)
T ss_dssp EEECTT-----CCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTT-----------
T ss_pred EEecCC-----CCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcc-cCCEEECCCCcCCccCHhHhc-----------
Confidence 688876 333455666667899999999999999999999998 99999999999987 555543
Q ss_pred hchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG- 177 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~- 177 (227)
++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..+..+.+ |+.|++++|.++.++.
T Consensus 81 --------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 81 --------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK---LKELRLNTNQLQSIPAG 149 (251)
T ss_dssp --------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTT
T ss_pred --------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc---ccEEECcCCcCCccCHH
Confidence 3588999999999999985 56788999999999999999888776666665 9999999999998874
Q ss_pred hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
.+..+++|+.|++++|+++.+.+..+..+++|+.|++++|+++.-
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 678899999999999999999888999999999999999998654
No 4
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=8.5e-23 Score=161.62 Aligned_cols=176 Identities=26% Similarity=0.379 Sum_probs=125.1
Q ss_pred eEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcch
Q psy17253 20 IVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPST 98 (227)
Q Consensus 20 ~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~ 98 (227)
..+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.++. +...
T Consensus 13 ~~l~~~~-----~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~------------ 74 (290)
T 1p9a_G 13 LEVNCDK-----RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDG------------ 74 (290)
T ss_dssp CEEECTT-----SCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCT-TCCEEECTTSCCCEEECCS------------
T ss_pred cEEECCC-----CCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCC-CCCEEECCCCccCcccCCC------------
Confidence 3788866 223345555667899999999999999988999998 99999999999986 3321
Q ss_pred hhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253 99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G 177 (227)
Q Consensus 99 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~ 177 (227)
.+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+++..+..+++ |+.|++++|+++.++ .
T Consensus 75 ---------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~---L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 75 ---------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---LQELYLKGNELKTLPPG 142 (290)
T ss_dssp ---------CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---CCEEECTTSCCCCCCTT
T ss_pred ---------CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---CCEEECCCCCCCccChh
Confidence 245677777777777766666666677777777777777666555555544 777777777776665 3
Q ss_pred hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.+..+++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+|..
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 345666777777777777766666666677777777777777776654
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=159.37 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=158.3
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCC-C
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRP-D 83 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~ 83 (227)
+|..|.|... +.+.|.|... ..+|. ++.+++.|++++|.+..++...|..++ +|+.|++++|+ +.. +
T Consensus 4 cp~~C~C~~~--~~~~v~c~~l-------~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~ 72 (239)
T 2xwt_C 4 SSPPCECHQE--EDFRVTCKDI-------QRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLE 72 (239)
T ss_dssp CSSSCSEEEC--STTEEEECSC-------SSCCC-CCTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEEC
T ss_pred CCCCCeeCCC--CcceeEccCc-------cccCC-CCCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeC
Confidence 4445777531 2347889762 33444 556899999999999999998899998 99999999997 877 7
Q ss_pred CCCCCC-CCCCCCcc----hhhchh-hhhcCCCcccEEEccCCCcccccccccCCCCCC---EEEcCCC-cCcccCCCCC
Q psy17253 84 GAALRP-IDVCAPPS----TLDNLK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLS---RLDLSHN-KLRTISPDDF 153 (227)
Q Consensus 84 ~~~~~~-~~l~~~~~----~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~ 153 (227)
...|.. ..+..+.- .+..++ ..+.++++|+.|++++|.++.+|. +..+.+|+ .|++++| .++.+++..+
T Consensus 73 ~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 73 SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT
T ss_pred HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccc
Confidence 666622 11221111 112222 234467899999999999999887 88888888 9999999 9999888777
Q ss_pred CCCCCCCccc-EEEcCCCCCcCchhhhcCCCCCCEEeCCCCc-cccCCccccCCC-CCCCEEEcCCCcCcccCCC
Q psy17253 154 IGLDSVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGL-DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 154 ~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~lp~~ 225 (227)
..+.+ |+ .+++++|.++.+|.......+|+.|++++|+ ++.+.+..|..+ ++|+.|++++|.++++|+.
T Consensus 152 ~~l~~---L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 152 QGLCN---ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp TTTBS---SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred cchhc---ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 76666 99 9999999999888544444889999999995 999988889999 9999999999999999875
No 6
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=7.5e-23 Score=162.90 Aligned_cols=204 Identities=24% Similarity=0.412 Sum_probs=119.4
Q ss_pred CccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C--
Q psy17253 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D-- 83 (227)
Q Consensus 7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~-- 83 (227)
|..|.|... .+.|.. .-...+|..++.++++|++++|.+..++...|..++ +|+.|++++|.+.. .
T Consensus 2 P~~C~C~~~-----~l~c~~-----~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 2 PSRCSCSGT-----EIRCNS-----KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp CTTCEEETT-----EEECCS-----SCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEE
T ss_pred cCCCeeCCC-----EEEcCC-----CCcccCCCCCCCCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCc
Confidence 334566533 788977 233445556666899999999999999998899998 99999999999873 1
Q ss_pred CCC-----------CCCCCCCCCcchhhch----------------h--hhhcCCCcccEEEccCCCcccc-cccccCCC
Q psy17253 84 GAA-----------LRPIDVCAPPSTLDNL----------------K--NQVQGVTNIFELKLQHNEIENL-DGALMGIH 133 (227)
Q Consensus 84 ~~~-----------~~~~~l~~~~~~~~~~----------------~--~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~ 133 (227)
+.. ++.+.+..+|..+..+ . ..+..+++|+.|++++|.++.+ +..+..++
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 111 1333333333222111 0 1122344455555555554443 33444455
Q ss_pred CCCEEEcCCCcCcc-cCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCE
Q psy17253 134 GLSRLDLSHNKLRT-ISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 211 (227)
Q Consensus 134 ~L~~L~l~~n~l~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 211 (227)
+|+.|++++|.+.. ..+..+..+++ |+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..+..+++|+.
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred CCCEEECCCCccccccchhHHhhCcC---CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 55555555555543 22333333333 66666666666655 345556666666666666666665555666666777
Q ss_pred EEcCCCcCcccCC
Q psy17253 212 LDISHNLLTTLEE 224 (227)
Q Consensus 212 L~l~~n~l~~lp~ 224 (227)
|++++|.++++++
T Consensus 228 L~L~~N~l~~~~~ 240 (306)
T 2z66_A 228 LDYSLNHIMTSKK 240 (306)
T ss_dssp EECTTSCCCBCSS
T ss_pred eECCCCCCcccCH
Confidence 7777766665543
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.6e-21 Score=156.83 Aligned_cols=208 Identities=21% Similarity=0.441 Sum_probs=106.3
Q ss_pred CCCCCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCC
Q psy17253 2 RREINPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR 81 (227)
Q Consensus 2 ~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~ 81 (227)
|...++..|.|.-. .+.|... -...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.
T Consensus 21 ~~~~cp~~c~c~l~-----~l~~~~~-----~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~ 89 (330)
T 1xku_A 21 MGPVCPFRCQCHLR-----VVQCSDL-----GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKIS 89 (330)
T ss_dssp -CCCCCTTCEEETT-----EEECTTS-----CCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCC
T ss_pred ccCCCCCCCcCCCe-----EEEecCC-----CccccCccCCCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCC
Confidence 44445555666422 5777652 12233444445666666666666666666666665 6666666666666
Q ss_pred C-CCCCC-----------CCCCCCCCcchh--------------hch-hhhhcCCCcccEEEccCCCccc---ccccccC
Q psy17253 82 P-DGAAL-----------RPIDVCAPPSTL--------------DNL-KNQVQGVTNIFELKLQHNEIEN---LDGALMG 131 (227)
Q Consensus 82 ~-~~~~~-----------~~~~l~~~~~~~--------------~~~-~~~~~~l~~L~~L~l~~n~l~~---l~~~~~~ 131 (227)
. .+..| +.+.+..+|..+ ..+ +..+.++++|+.|++++|.++. .+..+..
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred eeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 5 44333 233343333211 011 1123344555555555555432 1333444
Q ss_pred CCCCCEE---------------------EcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEe
Q psy17253 132 IHGLSRL---------------------DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLD 189 (227)
Q Consensus 132 l~~L~~L---------------------~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~ 189 (227)
+++|+.| ++++|.++...+..+..+++ |+.|++++|.++.++ ..+..+++|+.|+
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN---LAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTT---CCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCC---CCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 4444444 44444444443333333333 666666666665554 3455556666666
Q ss_pred CCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+++|+++.+ |..+..+++|+.|++++|.++++|+
T Consensus 247 L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 247 LNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCcCccC-ChhhccCCCcCEEECCCCcCCccCh
Confidence 666666655 4455566666666666666666654
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=1.1e-21 Score=164.35 Aligned_cols=200 Identities=23% Similarity=0.416 Sum_probs=135.4
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|.... ..+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. ++
T Consensus 46 Cp~~C~C~~~~---~~v~c~~-----~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 46 CPSVCSCSNQF---SKVVCTR-----RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp CCTTSEECSSS---CEEECCS-----SCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECT
T ss_pred CCCCCEECCCC---cEEEECC-----CCcCccCCCCCCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcCh
Confidence 33347775322 2688876 333445566666888888888888888888888887 88888888888887 65
Q ss_pred CCC-----------CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-c------------------------
Q psy17253 85 AAL-----------RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-A------------------------ 128 (227)
Q Consensus 85 ~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~------------------------ 128 (227)
..| +.|.+..++.. .+.++++|+.|++++|.++.++. .
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSG------AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTT------TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred hhccCcccCCEEECCCCcCCccChh------hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 555 33334433321 12335666666666666655532 3
Q ss_pred -ccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCC
Q psy17253 129 -LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 206 (227)
Q Consensus 129 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~ 206 (227)
|..+++|+.|++++|.++.++ .+ ..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..|..+
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~--~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDMP--NL---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSCC--CC---TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hccCCCCCCEEECCCCcccccc--cc---cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 444455555555555555442 12 2334478888888888766 4667788888899999888888888888889
Q ss_pred CCCCEEEcCCCcCcccCCC
Q psy17253 207 DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp~~ 225 (227)
++|+.|++++|.++++|+.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp TTCCEEECCSSCCSCCCTT
T ss_pred CCCCEEECCCCcCCccChH
Confidence 9999999999999888864
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=3.2e-22 Score=173.29 Aligned_cols=178 Identities=23% Similarity=0.344 Sum_probs=151.9
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. .-+..+|..++..+++||+++|.|+.+++.+|..++ +|+.|++++|.+.. ++.+|..
T Consensus 35 ~~~c~~-----~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~---------- 98 (635)
T 4g8a_A 35 TYQCME-----LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQS---------- 98 (635)
T ss_dssp EEECTT-----SCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTT----------
T ss_pred EEECCC-----CCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcC----------
Confidence 789977 334556777888999999999999999999999998 99999999999998 7777753
Q ss_pred hchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc--h
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--D 176 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~ 176 (227)
+++|++|+|++|+++.+| ..|..+.+|++|++++|.++.+++..++.+++ |+.|++++|.++.+ |
T Consensus 99 ---------L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~---L~~L~Ls~N~l~~~~~~ 166 (635)
T 4g8a_A 99 ---------LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLP 166 (635)
T ss_dssp ---------CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred ---------CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc---cCeeccccCccccCCCc
Confidence 689999999999999985 57899999999999999999998877777766 99999999999854 5
Q ss_pred hhhcCCCCCCEEeCCCCccccCCccccCCCCC----CCEEEcCCCcCcccCCCC
Q psy17253 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS----LKMLDISHNLLTTLEETS 226 (227)
Q Consensus 177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~----L~~L~l~~n~l~~lp~~~ 226 (227)
..+..+++|+.|++++|+++.+.+..+..+.. ...++++.|.++.+++..
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 67788999999999999999987776665433 346889999998887653
No 10
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.4e-22 Score=155.74 Aligned_cols=195 Identities=21% Similarity=0.376 Sum_probs=116.9
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc-
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS- 97 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~- 97 (227)
.+.|... -...+|..++..+++|++++|.+..++...|..++ +|+.|++++|.+.. +...|... .+..+.-
T Consensus 11 ~~~c~~~-----~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 11 TYQCMEL-----NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp EEECTTS-----CCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEEecCC-----CccccCCCCCCCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence 6888773 23335556666899999999999999988899998 99999999999988 66555321 1111110
Q ss_pred --hhhchh-hhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccC-CCCCCCCCCCCcccEEEcCCCCC
Q psy17253 98 --TLDNLK-NQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 98 --~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
.+..+. ..+.++++|+.|++++|.++.++. .+..+++|+.|++++|.++... +..+..+++ |+.|++++|.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~---L~~L~Ls~N~l 161 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN---LEHLDLSSNKI 161 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT---CCEEECCSSCC
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC---CCEEECCCCCC
Confidence 011111 123344566666666666655532 4555666666666666655532 333333333 66666666666
Q ss_pred cCch-hhhcCCCCCC----EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 173 ENLD-GALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 173 ~~~~-~~~~~~~~L~----~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
+.++ ..+..+.+++ .+++++|.+..+.+..+.. .+|+.|++++|.++++|+.
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTT
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHh
Confidence 5543 3333333333 5666666666654444443 3677888888888877764
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=163.99 Aligned_cols=200 Identities=24% Similarity=0.426 Sum_probs=121.6
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|.... ..+.|.. .-+..+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. +.
T Consensus 35 Cp~~C~C~~~~---~~v~c~~-----~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~ 105 (440)
T 3zyj_A 35 CPSVCSCSNQF---SKVICVR-----KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEI 105 (440)
T ss_dssp CCSSSEECTTS---CEEECCS-----CCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECG
T ss_pred CCCCCEeCCCC---CEEEeCC-----CCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccCh
Confidence 33347776322 2688876 223334444445566666666666666656666665 66666666666655 43
Q ss_pred CCC-----------CCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-------------------------c-c
Q psy17253 85 AAL-----------RPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-------------------------D-G 127 (227)
Q Consensus 85 ~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-------------------------~-~ 127 (227)
..| +.|.+..++.. .+.++++|+.|++++|.++.+ + .
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCTT------TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred hhccCCccCCEEECCCCcCCeeCHh------HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 333 22333333221 112234444444444444433 2 2
Q ss_pred cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCC
Q psy17253 128 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 206 (227)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~ 206 (227)
.|..+++|+.|++++|.++.++ .+ ..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+.+..|..+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~~~--~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLREIP--NL---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSSCC--CC---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred hhhcccccCeecCCCCcCcccc--cc---CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 4555566666666666665443 12 2334478888888888766 3667788888888888888888888888888
Q ss_pred CCCCEEEcCCCcCcccCCC
Q psy17253 207 DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 207 ~~L~~L~l~~n~l~~lp~~ 225 (227)
++|+.|++++|.++++|+.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp TTCCEEECTTSCCCCCCTT
T ss_pred CCCCEEECCCCCCCccChh
Confidence 9999999999999888864
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.7e-21 Score=150.04 Aligned_cols=159 Identities=22% Similarity=0.307 Sum_probs=128.9
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA 94 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~ 94 (227)
+.+++....+..|.. ++++|++++|.+..++...|..++ +|+.|++++|.+.. +...| ..+.+..
T Consensus 45 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 444555656656665 899999999999999999899898 99999999999998 76665 3344444
Q ss_pred CcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc
Q psy17253 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173 (227)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 173 (227)
++. ..+..+++|+.|++++|.++.++. .|..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++
T Consensus 124 ~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~ 194 (270)
T 2o6q_A 124 LPP------RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE---LKTLKLDNNQLK 194 (270)
T ss_dssp CCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT---CCEEECCSSCCS
T ss_pred eCH------HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC---cCEEECCCCcCC
Confidence 332 223467899999999999999865 5788999999999999999988776666655 999999999999
Q ss_pred Cchh-hhcCCCCCCEEeCCCCcccc
Q psy17253 174 NLDG-ALMGIHGLSRLDLSHNKLRT 197 (227)
Q Consensus 174 ~~~~-~~~~~~~L~~l~l~~n~l~~ 197 (227)
.++. .+..+++|+.|++++|.+.-
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 195 RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCHHHhccccCCCEEEecCCCeeC
Confidence 8874 57788999999999998753
No 13
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=7e-22 Score=160.97 Aligned_cols=182 Identities=25% Similarity=0.366 Sum_probs=150.3
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhh-cccccccEEEccCCCCCC-C
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~~~~-~ 83 (227)
+|-.|.|... .+.|.. .-+..+|..++..++.|++++|.|..++...|. .+. +|+.|++++|.+.. +
T Consensus 12 Cp~~C~C~~~-----~l~c~~-----~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~~i~ 80 (361)
T 2xot_A 12 CPANCLCASN-----ILSCSK-----QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLNFIS 80 (361)
T ss_dssp CCTTCEEETT-----EEECCS-----SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCCEEC
T ss_pred CCCCCEECCC-----EEEeCC-----CCcCccCccCCCCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCCccC
Confidence 4444777643 688876 233445666777899999999999999998887 887 99999999999988 6
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 162 (227)
+..|. ++++|+.|+|++|.++.++ ..|..+++|+.|++++|.+..+.+..+..+.+ |
T Consensus 81 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~---L 138 (361)
T 2xot_A 81 SEAFV-------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ---L 138 (361)
T ss_dssp TTTTT-------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---C
T ss_pred hhhcc-------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc---C
Confidence 66554 3588999999999999985 46889999999999999999998888777766 9
Q ss_pred cEEEcCCCCCcCchhhh----cCCCCCCEEeCCCCccccCCccccCCCCC--CCEEEcCCCcCc
Q psy17253 163 FELKLQHNEIENLDGAL----MGIHGLSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLT 220 (227)
Q Consensus 163 ~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~ 220 (227)
+.|++++|.++.+|..+ ..+++|+.|++++|+++.+.+..+..++. ++.|++.+|+++
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999999998543 56899999999999999997777887776 478999999874
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.2e-21 Score=167.80 Aligned_cols=191 Identities=18% Similarity=0.244 Sum_probs=153.7
Q ss_pred CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253 5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~ 83 (227)
++++.|.|..... .+.|.. .-...+|..++..++.|++++|.+..+++..|..++ +|+.|++++|.+.. .
T Consensus 3 ~~~~~C~~~~~~~---~~~c~~-----~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~ 73 (606)
T 3t6q_A 3 SSDQKCIEKEVNK---TYNCEN-----LGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIYWIH 73 (606)
T ss_dssp ---CCCEEEETTT---EEECTT-----SCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCCCEEC
T ss_pred cccCceecccCCc---eEECCC-----CCcccCcCCCCCcCcEEEccCCccCcCChhHhccCc-cceEEECCCCccceeC
Confidence 4555566653322 788977 334456677777899999999999999988999998 99999999999987 6
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 162 (227)
+..|. ++++|+.|++++|.++.+ |..|..+++|++|++++|.++.+.+..+..+++ |
T Consensus 74 ~~~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~---L 131 (606)
T 3t6q_A 74 EDTFQ-------------------SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT---L 131 (606)
T ss_dssp TTTTT-------------------TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT---C
T ss_pred hhhcc-------------------CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc---c
Confidence 66654 357899999999999886 778889999999999999998876666665555 9
Q ss_pred cEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC--EEEcCCCcCcccCCCC
Q psy17253 163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK--MLDISHNLLTTLEETS 226 (227)
Q Consensus 163 ~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~--~L~l~~n~l~~lp~~~ 226 (227)
+.|++++|.+..++ ..+..+++|+.|++++|.+..+.+..++.+++++ .|++++|.++++++.+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 99999999998764 4445588999999999999988888888898888 8999999998887653
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.5e-21 Score=162.16 Aligned_cols=200 Identities=26% Similarity=0.408 Sum_probs=143.2
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|.... ..+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus 3 Cp~~C~C~~~~---~~v~c~~-----~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~ 73 (477)
T 2id5_A 3 CPPRCECSAQD---RAVLCHR-----KRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEP 73 (477)
T ss_dssp CSTTCEEETTT---TEEECCS-----CCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECT
T ss_pred ccCCCeECCCC---CEEEeCC-----CCcCcCCCCCCCCCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeCh
Confidence 44457775321 2688876 333445666677899999999999999888899998 99999999999988 66
Q ss_pred CCCC-----------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253 85 AALR-----------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD 152 (227)
Q Consensus 85 ~~~~-----------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~ 152 (227)
..|. .+.+..+|.. .+.++++|+.|++++|.++.+ +..|..+++|+.|++++|.+..+.+..
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLKLIPLG------VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCTT------SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred hhhhCCccCCEEECCCCcCCccCcc------cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh
Confidence 6652 2333333321 233457788888888877775 556777777888888888777776666
Q ss_pred CCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc-CcccC
Q psy17253 153 FIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLE 223 (227)
Q Consensus 153 ~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp 223 (227)
+..+++ |+.|++++|.++.++ ..+..+++|+.|++++|.+..+.+..|..+++|+.|++++|. +..+|
T Consensus 148 ~~~l~~---L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 148 FSGLNS---LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp STTCTT---CCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred ccCCCC---CCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 655555 778888888877776 456777788888888888877767777788888888887765 34444
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.8e-21 Score=166.31 Aligned_cols=178 Identities=22% Similarity=0.353 Sum_probs=149.7
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. .-...+|..++.++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..|.
T Consensus 15 ~~~c~~-----~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~----------- 77 (606)
T 3vq2_A 15 TYQCMD-----QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWH----------- 77 (606)
T ss_dssp EEECTT-----SCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTT-----------
T ss_pred ceEccC-----CCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccCHHHhh-----------
Confidence 788977 334445566667899999999999999998999998 99999999999987 666654
Q ss_pred hchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC--ch
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN--LD 176 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~ 176 (227)
++++|+.|++++|.++.+ |..|..+++|++|++++|.+...++..+..+.+ |+.|++++|.+.. +|
T Consensus 78 --------~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 78 --------GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT---LKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp --------TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred --------chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC---CCEEeCCCCcccceech
Confidence 357899999999999987 788999999999999999998887766666665 9999999999884 67
Q ss_pred hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC----EEEcCCCcCcccCCCC
Q psy17253 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK----MLDISHNLLTTLEETS 226 (227)
Q Consensus 177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~----~L~l~~n~l~~lp~~~ 226 (227)
..+..+++|+.|++++|+++.+.+..++.+..++ .+++++|.++++|+..
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 8889999999999999999988777777665554 7999999999888753
No 17
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.4e-21 Score=157.21 Aligned_cols=203 Identities=21% Similarity=0.375 Sum_probs=151.3
Q ss_pred ccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCC
Q psy17253 10 CKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAAL 87 (227)
Q Consensus 10 c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~ 87 (227)
|.|... .|.|.. .-+..+|..++.++++|++++|.|+.++.++|.+++ +|+.|++++|.+.+ +..+|
T Consensus 7 C~C~~~-----~v~C~~-----~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 7 CHCSNR-----VFLCQE-----SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp SEEETT-----EEEEES-----TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSB
T ss_pred cEeeCC-----EEEecC-----CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHh
Confidence 666532 789976 223345666667899999999999999999999998 99999999999866 66676
Q ss_pred CCCC-CCCCc----chhhch-hhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCC-CcCcccCCCCCCCCCCC
Q psy17253 88 RPID-VCAPP----STLDNL-KNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSV 159 (227)
Q Consensus 88 ~~~~-l~~~~----~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~ 159 (227)
.... +..+- ..+..+ +..+.++++|+.|++++|.++.++. .+.....+..+++.+ +.+..++...+..+..
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~- 154 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF- 154 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-
Confidence 4321 11110 012222 2334567899999999999988754 445556777888755 5677777766655432
Q ss_pred CcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC-CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 160 ~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.++.|++++|+++.++.......+++.+++.+ |.++.+++++|..+++|+.|++++|+++++|+.
T Consensus 155 -~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 155 -ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp -SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred -hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 37889999999998886666667888999875 778888888899999999999999999999875
No 18
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.5e-21 Score=143.93 Aligned_cols=174 Identities=22% Similarity=0.370 Sum_probs=136.8
Q ss_pred CccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC
Q psy17253 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA 85 (227)
Q Consensus 7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~ 85 (227)
|..|.|.+. .+.|.. .....+|..+..++++|++++|.+..++...|..++ +|+.|++++|.+.. +..
T Consensus 2 p~~C~C~~~-----~v~c~~-----~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 2 PSRCSCSGT-----TVECYS-----QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp CTTCEEETT-----EEECCS-----SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTT
T ss_pred cCCCEECCC-----EEEecC-----CCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChh
Confidence 334555533 788876 223334555566899999999999999999899998 99999999999987 555
Q ss_pred CCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccE
Q psy17253 86 ALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164 (227)
Q Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 164 (227)
.|. ++++|++|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++ |+.
T Consensus 71 ~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~ 128 (208)
T 2o6s_A 71 VFN-------------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ---LKD 128 (208)
T ss_dssp TTT-------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCE
T ss_pred hcC-------------------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc---CCE
Confidence 543 35889999999999998855 4688999999999999999887766666655 999
Q ss_pred EEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 165 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 165 l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
|++++|.++.++. .+..+++|+.|++++|.+.. .++.++.|++..|.++
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 9999999998874 46788999999999997643 3455666666666655
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.2e-20 Score=151.88 Aligned_cols=204 Identities=25% Similarity=0.491 Sum_probs=105.6
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|.-. .+.|... . ...+|..+..+++.|++++|.+..++...|..++ +|+.|++++|.+.. .+
T Consensus 27 cp~~c~c~l~-----~l~~~~~----~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 27 CPFGCHCHLR-----VVQCSDL----G-LKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHE 95 (332)
T ss_dssp CCSSCEEETT-----EEECCSS----C-CSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECG
T ss_pred CCCCCcccCC-----EEECCCC----C-ccccCCCCCCCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCH
Confidence 4444555422 5677552 2 2233444445677777777777766666666666 67777777776665 44
Q ss_pred CCC-----------CCCCCCCCcchhh--------------chh-hhhcCCCcccEEEccCCCccc--c-cccccCC---
Q psy17253 85 AAL-----------RPIDVCAPPSTLD--------------NLK-NQVQGVTNIFELKLQHNEIEN--L-DGALMGI--- 132 (227)
Q Consensus 85 ~~~-----------~~~~l~~~~~~~~--------------~~~-~~~~~l~~L~~L~l~~n~l~~--l-~~~~~~l--- 132 (227)
..| +.+.+..+|..+. .++ ..+.++++|+.|++++|.++. + +..+..+
T Consensus 96 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~ 175 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175 (332)
T ss_dssp GGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCS
T ss_pred hHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccC
Confidence 333 3344444443221 011 112344555566665555542 1 2222222
Q ss_pred -----------------CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCc
Q psy17253 133 -----------------HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNK 194 (227)
Q Consensus 133 -----------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~ 194 (227)
++|+.|++++|.++...+..+..+ ++|+.|++++|.++.++ ..+..+++|+.|++++|+
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY---SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTC---TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCC---CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 123333333333333333333322 23666666666666554 345566666666666666
Q ss_pred cccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 195 l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++.+ |..+..+++|+.|++++|.++++|.
T Consensus 253 l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 253 LSRV-PAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp CCBC-CTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred Ceec-ChhhhcCccCCEEECCCCCCCccCh
Confidence 6655 4446666667777777776666654
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.4e-20 Score=143.10 Aligned_cols=159 Identities=19% Similarity=0.428 Sum_probs=125.1
Q ss_pred CCCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-C
Q psy17253 5 INPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 5 ~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~ 83 (227)
.+|..|.|... .+.|.. .-...+|..++..++.|++++|.+..++...|..++ +|+.|++++|.+.. .
T Consensus 4 ~CP~~C~C~~~-----~v~c~~-----~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 4 HCPAACTCSNN-----IVDCRG-----KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELA 72 (220)
T ss_dssp CSCTTSEEETT-----EEECTT-----SCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEEC
T ss_pred CCCCCCEECCC-----EEEcCC-----CCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcC
Confidence 35555777643 688876 223344555666899999999999999988898888 99999999999887 5
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 162 (227)
+..|. ++++|+.|++++|.++.+|. .|..+++|+.|++++|.++.+.+..+..+++ |
T Consensus 73 ~~~~~-------------------~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L 130 (220)
T 2v9t_B 73 PDAFQ-------------------GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN---L 130 (220)
T ss_dssp TTTTT-------------------TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---C
T ss_pred HHHhh-------------------CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC---C
Confidence 55553 35789999999999988865 4677889999999999998887777766665 8
Q ss_pred cEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccc
Q psy17253 163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 163 ~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~ 196 (227)
+.|++++|.++.++ ..+..+++|+.+++++|.+.
T Consensus 131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88999999988876 45677888899999988874
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.9e-20 Score=147.60 Aligned_cols=183 Identities=21% Similarity=0.301 Sum_probs=149.3
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC-CCC-CCCCC-----------CCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN-LRP-DGAAL-----------RPIDVC 93 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~-----------~~~~l~ 93 (227)
+.+.+....+..|.. ++++|++++|.+..+....|..++ +|+.|++++|. +.. ++..| ..+.+.
T Consensus 40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 344555555565655 899999999999998888899888 99999999997 776 55555 233333
Q ss_pred CCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253 94 APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
.++ +..+.++++|+.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++ |+.|++++|.+
T Consensus 119 ~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l 189 (285)
T 1ozn_A 119 ELG------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS---LDRLLLHQNRV 189 (285)
T ss_dssp CCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---CCEEECCSSCC
T ss_pred EEC------HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc---cCEEECCCCcc
Confidence 332 2234567899999999999999854 5888999999999999999988776766665 99999999999
Q ss_pred cCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 173 ~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+.+ +..+..+++|+.|++++|+++.+.+..+..+++|+.|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 877 5778889999999999999999988889999999999999998763
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=156.74 Aligned_cols=187 Identities=24% Similarity=0.379 Sum_probs=143.7
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA 94 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~ 94 (227)
+.+++....+..|.. +|+.|++++|.+..++..+|..++ +|+.|++++|.++. +...| +.|.+..
T Consensus 72 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 344555555555554 677777777777777777777776 77777777777776 55444 3333433
Q ss_pred Ccc-hhh-----------------chh-hhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253 95 PPS-TLD-----------------NLK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 155 (227)
Q Consensus 95 ~~~-~~~-----------------~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 155 (227)
++. .+. .++ ..+.++++|+.|++++|.++.+|. +..+++|+.|++++|.++.+.+..+..
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence 332 111 111 134568999999999999999885 788999999999999999998888777
Q ss_pred CCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 156 ~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+++ |+.|++++|+++.++ ..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.
T Consensus 230 l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 LMH---LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTT---CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred Ccc---CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 766 999999999999875 56788999999999999999998889999999999999999863
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=8.4e-21 Score=148.94 Aligned_cols=186 Identities=22% Similarity=0.281 Sum_probs=150.8
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCC-----------CCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----------PIDVCA 94 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----------~~~l~~ 94 (227)
+.+.+....+..+.. ++++|++++|.+..++..+|..++ +|+.|++++|.+.. +...|. .+.+..
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEECCCCCccc
Confidence 445566666656655 899999999999999988899998 99999999999988 665552 333333
Q ss_pred CcchhhchhhhhcCCCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc-EEEcCCCC
Q psy17253 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF-ELKLQHNE 171 (227)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~-~l~l~~n~ 171 (227)
++.. .+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++.+++..+..+..++.+. .+++++|.
T Consensus 115 ~~~~------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 115 LENF------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp STTC------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred cCch------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 3221 24457899999999999987 588899999999999999999998777666666644444 89999999
Q ss_pred CcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 172 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
++.++.......+|+.|++++|+++.+.+..+..+++|+.|++++|+++.
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99887655555689999999999999988888999999999999999874
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=5.2e-20 Score=154.09 Aligned_cols=187 Identities=25% Similarity=0.386 Sum_probs=143.6
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA 94 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~ 94 (227)
+.+.+....+..|.. +|+.|++++|.+..++...|..++ +|+.|++++|.+.. +...| +.|.+..
T Consensus 83 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 83 MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 344555555555554 677777777777777767777776 77777777777776 55544 3344443
Q ss_pred Ccc-hhhc-----------------hh-hhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCC
Q psy17253 95 PPS-TLDN-----------------LK-NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 155 (227)
Q Consensus 95 ~~~-~~~~-----------------~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 155 (227)
++. .+.. ++ ..+.++++|+.|++++|.++.+|. +..+++|+.|++++|.++.+.+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC
Confidence 332 1111 11 134568899999999999999865 788999999999999999998877777
Q ss_pred CCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 156 ~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+++ |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+..|..+++|+.|++++|++.
T Consensus 241 l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 LSS---LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccC---CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 766 999999999999875 66788999999999999999998889999999999999999864
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1e-19 Score=140.90 Aligned_cols=156 Identities=25% Similarity=0.374 Sum_probs=135.8
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
..+.++++++.+..+|.... . .++.|++++|.+.. ++..|. ++++|+.|++++|.+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~-~l~~L~L~~n~l~~~~~~~~~-------------------~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---A-DTEKLDLQSTGLATLSDATFR-------------------GLTKLTWLNLDYNQL 71 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---T-TCCEEECTTSCCCCCCTTTTT-------------------TCTTCCEEECTTSCC
T ss_pred CCeEEecCCCCccccCCCCC---C-CCCEEEccCCCcCccCHhHhc-------------------CcccCCEEECCCCcC
Confidence 36789999999999997532 3 89999999999987 555543 358999999999999
Q ss_pred ccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCc
Q psy17253 123 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISP 200 (227)
Q Consensus 123 ~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~ 200 (227)
+.+ +..|..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChhHhcccCC---CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 997 556889999999999999999988777766665 9999999999998874 46889999999999999999988
Q ss_pred cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 201 DDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
..|..+++|+.|++++|.++++|+.
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHH
Confidence 8899999999999999999999874
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=153.53 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=111.6
Q ss_pred hcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCC-----------CCCCCCCcchhhch
Q psy17253 35 DALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----------PIDVCAPPSTLDNL 102 (227)
Q Consensus 35 ~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----------~~~l~~~~~~~~~~ 102 (227)
..+|..+..++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..|. .|.+..++..
T Consensus 44 ~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---- 118 (353)
T 2z80_A 44 NSIPSGLTEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS---- 118 (353)
T ss_dssp SSCCTTCCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH----
T ss_pred ccccccccccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh----
Confidence 344556666899999999999999998899998 99999999999988 665553 2222222211
Q ss_pred hhhhcCCCcccEEEccCCCcccccc--cccCCCCCCEEEcCCC-cCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhh
Q psy17253 103 KNQVQGVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGA 178 (227)
Q Consensus 103 ~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~ 178 (227)
.+.++++|+.|++++|.++.+|. .+..+++|+.|++++| .+..+.+..+..+++ |+.|++++|.++.+ |..
T Consensus 119 --~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 119 --WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF---LEELEIDASDLQSYEPKS 193 (353)
T ss_dssp --HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE---EEEEEEEETTCCEECTTT
T ss_pred --HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC---CCEEECCCCCcCccCHHH
Confidence 12344566666666666665543 4555666666666655 345444444443333 66666666665544 344
Q ss_pred hcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 179 ~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+..+++|+.|++++|++..+....+..+++|+.|++++|.+++++
T Consensus 194 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 555566666666666665553333444566666666666666654
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=158.74 Aligned_cols=177 Identities=24% Similarity=0.360 Sum_probs=150.3
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|... -...+|..++..++.|++++|.+..++..+|..++ +|+.|++++|.+.. ++..|.
T Consensus 11 ~~~c~~~-----~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~----------- 73 (570)
T 2z63_A 11 TYQCMEL-----NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQ----------- 73 (570)
T ss_dssp EEECCSS-----CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTT-----------
T ss_pred EEEeCCC-----CccccCCCccccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCccccc-----------
Confidence 6889762 23345556667899999999999999998999998 99999999999987 666554
Q ss_pred hchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC--ch
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN--LD 176 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~--~~ 176 (227)
++++|++|++++|.++.+ +..|..+++|++|++++|.++.++...+..+.+ |++|++++|.++. +|
T Consensus 74 --------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~---L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 74 --------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLP 142 (570)
T ss_dssp --------TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT---CCEEECCSSCCCCCCCC
T ss_pred --------CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccc---ccEEecCCCccceecCh
Confidence 358899999999999987 468899999999999999999887666666655 9999999999885 57
Q ss_pred hhhcCCCCCCEEeCCCCccccCCccccCCCCCC----CEEEcCCCcCcccCCC
Q psy17253 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL----KMLDISHNLLTTLEET 225 (227)
Q Consensus 177 ~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L----~~L~l~~n~l~~lp~~ 225 (227)
..+..+++|+.|++++|+++.+.+..++.+..| ..+++++|.++.+++.
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 888899999999999999998877788877777 8899999999988765
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=2.5e-19 Score=136.92 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=90.8
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. +...|.
T Consensus 23 ~v~c~~-----~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~----------- 85 (229)
T 3e6j_A 23 TVDCRS-----KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFD----------- 85 (229)
T ss_dssp EEECTT-----SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-----------
T ss_pred EeEccC-----CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcc-----------
Confidence 577765 223344444556788888888888877777777776 77777777777765 444432
Q ss_pred hchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G 177 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~ 177 (227)
++++|+.|++++|.++.++. .|..+++|+.|++++|.++.++. .+..++ +|+.|++++|+++.++ .
T Consensus 86 --------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~---~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 86 --------SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLT---HLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp --------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCT---TCSEEECCSSCCCCCCTT
T ss_pred --------cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCC---CCCEEECCCCcCCccCHH
Confidence 24566777777776666643 34566666666666666665432 233333 3666666666666655 3
Q ss_pred hhcCCCCCCEEeCCCCccc
Q psy17253 178 ALMGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~ 196 (227)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 4555666666666666654
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=3.3e-19 Score=139.64 Aligned_cols=154 Identities=26% Similarity=0.390 Sum_probs=122.2
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
++++|++++|.+..++ .+..++ +|+.|++++|.+.. ++..|. ++++|+.|++++|.+
T Consensus 64 ~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~L~~n~l~~~~~~~~~-------------------~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS--ALKELT-NLTYLILTGNQLQSLPNGVFD-------------------KLTNLKELVLVENQL 121 (272)
T ss_dssp TCCEEECTTSCCCCCG--GGTTCT-TCCEEECTTSCCCCCCTTTTT-------------------TCTTCCEEECTTSCC
T ss_pred CCcEEECCCCCCCCch--hhcCCC-CCCEEECCCCccCccChhHhc-------------------CCcCCCEEECCCCcC
Confidence 5777777777777664 466666 77777777777765 444332 357899999999999
Q ss_pred ccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCc
Q psy17253 123 ENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISP 200 (227)
Q Consensus 123 ~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~ 200 (227)
+.++. .+..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 98754 5788899999999999998887766655555 9999999999988764 45788999999999999999888
Q ss_pred cccCCCCCCCEEEcCCCcCccc
Q psy17253 201 DDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~l 222 (227)
..+..+++|+.|++++|++..-
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHhCCcCCCEEEccCCCcccc
Confidence 8889999999999999987643
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.1e-19 Score=146.21 Aligned_cols=190 Identities=22% Similarity=0.361 Sum_probs=138.7
Q ss_pred cchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcch-
Q psy17253 31 GQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPST- 98 (227)
Q Consensus 31 ~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~- 98 (227)
+.+....+..+.. ++++|++++|.+..++...|..++ +|+.|++++|.+.. +...+ ..+.+..++..
T Consensus 64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 142 (332)
T 2ft3_A 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR-KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGV 142 (332)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT-TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGG
T ss_pred CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC-CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhH
Confidence 4444555555554 677788887777777667777776 77777777777776 54433 33444444331
Q ss_pred hhchhh-------------------hhcC--------------------CCcccEEEccCCCccccc-ccccCCCCCCEE
Q psy17253 99 LDNLKN-------------------QVQG--------------------VTNIFELKLQHNEIENLD-GALMGIHGLSRL 138 (227)
Q Consensus 99 ~~~~~~-------------------~~~~--------------------l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L 138 (227)
+..++. .+.. .++|+.|++++|.++.++ ..+..+++|+.|
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 221111 0111 146778888888888774 678899999999
Q ss_pred EcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCC------CCCCEE
Q psy17253 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------DSLKML 212 (227)
Q Consensus 139 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~------~~L~~L 212 (227)
++++|.++..++..+..+++ |+.|++++|.++.+|..+..+++|+.|++++|+++.+++..|... ..++.+
T Consensus 223 ~L~~N~l~~~~~~~~~~l~~---L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L 299 (332)
T 2ft3_A 223 GLGHNQIRMIENGSLSFLPT---LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299 (332)
T ss_dssp BCCSSCCCCCCTTGGGGCTT---CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred ECCCCcCCcCChhHhhCCCC---CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence 99999999988777666655 999999999999999888999999999999999999987777653 668999
Q ss_pred EcCCCcCc--ccCC
Q psy17253 213 DISHNLLT--TLEE 224 (227)
Q Consensus 213 ~l~~n~l~--~lp~ 224 (227)
++.+|++. .+++
T Consensus 300 ~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 300 SLFNNPVPYWEVQP 313 (332)
T ss_dssp ECCSSSSCGGGSCG
T ss_pred EeecCcccccccCc
Confidence 99999987 4443
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=136.24 Aligned_cols=158 Identities=26% Similarity=0.525 Sum_probs=125.5
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCC-ChhhhhcccccccEEEccCCCCCC-C
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDL-PSKTFQELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~ 83 (227)
+|-.|.|... .+.|... . ...+|..++..++.|++++|.+..+ +...|..++ +|+.|++++|.+.. +
T Consensus 5 CP~~C~C~~~-----~l~~s~n----~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~ 73 (220)
T 2v70_A 5 CPEKCRCEGT-----TVDCSNQ----K-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIE 73 (220)
T ss_dssp CCTTCEEETT-----EEECCSS----C-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEEC
T ss_pred CCCCCEECCC-----EeEeCCC----C-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEEC
Confidence 4445777643 6888662 2 2335666666789999999999988 456688887 99999999999887 6
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 162 (227)
+..|. ++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+.+..+..+.+ |
T Consensus 74 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L 131 (220)
T 2v70_A 74 EGAFE-------------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS---V 131 (220)
T ss_dssp TTTTT-------------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT---C
T ss_pred HHHhC-------------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc---C
Confidence 55554 3578999999999999874 46888999999999999999888777776666 9
Q ss_pred cEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccc
Q psy17253 163 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196 (227)
Q Consensus 163 ~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~ 196 (227)
+.|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 132 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999887 567788899999999999875
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.5e-19 Score=158.36 Aligned_cols=176 Identities=24% Similarity=0.417 Sum_probs=110.8
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. .-...+|..++.+++.|++++|.+..++...|..++ +|+.|++++|.+.. ++..|
T Consensus 8 ~~~cs~-----~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~------------ 69 (680)
T 1ziw_A 8 VADCSH-----LKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELC------------ 69 (680)
T ss_dssp EEECCS-----SCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCCCCCTTHH------------
T ss_pred eeECCC-----CCccccccccCCCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccCccCHHHH------------
Confidence 688876 223345566667899999999999999999999998 99999999999887 44433
Q ss_pred hchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G 177 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~ 177 (227)
.++++|+.|++++|.++.+|. .|..+++|++|++++|.+..+++..+..+++ |+.|++++|.++..+ .
T Consensus 70 -------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 70 -------QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN---LITLDLSHNGLSSTKLG 139 (680)
T ss_dssp -------HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT---CCEEECCSSCCSCCCCC
T ss_pred -------hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC---CCEEECCCCcccccCch
Confidence 123556666666666555543 4555566666666666555555444444443 556666666555443 3
Q ss_pred hhcCCCCCCEEeCCCCccccCCccccC--CCCCCCEEEcCCCcCcccCC
Q psy17253 178 ALMGIHGLSRLDLSHNKLRTISPDDFI--GLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~lp~ 224 (227)
.+..+++|+.|++++|.++.+.+..+. .+++|+.|++++|.++++++
T Consensus 140 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 345555566666666655555443332 33555666666665555544
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5.3e-20 Score=147.07 Aligned_cols=181 Identities=21% Similarity=0.253 Sum_probs=110.4
Q ss_pred cccCCCCC--CccEEEeCC-CCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC-CCcchh
Q psy17253 36 ALQDRFGN--DSISLKIAV-SNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC-APPSTL 99 (227)
Q Consensus 36 ~~~~~~~~--~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~-~~~~~~ 99 (227)
.+|..+.. ++++|++++ |.+....+..|..++ +|+.|++++|.+.+ .+..| +.|.+. .+|..
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~- 144 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS- 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-
Confidence 44444444 788888884 777654445577776 78888888888774 33333 223332 23332
Q ss_pred hchhhhhcCCCcccEEEccCCCcc-cccccccCCC-CCCEEEcCCCcCcccCCCCCCCC--------------------C
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIE-NLDGALMGIH-GLSRLDLSHNKLRTISPDDFIGL--------------------D 157 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~--------------------~ 157 (227)
+..+++|+.|++++|.++ .+|..+..+. +|+.|++++|.+++..+..+..+ .
T Consensus 145 ------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 145 ------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp ------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCC
T ss_pred ------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHh
Confidence 233455666666666665 3455555554 55555555555543333222211 1
Q ss_pred CCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc-ccCC
Q psy17253 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEE 224 (227)
Q Consensus 158 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~lp~ 224 (227)
.+++|+.|++++|.++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.++ .+|.
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 233477777777777655444666778888888888887666778888888888888888887 4444
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.5e-19 Score=149.81 Aligned_cols=184 Identities=21% Similarity=0.386 Sum_probs=130.0
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--C
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--D 83 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~ 83 (227)
++..|.|... .+.|.. .-...+|. ++.++++|++++|.+..++...|..++ +|+.|++++|.+.. +
T Consensus 4 ~~~~c~~~~~-----~~~c~~-----~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~ 71 (455)
T 3v47_A 4 GTSECSVIGY-----NAICIN-----RGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIR 71 (455)
T ss_dssp ---CCEEETT-----EEECCS-----SCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEEC
T ss_pred ccceeEEEcc-----ccCcCC-----CCcccCCC-CCCccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceEC
Confidence 3344666533 688876 22333444 566899999999999999888899998 99999999999874 4
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCccc--CCCCCCCCCCCC
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI--SPDDFIGLDSVT 160 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~~~ 160 (227)
+..|. ++++|++|++++|.++.+ |..|..+++|++|++++|.+++. ....+..+++
T Consensus 72 ~~~~~-------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-- 130 (455)
T 3v47_A 72 NNTFR-------------------GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-- 130 (455)
T ss_dssp TTTTT-------------------TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT--
T ss_pred ccccc-------------------ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc--
Confidence 54443 357888888888888876 67788888888888888888763 2223444444
Q ss_pred cccEEEcCCCCCcCc-hhh-hcCCCCCCEEeCCCCccccCCccccCCC--CCCCEEEcCCCcCcccC
Q psy17253 161 NIFELKLQHNEIENL-DGA-LMGIHGLSRLDLSHNKLRTISPDDFIGL--DSLKMLDISHNLLTTLE 223 (227)
Q Consensus 161 ~L~~l~l~~n~~~~~-~~~-~~~~~~L~~l~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~lp 223 (227)
|+.|++++|.++.+ |.. +..+++|+.|++++|++..+.+..+..+ ..++.+++++|.+.+++
T Consensus 131 -L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 131 -LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp -CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred -CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccc
Confidence 88888888888766 433 6778888888888888887766655544 34445555555544444
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=4.4e-19 Score=140.24 Aligned_cols=165 Identities=25% Similarity=0.304 Sum_probs=137.2
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhh
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQ 105 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 105 (227)
+.+.+....+..+.. +++.|++++|.+..++.. ..++ +|+.|++++|.+.. +. .+
T Consensus 39 ~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~-~L~~L~Ls~N~l~~l~~-~~------------------ 96 (290)
T 1p9a_G 39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP-VLGTLDLSHNQLQSLPL-LG------------------ 96 (290)
T ss_dssp TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT-TCCEEECCSSCCSSCCC-CT------------------
T ss_pred CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC-cCCEEECCCCcCCcCch-hh------------------
Confidence 445666666666665 899999999999988764 5676 99999999999876 32 11
Q ss_pred hcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCC
Q psy17253 106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIH 183 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~ 183 (227)
.++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.+++..+..+++ |+.|++++|+++.+|. .+..++
T Consensus 97 -~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 97 -QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---LEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp -TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECTTSCCSCCCTTTTTTCT
T ss_pred -ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC---CCEEECCCCcCCccCHHHhcCcC
Confidence 23588999999999999985 67899999999999999999988877666666 9999999999999984 457899
Q ss_pred CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+|+.|++++|+++.+ |..+.....|+.+++++|++.
T Consensus 173 ~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBC
T ss_pred CCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCcc
Confidence 999999999999988 555566779999999999874
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=1.1e-18 Score=140.14 Aligned_cols=189 Identities=20% Similarity=0.329 Sum_probs=141.8
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcc
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPS 97 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~ 97 (227)
+.+.+.+..+..+.. ++++|++++|.+..+.+..|..++ +|+.|++++|.++. +...+ ..+.+..++.
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 138 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH
T ss_pred CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC-CCCEEECCCCcCCccChhhcccccEEECCCCcccccCH
Confidence 344555555555654 799999999999988777888887 89999999998887 55443 3344443332
Q ss_pred h-hhc-------------------hhhhhcCC---------------------CcccEEEccCCCcccc-cccccCCCCC
Q psy17253 98 T-LDN-------------------LKNQVQGV---------------------TNIFELKLQHNEIENL-DGALMGIHGL 135 (227)
Q Consensus 98 ~-~~~-------------------~~~~~~~l---------------------~~L~~L~l~~n~l~~l-~~~~~~l~~L 135 (227)
. +.. ....+.++ ++|+.|++++|.++.+ +..+..+++|
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 1 111 11112223 4566666666666665 5678889999
Q ss_pred CEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCC------CCC
Q psy17253 136 SRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------DSL 209 (227)
Q Consensus 136 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~------~~L 209 (227)
+.|++++|.++..++..+..+++ |+.|++++|.++.+|..+..+++|+.|++++|+++.+.+..|... ..+
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPH---LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTT---CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred CEEECCCCcCceeChhhccCCCC---CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 99999999999988766666555 999999999999999888899999999999999999987777543 678
Q ss_pred CEEEcCCCcCcc
Q psy17253 210 KMLDISHNLLTT 221 (227)
Q Consensus 210 ~~L~l~~n~l~~ 221 (227)
+.+++.+|++..
T Consensus 296 ~~l~l~~N~~~~ 307 (330)
T 1xku_A 296 SGVSLFSNPVQY 307 (330)
T ss_dssp SEEECCSSSSCG
T ss_pred cceEeecCcccc
Confidence 999999999875
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=6.2e-20 Score=146.64 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=116.5
Q ss_pred CCccEEEeCCCCCCC--CChhhhhcccccccEEEccC-CCCCC-CCCCCC-CCCCCCCcc---hhh-chhhhhcCCCccc
Q psy17253 43 NDSISLKIAVSNLND--LPSKTFQELGLQIVNLKLTK-NNLRP-DGAALR-PIDVCAPPS---TLD-NLKNQVQGVTNIF 113 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~~-~~~l~~~~~---~~~-~~~~~~~~l~~L~ 113 (227)
.+++.|++++|.+.. .-+..|..++ .|+.|++++ |.+.+ .+..|. ...+..+.- .+. .++..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 379999999999986 3335688898 999999995 88876 443331 111221111 111 2333455678899
Q ss_pred EEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCC
Q psy17253 114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLS 191 (227)
Q Consensus 114 ~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~ 191 (227)
.|++++|.++. +|..+..+++|++|++++|.+++..+..+..+. +.|+.|++++|.++ .+|..+..+. |+.|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC--TTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh--hcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999884 688888899999999999998866666665554 13777788777776 4445454444 6666666
Q ss_pred CCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 192 HNKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 192 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+|++....+..+..+++|+.|++++|.++.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 666665555555555555555555555543
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.2e-18 Score=136.53 Aligned_cols=156 Identities=25% Similarity=0.339 Sum_probs=135.3
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
+++.|+++++.+..++. +..++ +|+.|++++|.+...+ .+..+++|++|++++|.++
T Consensus 42 ~L~~L~l~~~~i~~~~~--l~~l~-~L~~L~l~~n~l~~~~--------------------~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQG--IQYLP-NVRYLALGGNKLHDIS--------------------ALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp TCCEEECTTSCCCCCTT--GGGCT-TCCEEECTTSCCCCCG--------------------GGTTCTTCCEEECTTSCCC
T ss_pred ceeeeeeCCCCcccccc--cccCC-CCcEEECCCCCCCCch--------------------hhcCCCCCCEEECCCCccC
Confidence 79999999999998875 77787 9999999999987411 1224689999999999999
Q ss_pred cccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCcc
Q psy17253 124 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 124 ~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
.++. .+..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+.
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC---CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 9854 5788999999999999999888776666666 9999999999998874 468899999999999999999888
Q ss_pred ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.++.+++|+.|++++|.++++|+.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HhcCCccCCEEECCCCcCCccCHH
Confidence 899999999999999999999874
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=135.60 Aligned_cols=150 Identities=23% Similarity=0.457 Sum_probs=129.9
Q ss_pred ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
-+.++++++.++.+|.... ..++.|++++|.+.. ++ ..| .++++|+.|++++|.+
T Consensus 13 ~~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~-------------------~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIF-------------------KKLPQLRKINFSNNKI 69 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCG-------------------GGCTTCCEEECCSSCC
T ss_pred CCEeEeCCCCcccCccCCC----CCCCEEEcCCCcCCccCchhhh-------------------ccCCCCCEEECCCCcC
Confidence 4589999999999987432 268899999999987 33 233 2368999999999999
Q ss_pred cccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCc
Q psy17253 123 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISP 200 (227)
Q Consensus 123 ~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~ 200 (227)
+.++ ..|..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.+
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS---CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC---CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 9985 48999999999999999999988777776666 999999999999884 678889999999999999999989
Q ss_pred cccCCCCCCCEEEcCCCcCc
Q psy17253 201 DDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~ 220 (227)
..|..+++|+.|++++|+++
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEE
T ss_pred HHhcCCCCCCEEEecCcCCc
Confidence 99999999999999999875
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=2.4e-19 Score=142.55 Aligned_cols=115 Identities=27% Similarity=0.394 Sum_probs=101.1
Q ss_pred hhcCCCcccEEEccCCCccc--ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcC
Q psy17253 105 QVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMG 181 (227)
Q Consensus 105 ~~~~l~~L~~L~l~~n~l~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~ 181 (227)
.+.++++|+.|++++|.++. +|..+..+++|+.|++++|.++...+..+..+++ |+.|++++|.++.++ ..+..
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS---LQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT---CCEEECTTSCCSBCCSGGGTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC---CCEEECCCCccCccChhhccC
Confidence 34568999999999999986 6888999999999999999999988777766665 999999999999886 46788
Q ss_pred CCCCCEEeCCCCccccCCccccCCCC-CCCEEEcCCCcCccc
Q psy17253 182 IHGLSRLDLSHNKLRTISPDDFIGLD-SLKMLDISHNLLTTL 222 (227)
Q Consensus 182 ~~~L~~l~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~l 222 (227)
+++|+.|++++|++....+..+..++ +|+.|++++|+++.-
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 89999999999999998888888884 899999999998653
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=7.8e-19 Score=141.18 Aligned_cols=174 Identities=24% Similarity=0.339 Sum_probs=107.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhc--hhhhhcCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDN--LKNQVQGV 109 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~--~~~~~~~l 109 (227)
++++|++++|.+..+|. .+..++ +|+.|++++|.+.. +.... .++.+..+|..+.. +...+.++
T Consensus 105 ~L~~L~L~~n~l~~lp~-~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLMELPD-TMQQFA-GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCCCCCS-CGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCccchhH-HHhccC-CCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 68888888888887764 466676 78888888888776 43322 11233344443321 01112235
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEE
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRL 188 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l 188 (227)
++|+.|++++|.++.+|..+..+++|+.|++++|.++++++ .+..++ +|+.|++++|.+. .+|..+..+++|+.|
T Consensus 183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~---~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLP---KLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCT---TCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCC---CCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 67777777777777666667777777777777777765543 233333 3777777776544 445556666777777
Q ss_pred eCCCCccccCCccccCCCCCCCEEEcCCCc-CcccC
Q psy17253 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLE 223 (227)
Q Consensus 189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp 223 (227)
++++|.+....|..+..+++|+.|++++|. +..+|
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 777766655556666677777777777755 34444
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=6.9e-19 Score=144.51 Aligned_cols=64 Identities=31% Similarity=0.438 Sum_probs=38.0
Q ss_pred CcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 160 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 160 ~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|.++++|+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCc
Confidence 4466666666666654 34555666666666666666655 3344555666666666666655553
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=1.8e-18 Score=142.08 Aligned_cols=174 Identities=24% Similarity=0.319 Sum_probs=94.1
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVTN 111 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~ 111 (227)
++++|++++|.+..++...|..++ +|+.|++++|.+.. ++..| ..+.+..+|.. .+.++++
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~------~~~~l~~ 142 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG------IFHNTPK 142 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTT
T ss_pred cCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH------HhcCCCC
Confidence 355555555555555444455554 55555555555544 33332 22222222221 1223455
Q ss_pred ccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCC--------------------------------
Q psy17253 112 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS-------------------------------- 158 (227)
Q Consensus 112 L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------------------- 158 (227)
|+.|++++|.++.+ +..+..+++|+.|++++|.++..+...+..+..
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 55556655555554 334555555666666655555432222111100
Q ss_pred --CCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 159 --VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 159 --~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.++|+.|++++|.++.. ..+..+++|+.|++++|.+..+.+..+..+++|+.|++++|.++++|..
T Consensus 223 ~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290 (390)
T ss_dssp CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS
T ss_pred cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc
Confidence 01233344444444333 2345667888888888888887778888899999999999998887754
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.5e-18 Score=148.67 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=63.3
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPSTLDNLKNQVQGVTN 111 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~~~~~~~~~~~~l~~ 111 (227)
+|+.|++++|.+..++...|..++ +|+.|++++|.+.. ++..| +.|.+..+|..+ +..+++
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------~~~l~~ 148 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI------FHNTPK 148 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTT
T ss_pred CCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH------hccCCC
Confidence 577777777777777666676666 77777777777766 55444 333333333321 234567
Q ss_pred ccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccC
Q psy17253 112 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS 149 (227)
Q Consensus 112 L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~ 149 (227)
|+.|++++|.++.+ |..|..+++|+.|++++|.++..+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 77777777777765 445677777777777777766543
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=9.7e-19 Score=147.22 Aligned_cols=193 Identities=19% Similarity=0.245 Sum_probs=149.0
Q ss_pred CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-CCCCCCcch---hh
Q psy17253 28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-IDVCAPPST---LD 100 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~~~---~~ 100 (227)
.+.+++....+..|.. +|++|++++|.+..+.+.+|..++ +|+.|++++|.+.. +...|.. ..+..+.-+ +.
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 3455666666777766 899999999999999888899998 99999999999998 7766632 112221111 11
Q ss_pred c-hhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-h
Q psy17253 101 N-LKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-G 177 (227)
Q Consensus 101 ~-~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~ 177 (227)
. .+..+.++++|+.|++++|.++.+ +..|..+++|+.|++++|.++.++...+..+++ |+.|++++|.+..++ .
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG---LIVLRLRHLNINAIRDY 194 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT---CCEEEEESCCCCEECTT
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC---CcEEeCCCCcCcEeChh
Confidence 1 123345678999999999999987 668899999999999999998877655655655 999999999999876 5
Q ss_pred hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.+..+.+|+.|++++|......+.......+|+.|++++|.++++|.
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 67889999999999987544334344445589999999999999884
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=2.8e-18 Score=143.42 Aligned_cols=113 Identities=27% Similarity=0.472 Sum_probs=80.4
Q ss_pred CcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCE
Q psy17253 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSR 187 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~ 187 (227)
++|+.|++++|.++.+ |..+..+++|+.|++++|.+....+..+..+++ |+.|++++|.++.++ ..+..+++|+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH---LLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT---CCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc---CCEEECCCCccCCcChhHhcCcccCCE
Confidence 3566666666666654 556677777888888888777776666655555 777777777777663 55667777777
Q ss_pred EeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
|++++|+++.+.+..+..+++|+.|++++|.++++|+.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 77777777777677777777777777777777777763
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-18 Score=150.56 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=42.4
Q ss_pred ccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253 30 FGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL 87 (227)
Q Consensus 30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~ 87 (227)
.+.+....+..|.. +|+.|++++|.+..+++..|..++ +|+.|++++|.+.. +...|
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHh
Confidence 34444444545555 788888888888888888888887 88888888888888 66654
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.8e-18 Score=140.83 Aligned_cols=155 Identities=29% Similarity=0.331 Sum_probs=132.9
Q ss_pred ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
-+.++++++.+..+|.... ..++.|++++|.+.. +...|.. ++++|+.|++++|.|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~----~~l~~L~Ls~N~l~~l~~~~~~~------------------~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPT------------------RLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC----TTCSEEECCSSCCCEECTTSSSS------------------CCTTCCEEECCSSCCC
T ss_pred CCEEEeCCCCcCccCccCC----CCCCEEECCCCCCCccChhhhhh------------------cccccCEEECCCCcCC
Confidence 3689999999999997532 268899999999988 6665531 2588999999999999
Q ss_pred ccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 124 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 124 ~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
.++ ..|..+++|+.|+|++|.++.+++..+..+.+ |+.|++++|.++.++ ..+..+.+|+.|++++|+++.++..
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA---LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT---CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC---CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 985 57899999999999999999998877777766 999999999999885 6788999999999999999999777
Q ss_pred cc---CCCCCCCEEEcCCCcCcccCC
Q psy17253 202 DF---IGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 202 ~~---~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.| ..+++|+.|++++|.++.+|.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCH
T ss_pred HhcCcccCCcCCEEECCCCCCCccCH
Confidence 77 568999999999999999884
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=2.3e-18 Score=150.79 Aligned_cols=192 Identities=23% Similarity=0.343 Sum_probs=131.5
Q ss_pred chhhcccCCCCC--CccEEEeCCCCCC-CCChhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcc------hhh
Q psy17253 32 QVVDALQDRFGN--DSISLKIAVSNLN-DLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPS------TLD 100 (227)
Q Consensus 32 ~~~~~~~~~~~~--~l~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~------~~~ 100 (227)
++....+..+.. +++.|++++|.+. .++...|..++ +|+.|++++|.+.. +...|... .+..+.- .+.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 344444444443 5666666666665 35555566665 66666666666655 44333210 0000000 112
Q ss_pred chhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCC-----CCCCCCcccEEEcCCCCCcC
Q psy17253 101 NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI-----GLDSVTNIFELKLQHNEIEN 174 (227)
Q Consensus 101 ~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~~ 174 (227)
..+..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+....+. .+..+++|+.|++++|.++.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 23334456788999999999999874 4678889999999999998876433211 13344559999999999998
Q ss_pred chh-hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 175 LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 175 ~~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+|. .+..+++|+.|++++|+++.+++..|..+++|+.|++++|.++++++
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 884 57888999999999999999988888999999999999999998875
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=1.4e-18 Score=154.35 Aligned_cols=86 Identities=33% Similarity=0.454 Sum_probs=47.5
Q ss_pred CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCE
Q psy17253 133 HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 211 (227)
Q Consensus 133 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 211 (227)
.+|+.|++++|.+++..+..++.++. |+.|++++|.++ .+|..++.+++|+.|++++|++++..|..++.++.|+.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~---L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPY---LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTT---CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccccEEECcCCcccccCCHHHhcccc---CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 34445555555554444444433333 555666666655 45555555666666666666666555556666666666
Q ss_pred EEcCCCcCcc
Q psy17253 212 LDISHNLLTT 221 (227)
Q Consensus 212 L~l~~n~l~~ 221 (227)
|++++|++++
T Consensus 709 L~ls~N~l~g 718 (768)
T 3rgz_A 709 IDLSNNNLSG 718 (768)
T ss_dssp EECCSSEEEE
T ss_pred EECcCCcccc
Confidence 6666666543
No 51
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.79 E-value=2.8e-18 Score=152.32 Aligned_cols=172 Identities=22% Similarity=0.252 Sum_probs=116.8
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC-CCcchhhchhhhhcCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC-APPSTLDNLKNQVQGVT 110 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~-~~~~~~~~~~~~~~~l~ 110 (227)
+++.|++++|.+....+..+..++ +|+.|++++|.+.+ .+..+ +.|.+. .+|. .+..++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-------~~~~l~ 514 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-------WIGRLE 514 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCT
T ss_pred CCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-------HHhcCC
Confidence 455555555555543333444554 55555555555554 22222 222222 2222 233457
Q ss_pred cccEEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCCCCCCC----------------------------------
Q psy17253 111 NIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIG---------------------------------- 155 (227)
Q Consensus 111 ~L~~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 155 (227)
+|+.|++++|.+++ +|..+..+++|+.|++++|.+.+..|..+..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 88888888888875 5778888888888888888776433322211
Q ss_pred ---------------------------------CCCCCcccEEEcCCCCCc-CchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 156 ---------------------------------LDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 156 ---------------------------------~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
+..+++|+.|++++|+++ .+|..++.++.|+.|++++|++++..|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 122356889999999988 6788889999999999999999987799
Q ss_pred ccCCCCCCCEEEcCCCcCcccC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp 223 (227)
.++.++.|+.||+++|.+++..
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECC
T ss_pred HHhCCCCCCEEECCCCcccCcC
Confidence 9999999999999999998443
No 52
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=8.7e-18 Score=126.36 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=129.7
Q ss_pred ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
-+.++.+++.+..+|... .. +++.|++++|.+.. +...|. ++++|+.|++++|.++
T Consensus 9 ~~~v~c~~~~l~~~p~~~---~~-~l~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI---PA-QTTYLDLETNSLKSLPNGVFD-------------------ELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTEEECCSSCCSSCCSCC---CT-TCSEEECCSSCCCCCCTTTTT-------------------TCTTCSEEECCSSCCC
T ss_pred CCEEEecCCCccCCCCCC---CC-CCcEEEcCCCccCcCChhhhc-------------------ccccCcEEECCCCccC
Confidence 367899999999998653 23 89999999999987 555543 3588999999999999
Q ss_pred cccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCCcc
Q psy17253 124 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 124 ~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
.++. .|..+++|++|++++|.++.+++..+..+++ |+.|++++|.++.++. .+..+++|+.|++++|+++.+.+.
T Consensus 66 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ---LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC---CCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 9855 5688999999999999999887766666655 9999999999998874 468899999999999999999888
Q ss_pred ccCCCCCCCEEEcCCCcCcccC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp 223 (227)
.+..+++|+.|++++|++..-.
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCCCT
T ss_pred HhccCCCccEEEecCCCeecCC
Confidence 8999999999999999876543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=143.11 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=86.2
Q ss_pred CccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCC
Q psy17253 29 SFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCA 94 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~ 94 (227)
+.+.+....+..+.. +++.|++++|.+..++..+|..++ +|+.|++++|.++. +...| +.|.+..
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence 334455544445554 788888888888877777777776 78888888888776 54322 3344444
Q ss_pred CcchhhchhhhhcCCCcccEEEccCC-Ccccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCC
Q psy17253 95 PPSTLDNLKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172 (227)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~ 172 (227)
+|.. ..+..+++|+.|++++| .++.+ +..+..+++|+.|++++|.+....+..+..+++ |+.|++++|.+
T Consensus 139 l~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l 210 (353)
T 2z80_A 139 LGET-----SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN---VSHLILHMKQH 210 (353)
T ss_dssp SCSS-----CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE---EEEEEEECSCS
T ss_pred cCch-----hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc---CCeecCCCCcc
Confidence 3330 12334567777777777 46665 456677777777777777777766655554443 55555555555
Q ss_pred cCch
Q psy17253 173 ENLD 176 (227)
Q Consensus 173 ~~~~ 176 (227)
..++
T Consensus 211 ~~~~ 214 (353)
T 2z80_A 211 ILLL 214 (353)
T ss_dssp TTHH
T ss_pred ccch
Confidence 4443
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=4.1e-18 Score=147.30 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=43.7
Q ss_pred CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC
Q psy17253 28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL 87 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~ 87 (227)
.+.+.+....+..|.. ++++|++++|.+..+.+.+|..++ +|+.|++++|.+.. .+..|
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTT
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhh
Confidence 3455666666666665 788888888888888777788887 88888888888877 55444
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.9e-18 Score=137.81 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=128.4
Q ss_pred CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCc
Q psy17253 43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTN 111 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~ 111 (227)
.+++.|++++|.+..+|.. +..++ +|+.|++++|.+.. +.... +.|.+..+|..+ ..+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-------~~l~~ 151 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-------ASLNR 151 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-------GGCTT
T ss_pred cceeEEEccCCCchhcChh-hhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-------hcCcC
Confidence 4799999999999999976 45587 99999999999987 54322 444455555443 34578
Q ss_pred ccEEEccCCCcc-ccccccc---------CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcC
Q psy17253 112 IFELKLQHNEIE-NLDGALM---------GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMG 181 (227)
Q Consensus 112 L~~L~l~~n~l~-~l~~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 181 (227)
|+.|++++|.+. .+|..+. .+++|+.|++++|.++.++ ..+..++ +|+.|++++|.++.+|..+..
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~---~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQ---NLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCT---TCCEEEEESSCCCCCCGGGGG
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCC---CCCEEEccCCCCCcCchhhcc
Confidence 888888886544 4565544 3888888888888887553 3444444 489999999999888877888
Q ss_pred CCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc-CcccCC
Q psy17253 182 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEE 224 (227)
Q Consensus 182 ~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~lp~ 224 (227)
+++|+.|++++|.+....+..++.+++|+.|++++|. +..+|.
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 8999999999988877778888999999999999976 444443
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=5.6e-18 Score=135.20 Aligned_cols=170 Identities=20% Similarity=0.160 Sum_probs=128.8
Q ss_pred CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCC-CCCCCCC-CCCCCCcchhhc------hhhhh--cC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRP-DGAALRP-IDVCAPPSTLDN------LKNQV--QG 108 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~~~~~~------~~~~~--~~ 108 (227)
++++|++++|.+..+| ..+..+ + +|+.|++++|++.. ++..|.. ..+..+.-+-.. ....+ ..
T Consensus 122 ~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATRD-AWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSSS-SHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCCCcchh-HHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 7999999999999885 556666 6 89999999999988 6555532 122222211111 11222 57
Q ss_pred CCcccEEEccCCCccccc----ccccCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCcccEEEcCCCCCcCchhhhcCCC
Q psy17253 109 VTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIENLDGALMGIH 183 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l~----~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 183 (227)
+++|+.|++++|.++.++ ..+..+++|+.|++++|.+++..+ ..+..+ ++|+.|++++|.++.+|..+. +
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l---~~L~~L~Ls~N~l~~ip~~~~--~ 274 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP---SQLNSLNLSFTGLKQVPKGLP--A 274 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC---TTCCEEECTTSCCSSCCSSCC--S
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc---CCCCEEECCCCccChhhhhcc--C
Confidence 899999999999998543 334577899999999999988653 233334 459999999999998887665 7
Q ss_pred CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
+|+.|++++|+++++ |. +..+++|+.|++++|++++.
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 899999999999998 54 88999999999999999864
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2e-17 Score=142.03 Aligned_cols=111 Identities=17% Similarity=0.262 Sum_probs=81.0
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------C
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------R 88 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~ 88 (227)
.+.|.. +++.. +|..++.+++.|++++|.+..++...|..++ +|+.|++++|.++. ++..| +
T Consensus 35 ~l~ls~----~~L~~-ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 35 MVDYSN----RNLTH-VPKDLPPRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp EEECTT----SCCCS-CCTTSCTTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred EEEcCC----CCCcc-CCCCCCCCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 577755 24433 5555667899999999999999998999998 99999999999998 77666 4
Q ss_pred CCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccc--cccccCCCCCCEEEcCCCcCc
Q psy17253 89 PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLR 146 (227)
Q Consensus 89 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~l~ 146 (227)
.|.+..+|.. .+++|+.|++++|.++.+ |..|..+++|+.|++++|.+.
T Consensus 109 ~N~l~~lp~~---------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 109 HNRLQNISCC---------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TSCCCEECSC---------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCcCCccCcc---------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 4445444432 356777777777777765 356777777777777766554
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.2e-17 Score=133.05 Aligned_cols=161 Identities=22% Similarity=0.408 Sum_probs=102.5
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCC----------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+...+... +.+.+..++. +..+++|+
T Consensus 64 ~L~~L~L~~n~i~~~~~--~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~ 132 (308)
T 1h6u_A 64 NLIGLELKDNQITDLAP--LKNLT-KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--------LAGLSNLQ 132 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCC-SCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--------GTTCTTCC
T ss_pred CCCEEEccCCcCCCChh--HccCC-CCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--------hcCCCCCC
Confidence 67778888777777766 66776 7778888877776511111 2222322221 33456677
Q ss_pred EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 193 (227)
.|++++|.++.++. +..+++|+.|++++|.++.+++ +..++ +|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 133 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~---~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 133 VLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLS---KLTTLKADDNKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT---TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred EEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCC---CCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence 77777777766654 6666777777777777665443 33333 37777777777766654 566677777777777
Q ss_pred ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++..+. .+..+++|+.|++++|+++..|.
T Consensus 206 ~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 206 QISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 777663 26667777777777777766553
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=4.7e-18 Score=147.14 Aligned_cols=154 Identities=27% Similarity=0.425 Sum_probs=133.6
Q ss_pred cEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc
Q psy17253 46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN 124 (227)
Q Consensus 46 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 124 (227)
.+++-++-+++++|.+ ++..++.|++++|.+++ ++..|. ++++|++|+|++|.|+.
T Consensus 34 ~~~~c~~~~l~~vP~~----lp~~~~~LdLs~N~i~~l~~~~f~-------------------~l~~L~~L~Ls~N~i~~ 90 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDN----LPFSTKNLDLSFNPLRHLGSYSFF-------------------SFPELQVLDLSRCEIQT 90 (635)
T ss_dssp TEEECTTSCCSSCCSS----SCTTCCEEECTTSCCCEECTTTTT-------------------TCTTCCEEECTTCCCCE
T ss_pred CEEECCCCCcCccCCC----CCcCCCEEEeeCCCCCCCCHHHHh-------------------CCCCCCEEECCCCcCCC
Confidence 4667777789999964 33489999999999998 777765 36899999999999999
Q ss_pred c-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeCCCCccccCC-cc
Q psy17253 125 L-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTIS-PD 201 (227)
Q Consensus 125 l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~l~~~~-~~ 201 (227)
+ +++|..+++|++|+|++|+++.++++.|.++.+ |++|++++|+++.++. .+..+++|+.|++++|.++.+. +.
T Consensus 91 i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~---L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 91 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT---CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC---CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 8 557899999999999999999998887777776 9999999999999874 5789999999999999998764 67
Q ss_pred ccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 202 DFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.++.++.|+.|++++|.++++++.
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGG
T ss_pred hhccchhhhhhcccCccccccccc
Confidence 788999999999999999988754
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=8.4e-19 Score=148.11 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=24.1
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
+++.|++++|.+..+++..|..++ +|+.|++++|.+..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 72 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYE 72 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCC
Confidence 466666666666666666666665 66666666666654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.1e-18 Score=139.64 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=86.4
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcch---------------
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPST--------------- 98 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~--------------- 98 (227)
++++|++++|.+..++...|..++ +|+.|++++|.+.. ++ ..+ +.|.+..++..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~ 113 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSE
T ss_pred CCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCC
Confidence 688888888888888877788887 88888888888765 22 000 22222221100
Q ss_pred ------------------hhch-hhhhcCCCcccEEEccCCCcccc-cccc-cCCCCCCEEEcCCCcCcccCCCCCCCCC
Q psy17253 99 ------------------LDNL-KNQVQGVTNIFELKLQHNEIENL-DGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLD 157 (227)
Q Consensus 99 ------------------~~~~-~~~~~~l~~L~~L~l~~n~l~~l-~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 157 (227)
+..+ +..+..+++|+.|++++|.++.+ +..+ ..+++|+.|++++|.++.++...
T Consensus 114 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----- 188 (317)
T 3o53_A 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----- 188 (317)
T ss_dssp EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----
T ss_pred cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-----
Confidence 0000 00112234444444444444443 2222 23444555555555544442111
Q ss_pred CCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 158 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
.+++|+.|++++|.++.++..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCB
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCcc
Confidence 12335555555555555554455555555555555555554 334555555555555555554
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=6.1e-18 Score=126.23 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=123.5
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
+++.|++++|.+..++ .+..++ +|+.|++++|.+...+ .+..+++|+.|++++|.++
T Consensus 45 ~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~l~~n~~~~~~--------------------~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 45 SLTYITLANINVTDLT--GIEYAH-NIKDLTINNIHATNYN--------------------PISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp TCCEEEEESSCCSCCT--TGGGCT-TCSEEEEESCCCSCCG--------------------GGTTCTTCCEEEEECTTCB
T ss_pred CccEEeccCCCccChH--HHhcCC-CCCEEEccCCCCCcch--------------------hhhcCCCCCEEEeECCccC
Confidence 6999999999999988 488887 9999999999765311 1224689999999999999
Q ss_pred c-ccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC-CcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 124 N-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 124 ~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
. .+..+..+++|+.|++++|.++...+..+..+++ |+.|++++|. ++.++ .+..+++|+.|++++|+++.+.
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~---L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK---VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSS---CCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCC---CCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--
Confidence 7 5778999999999999999998755555555555 9999999998 88887 5788999999999999999874
Q ss_pred ccCCCCCCCEEEcCCCcCcc
Q psy17253 202 DFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~~ 221 (227)
.+..+++|+.|++++|++.+
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 68889999999999999864
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=3.7e-18 Score=131.08 Aligned_cols=172 Identities=22% Similarity=0.338 Sum_probs=136.4
Q ss_pred cchhhcccCCCCC--CccEEEeCCCC-CCCCChhhhhcccccccEEEccC-CCCCC-CCCCC-----------CCCCCCC
Q psy17253 31 GQVVDALQDRFGN--DSISLKIAVSN-LNDLPSKTFQELGLQIVNLKLTK-NNLRP-DGAAL-----------RPIDVCA 94 (227)
Q Consensus 31 ~~~~~~~~~~~~~--~l~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~-n~~~~-~~~~~-----------~~~~l~~ 94 (227)
+++....+..|.. +++.|++++|. +..++..+|..++ +|+.|++++ |.+.. +...| ..+.+..
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc
Confidence 4555555556655 89999999997 9999998899998 999999998 99998 76666 2333433
Q ss_pred CcchhhchhhhhcCCCccc---EEEccCC-Ccccccc-cccCCCCCC-EEEcCCCcCcccCCCCCCCCCCCCcccEEEcC
Q psy17253 95 PPSTLDNLKNQVQGVTNIF---ELKLQHN-EIENLDG-ALMGIHGLS-RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168 (227)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~l~~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~ 168 (227)
+|. +..+++|+ .|++++| .++.++. .|..+++|+ .|++++|.++.++...+.. . +|+.|+++
T Consensus 120 lp~--------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~---~L~~L~L~ 187 (239)
T 2xwt_C 120 FPD--------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T---KLDAVYLN 187 (239)
T ss_dssp CCC--------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C---EEEEEECT
T ss_pred ccc--------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C---CCCEEEcC
Confidence 332 33456676 9999999 9999854 688899999 9999999999887765544 3 49999999
Q ss_pred CCC-CcCch-hhhcCC-CCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253 169 HNE-IENLD-GALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 169 ~n~-~~~~~-~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 218 (227)
+|+ ++.++ ..+..+ ++|+.|++++|+++.+++. .+++|+.|++.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 995 99886 567788 8999999999999988654 56778899988763
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=2.6e-18 Score=146.85 Aligned_cols=177 Identities=17% Similarity=0.234 Sum_probs=98.8
Q ss_pred cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-----------CCCCCCcchhhchh
Q psy17253 36 ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-----------IDVCAPPSTLDNLK 103 (227)
Q Consensus 36 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-----------~~l~~~~~~~~~~~ 103 (227)
.+|..+..++++|++++|.+..+++..|..++ +|+.|++++|++.. ++..|.. +.+..++.
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 91 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS------ 91 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH------
T ss_pred cccccCCCCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH------
Confidence 34445556899999999999988888899998 99999999999988 6655532 11111111
Q ss_pred hhhcCCCcccEEEccCCCcccc--cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhh
Q psy17253 104 NQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGAL 179 (227)
Q Consensus 104 ~~~~~l~~L~~L~l~~n~l~~l--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~ 179 (227)
..+.++++|+.|++++|.++.+ |..+..+++|+.|++++|. +..+++..+..+++ |+.|++++|.++. .|..+
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~---L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS---LNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE---EEEEEEEETTCCEECTTTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc---cCeeeccCCcccccChhhh
Confidence 1122334455555555544432 3344444445555554444 33333233333222 5555555555443 23344
Q ss_pred cCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
..+.+|+.|++++|.+..+....+..+++|+.|++++|.++++
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 4444555555555544443222234467777888888877765
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=2.5e-18 Score=149.62 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=133.7
Q ss_pred CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCC----------------------------------
Q psy17253 43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALR---------------------------------- 88 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---------------------------------- 88 (227)
++++.|+++++++....+..+..++ .|+.|++++|.+......+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcCc-cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 3699999999999855446789998 99999999997622000010
Q ss_pred -------------------------CCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc------------------c
Q psy17253 89 -------------------------PIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN------------------L 125 (227)
Q Consensus 89 -------------------------~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------l 125 (227)
...+...-..+..++..++.+++|++|++++|.+++ +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 000000001223355556677999999999999998 8
Q ss_pred ccccc--CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC-CcC--chhhhcCC------CCCCEEeCCCCc
Q psy17253 126 DGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE-IEN--LDGALMGI------HGLSRLDLSHNK 194 (227)
Q Consensus 126 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~--~~~~~~~~------~~L~~l~l~~n~ 194 (227)
|..+. .+++|++|++++|.+.+..+..+..+++ |+.|++++|. ++. +|..+..+ ++|+.|++++|+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE---MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS---CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCC---CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 99888 9999999999999988877777766665 9999999998 874 77666655 889999999999
Q ss_pred cccCCcc--ccCCCCCCCEEEcCCCcCc-ccC
Q psy17253 195 LRTISPD--DFIGLDSLKMLDISHNLLT-TLE 223 (227)
Q Consensus 195 l~~~~~~--~~~~~~~L~~L~l~~n~l~-~lp 223 (227)
++.+ |. .++.+++|+.|++++|.++ .+|
T Consensus 317 l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 317 LKTF-PVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CSSC-CCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCcc-CchhhhccCCCCCEEeCcCCcCccchh
Confidence 9866 55 7888999999999999988 777
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=7e-18 Score=134.49 Aligned_cols=173 Identities=19% Similarity=0.134 Sum_probs=123.0
Q ss_pred CccEEEeCCCCCCCCC----hhhhhcccccccEEEccCCCCCC-CCCCCCCC-CCCCCcchhhc------hh--hhhcCC
Q psy17253 44 DSISLKIAVSNLNDLP----SKTFQELGLQIVNLKLTKNNLRP-DGAALRPI-DVCAPPSTLDN------LK--NQVQGV 109 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~~~~~~~~------~~--~~~~~l 109 (227)
++++|++++|.+.... ...+..++ +|+.|++++|.+.. ++..|... .+..+.-+-.. ++ ..+..+
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 6777888888777532 23344555 77888888887776 55554221 12221111110 11 112357
Q ss_pred CcccEEEccCCCcccccc----cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC
Q psy17253 110 TNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL 185 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L 185 (227)
++|+.|++++|.++.++. .+..+++|+.|++++|.++...+..+..+..+++|+.|++++|.++.+|..+. ++|
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L 274 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKL 274 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCC
Confidence 899999999999987654 24678999999999999998866666666544569999999999998886553 789
Q ss_pred CEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+.|++++|+++.+ + .+..++.|+.|++++|+++.
T Consensus 275 ~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence 9999999999987 3 26788999999999999875
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=6.2e-18 Score=150.99 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=138.0
Q ss_pred cchhhcccCCCCC--CccEEEeCCCCCCC------------------CChhh-hhcccccccEEEccCCCCCC-CCCCC-
Q psy17253 31 GQVVDALQDRFGN--DSISLKIAVSNLND------------------LPSKT-FQELGLQIVNLKLTKNNLRP-DGAAL- 87 (227)
Q Consensus 31 ~~~~~~~~~~~~~--~l~~L~l~~~~l~~------------------~~~~~-~~~~~~~L~~L~l~~n~~~~-~~~~~- 87 (227)
+++.. +|..+.. +|+.|++++|.+.. +|... |..++ +|+.|++++|.+.+ .+..|
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCCccChHHHh
Confidence 34444 5665655 89999999999998 77653 44887 99999999999877 44433
Q ss_pred ----------CCCC-CC--CCcchhhchhhhhcCCCcccEEEccCCCcccccc--cccCCCCCCEEEcCCCcCcccCCCC
Q psy17253 88 ----------RPID-VC--APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDD 152 (227)
Q Consensus 88 ----------~~~~-l~--~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 152 (227)
+.|. +. .+|..+..+...+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++.++ .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--C
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--h
Confidence 3443 43 2555555554344456799999999999999988 8999999999999999998554 4
Q ss_pred CCCCCCCCcccEEEcCCCCCcCchhhhcCCCC-CCEEeCCCCccccCCccccCCCCC--CCEEEcCCCcCccc
Q psy17253 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHG-LSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLTTL 222 (227)
Q Consensus 153 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~-L~~l~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~l 222 (227)
+..+ ++|+.|++++|.+..+|..+..+++ |+.|++++|++..+ |..+..+.. |+.|++++|.+++.
T Consensus 591 ~~~L---~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 591 FGTN---VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCTT---SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hcCC---CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCEEECcCCcCCCc
Confidence 5444 4499999999999988877888888 99999999998866 555555533 77777777776554
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=3.4e-17 Score=139.12 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=117.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC-CCCCCCc------chhhchhhhhcCCCcccEE
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP-IDVCAPP------STLDNLKNQVQGVTNIFEL 115 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~-~~l~~~~------~~~~~~~~~~~~l~~L~~L 115 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.+ .+..+.. ..+..+. ..+..++..+..+++|+.|
T Consensus 303 ~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC--PSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCSEEEEESSCCCCCCC--CSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred ceeEEEcCCCccccccc--hhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 35666666666554432 13343 56666666666655 3222211 0111110 0222344456678899999
Q ss_pred EccCCCccc-ccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253 116 KLQHNEIEN-LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 116 ~l~~n~l~~-l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 193 (227)
++++|.++. +|. .+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++.+|..+..+++|+.|++++|
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-----PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-----TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-----ccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 999999988 765 477788999999999998765544332 3499999999999999877778999999999999
Q ss_pred ccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 194 KLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+++.+++..+..+++|+.|++++|+++.
T Consensus 455 ~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 9998866668899999999999998763
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=7e-18 Score=134.62 Aligned_cols=166 Identities=19% Similarity=0.132 Sum_probs=106.9
Q ss_pred CccEEEeCCCCCCC-CChhhh-hcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVSNLND-LPSKTF-QELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~~l~~-~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
++++|++++|.+.. +|...| ..++ +|+.|++++|.+.+. |..+..+... .+++|++|++++|.
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~------------~~~~~~l~~~--~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATR------------DAWLAELQQW--LKPGLKVLSIAQAH 160 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSC-CCSEEEEESCBCSSS------------SSHHHHHHTT--CCTTCCEEEEESCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCC-CccEEEccCCCCcch------------hHHHHHHHHh--hcCCCcEEEeeCCC
Confidence 79999999999984 565543 7777 999999999998751 1112111100 12677777888777
Q ss_pred ccccc-ccccCCCCCCEEEcCCCcCcccC--CCCCCCCCCCCcccEEEcCCCCCcCch----hhhcCCCCCCEEeCCCCc
Q psy17253 122 IENLD-GALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSVTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNK 194 (227)
Q Consensus 122 l~~l~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~L~~l~l~~n~ 194 (227)
++.++ ..+..+++|+.|++++|.+.+.. +..+ ....+++|+.|++++|.++.++ ..+..+++|+.|++++|+
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL-CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHH-HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 77764 66777777788887777754321 0011 0122334777777777777443 222456777777777777
Q ss_pred cccCCc-cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 195 LRTISP-DDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 195 l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
+....+ ..+..+++|+.|++++|.++++|..
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred CCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 776543 3455567777777777777777654
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=4.2e-17 Score=141.96 Aligned_cols=161 Identities=16% Similarity=0.293 Sum_probs=116.3
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+++.|++++|.+..+|...+..++ +|+.|++++|.+.. +...|... ......+++|+.|++++|.+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~~------------~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLTEIPKNSLKDE------------NENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCSBCCSSSSEET------------TEECTTGGGCCEEECCSSCC
T ss_pred CCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCCCcCHHHhccc------------cccccccCCccEEECcCCcC
Confidence 566777777777777766666665 67777777777665 44443210 00011234899999999999
Q ss_pred cccccccc--CCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcC------CCCCc-CchhhhcCCCCCCEEeCCCC
Q psy17253 123 ENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ------HNEIE-NLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 123 ~~l~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~------~n~~~-~~~~~~~~~~~L~~l~l~~n 193 (227)
+.+|..+. .+++|+.|++++|.++++ +..+..+++ |+.|+++ +|.+. .+|..+..+++|+.|++++|
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l~~---L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSST---LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCSS---CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CccChhhhhccCCCcCEEECCCCCCCCc-ChhhhcCCC---CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 98888887 889999999999999884 445555544 9999995 45544 66777888999999999999
Q ss_pred ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++..++ ..+. +.|+.|++++|++..++.
T Consensus 577 ~l~~ip-~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 577 DIRKVN-EKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCCBCC-SCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCCccC-HhHh--CcCCEEECcCCCCccccH
Confidence 997774 4344 789999999998887664
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=4.3e-17 Score=129.89 Aligned_cols=160 Identities=23% Similarity=0.374 Sum_probs=128.4
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI 112 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L 112 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.. +. .. +.+.+..++ .+..+++|
T Consensus 42 ~L~~L~l~~~~i~~l~~--~~~l~-~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L 109 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEG--VQYLN-NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--------AIAGLQSI 109 (308)
T ss_dssp TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--------GGTTCTTC
T ss_pred CcCEEEeeCCCccCchh--hhccC-CCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--------hhcCCCCC
Confidence 79999999999999873 78887 99999999999987 43 11 333333332 24457889
Q ss_pred cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253 113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 192 (227)
Q Consensus 113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 192 (227)
+.|++++|.++.++. +..+++|+.|++++|.++.+++ +..+ ++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l---~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGL---TNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGC---TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCC---CCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 999999999888765 7888999999999998887654 4444 449999999999988776 77888999999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
|+++.+.+ +..+++|+.|++++|.++++++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence 99988744 7888999999999999988874
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.2e-17 Score=128.93 Aligned_cols=160 Identities=23% Similarity=0.317 Sum_probs=102.8
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC----------CCCCCCCCcchhhchhhhhcCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL----------RPIDVCAPPSTLDNLKNQVQGVTNI 112 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------~~~~l~~~~~~~~~~~~~~~~l~~L 112 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.. ++ .. +.|.+..++ .+..+++|
T Consensus 47 ~L~~L~l~~~~i~~~~~--~~~l~-~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L 114 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--------SLKDLKKL 114 (291)
T ss_dssp TCCEEECTTSCCCCCTT--GGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--------GGTTCTTC
T ss_pred cccEEEccCCCcccChh--HhcCC-CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh--------hhccCCCC
Confidence 46666666666666543 55555 66666666666654 22 10 111121111 13346778
Q ss_pred cEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCC
Q psy17253 113 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 192 (227)
Q Consensus 113 ~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~ 192 (227)
+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..+..+ ++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l---~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccC---CCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence 88888888777764 466777888888888877765 233333 348888888888777765 67777888888888
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
|.++.+ + .+..+++|+.|++++|+++..|.
T Consensus 188 N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 188 NHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp SCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 888776 2 37778888888888887766553
No 73
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.6e-17 Score=128.30 Aligned_cols=147 Identities=24% Similarity=0.337 Sum_probs=122.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+++.|++++|.+..++ .+..++ +|+.|++++|.+.. ++ +.++++|+.|++++|.+
T Consensus 42 ~L~~L~l~~n~i~~l~--~l~~l~-~L~~L~L~~N~i~~~~~---------------------l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLA--GMQFFT-NLKELHLSHNQISDLSP---------------------LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp TCSEEECTTSCCCCCT--TGGGCT-TCCEEECCSSCCCCCGG---------------------GTTCSSCCEEECCSSCC
T ss_pred cCcEEECcCCCcccch--HHhhCC-CCCEEECCCCccCCChh---------------------hccCCCCCEEECCCCcc
Confidence 6899999999999887 477887 99999999999875 22 22468999999999999
Q ss_pred ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202 (227)
Q Consensus 123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 202 (227)
+.++.... ++|+.|++++|.++.++ .+..++ +|+.|++++|+++.++ .+..+++|+.|++++|+++.+ ..
T Consensus 98 ~~l~~~~~--~~L~~L~L~~N~l~~~~--~l~~l~---~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 98 KNLNGIPS--ACLSRLFLDNNELRDTD--SLIHLK---NLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp SCCTTCCC--SSCCEEECCSSCCSBSG--GGTTCT---TCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred CCcCcccc--CcccEEEccCCccCCCh--hhcCcc---cccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HH
Confidence 99876333 89999999999998764 344444 4999999999999886 578889999999999999988 67
Q ss_pred cCCCCCCCEEEcCCCcCcccCC
Q psy17253 203 FIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+..+++|+.|++++|.++..|.
T Consensus 168 l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp STTCCCCCEEEEEEEEEECCCE
T ss_pred hccCCCCCEEeCCCCcccCCcc
Confidence 8899999999999999887764
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=149.54 Aligned_cols=171 Identities=21% Similarity=0.269 Sum_probs=115.4
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCCCCCCCCCCcch
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAALRPIDVCAPPST 98 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~~~~~ 98 (227)
.+.|... ++ ..+|. .+.+++.|++++|.+..+....|..++ +|+.|++++|.... ++..|.
T Consensus 8 ~~dcs~~----~L-~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~---------- 70 (844)
T 3j0a_A 8 IAFYRFC----NL-TQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFR---------- 70 (844)
T ss_dssp EEEESCC----CS-SCCCS-SCTTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTS----------
T ss_pred EEEccCC----CC-CCCCC-CCCCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhc----------
Confidence 7888652 33 33444 667899999999999999888899998 99999999996543 454443
Q ss_pred hhchhhhhcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCC--CCCCCCCCCcccEEEcCCCCCcCc
Q psy17253 99 LDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD--DFIGLDSVTNIFELKLQHNEIENL 175 (227)
Q Consensus 99 ~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~~l~l~~n~~~~~ 175 (227)
++++|+.|+|++|.++.+ |..|..+++|+.|++++|.+.+..+. .+..++ +|+.|++++|.++.+
T Consensus 71 ---------~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~---~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 71 ---------NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK---ALTRLDLSKNQIRSL 138 (844)
T ss_dssp ---------SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS---SCCEEEEESCCCCCC
T ss_pred ---------CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC---CCCEEECCCCccccc
Confidence 346777777777777765 66777777777777777777653222 233343 377777777777654
Q ss_pred h--hhhcCCCCCCEEeCCCCccccCCccccCCC--CCCCEEEcCCCcCc
Q psy17253 176 D--GALMGIHGLSRLDLSHNKLRTISPDDFIGL--DSLKMLDISHNLLT 220 (227)
Q Consensus 176 ~--~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~ 220 (227)
+ ..+..+++|+.|++++|.++.+.+..+..+ ++|+.|++++|.+.
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 2 456677777777777777766555444443 44444444444443
No 75
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=7e-17 Score=122.57 Aligned_cols=148 Identities=26% Similarity=0.407 Sum_probs=122.7
Q ss_pred ccEEEeCCCCCCCCChhhhhccccccc--EEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIV--NLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~--~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
-+.++.+++.+..+|.. + .-. .|++++|.+.. +...|. ++++|+.|++++|.
T Consensus 13 ~~~v~c~~~~l~~iP~~----l--~~~l~~L~l~~n~i~~i~~~~~~-------------------~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN----L--PETITEIRLEQNTIKVIPPGAFS-------------------PYKKLRRIDLSNNQ 67 (220)
T ss_dssp TTEEECTTSCCSSCCSS----C--CTTCCEEECCSSCCCEECTTSST-------------------TCTTCCEEECCSSC
T ss_pred CCEEEcCCCCcCcCCCc----c--CcCCCEEECCCCcCCCcCHhHhh-------------------CCCCCCEEECCCCc
Confidence 35788888888888752 1 122 26777777776 554443 35789999999999
Q ss_pred cccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC
Q psy17253 122 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS 199 (227)
Q Consensus 122 l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~ 199 (227)
++.+ |..|..+++|++|++++|.++.+++..+..+.+ |+.|++++|.++.++ ..+..+++|+.|++++|+++.+.
T Consensus 68 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 68 ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS---LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC---CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 9987 778999999999999999999888777766666 999999999999875 67788999999999999999998
Q ss_pred ccccCCCCCCCEEEcCCCcCc
Q psy17253 200 PDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 200 ~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+..|..+++|+.|++++|+++
T Consensus 145 ~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 145 KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCEE
T ss_pred HHHHhCCCCCCEEEeCCCCcC
Confidence 888999999999999999874
No 76
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=7.6e-17 Score=119.97 Aligned_cols=108 Identities=26% Similarity=0.396 Sum_probs=94.7
Q ss_pred CcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEE
Q psy17253 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRL 188 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l 188 (227)
++++.|++++|.++.+|..|..+++|+.|++++|.++.+++..|..+.+ |+.|++++|.++.++ ..+..+++|+.|
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~---L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ---LLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC---CCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 4689999999999988888999999999999999999888777776666 999999999999886 567888999999
Q ss_pred eCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 189 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
++++|.++.+.+..|..+++|+.|++++|++.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999987778899999999999999874
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=8.7e-17 Score=138.02 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=110.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
++++|++++|.+.......|..++ +|+.|++++|++.. +..++..+.++++|+.|++++|.++
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~----------------~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKN----------------FFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCB----------------TTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCC----------------cccchhhhcCCCCCCEEECCCCcCC
Confidence 455555555555544334444444 55555555555442 1122233445788999999999988
Q ss_pred c-ccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 124 N-LDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 124 ~-l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
. +|. .+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+++.+++.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-----PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc-----CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 7 654 477788899999999988765443321 348999999999998887677889999999999999988666
Q ss_pred ccCCCCCCCEEEcCCCcCc
Q psy17253 202 DFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 202 ~~~~~~~L~~L~l~~n~l~ 220 (227)
.+..+++|+.|++++|+++
T Consensus 492 ~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp STTTCTTCCCEECCSCCBC
T ss_pred HHhcCCCCCEEEecCCCcC
Confidence 6888999999999999875
No 78
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=7.3e-17 Score=139.46 Aligned_cols=155 Identities=26% Similarity=0.402 Sum_probs=136.0
Q ss_pred ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
-..++.++++++.+|.... . +++.|++++|.+.. ++..|. ++++|+.|++++|.++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~---~-~l~~L~Ls~n~l~~~~~~~~~-------------------~l~~L~~L~Ls~n~l~ 69 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP---S-STKNIDLSFNPLKILKSYSFS-------------------NFSELQWLDLSRCEIE 69 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC---T-TCCEEECTTSCCCEECTTTTT-------------------TCTTCCEEECTTCCCC
T ss_pred CCceEccCCCcccCCCCCC---C-CcCEEECCCCCcCEeChhhcc-------------------CCccCcEEeCCCCccc
Confidence 4589999999999997543 3 89999999999987 665554 3689999999999999
Q ss_pred cc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC-c
Q psy17253 124 NL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS-P 200 (227)
Q Consensus 124 ~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~-~ 200 (227)
.+ |..|..+++|++|++++|.++...+..+..+++ |+.|++++|.++.++ ..+..+.+|+.|++++|.+..+. |
T Consensus 70 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS---LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT---CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc---CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence 98 668899999999999999999998888877766 999999999999887 66889999999999999998744 7
Q ss_pred cccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 201 DDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 201 ~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
..++.+++|+.|++++|.++++++.
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCEECTT
T ss_pred HhHhhcCCCCEEEccCCcceecChh
Confidence 8899999999999999999998764
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=5.3e-17 Score=128.35 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=111.1
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CC--------CCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AA--------LRPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~--------~~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.. +. .. ++.|.+..++ .+..+++|+
T Consensus 69 ~L~~L~L~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--------~l~~l~~L~ 137 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--------GLVHLPQLE 137 (291)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--------GGGGCTTCC
T ss_pred CCCEEEccCCccCCCcc--cccCC-CCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--------hhcCCCCCC
Confidence 78999999999998876 77887 89999999998887 32 11 1334444332 244578999
Q ss_pred EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 193 (227)
.|++++|.++.+ ..+..+++|+.|++++|.++...+ +..++ +|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~---~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLT---KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCT---TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCC---ccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 999999999998 568899999999999999988764 44454 49999999999998875 788999999999999
Q ss_pred ccccCCc
Q psy17253 194 KLRTISP 200 (227)
Q Consensus 194 ~l~~~~~ 200 (227)
++...+.
T Consensus 211 ~i~~~~~ 217 (291)
T 1h6t_A 211 ECLNKPI 217 (291)
T ss_dssp EEECCCE
T ss_pred cccCCcc
Confidence 9887543
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.1e-16 Score=142.90 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=78.2
Q ss_pred CCCcccEEEccCCCcccccccccCC--------CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh
Q psy17253 108 GVTNIFELKLQHNEIENLDGALMGI--------HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL 179 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 179 (227)
.+++|+.|++++|.++.+|..+... ++|+.|++++|.++.++. .+. ...+++|+.|++++|.++.+|..+
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~-~~~l~~L~~L~Ls~N~L~~lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFR-ATTLPYLSNMDVSYNCFSSFPTQP 772 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGS-TTTCTTCCEEECCSSCCSSCCCGG
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH-Hhh-hccCCCcCEEEeCCCCCCccchhh
Confidence 4567777777777777665544332 267777777777765432 222 012334777888888777777667
Q ss_pred cCCCCCCEEeCCC------CccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 180 MGIHGLSRLDLSH------NKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 180 ~~~~~L~~l~l~~------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
..+++|+.|++++ |++....|..+..+++|+.|++++|.+..+|..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHh
Confidence 7777788887765 555555577777888888888888888888764
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=2.7e-18 Score=146.74 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=144.1
Q ss_pred CCccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCC
Q psy17253 28 TSFGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVC 93 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~ 93 (227)
.+.+++....+..+.. ++++|++++|.+..+++.+|..++ +|+.|++++|.+.+ ++..| +.|.+.
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 3455666666666665 899999999999999888899888 99999999999988 55433 333333
Q ss_pred CCcchhhchhhhhcCCCcccEEEccCCC-ccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC
Q psy17253 94 APPSTLDNLKNQVQGVTNIFELKLQHNE-IENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171 (227)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 171 (227)
.++ .+..+.++++|+.|++++|. ++.++ ..+..+++|+.|++++|.+++..+..+..+++ |+.|++++|.
T Consensus 112 ~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~ 183 (549)
T 2z81_A 112 TLG-----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD---IHHLTLHLSE 183 (549)
T ss_dssp SSC-----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE---EEEEEEECSB
T ss_pred ccc-----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc---CceEecccCc
Confidence 221 12234567899999999998 66675 57899999999999999999887777666655 9999999999
Q ss_pred CcCchhhh-cCCCCCCEEeCCCCccccCC---ccccCCCCCCCEEEcCCCcCcc
Q psy17253 172 IENLDGAL-MGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 172 ~~~~~~~~-~~~~~L~~l~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+..++..+ ..+++|+.|++++|++.... ......++.|+.|++++|.+++
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 98888544 67899999999999998753 2334567889999999998754
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=1.8e-16 Score=127.99 Aligned_cols=163 Identities=24% Similarity=0.342 Sum_probs=106.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
++++|++++|.+..++. +..++ +|+.|++++|.+.. +. ..+ ..+.+..++. +..+++|+
T Consensus 156 ~L~~L~l~~~~~~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~L~ 224 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--------VANMTRLN 224 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCT-TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------GGGCTTCC
T ss_pred CCcEEEecCCCcCCchh--hccCC-CCCEEEccCCcccccccccCCCccceeecccCCCCCCch--------hhcCCcCC
Confidence 45566666665555554 55555 66666666666655 22 000 1222222111 34567888
Q ss_pred EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 193 (227)
.|++++|.++.++. +..+++|+.|++++|.++.++ .+..+ ++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 225 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l---~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 225 SLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDL---TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTC---TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred EEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcC---CCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC
Confidence 88888888877766 777788888888888777652 33333 34888888888877764 3567778888888888
Q ss_pred ccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++....+..+..+++|+.|++++|.++++++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC
Confidence 8877767777778888888888888877765
No 83
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=1.6e-16 Score=136.02 Aligned_cols=156 Identities=18% Similarity=0.202 Sum_probs=120.2
Q ss_pred ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhc
Q psy17253 37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQ 107 (227)
Q Consensus 37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~ 107 (227)
+|..+..+++.|++++|.|+.+| . .++ +|+.|++++|.++. +. .. +.|.+..+|.
T Consensus 74 lp~~l~~~L~~L~Ls~N~l~~ip-~---~l~-~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~---------- 137 (571)
T 3cvr_A 74 LPDNLPPQITVLEITQNALISLP-E---LPA-SLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE---------- 137 (571)
T ss_dssp CCSCCCTTCSEEECCSSCCSCCC-C---CCT-TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC----------
T ss_pred cCHhHcCCCCEEECcCCCCcccc-c---ccC-CCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC----------
Confidence 45545568999999999999998 2 345 89999999999998 55 22 3444444443
Q ss_pred CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC--
Q psy17253 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL-- 185 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L-- 185 (227)
.+++|+.|++++|.++.+|. .+++|+.|++++|.++.++. +. ++|+.|++++|.++.+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~-----~~L~~L~Ls~N~L~~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP-----ESLEALDVSTNLLESLPA-VPV--RNHH 204 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC-----TTCCEEECCSSCCSSCCC-CC-------
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh-----CCCCEEECcCCCCCchhh-HHH--hhhc
Confidence 35789999999999988876 56789999999999988654 43 449999999999998887 543 66
Q ss_pred -----CEEeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 186 -----SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 186 -----~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
+.|++++|+++.+ |..+..+++|+.|++++|++++.
T Consensus 205 ~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp ---CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHH
T ss_pred ccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCc
Confidence 9999999999988 44555599999999999998653
No 84
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.8e-16 Score=117.97 Aligned_cols=134 Identities=19% Similarity=0.392 Sum_probs=107.9
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG 84 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~ 84 (227)
+|..|.|... .+.|... .+ ..+|..++.+++.|++++|.+..+| ..|..++ +|+.|++++|.++. ++
T Consensus 4 CP~~C~C~~~-----~l~~~~~----~l-~~ip~~~~~~l~~L~L~~n~i~~ip-~~~~~l~-~L~~L~Ls~N~i~~i~~ 71 (193)
T 2wfh_A 4 CPTECTCLDT-----VVRCSNK----GL-KVLPKGIPRDVTELYLDGNQFTLVP-KELSNYK-HLTLIDLSNNRISTLSN 71 (193)
T ss_dssp CCTTCEEETT-----EEECTTS----CC-SSCCSCCCTTCCEEECCSSCCCSCC-GGGGGCT-TCCEEECCSSCCCCCCT
T ss_pred CCCCCEeCCC-----EEEcCCC----CC-CcCCCCCCCCCCEEECCCCcCchhH-HHhhccc-CCCEEECCCCcCCEeCH
Confidence 4555777633 6888662 33 3445556668999999999999998 6788898 99999999999988 66
Q ss_pred CCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc
Q psy17253 85 AALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163 (227)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 163 (227)
..|. ++++|+.|++++|.++.++ ..|..+++|+.|++++|.++.++...+..+++ |+
T Consensus 72 ~~f~-------------------~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L~ 129 (193)
T 2wfh_A 72 QSFS-------------------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA---LS 129 (193)
T ss_dssp TTTT-------------------TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT---CC
T ss_pred hHcc-------------------CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc---cc
Confidence 6554 3588999999999999984 57889999999999999999888777766665 99
Q ss_pred EEEcCCCCCc
Q psy17253 164 ELKLQHNEIE 173 (227)
Q Consensus 164 ~l~l~~n~~~ 173 (227)
.|++++|.+.
T Consensus 130 ~L~L~~N~~~ 139 (193)
T 2wfh_A 130 HLAIGANPLY 139 (193)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCee
Confidence 9999999875
No 85
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.4e-16 Score=118.47 Aligned_cols=109 Identities=30% Similarity=0.519 Sum_probs=92.0
Q ss_pred CcccEEEccCCCcccccc--cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253 110 TNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS 186 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~ 186 (227)
.+++.|++++|.++.++. .|..+++|+.|++++|.++++.+..+..+.+ |+.|++++|.++.++ ..+..+++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH---IQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT---CCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc---CCEEECCCCcCCccCHHHhcCCCCCC
Confidence 368899999999988864 3788899999999999998887777766666 899999999998776 4577888999
Q ss_pred EEeCCCCccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
.|++++|+++.+.+..+..+++|+.|++++|+++.
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99999999998888888999999999999998763
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=6.8e-17 Score=129.19 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=88.2
Q ss_pred CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCE
Q psy17253 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSR 187 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~ 187 (227)
.+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+++. +..++ +|+.|++++|.++.+|..+..+++|+.
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~---~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAA---GVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGT---TCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred ccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccC---cccEEECcCCcccchhhHhhcCCCCCE
Confidence 578999999999999998654 3589999999999999988654 54444 499999999999999988888999999
Q ss_pred EeCCCCccc-cCCccccCCCCCCCEEEcCC
Q psy17253 188 LDLSHNKLR-TISPDDFIGLDSLKMLDISH 216 (227)
Q Consensus 188 l~l~~n~l~-~~~~~~~~~~~~L~~L~l~~ 216 (227)
+++++|.+. ...+..+..++.|+.+++.+
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCC
Confidence 999999998 44467788888888888773
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=5.9e-17 Score=129.12 Aligned_cols=116 Identities=21% Similarity=0.169 Sum_probs=84.4
Q ss_pred CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcc---cCCCCCCCCCCCCcccEEEcCCCCCcCchh----hh
Q psy17253 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT---ISPDDFIGLDSVTNIFELKLQHNEIENLDG----AL 179 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~ 179 (227)
.+++|+.|++++|.++.+ +..+..+++|++|++++|.+.+ .....+ ...+++|+.|++++|.++.++. .+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC--PHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--TTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--hhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 578899999999999887 4678888999999999998754 222111 1233448888888888876654 23
Q ss_pred cCCCCCCEEeCCCCccccCCccccCCC---CCCCEEEcCCCcCcccCCC
Q psy17253 180 MGIHGLSRLDLSHNKLRTISPDDFIGL---DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~lp~~ 225 (227)
..+++|+.|++++|++....|..+..+ ++|+.|++++|.++++|..
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 566788888888888887755555554 5788888888888887764
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=2.8e-16 Score=135.99 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=28.0
Q ss_pred cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253 36 ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 36 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
.+|..++.+++.|++++|.+..+|. .++ +|+.|++++|.++.
T Consensus 54 ~lp~~l~~~L~~L~L~~N~l~~lp~----~l~-~L~~L~Ls~N~l~~ 95 (622)
T 3g06_A 54 TLPDCLPAHITTLVIPDNNLTSLPA----LPP-ELRTLEVSGNQLTS 95 (622)
T ss_dssp CCCSCCCTTCSEEEECSCCCSCCCC----CCT-TCCEEEECSCCCSC
T ss_pred ccChhhCCCCcEEEecCCCCCCCCC----cCC-CCCEEEcCCCcCCc
Confidence 3344444577788888877777765 234 67777777777766
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=139.88 Aligned_cols=175 Identities=19% Similarity=0.232 Sum_probs=112.8
Q ss_pred CccEEEeCCCCCCCCC--hhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcch---hhch--hhhhcCCCcccEE
Q psy17253 44 DSISLKIAVSNLNDLP--SKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPST---LDNL--KNQVQGVTNIFEL 115 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~--~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~---~~~~--~~~~~~l~~L~~L 115 (227)
+++.|++++|.+..+. ...+..++ +|+.|++++|.+.. +........+..+.-+ +... ...+..+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccC-ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 5777777777776553 34566666 77777777777665 3321111111111100 0011 0123456778888
Q ss_pred EccCCCcccc-cccccCCCCCCEEEcCCCcCc-ccCCCCCCCCCCCCcccEEEcCCCCCcCc-hhhhcCCCCCCEEeCCC
Q psy17253 116 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSH 192 (227)
Q Consensus 116 ~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~L~~l~l~~ 192 (227)
++++|.++.. +..+..+++|+.|++++|.+. ...+..+..+++ |+.|++++|.++.+ |..+..+++|+.|++++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---CCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC---CCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 8888877764 566777788888888888776 233444444444 88888888888766 46677778888888888
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
|+++.+.+..+..+++|+.|++++|+++.-
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 888887777778888888888888877643
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=9e-17 Score=135.69 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=111.5
Q ss_pred ccchhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC-CC-----CCCCCCCCcch--
Q psy17253 30 FGQVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA-AL-----RPIDVCAPPST-- 98 (227)
Q Consensus 30 ~~~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~-~~-----~~~~l~~~~~~-- 98 (227)
.+.+....+..|.. +|+.|++++|.+..+++ |..++ +|+.|++++|.+.. +.. .+ +.|.+..++..
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l 119 (487)
T 3oja_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119 (487)
T ss_dssp SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCC
T ss_pred CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcccc
Confidence 34455555555554 78888888888876554 66776 78888887777765 321 11 33333332211
Q ss_pred ------------hhch-hhhhcCCCcccEEEccCCCcccc-ccccc-CCCCCCEEEcCCCcCcccCCCCCCCCCCCCccc
Q psy17253 99 ------------LDNL-KNQVQGVTNIFELKLQHNEIENL-DGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163 (227)
Q Consensus 99 ------------~~~~-~~~~~~l~~L~~L~l~~n~l~~l-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 163 (227)
+..+ +..+..+++|+.|++++|.++.+ |..+. .+++|+.|++++|.+++.+... .+++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-----~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----VFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-----CCTTCC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-----cCCCCC
Confidence 0011 11223456677777777777664 44444 5667777777777776664321 234477
Q ss_pred EEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 164 ~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
.|++++|.++.+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.
T Consensus 195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBC
T ss_pred EEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCc
Confidence 77777777777765566777777777777777766 445666777777777777765
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3.9e-16 Score=134.79 Aligned_cols=149 Identities=25% Similarity=0.385 Sum_probs=116.4
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIE 123 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 123 (227)
+|+.|++++|.+..++. +..++ +|+.|++++|.+... + .+..+++|+.|+|++|.++
T Consensus 66 ~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l------------~--------~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 66 NVTKLFLNGNKLTDIKP--LTNLK-NLGWLFLDENKIKDL------------S--------SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp TCCEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCC------------T--------TSTTCTTCCEEECTTSCCC
T ss_pred CCCEEEeeCCCCCCChh--hccCC-CCCEEECcCCCCCCC------------h--------hhccCCCCCEEEecCCCCC
Confidence 57777777777777665 66666 777777777776541 1 1224688999999999998
Q ss_pred cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcccc
Q psy17253 124 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 203 (227)
Q Consensus 124 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 203 (227)
.++. +..+++|+.|+|++|.+..+ ..+..+ ++|+.|+|++|.+..++. +..+++|+.|++++|.++.+ ..+
T Consensus 123 ~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l---~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l 193 (605)
T 1m9s_A 123 DING-LVHLPQLESLYLGNNKITDI--TVLSRL---TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RAL 193 (605)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCCCC--GGGGSC---TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGG
T ss_pred CCcc-ccCCCccCEEECCCCccCCc--hhhccc---CCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHH
Confidence 8754 78889999999999998876 244444 449999999999988766 78889999999999999887 358
Q ss_pred CCCCCCCEEEcCCCcCcccCC
Q psy17253 204 IGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 204 ~~~~~L~~L~l~~n~l~~lp~ 224 (227)
..+++|+.|++++|.+...|.
T Consensus 194 ~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TTCTTCSEEECCSEEEECCCC
T ss_pred ccCCCCCEEEccCCcCcCCcc
Confidence 889999999999999887664
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=6.1e-16 Score=129.89 Aligned_cols=162 Identities=20% Similarity=0.397 Sum_probs=99.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
+++.|++++|.+..++ .+..++ +|+.|++++|.+.. ++ ..+ +.+.+..++. +..+++|+
T Consensus 222 ~L~~L~l~~n~l~~~~--~l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~ 290 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIG--TLASLT-NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--------LAGLTALT 290 (466)
T ss_dssp TCCEEECCSSCCCCCG--GGGGCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--------GTTCTTCS
T ss_pred CCCEEECCCCCcccch--hhhcCC-CCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--------ccCCCccC
Confidence 4555555555555543 244454 56666666665554 21 000 2222222211 33456777
Q ss_pred EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCC
Q psy17253 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n 193 (227)
.|++++|.++.++. +..+++|+.|++++|.+.+..+ +.. +++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 291 ~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~---l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 291 NLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSS---LTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp EEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGG---CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred eEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hcc---CccCCEeECCCCccCCch-hhccCCCCCEEeCCCC
Confidence 77777777766654 5667777777777777766543 333 344777888888777664 4667778888888888
Q ss_pred ccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 194 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
+++++.+ +..++.|+.|++++|.++.+|..
T Consensus 364 ~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 364 QISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred ccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 8877755 77788888888888888876654
No 93
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=6.9e-16 Score=124.58 Aligned_cols=159 Identities=20% Similarity=0.353 Sum_probs=125.2
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.. +. ..+ ..+.+..++. +..+++|+
T Consensus 178 ~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~l~~L~ 246 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--------LANLSQLT 246 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCC
T ss_pred CCCEEEccCCccccccc--ccCCC-ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--------hhcCCCCC
Confidence 79999999999988876 77777 88999999888876 32 111 3333433332 44678999
Q ss_pred EEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCC
Q psy17253 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192 (227)
Q Consensus 114 ~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~ 192 (227)
.|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+ ++|+.|++++|.++..+ ..+..+++|+.|++++
T Consensus 247 ~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS--VLNNL---SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp EEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGGGC---TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred EEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh--hhcCC---CCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 9999999999874 5888999999999999998763 34444 45999999999998665 6788999999999999
Q ss_pred CccccCCccccCCCCCCCEEEcCCCcCcc
Q psy17253 193 NKLRTISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 193 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
|+++.+.+ +..++.|+.|++++|.+++
T Consensus 321 n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 321 NHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred CccccccC--hhhhhccceeehhhhcccC
Confidence 99998855 8889999999999999864
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=6.2e-16 Score=118.04 Aligned_cols=150 Identities=23% Similarity=0.298 Sum_probs=125.4
Q ss_pred CccEEEeCCCCCCCCChhhhhccccccc--EEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIV--NLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHN 120 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~--~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 120 (227)
..+.++.+++.+..+|... .-. .|++++|.+.. ++..|. ++++|+.|++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~L~~N 74 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI------PTNAQILYLHDNQITKLEPGVFD-------------------SLINLKELYLGSN 74 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC------CTTCSEEECCSSCCCCCCTTTTT-------------------TCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCCC------CCCCCEEEcCCCccCccCHHHhh-------------------CccCCcEEECCCC
Confidence 4567888998888888521 122 26777888776 444443 3588999999999
Q ss_pred Cccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCC
Q psy17253 121 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 199 (227)
Q Consensus 121 ~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 199 (227)
.++.++ ..|..+++|+.|++++|.++.+++..+..+++ |+.|++++|.++.+|..+..+++|+.|++++|+++.+.
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~---L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH---LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh---hCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence 999986 45788999999999999999988776666666 99999999999999988899999999999999999998
Q ss_pred ccccCCCCCCCEEEcCCCcCcc
Q psy17253 200 PDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 200 ~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
+..|..+++|+.|++++|+++.
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCT
T ss_pred HHHHhCCCCCCEEEeeCCCccC
Confidence 8889999999999999999864
No 95
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=135.20 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=99.7
Q ss_pred EEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchh
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTL 99 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~ 99 (227)
.+.|.. +++. .+|..++.++++|++++|.+..+++..|..++ +|+.|++++|.+.. .+..|.
T Consensus 4 ~l~ls~----n~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~----------- 66 (520)
T 2z7x_B 4 LVDRSK----NGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFK----------- 66 (520)
T ss_dssp EEECTT----SCCS-SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGT-----------
T ss_pred eEecCC----CCcc-cccccccccccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhh-----------
Confidence 455544 3444 35555567899999999999999999999998 99999999999886 444432
Q ss_pred hchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccC-CCCCCCCCCCCcccEEEcCCCCCcCchhh
Q psy17253 100 DNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSVTNIFELKLQHNEIENLDGA 178 (227)
Q Consensus 100 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 178 (227)
++++|++|++++|.++.+|.. .+++|++|++++|.+++.. +..++.+++ |+.|++++|.++. ..
T Consensus 67 --------~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~---L~~L~L~~n~l~~--~~ 131 (520)
T 2z7x_B 67 --------FNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEK--SS 131 (520)
T ss_dssp --------TCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT---CCEEEEEESSCCG--GG
T ss_pred --------cccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCc---ceEEEecCcccch--hh
Confidence 356777777777777777665 6777777777777776642 344544444 7777777777654 22
Q ss_pred hcCCCCC--CEEeCCCCcc
Q psy17253 179 LMGIHGL--SRLDLSHNKL 195 (227)
Q Consensus 179 ~~~~~~L--~~l~l~~n~l 195 (227)
+..+++| +.|++++|.+
T Consensus 132 ~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGGGTTSCEEEEEEEECTT
T ss_pred ccccccceeeEEEeecccc
Confidence 3444555 6666666666
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=144.18 Aligned_cols=185 Identities=23% Similarity=0.285 Sum_probs=96.8
Q ss_pred chhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC-----------CCCCCCCCcc
Q psy17253 32 QVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL-----------RPIDVCAPPS 97 (227)
Q Consensus 32 ~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~-----------~~~~l~~~~~ 97 (227)
.+....+..|.. +++.|++++|.+..++..+|..++ +|+.|++++|.+.. .+..| +.|.+..++.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 344444444443 666677777766666666666665 66666666666665 44433 2233333222
Q ss_pred hhhchhhhhcCCCcccEEEccCCCccc-------------------ccc----------------------cccCCCCCC
Q psy17253 98 TLDNLKNQVQGVTNIFELKLQHNEIEN-------------------LDG----------------------ALMGIHGLS 136 (227)
Q Consensus 98 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------l~~----------------------~~~~l~~L~ 136 (227)
. .+.++++|+.|++++|.++. +|. .+..+++|+
T Consensus 356 ~------~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 356 Q------TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp S------CSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred h------hhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccc
Confidence 1 11123344444444433332 211 123556666
Q ss_pred EEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch------hhhcCCCCCCEEeCCCCccccCCccccCCCCCCC
Q psy17253 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210 (227)
Q Consensus 137 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 210 (227)
.|++++|.++....... ...+++|+.|++++|.++..+ ..+..+++|+.|++++|+++.+.+..|..+++|+
T Consensus 430 ~L~Ls~N~l~~~~~~~~--~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 507 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQT--PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507 (844)
T ss_dssp EEEEESCCCCCCCSSSS--SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS
T ss_pred eeeCCCCcccccccccc--cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh
Confidence 66666666655433211 111233566666666554221 2344556666666666666666666666666666
Q ss_pred EEEcCCCcCcccCCC
Q psy17253 211 MLDISHNLLTTLEET 225 (227)
Q Consensus 211 ~L~l~~n~l~~lp~~ 225 (227)
.|++++|.++++|+.
T Consensus 508 ~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 508 GLSLNSNRLTVLSHN 522 (844)
T ss_dssp EEEEESCCCSSCCCC
T ss_pred eeECCCCCCCccChh
Confidence 777777666666654
No 97
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.7e-17 Score=117.11 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=110.3
Q ss_pred cccEEEccCCCCC--CCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCc
Q psy17253 69 QIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 146 (227)
Q Consensus 69 ~L~~L~l~~n~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~ 146 (227)
+++.|++++|.+. ..+..+ ..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~-------------------~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLT-------------------AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF 84 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCC-------------------GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCC
T ss_pred cCCEEECCCCCCChhhHHHHH-------------------HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCc
Confidence 6777777777765 211111 1357899999999999988 77888999999999999998
Q ss_pred ccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc---cccCCCCCCCEEEcCCCcCcc
Q psy17253 147 TISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP---DDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 147 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~ 221 (227)
...+..+..+++ |+.|++++|.++.++ ..+..+++|+.|++++|.++.+.+ ..+..+++|+.|++++|.+.+
T Consensus 85 ~~~~~~~~~l~~---L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 85 GGLDMLAEKLPN---LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SCCCHHHHHCTT---CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hHHHHHHhhCCC---CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 855544433444 999999999999876 677889999999999999998865 588999999999999999999
Q ss_pred cCCCCC
Q psy17253 222 LEETSK 227 (227)
Q Consensus 222 lp~~~~ 227 (227)
+|.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 2ell_A 162 APDSDA 167 (168)
T ss_dssp CCSSSC
T ss_pred cccccc
Confidence 998753
No 98
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=2.2e-15 Score=126.25 Aligned_cols=157 Identities=26% Similarity=0.267 Sum_probs=78.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTNIFE 114 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~~ 114 (227)
++++|++++|.+..++ +..++ +|+.|++++|.+.+ +-..+ +.|.+..++ +..+++|+.
T Consensus 65 ~L~~L~Ls~n~l~~~~---~~~l~-~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~---------~~~l~~L~~ 131 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD---LSQNT-NLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD---------VSQNPLLTY 131 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC---------CTTCTTCCE
T ss_pred CCCEEEccCCcCCeEc---cccCC-CCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec---------CCCCCcCCE
Confidence 5677777777766664 55555 67777777776665 31111 222222221 234566666
Q ss_pred EEccCCCcccccccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCCCcCchh----------------
Q psy17253 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNEIENLDG---------------- 177 (227)
Q Consensus 115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---------------- 177 (227)
|++++|.++.++ +..+++|+.|++++|. +..+ .+ ..+++|+.|++++|.++.+|-
T Consensus 132 L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~---~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DV---TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CC---TTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceec--cccCCcCCEEECCCCCccccc---cc---ccCCcCCEEECCCCccceeccccCCCCCEEECcCCcC
Confidence 666666666542 3333444444444432 1111 11 112234444444444444330
Q ss_pred ---hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 178 ---ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 178 ---~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
.+..+++|+.|++++|+++++ | ++.+++|+.|++++|.++++|.
T Consensus 204 ~~~~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 204 TKLDLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC
T ss_pred CeeccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH
Confidence 133445555566666655554 2 4556666666666666666553
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.4e-16 Score=136.10 Aligned_cols=148 Identities=26% Similarity=0.390 Sum_probs=127.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+|+.|++++|.+..++. +..++ +|+.|++++|.+.. ++ +..+++|+.|+|++|.+
T Consensus 44 ~L~~L~l~~n~i~~l~~--l~~l~-~L~~L~Ls~N~l~~~~~---------------------l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQG--IQYLP-NVTKLFLNGNKLTDIKP---------------------LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp TCCCCBCTTCCCCCCTT--GGGCT-TCCEEECTTSCCCCCGG---------------------GGGCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCCChH--HccCC-CCCEEEeeCCCCCCChh---------------------hccCCCCCEEECcCCCC
Confidence 69999999999999874 78887 99999999999875 22 23468999999999999
Q ss_pred ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202 (227)
Q Consensus 123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 202 (227)
+.++ .+..+++|+.|+|++|.+..++ .+.. +++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+
T Consensus 100 ~~l~-~l~~l~~L~~L~Ls~N~l~~l~--~l~~---l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 KDLS-SLKDLKKLKSLSLEHNGISDIN--GLVH---LPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp CCCT-TSTTCTTCCEEECTTSCCCCCG--GGGG---CTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CCCh-hhccCCCCCEEEecCCCCCCCc--cccC---CCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--
Confidence 9877 5889999999999999998753 3444 45599999999999988 557889999999999999998855
Q ss_pred cCCCCCCCEEEcCCCcCcccCC
Q psy17253 203 FIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+..+++|+.|++++|.++++|.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG
T ss_pred hccCCCCCEEECcCCCCCCChH
Confidence 8999999999999999998864
No 100
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=1.2e-15 Score=111.85 Aligned_cols=134 Identities=21% Similarity=0.420 Sum_probs=101.2
Q ss_pred ccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCC
Q psy17253 8 CTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAA 86 (227)
Q Consensus 8 ~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~ 86 (227)
..|.|... .+.|... ++ ..+|..+..+++.|++++|.+..++...|..++ +|+.|++++|.+.. +...
T Consensus 3 ~~C~C~~~-----~l~~~~~----~l-~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 3 SRCSCSGT-----EIRCNSK----GL-TSVPTGIPSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp TTCEEETT-----EEECCSS----CC-SSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTT
T ss_pred CCCEeCCC-----EEEecCC----CC-ccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhH
Confidence 34555433 6888662 22 233444556899999999999999988888887 99999999999887 5544
Q ss_pred CCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEE
Q psy17253 87 LRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165 (227)
Q Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l 165 (227)
|. ++++|+.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+++ |+.|
T Consensus 72 ~~-------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~---L~~L 129 (177)
T 2o6r_A 72 FD-------------------KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS---LQKI 129 (177)
T ss_dssp TT-------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT---CCEE
T ss_pred cc-------------------CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc---cCEE
Confidence 43 35789999999999988754 4678889999999999988877665555555 8889
Q ss_pred EcCCCCCcC
Q psy17253 166 KLQHNEIEN 174 (227)
Q Consensus 166 ~l~~n~~~~ 174 (227)
++++|.+..
T Consensus 130 ~l~~N~~~~ 138 (177)
T 2o6r_A 130 WLHTNPWDC 138 (177)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeec
Confidence 999998764
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-16 Score=124.31 Aligned_cols=158 Identities=25% Similarity=0.371 Sum_probs=130.7
Q ss_pred chhhcccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCC
Q psy17253 32 QVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVT 110 (227)
Q Consensus 32 ~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 110 (227)
.+.+.+|..-..++..++++++.+.+++ .+..++ +|+.|++++|.+.. + . +..++
T Consensus 8 ~i~~~~pd~~l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l~--~-------------------l~~l~ 63 (263)
T 1xeu_A 8 PINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSLA--G-------------------MQFFT 63 (263)
T ss_dssp EHHHHCCSHHHHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCCT--T-------------------GGGCT
T ss_pred CHHHhCCCHHHHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccch--H-------------------HhhCC
Confidence 3444555543336888899999999888 477887 99999999999875 2 1 12368
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeC
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 190 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l 190 (227)
+|+.|++++|.++.++. +..+++|+.|++++|.++.++.. .. ++|+.|++++|.++.++. +..+++|+.|++
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~----~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L 135 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS----ACLSRLFLDNNELRDTDS-LIHLKNLEILSI 135 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC----SSCCEEECCSSCCSBSGG-GTTCTTCCEEEC
T ss_pred CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc----CcccEEEccCCccCCChh-hcCcccccEEEC
Confidence 99999999999999977 89999999999999999887542 22 459999999999998864 788999999999
Q ss_pred CCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
++|+++.+ + .+..+++|+.|++++|.+++++
T Consensus 136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~ 166 (263)
T 1xeu_A 136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTG 166 (263)
T ss_dssp TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCT
T ss_pred CCCcCCCC-h-HHccCCCCCEEECCCCcCcchH
Confidence 99999998 3 6888999999999999998874
No 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=8.5e-16 Score=114.14 Aligned_cols=135 Identities=27% Similarity=0.519 Sum_probs=105.5
Q ss_pred CCccccccCCCCCceEEEecCCCCccchhhcccCCCCCCccEEEeCCCCCCCCChh-hhhcccccccEEEccCCCCCC-C
Q psy17253 6 NPCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSK-TFQELGLQIVNLKLTKNNLRP-D 83 (227)
Q Consensus 6 ~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~n~~~~-~ 83 (227)
+|-.|.|... .+.|... ++ ..+|..++.+++.|++++|.+..++.. .|..++ +|+.|++++|.++. .
T Consensus 2 CP~~C~C~~~-----~l~~s~~----~l-~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~ 70 (192)
T 1w8a_A 2 CPAMCHCEGT-----TVDCTGR----GL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIE 70 (192)
T ss_dssp CCTTSEEETT-----EEECTTS----CC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBC
T ss_pred cCCCCEECCC-----EEEcCCC----Cc-CcCccCCCCCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcC
Confidence 3444666542 6778662 33 344555555899999999999988864 588887 99999999999987 5
Q ss_pred CCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcc
Q psy17253 84 GAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162 (227)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 162 (227)
+..|. ++++|+.|++++|.++.++ ..|..+++|+.|++++|.+++..+..+..+++ |
T Consensus 71 ~~~~~-------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~---L 128 (192)
T 1w8a_A 71 PNAFE-------------------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS---L 128 (192)
T ss_dssp TTTTT-------------------TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT---C
T ss_pred HhHcC-------------------CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC---C
Confidence 55553 3578999999999999874 45888999999999999999888777766665 9
Q ss_pred cEEEcCCCCCc
Q psy17253 163 FELKLQHNEIE 173 (227)
Q Consensus 163 ~~l~l~~n~~~ 173 (227)
+.|++++|.+.
T Consensus 129 ~~L~L~~N~l~ 139 (192)
T 1w8a_A 129 TSLNLASNPFN 139 (192)
T ss_dssp CEEECTTCCBC
T ss_pred CEEEeCCCCcc
Confidence 99999999886
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=8.4e-16 Score=131.62 Aligned_cols=150 Identities=22% Similarity=0.241 Sum_probs=116.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKNQVQGVTNIFE 114 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~~~~~l~~L~~ 114 (227)
+++.|++++|.+..+|...+ + +|+.|++++|.++. + ..+ +.|.+..+|. +. .+|+.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~-~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~---------~~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---P-QITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LP---------ASLKH 124 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---T-TCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CC---------TTCCE
T ss_pred CccEEEeCCCCCCccCHhHc---C-CCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hh---------cCCCE
Confidence 68999999999999987643 4 89999999999998 6 333 4555555554 21 27889
Q ss_pred EEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCc
Q psy17253 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194 (227)
Q Consensus 115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 194 (227)
|++++|.++.+|. .+++|+.|++++|.++.++. .+ ++|+.|++++|.++.+|. +. ++|+.|++++|+
T Consensus 125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l---~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 125 LDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LP---TSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CC---TTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred EECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cC---CCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 9999998888877 57889999999998887653 23 448999999999988887 54 889999999999
Q ss_pred cccCCccccCCCCCC-------CEEEcCCCcCcccCCC
Q psy17253 195 LRTISPDDFIGLDSL-------KMLDISHNLLTTLEET 225 (227)
Q Consensus 195 l~~~~~~~~~~~~~L-------~~L~l~~n~l~~lp~~ 225 (227)
++.++. +.. +| +.|++++|.++.+|..
T Consensus 192 L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 192 LESLPA--VPV--RNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp CSSCCC--CC----------CCEEEECCSSCCCCCCGG
T ss_pred CCchhh--HHH--hhhcccccceEEecCCCcceecCHH
Confidence 987744 444 66 8999999999998864
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=2.2e-15 Score=110.35 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=95.8
Q ss_pred CcccEEEccCCCcccccc-cccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCE
Q psy17253 110 TNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSR 187 (227)
Q Consensus 110 ~~L~~L~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~ 187 (227)
++++.|++++|.++.++. .+..+++|+.|++++|.++.+++..+..+.+ |+.|++++|.++.++. .+..+++|+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK---LTILYLHENKLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc---cCEEECCCCCccccCHHHhhCCcccCE
Confidence 579999999999998854 5688999999999999999887766666655 9999999999998874 4678899999
Q ss_pred EeCCCCccccCCccccCCCCCCCEEEcCCCcCccc
Q psy17253 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222 (227)
Q Consensus 188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~l 222 (227)
|++++|+++.+.+..+..+++|+.|++++|++...
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999999998777889999999999999998654
No 105
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=1.1e-14 Score=121.96 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=111.3
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCC--------CCCCCCCCcchhhchhh----------
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAAL--------RPIDVCAPPSTLDNLKN---------- 104 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~--------~~~~l~~~~~~~~~~~~---------- 104 (227)
++++|++++|.+..++ +..++ +|+.|++++|.+.. +-..+ +.+.+..++ +..++.
T Consensus 86 ~L~~L~Ls~N~l~~~~---~~~l~-~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD---VTPLT-KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCT-TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCS
T ss_pred CCCEEECcCCCCceee---cCCCC-cCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCC
Confidence 5777777777777664 55565 67777777777665 32111 333333332 111100
Q ss_pred -----hhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhh
Q psy17253 105 -----QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL 179 (227)
Q Consensus 105 -----~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 179 (227)
.+..+++|+.|++++|.++.+| +..+++|+.|++++|.++.++ +..+ ++|+.|++++|+++.+| +
T Consensus 160 ~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~---l~~l---~~L~~L~Ls~N~l~~ip--~ 229 (457)
T 3bz5_A 160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD---LNQN---IQLTFLDCSSNKLTEID--V 229 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC---CTTC---TTCSEEECCSSCCSCCC--C
T ss_pred cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec---cccC---CCCCEEECcCCcccccC--c
Confidence 1335678888888888888876 678888999999999888762 3334 45999999999999987 7
Q ss_pred cCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 180 ~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
..+++|+.|++++|+++.+++ +.++.|+.|++++|.++.+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCC
T ss_pred cccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEE
Confidence 788999999999999998854 45566666666666665543
No 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=6e-15 Score=123.85 Aligned_cols=167 Identities=26% Similarity=0.418 Sum_probs=92.1
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CC-CCC--------CCCCCCCCcchhhch-----------
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DG-AAL--------RPIDVCAPPSTLDNL----------- 102 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~--------~~~~l~~~~~~~~~~----------- 102 (227)
+++.|++++|.+..++. +..++ +|+.|++++|.+.. ++ ..+ ..+.+..++. +..+
T Consensus 178 ~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 178 TLERLDISSNKVSDISV--LAKLT-NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN 253 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCT-TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSS
T ss_pred CCCEEECcCCcCCCChh--hccCC-CCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCC
Confidence 67777777777776643 56665 77777777777665 22 111 2233322211 1110
Q ss_pred -----hhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh
Q psy17253 103 -----KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG 177 (227)
Q Consensus 103 -----~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 177 (227)
.. +.++++|+.|++++|.++.++. +..+++|+.|++++|.+...++ +. .+++|+.|++++|.++.++.
T Consensus 254 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~---~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 254 QISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--IS---NLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GG---GCTTCSEEECCSSCCSCCGG
T ss_pred ccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hc---CCCCCCEEECcCCcCCCchh
Confidence 00 2234455555555555554433 4455555555555555544432 22 23336666666666665543
Q ss_pred hhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 178 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++++++
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 45566677777777766665 356677777777777777776654
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=3.8e-15 Score=128.93 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC
Q psy17253 43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP 82 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~ 82 (227)
.+|++|++++|.++.+|. .++ +|+.|++++|.+..
T Consensus 81 ~~L~~L~Ls~N~l~~lp~----~l~-~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV----LPP-GLLELSIFSNPLTH 115 (622)
T ss_dssp TTCCEEEECSCCCSCCCC----CCT-TCCEEEECSCCCCC
T ss_pred CCCCEEEcCCCcCCcCCC----CCC-CCCEEECcCCcCCC
Confidence 468888888888887776 344 77777777777766
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=8.5e-15 Score=122.59 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=25.7
Q ss_pred ccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 162 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 162 L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
|+.|++++|+++.+|.. ..+|+.|++++|++..++ .. .++|+.|++++|.++++|
T Consensus 239 L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~-~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 239 LTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLP-EL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCC-CC---CTTCCEEECCSSCCSEES
T ss_pred CCEEECCCCcCCccccc---ccccCEEECCCCcccccC-cc---cCcCCEEECcCCccCccc
Confidence 55555555555444431 244555555555554431 11 244555555555555543
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=1.5e-14 Score=121.12 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=75.3
Q ss_pred CCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCC--C-----CCCCCCCCCcchhhchhhhhcCCCcccE
Q psy17253 43 NDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGA--A-----LRPIDVCAPPSTLDNLKNQVQGVTNIFE 114 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~--~-----~~~~~l~~~~~~~~~~~~~~~~l~~L~~ 114 (227)
.+++.|++++|.+..+|.. .. +|+.|++++|.+.+ +.. . ++.+.+..+| . +.++++|+.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~----~~-~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~-------~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL----PQ-SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-E-------LQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC----CT-TCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-C-------CTTCTTCCE
T ss_pred CCCCEEEccCCcCCccccc----cC-CCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-c-------cCCCCCCCE
Confidence 4677777777777766632 23 66677777776665 321 1 1334444333 1 223455666
Q ss_pred EEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCc
Q psy17253 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194 (227)
Q Consensus 115 L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~ 194 (227)
|++++|.++.+|..+ .+|+.|++++|.+++++ .+..+++ |+.|++++|.++.+|... .+|+.|++++|.
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~--~~~~l~~---L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP--ELQNLPF---LTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC--CCTTCTT---CCEEECCSSCCSSCCCCC---TTCCEEECCSSC
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc--cccCCCC---CCEEECCCCcCCcCCCCc---CcccEEECcCCc
Confidence 666666555554422 25555555555555432 2222222 555555555544433211 244444444444
Q ss_pred cccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 195 LRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 195 l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+..+ + .++.+++|+.|++++|.++++|
T Consensus 227 l~~l-p-~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 227 LEEL-P-ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CSSC-C-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCcc-c-ccCCCCCCCEEECCCCcCCccc
Confidence 4433 2 2444444444444444444443
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=2.4e-15 Score=109.19 Aligned_cols=139 Identities=23% Similarity=0.248 Sum_probs=112.7
Q ss_pred cccCCCCCCccEEEeCCCCCC--CCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 36 ALQDRFGNDSISLKIAVSNLN--DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 36 ~~~~~~~~~l~~L~l~~~~l~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
..+...+.+++.|++++|.+. .+|.. +..++ +|+.|++++|.+... .. +..+++|+
T Consensus 17 ~~~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~-~L~~L~l~~n~l~~~-~~-------------------~~~l~~L~ 74 (168)
T 2ell_A 17 ELRNRTPAAVRELVLDNCKSNDGKIEGL-TAEFV-NLEFLSLINVGLISV-SN-------------------LPKLPKLK 74 (168)
T ss_dssp HHTTSCTTSCSEEECCSCBCBTTBCSSC-CGGGG-GCCEEEEESSCCCCC-SS-------------------CCCCSSCC
T ss_pred hhccCCcccCCEEECCCCCCChhhHHHH-HHhCC-CCCEEeCcCCCCCCh-hh-------------------hccCCCCC
Confidence 334455568999999999998 77754 77887 999999999998742 11 22468999
Q ss_pred EEEccCCCccc-ccccccCCCCCCEEEcCCCcCcccCC-CCCCCCCCCCcccEEEcCCCCCcCchh----hhcCCCCCCE
Q psy17253 114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSR 187 (227)
Q Consensus 114 ~L~l~~n~l~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~----~~~~~~~L~~ 187 (227)
.|++++|.++. +|..+..+++|+.|++++|.++.++. ..+..++ +|+.|++++|.++.++. .+..+++|+.
T Consensus 75 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~---~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 75 KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE---CLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp EEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS---CCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred EEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC---CCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 99999999998 67777779999999999999988642 3444444 49999999999998875 6788999999
Q ss_pred EeCCCCccccCC
Q psy17253 188 LDLSHNKLRTIS 199 (227)
Q Consensus 188 l~l~~n~l~~~~ 199 (227)
|++++|.+..++
T Consensus 152 L~l~~n~~~~~~ 163 (168)
T 2ell_A 152 LDGYDREDQEAP 163 (168)
T ss_dssp ETTEETTSCBCC
T ss_pred ecCCCCChhhcc
Confidence 999999988773
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=1.2e-14 Score=108.19 Aligned_cols=143 Identities=18% Similarity=0.301 Sum_probs=115.4
Q ss_pred CCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccc
Q psy17253 51 AVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL 129 (227)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 129 (227)
..+....+.. ..++ +++.|++++|.+.. + . +..+++|+.|++++|.++.++ .+
T Consensus 31 ~~~~~~~i~~---~~l~-~L~~L~l~~n~i~~l~-~--------------------l~~l~~L~~L~l~~n~~~~~~-~l 84 (197)
T 4ezg_A 31 GQSSTANITE---AQMN-SLTYITLANINVTDLT-G--------------------IEYAHNIKDLTINNIHATNYN-PI 84 (197)
T ss_dssp TCCTTCCCBH---HHHH-TCCEEEEESSCCSCCT-T--------------------GGGCTTCSEEEEESCCCSCCG-GG
T ss_pred CCCccccCCh---hhcC-CccEEeccCCCccChH-H--------------------HhcCCCCCEEEccCCCCCcch-hh
Confidence 3333445543 4555 89999999999875 3 1 123588999999999887765 58
Q ss_pred cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhhcCCCCCCEEeCCCCc-cccCCccccCCCC
Q psy17253 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLD 207 (227)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~ 207 (227)
..+++|++|++++|.++...+..+..+++ |+.|++++|.++. .+..+..+++|+.|++++|. +..+ + .+..++
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~ 159 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTS---LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP 159 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTT---CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCC---CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence 88999999999999998866666666555 9999999999985 46778899999999999998 8877 3 688999
Q ss_pred CCCEEEcCCCcCcccCC
Q psy17253 208 SLKMLDISHNLLTTLEE 224 (227)
Q Consensus 208 ~L~~L~l~~n~l~~lp~ 224 (227)
+|+.|++++|.+++++.
T Consensus 160 ~L~~L~l~~n~i~~~~~ 176 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYRG 176 (197)
T ss_dssp SCCEEECTTBCCCCCTT
T ss_pred CCCEEECCCCCCcChHH
Confidence 99999999999998863
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.3e-17 Score=142.97 Aligned_cols=174 Identities=21% Similarity=0.239 Sum_probs=131.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC--CCCCCCCCCCCCCcchhhchhhh----------------
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP--DGAALRPIDVCAPPSTLDNLKNQ---------------- 105 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~l~~~~~~~~~~~~~---------------- 105 (227)
+++.|++++|.+..+|.. +..++ +|+.|++++|.... +......+.....|..+..+.++
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~-i~~l~-~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSE-LESCK-ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TSSSCCCCHHHHHHHHHH-HHHHH-HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cceeccCChhhHHhhHHH-HHHHH-HHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 788999999999988764 67777 89999986654100 00000000011122222211111
Q ss_pred -------hc--CCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch
Q psy17253 106 -------VQ--GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD 176 (227)
Q Consensus 106 -------~~--~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 176 (227)
+. ....|+.|++++|.++.+|. +..+++|+.|++++|.++.++ ..+..+++ |+.|++++|.++.+|
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~---L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALP-PALAALRC---LEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCC-GGGGGCTT---CCEEECCSSCCCCCG
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccc-hhhhcCCC---CCEEECCCCCCCCCc
Confidence 00 12368899999999999987 999999999999999999664 45655555 999999999999998
Q ss_pred hhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 177 GALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 177 ~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.+..+++|+.|++++|+++.+. |..++.+++|+.|++++|.++++|+.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 7889999999999999999987 88999999999999999999999875
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=2e-15 Score=110.54 Aligned_cols=135 Identities=18% Similarity=0.207 Sum_probs=105.9
Q ss_pred hhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCC
Q psy17253 63 FQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 142 (227)
Q Consensus 63 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~ 142 (227)
+.... +++.|++++|.+..-+. +.. ..++|+.|++++|.++.+ ..+..+++|+.|++++
T Consensus 15 ~~~~~-~L~~L~l~~n~l~~i~~-------------~~~------~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 15 YTNAV-RDRELDLRGYKIPVIEN-------------LGA------TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp EECTT-SCEEEECTTSCCCSCCC-------------GGG------GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS
T ss_pred cCCcC-CceEEEeeCCCCchhHH-------------hhh------cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC
Confidence 34444 78899999988764110 111 124899999999999988 6688899999999999
Q ss_pred CcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh--hhcCCCCCCEEeCCCCccccCCcc---ccCCCCCCCEEEcCCC
Q psy17253 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTISPD---DFIGLDSLKMLDISHN 217 (227)
Q Consensus 143 n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n 217 (227)
|.++.+++..+..+++ |+.|++++|.+..+|. .+..+++|+.|++++|.+..+... .+..+++|+.||+++|
T Consensus 74 N~l~~~~~~~~~~l~~---L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 74 NRICRIGEGLDQALPD---LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCCCEECSCHHHHCTT---CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcccccCcchhhcCCC---CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999887654455555 9999999999998886 778889999999999999887433 4888999999999988
Q ss_pred cCcc
Q psy17253 218 LLTT 221 (227)
Q Consensus 218 ~l~~ 221 (227)
....
T Consensus 151 ~~~~ 154 (176)
T 1a9n_A 151 KLKE 154 (176)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7543
No 114
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=1.9e-14 Score=105.18 Aligned_cols=108 Identities=20% Similarity=0.280 Sum_probs=92.5
Q ss_pred ccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEeC
Q psy17253 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDL 190 (227)
Q Consensus 112 L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l 190 (227)
-+.+++++|.++.+|..+. .+|+.|++++|.++.+++..+..+++ |+.|++++|+++.+|. .+..+++|+.|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVN---LQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---CCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcC---CCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 4678999999999888664 78999999999999988877766666 9999999999998885 4578899999999
Q ss_pred CCCccccCCccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 191 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
++|+++.+.+..|..+++|+.|++++|++...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9999999877779999999999999999876654
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=4e-15 Score=105.84 Aligned_cols=103 Identities=21% Similarity=0.228 Sum_probs=69.0
Q ss_pred CCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCC
Q psy17253 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLS 186 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~ 186 (227)
+++|+.|++++|.++.+ ..+..+++|+.|++++|.++...+..+..+++ |+.|++++|.++.++ ..+..+++|+
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN---LTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---CCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC---CCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 46677777777777766 55667777777777777776643333333333 777777777777654 5566777777
Q ss_pred EEeCCCCccccCCc---cccCCCCCCCEEEcC
Q psy17253 187 RLDLSHNKLRTISP---DDFIGLDSLKMLDIS 215 (227)
Q Consensus 187 ~l~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 215 (227)
.|++++|+++.+.+ ..+..+++|+.|+++
T Consensus 117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777777644 456677777777664
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.3e-15 Score=123.95 Aligned_cols=179 Identities=23% Similarity=0.313 Sum_probs=104.8
Q ss_pred CccEEEeCCCCCCCCCh----hhhhcccccccEEEccCCCCCC-CCCCC----------------CCCCCCCCcchhhch
Q psy17253 44 DSISLKIAVSNLNDLPS----KTFQELGLQIVNLKLTKNNLRP-DGAAL----------------RPIDVCAPPSTLDNL 102 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~n~~~~-~~~~~----------------~~~~l~~~~~~~~~~ 102 (227)
++++|++++|.++.++. .+|..++.+|+.|++++|.+.. ....+ +.|.+... ....+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK--SSDEL 100 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS--CHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH--HHHHH
Confidence 47777777777776665 5555553257777777777654 22111 11111111 11122
Q ss_pred hhhhcCC-CcccEEEccCCCcccccc-----cccCC-CCCCEEEcCCCcCcccCCCCCCC-CCCC-CcccEEEcCCCCCc
Q psy17253 103 KNQVQGV-TNIFELKLQHNEIENLDG-----ALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSV-TNIFELKLQHNEIE 173 (227)
Q Consensus 103 ~~~~~~l-~~L~~L~l~~n~l~~l~~-----~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~~~-~~L~~l~l~~n~~~ 173 (227)
...+... ++|+.|++++|.++..+. .+..+ .+|+.|++++|.++......+.. +..+ ++|+.|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2233344 678888888888876532 23343 57888888888877433222110 1111 24888888888887
Q ss_pred Cch-h----hhcCC-CCCCEEeCCCCccccCC----ccccCC-CCCCCEEEcCCCcCcccCC
Q psy17253 174 NLD-G----ALMGI-HGLSRLDLSHNKLRTIS----PDDFIG-LDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 174 ~~~-~----~~~~~-~~L~~l~l~~n~l~~~~----~~~~~~-~~~L~~L~l~~n~l~~lp~ 224 (227)
... . .+... ++|+.|++++|.+.... +..+.. .++|+.|++++|.++..+.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 443 2 33444 48888888888887743 233444 3578889999888877653
No 117
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.9e-14 Score=104.72 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=93.2
Q ss_pred cccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh-hhcCCCCCCEEe
Q psy17253 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG-ALMGIHGLSRLD 189 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~ 189 (227)
..+.+++++|.++.+|..+. .+|+.|++++|.++.+++..+..+.+ |+.|++++|+++.++. .+..+++|+.|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~---L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQ---LTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTT---CSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCccc---CCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 46789999999999987663 78999999999999988877776666 9999999999998874 457889999999
Q ss_pred CCCCccccCCccccCCCCCCCEEEcCCCcCcccC
Q psy17253 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 190 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+++|+++.+.+..|..+++|+.|++++|+++-.+
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999998888999999999999999886544
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.2e-14 Score=103.34 Aligned_cols=111 Identities=25% Similarity=0.350 Sum_probs=97.3
Q ss_pred CCcccEEEccCCCcc--cccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-chhhhcCCCCC
Q psy17253 109 VTNIFELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGL 185 (227)
Q Consensus 109 l~~L~~L~l~~n~l~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~L 185 (227)
.++++.|++++|.++ .+|..+..+++|+.|++++|.++.. ..+..+ ++|+.|++++|.++. +|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL---NKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC---TTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC---CCCCEEECCCCcccchHHHHhhhCCCC
Confidence 478999999999999 6888889999999999999999877 344444 459999999999997 77777779999
Q ss_pred CEEeCCCCccccCC-ccccCCCCCCCEEEcCCCcCcccCC
Q psy17253 186 SRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 186 ~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+.|++++|+++.+. +..+..+++|+.|++++|.++++|+
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999999863 3788999999999999999999886
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=2.3e-15 Score=132.76 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=82.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI 122 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 122 (227)
+++.|++.++.+..++.. .++.++++++.+.. .. ..+.+...+ ..+..+..|+.|+|++|.+
T Consensus 174 ~~~~l~L~~n~~~~~~~~-------~l~~l~Ls~~~i~~~~~---~~n~~~~~~-------~~~~~l~~L~~L~Ls~n~l 236 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQA-------LLQHKKLSQYSIDEDDD---IENRMVMPK-------DSKYDDQLWHALDLSNLQI 236 (727)
T ss_dssp -----------------------------------------------------------------CCCCCCEEECTTSCC
T ss_pred ccceEEeeCCCCCcchhh-------HhhcCccCcccccCccc---cccceecCh-------hhhccCCCCcEEECCCCCC
Confidence 467777777777665443 23444455555443 10 111111111 2223456788888888888
Q ss_pred ccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCccc
Q psy17253 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202 (227)
Q Consensus 123 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 202 (227)
..+|..+..+++|+.|+|++|.++.++ ..+..+.+ |+.|+|++|.++.+|..+..+.+|+.|++++|.++.+ |..
T Consensus 237 ~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~---L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l-p~~ 311 (727)
T 4b8c_D 237 FNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSN---LRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL-PWE 311 (727)
T ss_dssp SCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTT---CCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC-CSS
T ss_pred CCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCC---CCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc-Chh
Confidence 777776777788888888888877543 34444444 8888888888887777777778888888888888766 445
Q ss_pred cCCCCCCCEEEcCCCcCcccC
Q psy17253 203 FIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 203 ~~~~~~L~~L~l~~n~l~~lp 223 (227)
|+.+++|+.|++++|.+++.+
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHH
T ss_pred hhcCCCccEEeCCCCccCCCC
Confidence 777888888888888877544
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=3.7e-16 Score=137.77 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=85.4
Q ss_pred CChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCC
Q psy17253 58 LPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS 136 (227)
Q Consensus 58 ~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~ 136 (227)
++...|..+. .|+.|++++|.+.. +...| .+++|+.|+|++|.|+.+|..|..+++|+
T Consensus 215 ~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~--------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 215 MPKDSKYDDQ-LWHALDLSNLQIFNISANIF--------------------KYDFLTRLYLNGNSLTELPAEIKNLSNLR 273 (727)
T ss_dssp -------CCC-CCCEEECTTSCCSCCCGGGG--------------------GCCSCSCCBCTTSCCSCCCGGGGGGTTCC
T ss_pred cChhhhccCC-CCcEEECCCCCCCCCChhhc--------------------CCCCCCEEEeeCCcCcccChhhhCCCCCC
Confidence 4566777787 89999999988775 43333 25778888888888888888888888888
Q ss_pred EEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCcc
Q psy17253 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 201 (227)
Q Consensus 137 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 201 (227)
+|+|++|.++.+ +..+..+.+ |+.|+|++|.++.+|..+..+++|+.|++++|.++...+.
T Consensus 274 ~L~Ls~N~l~~l-p~~~~~l~~---L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 274 VLDLSHNRLTSL-PAELGSCFQ---LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EEECTTSCCSSC-CSSGGGGTT---CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EEeCcCCcCCcc-ChhhcCCCC---CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 888888888855 444544444 8888888888888887688888888888888888764443
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=3.7e-14 Score=114.77 Aligned_cols=153 Identities=19% Similarity=0.304 Sum_probs=87.7
Q ss_pred cEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc
Q psy17253 46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN 124 (227)
Q Consensus 46 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 124 (227)
+.++.++++++++|.+.. . +++.|++++|+++. +..+|.. +++|+.|+|++|.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~-~l~~L~Ls~N~i~~i~~~~f~~-------------------l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---R-NAIELRFVLTKLRVIQKGAFSG-------------------FGDLEKIEISQNDVLE 68 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---T-TCSEEEEESCCCSEECTTSSTT-------------------CTTCCEEEEECCTTCC
T ss_pred CEEEecCCCCCccCcCcC---C-CCCEEEccCCcCCCcCHHHHcC-------------------CCCCCEEECcCCCCCC
Confidence 578899999999997542 3 79999999999998 8777753 3455555555555432
Q ss_pred -cc-ccccCCCCCCE-EEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCc-------------------------Cch
Q psy17253 125 -LD-GALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-------------------------NLD 176 (227)
Q Consensus 125 -l~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~-------------------------~~~ 176 (227)
++ ..|..+++++. +.+..|.++.++++.+..+++ |+.|++++|.++ .++
T Consensus 69 ~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~---L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN---LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT---CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ccChhHhhcchhhhhhhcccCCcccccCchhhhhccc---cccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 32 23444444433 223344455544444443333 444555444444 343
Q ss_pred -hhhcCC-CCCCEEeCCCCccccCCccccCCCCCCCEEEcC-CCcCcccCCC
Q psy17253 177 -GALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS-HNLLTTLEET 225 (227)
Q Consensus 177 -~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~lp~~ 225 (227)
..+..+ ..++.|++++|+++.+.+.+|. ..+++.+++. +|.++.+|++
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHH
Confidence 222222 2355666667766666554443 3456666665 3566666654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.4e-14 Score=114.02 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=31.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRP 89 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~ 89 (227)
+|+.|++.. .+..++..+|.++. +|+.|++.+|.+.. +..+|..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~-~L~~l~l~~n~i~~i~~~aF~~ 146 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCD-NLKICQIRKKTAPNLLPEALAD 146 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCT-TCCEEEBCCSSCCEECTTSSCT
T ss_pred CCcEEECCc-cccchhHHHhhcCc-ccceEEcCCCCccccchhhhcC
Confidence 577777777 67777777777776 77777777777777 6666643
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.8e-15 Score=124.00 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=119.9
Q ss_pred CccEEEeCCCCCCCC----ChhhhhcccccccEEEccCCCCCC-CC-------------------CCC-----CCCCCCC
Q psy17253 44 DSISLKIAVSNLNDL----PSKTFQELGLQIVNLKLTKNNLRP-DG-------------------AAL-----RPIDVCA 94 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~n~~~~-~~-------------------~~~-----~~~~l~~ 94 (227)
+|++|++++|.+... ....+..++ +|+.|++++|.+.. .. ..+ +.|.+.
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~- 172 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE- 172 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-
Confidence 799999999999873 334567777 99999999999863 11 112 222221
Q ss_pred CcchhhchhhhhcCCCcccEEEccCCCccc-----c-cccccCCCCCCEEEcCCCcCc----ccCCCCCCCCCCCCcccE
Q psy17253 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN-----L-DGALMGIHGLSRLDLSHNKLR----TISPDDFIGLDSVTNIFE 164 (227)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l-~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~~~~L~~ 164 (227)
...+..+...+..+++|+.|++++|.++. + +..+..+++|+.|++++|.++ ...+..+..+ ++|+.
T Consensus 173 -~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~---~~L~~ 248 (386)
T 2ca6_A 173 -NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW---PNLRE 248 (386)
T ss_dssp -GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC---TTCCE
T ss_pred -cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC---CCcCE
Confidence 01233333445567889999999998872 2 436778889999999999885 2222233333 44899
Q ss_pred EEcCCCCCcCc-----hhhh--cCCCCCCEEeCCCCcccc-----CCcccc-CCCCCCCEEEcCCCcCcccC
Q psy17253 165 LKLQHNEIENL-----DGAL--MGIHGLSRLDLSHNKLRT-----ISPDDF-IGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 165 l~l~~n~~~~~-----~~~~--~~~~~L~~l~l~~n~l~~-----~~~~~~-~~~~~L~~L~l~~n~l~~lp 223 (227)
|++++|.++.. +..+ ..+++|+.|++++|.++. + +..+ ..+++|+.|++++|.++...
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l-~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL-KTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH-HHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH-HHHHHhcCCCceEEEccCCcCCcch
Confidence 99999988743 4445 337889999999999887 4 4444 56788999999999887654
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=6.4e-15 Score=119.81 Aligned_cols=174 Identities=20% Similarity=0.209 Sum_probs=101.7
Q ss_pred CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCC-CCC-----------CC-----CCCCCCCCcchhhc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRP-DGA-----------AL-----RPIDVCAPPSTLDN 101 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~-~~~-----------~~-----~~~~l~~~~~~~~~ 101 (227)
++++|++++|.++......+..+ + +|+.|++++|.+.. ... .+ +.|.+...+ ...
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS--SSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--HHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCC-CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH--HHH
Confidence 57778888887777766666654 5 77778888777765 321 11 222222211 112
Q ss_pred hhhhhcCC-CcccEEEccCCCccc-----ccccccCCC-CCCEEEcCCCcCcccCCCCCCC-CCCC-CcccEEEcCCCCC
Q psy17253 102 LKNQVQGV-TNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFIG-LDSV-TNIFELKLQHNEI 172 (227)
Q Consensus 102 ~~~~~~~l-~~L~~L~l~~n~l~~-----l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~-~~~~-~~L~~l~l~~n~~ 172 (227)
+...+..+ ++|+.|++++|.++. ++..+..++ +|+.|++++|.++...+..+.. +..+ ++|+.|++++|.+
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 22223332 478888888887773 344455554 7888888888776654332221 1122 2477788888877
Q ss_pred cC-----chhhhcC-CCCCCEEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCc
Q psy17253 173 EN-----LDGALMG-IHGLSRLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 173 ~~-----~~~~~~~-~~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~ 220 (227)
.. ++..+.. .++|+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus 209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 75 4444444 3477788888777766543 23455566666666666533
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=8.7e-14 Score=101.71 Aligned_cols=111 Identities=25% Similarity=0.325 Sum_probs=93.7
Q ss_pred CCCcccEEEccCCCcccccccccCC-CCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhh-hcCCCCC
Q psy17253 108 GVTNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA-LMGIHGL 185 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~L 185 (227)
...+++.|++++|.++.++. +..+ ++|+.|++++|.++.+ ..+..++ +|+.|++++|.++.+|.. +..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~---~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR---RLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS---SCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCC---CCCEEECCCCcccccCcchhhcCCCC
Confidence 35789999999999998865 4444 4999999999999887 3454444 499999999999988844 4889999
Q ss_pred CEEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccCC
Q psy17253 186 SRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEE 224 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp~ 224 (227)
+.|++++|++..++. ..+..+++|+.|++++|+++.+|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 999999999988743 378899999999999999998875
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=2.2e-13 Score=99.51 Aligned_cols=90 Identities=18% Similarity=0.300 Sum_probs=46.4
Q ss_pred ccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEE
Q psy17253 37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115 (227)
Q Consensus 37 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L 115 (227)
+|..++.+++.|++++|.|..+++..|..++ +|+.|++++|+++. +...|. ++++|+.|
T Consensus 27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~-------------------~l~~L~~L 86 (174)
T 2r9u_A 27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFD-------------------KLTQLTQL 86 (174)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-------------------TCTTCCEE
T ss_pred cCCCcCCCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhC-------------------CcchhhEE
Confidence 3333444566666666666666555555555 56666666655554 333332 13445555
Q ss_pred EccCCCcccccc-cccCCCCCCEEEcCCCcCc
Q psy17253 116 KLQHNEIENLDG-ALMGIHGLSRLDLSHNKLR 146 (227)
Q Consensus 116 ~l~~n~l~~l~~-~~~~l~~L~~L~l~~n~l~ 146 (227)
++++|.++.+|. .|..+++|+.|++++|.+.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555555555433 2444555555555555443
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.3e-14 Score=116.59 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=99.7
Q ss_pred CccEEEeCCCCCCCC-ChhhhhcccccccEEEccCCCCCC-CCCCCC-CCCCCCCcc----hhh--chhhhhcCCCcccE
Q psy17253 44 DSISLKIAVSNLNDL-PSKTFQELGLQIVNLKLTKNNLRP-DGAALR-PIDVCAPPS----TLD--NLKNQVQGVTNIFE 114 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-~~~l~~~~~----~~~--~~~~~~~~l~~L~~ 114 (227)
++++|++++|.+... ....+..++ +|+.|++++|.+.. ....+. ...+..+.- .+. .++..+.++++|+.
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 788888888877643 334566676 88888888887764 211111 111111110 011 23444556677777
Q ss_pred EEccCC-Cccc--ccccccCCC-CCCEEEcCCCc--Ccc-cCCCCCCCCCCCCcccEEEcCCCC-Cc-CchhhhcCCCCC
Q psy17253 115 LKLQHN-EIEN--LDGALMGIH-GLSRLDLSHNK--LRT-ISPDDFIGLDSVTNIFELKLQHNE-IE-NLDGALMGIHGL 185 (227)
Q Consensus 115 L~l~~n-~l~~--l~~~~~~l~-~L~~L~l~~n~--l~~-~~~~~~~~~~~~~~L~~l~l~~n~-~~-~~~~~~~~~~~L 185 (227)
|++++| .++. ++..+..++ +|+.|++++|. ++. ..+..+.. +++|+.|++++|. ++ ..+..+..+++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH---CTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh---CCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 777777 7764 455566677 77777777773 331 11112222 3347778888777 54 334556677778
Q ss_pred CEEeCCCCc-cccCCccccCCCCCCCEEEcCCC
Q psy17253 186 SRLDLSHNK-LRTISPDDFIGLDSLKMLDISHN 217 (227)
Q Consensus 186 ~~l~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n 217 (227)
+.|++++|. +.......++.+++|+.|++++|
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 888888774 32222235667777888888777
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=1.2e-14 Score=119.03 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=117.9
Q ss_pred CccEEEeCCCCCCCCC----hhh------hhcccccccEEEccCCCCCC-CCC----CC-----------CCCCCCCCcc
Q psy17253 44 DSISLKIAVSNLNDLP----SKT------FQELGLQIVNLKLTKNNLRP-DGA----AL-----------RPIDVCAPPS 97 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~----~~~------~~~~~~~L~~L~l~~n~~~~-~~~----~~-----------~~~~l~~~~~ 97 (227)
+++.|++++|.+..+. ... +..++ +|+.|++++|.+.. ... .+ +.+.+.. .
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~--~ 137 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP--Q 137 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--H
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH--H
Confidence 7999999998777553 221 35666 99999999999875 111 11 2222110 0
Q ss_pred hhhchhhhhcCC---------CcccEEEccCCCccc--cc---ccccCCCCCCEEEcCCCcCcc-----cCCCCCCCCCC
Q psy17253 98 TLDNLKNQVQGV---------TNIFELKLQHNEIEN--LD---GALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDS 158 (227)
Q Consensus 98 ~~~~~~~~~~~l---------~~L~~L~l~~n~l~~--l~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~ 158 (227)
....+...+..+ ++|+.|++++|.++. ++ ..+..+++|+.|++++|.++. +.+..+. .
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~---~ 214 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---Y 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---G
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---c
Confidence 111222223233 789999999998863 34 456678899999999998872 2222333 3
Q ss_pred CCcccEEEcCCCCC-----cCchhhhcCCCCCCEEeCCCCccccCC----cccc--CCCCCCCEEEcCCCcCcc
Q psy17253 159 VTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTIS----PDDF--IGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 159 ~~~L~~l~l~~n~~-----~~~~~~~~~~~~L~~l~l~~n~l~~~~----~~~~--~~~~~L~~L~l~~n~l~~ 221 (227)
+++|+.|++++|.+ ..++..+..+++|+.|++++|.++... +..+ +.+++|+.|++++|.++.
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 44599999999998 456677788899999999999987652 3444 348899999999999887
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=3.1e-13 Score=98.31 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=43.6
Q ss_pred CCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEc
Q psy17253 39 DRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKL 117 (227)
Q Consensus 39 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l 117 (227)
..+...++.|++++|.|..++...|..++ +|+.|++++|++.. ++..|. ++++|+.|++
T Consensus 26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~-------------------~l~~L~~L~L 85 (170)
T 3g39_A 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFD-------------------KLTQLTQLSL 85 (170)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTT-------------------TCTTCCEEEC
T ss_pred ccCCCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhcc-------------------CCCCCCEEEC
Confidence 33334556666666666665555555555 55555555555554 333332 1344555555
Q ss_pred cCCCcccccc-cccCCCCCCEEEcCCCcC
Q psy17253 118 QHNEIENLDG-ALMGIHGLSRLDLSHNKL 145 (227)
Q Consensus 118 ~~n~l~~l~~-~~~~l~~L~~L~l~~n~l 145 (227)
++|.++.++. .|..+++|+.|++++|.+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 5555554432 344444555555555444
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=2.4e-13 Score=109.13 Aligned_cols=176 Identities=15% Similarity=0.189 Sum_probs=109.3
Q ss_pred chhhcccCCCCC--CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC----CCC-CCCCCC-CCCCC---------C
Q psy17253 32 QVVDALQDRFGN--DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN----LRP-DGAALR-PIDVC---------A 94 (227)
Q Consensus 32 ~~~~~~~~~~~~--~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~----~~~-~~~~~~-~~~l~---------~ 94 (227)
.+..+...+|.. +|+.|++.+|.+..++..+|.+.. ++..+....+. ... ....|. +..+. .
T Consensus 111 ~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~-~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~ 189 (329)
T 3sb4_A 111 KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSV-TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGK 189 (329)
T ss_dssp TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTT-CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCC
T ss_pred cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCC-ceEEecCcchhhhhccccccccccccccccceeEEecCCCc
Confidence 455555666766 899999999999999999998765 67666655422 112 222231 11111 0
Q ss_pred Ccchhh---------------------chhhhhcCCCcccEEEccCCCccccc-ccccCCCCCCEEEcCCCcCcccCCCC
Q psy17253 95 PPSTLD---------------------NLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDD 152 (227)
Q Consensus 95 ~~~~~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 152 (227)
++..+. ....+...+++|+.+++++|.++.++ ..|..+.+|+.+++.+| +..+....
T Consensus 190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a 268 (329)
T 3sb4_A 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV 268 (329)
T ss_dssp HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence 000000 00011112567777777777777773 45667777777777776 66676666
Q ss_pred CCCCCCCCccc-EEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEE
Q psy17253 153 FIGLDSVTNIF-ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213 (227)
Q Consensus 153 ~~~~~~~~~L~-~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~ 213 (227)
|.++.+ |+ .+++.. .++.++ ..+.++.+|+.+++.+|++..+...+|.++++|+.++
T Consensus 269 F~~~~~---L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 FSNCGR---LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTT---CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhCChh---ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 666665 76 777766 566665 5566777777777777777777777777777777665
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=5.6e-14 Score=112.77 Aligned_cols=174 Identities=21% Similarity=0.199 Sum_probs=118.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCC-CCCC--CCC------CCCCCCCCCC-cchhhchhhhhcCCC-cc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKN-NLRP--DGA------ALRPIDVCAP-PSTLDNLKNQVQGVT-NI 112 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n-~~~~--~~~------~~~~~~l~~~-~~~~~~~~~~~~~l~-~L 112 (227)
++++|++++|.+.......+..++ +|+.|++++| .++. .+. .+....+... .-.-..++..+..++ +|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 799999999988866666777787 9999999998 5653 111 1111122221 111112455566788 99
Q ss_pred cEEEccCCC--cc--cccccccCCCCCCEEEcCCCc-CcccCCCCCCCCCCCCcccEEEcCCCC-CcCch-hhhcCCCCC
Q psy17253 113 FELKLQHNE--IE--NLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKLQHNE-IENLD-GALMGIHGL 185 (227)
Q Consensus 113 ~~L~l~~n~--l~--~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~-~~~~~~~~L 185 (227)
+.|++++|. ++ .++..+..+++|+.|++++|. ++......+..+ ++|+.|++++|. +.... ..+..+++|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL---NYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC---TTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC---CCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 999999994 43 467777889999999999998 665544455444 459999999995 32211 346788999
Q ss_pred CEEeCCCCccccCCccccCCC-CCCCEEEcCCCcCcccCCC
Q psy17253 186 SRLDLSHNKLRTISPDDFIGL-DSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~lp~~ 225 (227)
+.|++++| +.. ..+..+ ..+..|++++|.++++.+.
T Consensus 275 ~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 275 KTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 99999999 433 233333 2366677899999887654
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=5.7e-13 Score=114.34 Aligned_cols=145 Identities=23% Similarity=0.226 Sum_probs=111.0
Q ss_pred CccEEE-eCCCCCCCCChhh-----hhccc-ccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCcccEE
Q psy17253 44 DSISLK-IAVSNLNDLPSKT-----FQELG-LQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115 (227)
Q Consensus 44 ~l~~L~-l~~~~l~~~~~~~-----~~~~~-~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L 115 (227)
+|+.|+ ++.+.+..++... +..++ ..|+.|++++|.+++ |. +..+++|+.|
T Consensus 410 ~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~---------------------~~~l~~L~~L 468 (567)
T 1dce_A 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---------------------LEQLLLVTHL 468 (567)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC---------------------GGGGTTCCEE
T ss_pred hcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC---------------------ccccccCcEe
Confidence 577777 5655544333211 11111 158899999999875 21 1235889999
Q ss_pred EccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc--hhhhcCCCCCCEEeCCCC
Q psy17253 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHN 193 (227)
Q Consensus 116 ~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n 193 (227)
++++|.++.+|..+..+++|+.|++++|.+++++ .+..+++ |+.|++++|.++.+ |..+..+++|+.|++++|
T Consensus 469 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~---L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 469 DLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPR---LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp ECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSS---CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred ecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCC---CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 9999999999999999999999999999999865 5555555 99999999999988 788899999999999999
Q ss_pred ccccCCcc---ccCCCCCCCEEEc
Q psy17253 194 KLRTISPD---DFIGLDSLKMLDI 214 (227)
Q Consensus 194 ~l~~~~~~---~~~~~~~L~~L~l 214 (227)
+++.+++. .+..+++|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 99987542 2344788888864
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=6.3e-16 Score=115.34 Aligned_cols=149 Identities=23% Similarity=0.267 Sum_probs=114.4
Q ss_pred CccEEEeCCC--CCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVS--NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~--~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
.++.+.+.+. .+..++. .|..++ +|+.|++++|.+.. +| .+ .++++|+.|++++|.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~-~L~~L~ls~n~l~~------------l~-~~-------~~l~~L~~L~l~~n~ 81 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLK-ACKHLALSTNNIEK------------IS-SL-------SGMENLRILSLGRNL 81 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTT-TCSEEECSEEEESC------------CC-CH-------HHHTTCCEEEEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCC-CCCEEECCCCCCcc------------cc-cc-------ccCCCCCEEECCCCC
Confidence 4566666554 4555655 688887 99999999999774 12 22 235789999999999
Q ss_pred cccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchh--hhcCCCCCCEEeCCCCccccCC
Q psy17253 122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKLRTIS 199 (227)
Q Consensus 122 l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~l~~~~ 199 (227)
++.+|..+..+++|+.|++++|.++.++ .+. .+++|+.|++++|.++.++. .+..+++|+.|++++|.+....
T Consensus 82 l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~---~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 82 IKKIENLDAVADTLEELWISYNQIASLS--GIE---KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp ECSCSSHHHHHHHCSEEEEEEEECCCHH--HHH---HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred cccccchhhcCCcCCEEECcCCcCCcCC--ccc---cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 9999887777789999999999998864 333 34459999999999998764 6788999999999999986653
Q ss_pred cc----------ccCCCCCCCEEEcCCCcCcc
Q psy17253 200 PD----------DFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 200 ~~----------~~~~~~~L~~L~l~~n~l~~ 221 (227)
+. .+..+++|+.|| +|.++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 32 377889999887 666654
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=3.9e-12 Score=102.59 Aligned_cols=101 Identities=28% Similarity=0.391 Sum_probs=48.5
Q ss_pred EEccCC-CcccccccccCCCCCCEEEcCC-CcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCC
Q psy17253 115 LKLQHN-EIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 191 (227)
Q Consensus 115 L~l~~n-~l~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~ 191 (227)
++++++ .++.+|. +..+.+|+.|+|++ |.++.+++..|..+.+ |+.|+|++|+++.++ ..+..+++|+.|+|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~---L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGE---LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCC---CSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccC---CCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344444 4555544 44445555555553 5555544444433333 555555555555443 234445555555555
Q ss_pred CCccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 192 HNKLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 192 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+|+++.+++..|..++ |+.|++.+|.++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5555554444444433 555555555443
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=2.3e-13 Score=113.66 Aligned_cols=62 Identities=24% Similarity=0.263 Sum_probs=38.4
Q ss_pred CcccEEEcCCCCCcCch-hhh----c-CCCCCCEEeCCCCcccc----CCccccCCCCCCCEEEcCCCcCcc
Q psy17253 160 TNIFELKLQHNEIENLD-GAL----M-GIHGLSRLDLSHNKLRT----ISPDDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 160 ~~L~~l~l~~n~~~~~~-~~~----~-~~~~L~~l~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~ 221 (227)
++|+.|++++|.++... ..+ . ..++|+.|++++|+++. ..+..+..+++|+.|++++|.++.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 34777777777665432 222 1 14577777777777763 224556667777777877777654
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.2e-15 Score=111.47 Aligned_cols=137 Identities=23% Similarity=0.247 Sum_probs=105.4
Q ss_pred cccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCccc
Q psy17253 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 148 (227)
Q Consensus 69 ~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~ 148 (227)
.++.++++.+.+.. ....+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+
T Consensus 19 ~l~~l~l~~~~l~~-----~~~~l~~l~~-------~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l 85 (198)
T 1ds9_A 19 SVVATEAEKVELHG-----MIPPIEKMDA-------TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI 85 (198)
T ss_dssp CCCCTTCSEEECCB-----CCTTCCCCHH-------HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC
T ss_pred cccCcchheeEecc-----ccCcHhhhhH-------HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc
Confidence 56666666666553 1112333333 3344689999999999999988 788899999999999999865
Q ss_pred CCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCCCEEeCCCCccccCCc-cccCCCCCCCEEEcCCCcCcccC
Q psy17253 149 SPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLE 223 (227)
Q Consensus 149 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~lp 223 (227)
+. .+.. +++|+.|++++|.++.+| .+..+++|+.|++++|+++.+.. ..+..+++|+.|++++|++...+
T Consensus 86 ~~-~~~~---~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 86 EN-LDAV---ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp SS-HHHH---HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred cc-hhhc---CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 42 3322 345999999999999887 47788899999999999998743 57889999999999999986653
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=1.8e-11 Score=100.71 Aligned_cols=180 Identities=15% Similarity=0.211 Sum_probs=111.8
Q ss_pred cCCCCC-CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCC--Ccchhhchhh-hhcCCCcc
Q psy17253 38 QDRFGN-DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCA--PPSTLDNLKN-QVQGVTNI 112 (227)
Q Consensus 38 ~~~~~~-~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~--~~~~~~~~~~-~~~~l~~L 112 (227)
...|.. .|+.+.+.. .+..++..+|.++. +|+.+++.+|.+.. +...|.+..+.. +|..+..+.. .+.++.+|
T Consensus 151 ~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L 228 (401)
T 4fdw_A 151 DMAFFNSTVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQL 228 (401)
T ss_dssp TTTTTTCCCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTC
T ss_pred HHhcCCCCceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCC
Confidence 334444 566666664 46667767777776 77777777777766 666665443332 2333332221 22334445
Q ss_pred cEEEccC---------------------CCcccc-cccccCCCCCCEEEcCCCcCc-----ccCCCCCCCCCCCCcccEE
Q psy17253 113 FELKLQH---------------------NEIENL-DGALMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSVTNIFEL 165 (227)
Q Consensus 113 ~~L~l~~---------------------n~l~~l-~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~~~~L~~l 165 (227)
+.+.+.. +.++.+ ..+|..+.+|+.+.+.+|.+. .+....|.++.+ |+.+
T Consensus 229 ~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~---L~~l 305 (401)
T 4fdw_A 229 KTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK---LARF 305 (401)
T ss_dssp CCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT---CCEE
T ss_pred CEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc---CCeE
Confidence 5555443 223444 445667777777777766554 456666666655 7777
Q ss_pred EcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 166 ~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
.+. +.++.++ ..+.++.+|+.+.+.. .++.+...+|..+ +|+.+++.+|.+..++..
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 777 4466676 5567778888888844 4777777888888 888888888877666543
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.34 E-value=6.9e-13 Score=110.79 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=107.4
Q ss_pred CccEEEeCCCCCCCCC----hhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCC----cccEE
Q psy17253 44 DSISLKIAVSNLNDLP----SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVT----NIFEL 115 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~----~L~~L 115 (227)
+++.|++++|.+.... ...+..++ +|+.|++++|.+.. .....+...+. +|+.|
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~-----------------~~~~~l~~~l~~~~~~L~~L 90 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGD-----------------VGVHCVLQGLQTPSCKIQKL 90 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHH-----------------HHHHHHHHTTCSTTCCCCEE
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCCh-----------------HHHHHHHHHHhhCCCceeEE
Confidence 5777777777776432 23344455 77777777777542 01111222233 69999
Q ss_pred EccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC--CCCCCcccEEEcCCCCCcC-----chhhhcCCC
Q psy17253 116 KLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIFELKLQHNEIEN-----LDGALMGIH 183 (227)
Q Consensus 116 ~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~l~l~~n~~~~-----~~~~~~~~~ 183 (227)
++++|.++. ++..+..+++|+.|++++|.++......+.. ....++|+.|++++|.++. ++..+..++
T Consensus 91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 170 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCT
T ss_pred EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCC
Confidence 999998883 4777888899999999999886543222211 1123348999999998874 344556778
Q ss_pred CCCEEeCCCCccccCCccccC-----CCCCCCEEEcCCCcCcc
Q psy17253 184 GLSRLDLSHNKLRTISPDDFI-----GLDSLKMLDISHNLLTT 221 (227)
Q Consensus 184 ~L~~l~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~ 221 (227)
+|+.|++++|.+.......+. ..+.|+.|++++|.++.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 999999999998765433332 35689999999998876
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=4.5e-13 Score=109.29 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred CccEEEeCCCCCCCCChhhhhcc-----cccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEcc
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQEL-----GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQ 118 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 118 (227)
.++.|++++|.++......+... . .|+.|++++|.+.. .....+...+++|+.|+|+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~-----------------~~~~~l~~~L~~L~~L~Ls 134 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDP-----------------AGLRTLLPVFLRARKLGLQ 134 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCH-----------------HHHHHTHHHHHTEEEEECC
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCH-----------------HHHHHHHHHHHhccHhhcC
Confidence 68999999999987665555554 4 79999999998753 1111122234578888888
Q ss_pred CCCcccc-----cccc-cCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCC
Q psy17253 119 HNEIENL-----DGAL-MGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENL-----DGALMGIHGLS 186 (227)
Q Consensus 119 ~n~l~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~ 186 (227)
+|.++.. ...+ ...++|+.|++++|.++......+. .+...++|+.|++++|.+... ...+...++|+
T Consensus 135 ~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 135 LNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp SSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 8888653 2222 2456788888888887653222221 112334488888888887642 34455667788
Q ss_pred EEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCcc
Q psy17253 187 RLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLTT 221 (227)
Q Consensus 187 ~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~ 221 (227)
.|++++|.++.... .++...+.|+.|++++|.++.
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 88888888875432 334456778888888887754
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.2e-11 Score=97.20 Aligned_cols=101 Identities=25% Similarity=0.315 Sum_probs=77.0
Q ss_pred EEEecCCCCccchhhcccCCCCC--CccEEEeCC-CCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCc
Q psy17253 21 VVECEKMTSFGQVVDALQDRFGN--DSISLKIAV-SNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPP 96 (227)
Q Consensus 21 ~~~c~~~~~~~~~~~~~~~~~~~--~l~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~ 96 (227)
.+.|.... ++. .+|. ++. +|+.|+|++ |.|..++...|..+. +|+.|++++|++.+ ++..|.
T Consensus 12 ~v~~~~~n---~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~-------- 77 (347)
T 2ifg_A 12 GLRCTRDG---ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFH-------- 77 (347)
T ss_dssp CEECCSSC---CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGG--------
T ss_pred EEEcCCCC---CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhc--------
Confidence 57886521 233 3455 555 699999996 999999998999998 99999999999887 665553
Q ss_pred chhhchhhhhcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCc
Q psy17253 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 146 (227)
Q Consensus 97 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~ 146 (227)
++++|+.|+|++|.|+.+|..+.....|+.|++.+|.+.
T Consensus 78 -----------~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 78 -----------FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp -----------SCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred -----------CCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 358899999999999988664444334999999998875
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=2.6e-11 Score=98.88 Aligned_cols=162 Identities=20% Similarity=0.223 Sum_probs=107.8
Q ss_pred CCccEEEeCCCCCCCCChhhh-hcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhh-cCCCcccEEEccCC
Q psy17253 43 NDSISLKIAVSNLNDLPSKTF-QELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV-QGVTNIFELKLQHN 120 (227)
Q Consensus 43 ~~l~~L~l~~~~l~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n 120 (227)
..++.|++++|.++......+ ..+. +|+.|++++|.+.. .....+...+ ...++|+.|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~--------------~~~~~L~~~L~~~~~~L~~L~Ls~n 165 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGP--------------EACKDLRDLLLHDQCQITTLRLSNN 165 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCH--------------HHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCH--------------HHHHHHHHHHHhcCCccceeeCCCC
Confidence 379999999999876443333 3455 89999999999863 1222222222 23578999999999
Q ss_pred Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCCEEe
Q psy17253 121 EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIENL-----DGALMGIHGLSRLD 189 (227)
Q Consensus 121 ~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~l~ 189 (227)
.++. ++..+..+++|++|+|++|.++......+. .+...+.|+.|++++|.++.. ...+...++|+.|+
T Consensus 166 ~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 166 PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 9975 455667889999999999998764321111 123334599999999999843 33455678899999
Q ss_pred CCCCccccCCccccCCC---C--CCCEEE--cCCCcC
Q psy17253 190 LSHNKLRTISPDDFIGL---D--SLKMLD--ISHNLL 219 (227)
Q Consensus 190 l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~n~l 219 (227)
+++|.|+......+..+ . .++.+. +.++.+
T Consensus 246 Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred ccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 99999986544333322 1 155555 555544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=3.1e-09 Score=87.45 Aligned_cols=172 Identities=20% Similarity=0.293 Sum_probs=89.0
Q ss_pred ccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCC--Ccchhhchh-hhhcCCCcccEEEccCC
Q psy17253 45 SISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCA--PPSTLDNLK-NQVQGVTNIFELKLQHN 120 (227)
Q Consensus 45 l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~--~~~~~~~~~-~~~~~l~~L~~L~l~~n 120 (227)
++.+.+..+ +..++..+|.+ . +|+.+.+..+ +.. ...+|.+..+.. +|..+..+. ..+.++.+|+.++++.|
T Consensus 115 l~~i~ip~~-i~~I~~~aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 115 YNEIILPNS-VKSIPKDAFRN-S-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-C-CCSEEECCTT-CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred ccEEEECCc-cCEehHhhccc-C-CccEEEeCCC-ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence 444444432 45555555554 2 4555555443 444 444554433322 122333222 12334566777777766
Q ss_pred CcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCC---------------------CCCcCch-hh
Q psy17253 121 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH---------------------NEIENLD-GA 178 (227)
Q Consensus 121 ~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~---------------------n~~~~~~-~~ 178 (227)
.++.++.......+|+.+.+.. .+..+....|..+.+ |+.+.+.. +.++.++ ..
T Consensus 191 ~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~---L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~a 266 (401)
T 4fdw_A 191 KITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQ---LKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRA 266 (401)
T ss_dssp CCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTT---CCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTT
T ss_pred cceEechhhEeecccCEEEeCC-chheehhhHhhCCCC---CCEEecCCCccCccccccccCCccEEEeCCCccEEChhH
Confidence 6666543322345566665553 255555555544443 44444433 3344454 44
Q ss_pred hcCCCCCCEEeCCCCccc-----cCCccccCCCCCCCEEEcCCCcCcccCCC
Q psy17253 179 LMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSLKMLDISHNLLTTLEET 225 (227)
Q Consensus 179 ~~~~~~L~~l~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~lp~~ 225 (227)
+.++.+|+.+.+.++.+. .+...+|.++++|+.+++. +.++.|+..
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 566667777777666554 4556677777777777777 346666554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.02 E-value=5.6e-10 Score=96.00 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred CccEEEeCCCC-CCCCC-hhhhhcccccccEEEccCCCCCC-CCC----------CC-----CCCCCCCCcchhhchhhh
Q psy17253 44 DSISLKIAVSN-LNDLP-SKTFQELGLQIVNLKLTKNNLRP-DGA----------AL-----RPIDVCAPPSTLDNLKNQ 105 (227)
Q Consensus 44 ~l~~L~l~~~~-l~~~~-~~~~~~~~~~L~~L~l~~n~~~~-~~~----------~~-----~~~~l~~~~~~~~~~~~~ 105 (227)
++++|++++|. +.... ......++ +|+.|++++|.+.. ... .+ ..+.+..+ ....++..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~~~~l~~~ 215 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--SPKDLETI 215 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--CHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--CHHHHHHH
Confidence 47788887775 21110 11122455 77788888777543 111 00 11111111 12344455
Q ss_pred hcCCCcccEEEccCCCcccccccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCchhhhcCCCCC
Q psy17253 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGL 185 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~L 185 (227)
+..+++|+.|++++|.+..++..+..+++|+.|++...............+..+++|+.++++++....++..+..+++|
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 55678888888888888777777777788888887643221111112222333344666666655444555545555666
Q ss_pred CEEeCCCCccccCCc-cccCCCCCCCEEEcC
Q psy17253 186 SRLDLSHNKLRTISP-DDFIGLDSLKMLDIS 215 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~-~~~~~~~~L~~L~l~ 215 (227)
+.|++++|.++.... ..+..+++|+.|++.
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 666666666433211 223444555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.75 E-value=4.9e-09 Score=90.12 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=68.6
Q ss_pred hhhhhcCCCcccEEEccCCCcccc-----cccccCCCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCCCcCc
Q psy17253 102 LKNQVQGVTNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNEIENL 175 (227)
Q Consensus 102 ~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~ 175 (227)
+..+..++++|+.|++++|.+++. +..+..+++|+.|+++.|.+.......+.. ...+++|+.|++++|.+..+
T Consensus 156 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 334444567788888888776542 223345677888888777765322111110 11234477788887777666
Q ss_pred hhhhcCCCCCCEEeCCCC---------------------------ccccCCccccCCCCCCCEEEcCCCcCc
Q psy17253 176 DGALMGIHGLSRLDLSHN---------------------------KLRTISPDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 176 ~~~~~~~~~L~~l~l~~n---------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~ 220 (227)
+..+..+++|+.++++.. ....+ +..+..+++|+.|++++|.++
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLE 306 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCC
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCC
Confidence 655566666666666532 11111 334556677888888887753
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=9.8e-09 Score=88.21 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=41.9
Q ss_pred CccEEEeCCCCCCCCChhhhh-cccccccEEEccCCC-CCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQ-ELGLQIVNLKLTKNN-LRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 121 (227)
++++|++++|.++......+. .++ +|+.|++++|. +. -..++.+...+++|+.|++++|.
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~-----------------~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGFS-----------------TDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEEE-----------------HHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCCC-----------------HHHHHHHHHhCCCCCEEeCcCCc
Confidence 456666666555433333332 344 56666665552 11 11133333446677777777766
Q ss_pred cccc-----cccccCCCCCCEEEcCCCc
Q psy17253 122 IENL-----DGALMGIHGLSRLDLSHNK 144 (227)
Q Consensus 122 l~~l-----~~~~~~l~~L~~L~l~~n~ 144 (227)
++.. +.....+++|+.|+++++.
T Consensus 168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 168 VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 5542 1222244567777776664
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=4.7e-09 Score=77.11 Aligned_cols=120 Identities=15% Similarity=0.083 Sum_probs=89.4
Q ss_pred chhhhhcCCCcccEEEccCC-Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCCCCc
Q psy17253 101 NLKNQVQGVTNIFELKLQHN-EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIE 173 (227)
Q Consensus 101 ~~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n~~~ 173 (227)
.+...+...++|+.|+|++| .+.. +...+...++|++|+|++|.+.......+. .+...+.|+.|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34555667889999999999 8874 455667788999999999998764322221 1223355999999999998
Q ss_pred C-----chhhhcCCCCCCEEeC--CCCccccCC----ccccCCCCCCCEEEcCCCcCc
Q psy17253 174 N-----LDGALMGIHGLSRLDL--SHNKLRTIS----PDDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 174 ~-----~~~~~~~~~~L~~l~l--~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~ 220 (227)
. +...+...+.|+.|++ ++|.+.... ...+...+.|+.|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 3455677788999999 889997642 245566789999999999874
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=2.3e-08 Score=73.44 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=68.7
Q ss_pred cccEEEccCC-CCCCCCCCCCCCCCCCCcchhhchhhhhcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCC
Q psy17253 69 QIVNLKLTKN-NLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSH 142 (227)
Q Consensus 69 ~L~~L~l~~n-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~ 142 (227)
.|+.|++++| .+.. .....+...+...++|++|+|++|.+.. +...+...++|+.|+|++
T Consensus 37 ~L~~L~L~~n~~i~~--------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 37 DLEEVNLNNIMNIPV--------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp TCCEEECTTCTTCCH--------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred CCCEEEecCCCCCCH--------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 5666666666 5541 2223333334445677777777777764 344455556788888888
Q ss_pred CcCcccCCCCC-CCCCCCCcccEEEc--CCCCCcC-----chhhhcCCCCCCEEeCCCCcccc
Q psy17253 143 NKLRTISPDDF-IGLDSVTNIFELKL--QHNEIEN-----LDGALMGIHGLSRLDLSHNKLRT 197 (227)
Q Consensus 143 n~l~~~~~~~~-~~~~~~~~L~~l~l--~~n~~~~-----~~~~~~~~~~L~~l~l~~n~l~~ 197 (227)
|.+.......+ ..+...+.|+.|++ ++|.+.. +...+...+.|+.|++++|.+..
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 87765321111 12233345888888 7787763 23445556778888888887753
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.47 E-value=3.1e-08 Score=85.13 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=91.4
Q ss_pred CccEEEeCCC-CCCCC-ChhhhhcccccccEEEccCCCCCC-CCCCCC-----CCCCCC-----Cc--chhhchhhhhcC
Q psy17253 44 DSISLKIAVS-NLNDL-PSKTFQELGLQIVNLKLTKNNLRP-DGAALR-----PIDVCA-----PP--STLDNLKNQVQG 108 (227)
Q Consensus 44 ~l~~L~l~~~-~l~~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~-----~~~l~~-----~~--~~~~~~~~~~~~ 108 (227)
++++|++++| .++.. ....+..++ +|+.|++++|.+.. ....+. ...+.. .. .....+..+...
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 7999999998 55542 122334566 89999999998665 222110 001111 10 111233344445
Q ss_pred CCcccEEEccCC-CcccccccccCCCCCCEEEcCCCcC--------------------------cccCCCCCCC-CCCCC
Q psy17253 109 VTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKL--------------------------RTISPDDFIG-LDSVT 160 (227)
Q Consensus 109 l~~L~~L~l~~n-~l~~l~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~-~~~~~ 160 (227)
+++|+.|++++| .++.++..+..+++|+.|++..+.. .......+.. ...++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 677777777776 4444555556666677776543310 0000000110 01234
Q ss_pred cccEEEcCCCCCcCc--hhhhcCCCCCCEEeCCCCccccCC-ccccCCCCCCCEEEc
Q psy17253 161 NIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDI 214 (227)
Q Consensus 161 ~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~L~~L~l 214 (227)
+|+.|++++|.++.. ...+..+++|+.|++++| +.... +.....+++|+.|++
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 588888888876532 233456778888888876 33211 122234677888877
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=3.6e-07 Score=74.02 Aligned_cols=153 Identities=17% Similarity=0.137 Sum_probs=71.8
Q ss_pred CccEEEeCCCCCCC---------CChhhhhcccccccEEEccCCCCCC-CCCCCCCCCCCCCcchhhchhhhhcCCCccc
Q psy17253 44 DSISLKIAVSNLND---------LPSKTFQELGLQIVNLKLTKNNLRP-DGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113 (227)
Q Consensus 44 ~l~~L~l~~~~l~~---------~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~ 113 (227)
+|+.|.+....... -....+..++ .|+.|.++++.-.. +. + ..++|+
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~l~l~~--~--------------------~~~~L~ 196 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNNLSIGK--K--------------------PRPNLK 196 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBTCBCCS--C--------------------BCTTCS
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCCceecc--c--------------------cCCCCc
Confidence 68999887654321 1224456666 89999998873111 11 1 124566
Q ss_pred EEEccCCCcccc-cccc--cCCCCCCEEEcCC--CcCcccC-C----CCCCCCCCCCcccEEEcCCCCCcC-chhhh---
Q psy17253 114 ELKLQHNEIENL-DGAL--MGIHGLSRLDLSH--NKLRTIS-P----DDFIGLDSVTNIFELKLQHNEIEN-LDGAL--- 179 (227)
Q Consensus 114 ~L~l~~n~l~~l-~~~~--~~l~~L~~L~l~~--n~l~~~~-~----~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~--- 179 (227)
.|++..+.++.- ...+ ..+++|+.|+|.. +...+.. . ..+. ...+++|+.|++.+|.+.. .+..+
T Consensus 197 ~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp EEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred EEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 666665554321 1112 2455666665532 1110000 0 0010 0123446666666665542 11111
Q ss_pred cCCCCCCEEeCCCCccccCCc----cccCCCCCCCEEEcCCCcCc
Q psy17253 180 MGIHGLSRLDLSHNKLRTISP----DDFIGLDSLKMLDISHNLLT 220 (227)
Q Consensus 180 ~~~~~L~~l~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~ 220 (227)
..+++|+.|+++.|.+..... ..+..+++|+.|+++.|.++
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 234556666666666554221 11223455666666666543
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.29 E-value=1.7e-05 Score=64.84 Aligned_cols=81 Identities=22% Similarity=0.421 Sum_probs=47.3
Q ss_pred cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCCccccCCCCC
Q psy17253 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208 (227)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~ 208 (227)
..+.+|+.+.+..+ ++.+....|.++.+ |+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.+...+|.++.+
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~---L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTS---LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTT---CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred cccccccccccccc-cceechhhhcCCCC---CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 34455555555433 44555555555544 666666433 55554 45566667777777554 66666667777777
Q ss_pred CCEEEcCC
Q psy17253 209 LKMLDISH 216 (227)
Q Consensus 209 L~~L~l~~ 216 (227)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 77776654
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.26 E-value=2e-06 Score=59.21 Aligned_cols=64 Identities=27% Similarity=0.531 Sum_probs=52.7
Q ss_pred CccccccCCCCCceEEEecCCCCccchhh--cccCCCCCCccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCC
Q psy17253 7 PCTCKCRTSPISPIVVECEKMTSFGQVVD--ALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR 81 (227)
Q Consensus 7 ~~~c~~~~~~~~~~~~~c~~~~~~~~~~~--~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~ 81 (227)
|-.|.|... .|.|.. +-+. .+|..++.+++.|+|++|.|..++.+.|..++ +|+.|++.+|.+.
T Consensus 3 P~~C~C~~~-----~v~Cs~-----~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 3 PAPCSCAGT-----LVDCGR-----RGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPWR 68 (130)
T ss_dssp CTTCEEETT-----EEECCS-----SCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCCB
T ss_pred CCCCEEcCC-----EEEeCC-----CCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCee
Confidence 444777532 799977 3333 67777888999999999999999999999998 9999999999975
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=3.8e-05 Score=62.71 Aligned_cols=106 Identities=17% Similarity=0.346 Sum_probs=79.1
Q ss_pred hcCCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCC
Q psy17253 106 VQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIH 183 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~ 183 (227)
+.+...|+.+.+..+.. .+ ...|..+.+|+.+.+. +.++.+....|.++.+ |+.+.+..+ ++.+. ..+.++.
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~---L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS---LKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT---CCEEECCTT-CCEECTTTTTTCT
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCC---cCEEEeCCc-ccEehHhHhhCCC
Confidence 33556777777765533 33 4567778888888885 4577777777777766 888888754 66775 5677888
Q ss_pred CCCEEeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 184 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 218 (227)
+|+.+.+.. .++.+...+|.++.+|+.+++.++.
T Consensus 335 ~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 999999864 4888888899999999999988764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.9e-06 Score=66.60 Aligned_cols=79 Identities=27% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCCCCCEEEcCCCcCcccCC--CCCCCCCCCCcccEEEcCCCCCcCch--hhhcCCCCCCEEeCCCCccccCCc------
Q psy17253 131 GIHGLSRLDLSHNKLRTISP--DDFIGLDSVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISP------ 200 (227)
Q Consensus 131 ~l~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~l~~~~~------ 200 (227)
.+++|+.|+|++|.++++.. ..+. .+++|+.|+|++|.++.+. ..+..+ +|+.|++++|.+..-.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~---~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQ---KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHH---HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHh---hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 34555666666665554321 1111 2233556666666655442 112222 56666666666543111
Q ss_pred -cccCCCCCCCEEE
Q psy17253 201 -DDFIGLDSLKMLD 213 (227)
Q Consensus 201 -~~~~~~~~L~~L~ 213 (227)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2345556666555
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=3e-05 Score=62.94 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=53.9
Q ss_pred CCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCC
Q psy17253 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLS 186 (227)
Q Consensus 109 l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~ 186 (227)
...|+.+.+..+ ++.+ ...|..+.+|+.+.+.. .+..+....|.++.+ |+.+.+..+.++.++ ..+.++.+|+
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~---L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN---LTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT---CCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc---cccccccccccceehhhhhcCCCCCC
Confidence 345555555543 4444 33445555566665543 244444444444444 556666555555554 3445556666
Q ss_pred EEeCCCCccccCCccccCCCCCCCEEEcCC
Q psy17253 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISH 216 (227)
Q Consensus 187 ~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 216 (227)
.+.+.. .++.+...+|.++.+|+.+.+..
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 666643 25555555666666666555543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=7.9e-06 Score=66.13 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=93.3
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCCCCCCcchhhchhhhh-cCCCcccEEEccC--C
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV-QGVTNIFELKLQH--N 120 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~--n 120 (227)
+|+.|+++++.-..++. +. .+ +|+.|++..+.+.. ..+..+. ..+++|+.|+|+. +
T Consensus 173 ~L~~L~L~g~~~l~l~~--~~-~~-~L~~L~L~~~~l~~-----------------~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK--KP-RP-NLKSLEIISGGLPD-----------------SVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp TCCEEEEECCBTCBCCS--CB-CT-TCSEEEEECSBCCH-----------------HHHHHHHHSBCTTCCEEEEECBCG
T ss_pred CCcEEEEeCCCCceecc--cc-CC-CCcEEEEecCCCCh-----------------HHHHHHHHccCCCCcEEEEecccc
Confidence 69999998873223333 32 44 89999998877642 1111111 2468899998853 1
Q ss_pred C------cccccccc--cCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCc-----hhhhcCCCCCCE
Q psy17253 121 E------IENLDGAL--MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-----DGALMGIHGLSR 187 (227)
Q Consensus 121 ~------l~~l~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~-----~~~~~~~~~L~~ 187 (227)
. +..+...+ ..+++|+.|++.+|.+.......+.....++.|+.|+++.|.+... +..+..+++|+.
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 1 22232223 2468999999998887643222222223456699999999988752 333356788999
Q ss_pred EeCCCCccccCCccccCCCCCCCEEEcCCCc
Q psy17253 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218 (227)
Q Consensus 188 l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 218 (227)
|++++|.++......+...- ...++++.++
T Consensus 312 L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 312 INMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp EECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred EECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 99999988764333333311 2457777765
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=6.7e-05 Score=60.81 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=73.2
Q ss_pred CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCC
Q psy17253 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGL 185 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L 185 (227)
+..+++.+.+..+ ++.+ ...|..+.+|+.+.+..+.++.+....|.++.+ |+.+.+..+ ++.+. ..+.++.+|
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~---L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK---LSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT---CCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC---CCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3567888888654 5566 456788899999999988888888888877777 888888654 77776 567888899
Q ss_pred CEEeCCCCccccCCccccCCCCCC
Q psy17253 186 SRLDLSHNKLRTISPDDFIGLDSL 209 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~~~~~~~~~L 209 (227)
+.+.+..+ ++.+...+|.++..+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CEEEECCc-cCEEchhHhhCCCCC
Confidence 98888654 777777788776543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.00 E-value=6.8e-05 Score=61.23 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=94.9
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCCCCCCCCCCCCCC-CCCCcchhhch-hhhhcCCCcccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPID-VCAPPSTLDNL-KNQVQGVTNIFELKLQHNE 121 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-l~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~ 121 (227)
.++.+.+... +..+...+|.... .++.+.+..+...-....|.... +..+......+ ...+.+..+|+.+.+..+
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~-~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCT-DLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCS-SCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCC-ceecccccccccc-cceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 4555555432 4555556666665 67777666553322444442211 11111100011 122335677888888765
Q ss_pred cccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCccccCC
Q psy17253 122 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTIS 199 (227)
Q Consensus 122 l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l~~~~ 199 (227)
++.+ ..+|..+.+|+.+++.. .++.+...+|.++.+ |+.+.+..+ ++.++ ..+.++.+|+.+++..+ +..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~---L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~- 380 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTS---LSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQY- 380 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTT---CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGG-
T ss_pred cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCC---CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEh-
Confidence 6666 45677888888888864 477777777777766 888888766 66776 56778888888888643 4444
Q ss_pred ccccCCCCCCCEE
Q psy17253 200 PDDFIGLDSLKML 212 (227)
Q Consensus 200 ~~~~~~~~~L~~L 212 (227)
..+|..+.+|+.+
T Consensus 381 ~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGBCTTCEEEEE
T ss_pred hheecCCCCCcEE
Confidence 4567777766653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.96 E-value=5.8e-06 Score=63.93 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=58.8
Q ss_pred cCCCcccEEEccCCCccccc---ccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcC-ch------
Q psy17253 107 QGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LD------ 176 (227)
Q Consensus 107 ~~l~~L~~L~l~~n~l~~l~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~------ 176 (227)
..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.+.++. .+..+..+ .|+.|++++|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 35788999999999888753 55667889999999999988762 33334433 58999999998863 22
Q ss_pred -hhhcCCCCCCEEeC
Q psy17253 177 -GALMGIHGLSRLDL 190 (227)
Q Consensus 177 -~~~~~~~~L~~l~l 190 (227)
..+..+++|+.||-
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 23467788888874
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=8.6e-05 Score=60.61 Aligned_cols=103 Identities=14% Similarity=0.318 Sum_probs=71.6
Q ss_pred CCCcccEEEccCCCcccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCC
Q psy17253 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGL 185 (227)
Q Consensus 108 ~l~~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L 185 (227)
+...|+.+.+. +.++.+ ...|..+.+|+.+.+..+ ++.+....|.++.+ |+.+.+..+ ++.+. ..+.++.+|
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~---L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ---LERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT---CCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC---CCEEEECcc-cCEEhHhHhhCCCCC
Confidence 35788888886 446677 457888899999999864 77787788888777 888998654 77776 577889999
Q ss_pred CEEeCCCCccccCCccccCCCCCCCEEEcCCCcC
Q psy17253 186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219 (227)
Q Consensus 186 ~~l~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 219 (227)
+.+++.++.... .++....+|+.+.+..|.+
T Consensus 360 ~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999875432 3566677888888766543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=6.6e-06 Score=59.44 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=49.2
Q ss_pred cccEEEccCCCcccc-cccccCCCCCCEEEcCCCc-CcccCCCCCCCCCC-CCcccEEEcCCCC-CcCch-hhhcCCCCC
Q psy17253 111 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDS-VTNIFELKLQHNE-IENLD-GALMGIHGL 185 (227)
Q Consensus 111 ~L~~L~l~~n~l~~l-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~~L~~l~l~~n~-~~~~~-~~~~~~~~L 185 (227)
.|+.|+++++.++.. -..+..+++|+.|+|+++. ++......+..+.+ .++|++|+++++. ++.-. ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 577777777776653 2335667777777777764 54432222222210 1247777777764 65432 334556777
Q ss_pred CEEeCCCCc-ccc
Q psy17253 186 SRLDLSHNK-LRT 197 (227)
Q Consensus 186 ~~l~l~~n~-l~~ 197 (227)
+.|+++++. +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 777777763 444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=3.2e-05 Score=56.83 Aligned_cols=118 Identities=11% Similarity=0.175 Sum_probs=83.5
Q ss_pred hhhhhcCCCcccEEEccCC-Cccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCCC-CCCCCcccEEEcCCCCCcC
Q psy17253 102 LKNQVQGVTNIFELKLQHN-EIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSVTNIFELKLQHNEIEN 174 (227)
Q Consensus 102 ~~~~~~~l~~L~~L~l~~n-~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~ 174 (227)
+...+..-+.|+.|+|+++ .|.. +...+..-..|+.|+|++|.+.......++. +...+.|+.|+|++|.|..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3444455678999999985 7763 4556667789999999999998665444432 3345669999999999973
Q ss_pred -----chhhhcCCCCCCEEeCCCCccccCC-------ccccCCCCCCCEEEcCCCcC
Q psy17253 175 -----LDGALMGIHGLSRLDLSHNKLRTIS-------PDDFIGLDSLKMLDISHNLL 219 (227)
Q Consensus 175 -----~~~~~~~~~~L~~l~l~~n~l~~~~-------~~~~~~~~~L~~L~l~~n~l 219 (227)
+.+.+..-..|+.|+++++....+. ..++...+.|+.|+++.|.+
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345566677999999875332221 24556678899999987753
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=6.8e-05 Score=54.10 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=25.0
Q ss_pred CccEEEeCCCCCCCCChhhhhcccccccEEEccCCC
Q psy17253 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNN 79 (227)
Q Consensus 44 ~l~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 79 (227)
+|+.||+++|.++...-..+..++ +|+.|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCC
Confidence 688888888877765555566666 77777777765
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=0.00011 Score=50.37 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=32.4
Q ss_pred EEEcCCCcCc--ccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCCcc
Q psy17253 137 RLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL 195 (227)
Q Consensus 137 ~L~l~~n~l~--~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~l 195 (227)
.++-++++++ .++.. ++ .+++.|+|++|+|+.++ ..+..+.+|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~----lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA----FP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC----CC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC----CC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 44422 11 13667777777777776 3456666777777777765
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.45 E-value=0.00011 Score=54.08 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=56.1
Q ss_pred hcCCCcccEEEccCCCccc-----ccccccCCCCCCEEEcCCCcCcccCCCCCC-CCCCCCcccEEEcCCC---CCcC--
Q psy17253 106 VQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHN---EIEN-- 174 (227)
Q Consensus 106 ~~~l~~L~~L~l~~n~l~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~L~~l~l~~n---~~~~-- 174 (227)
+..-+.|+.|+|++|.|.. +...+..-..|+.|+|++|.|.......+. .+...+.|+.|+++++ .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334678888888888764 344455556788888888888654322221 2344455888888754 3331
Q ss_pred ---chhhhcCCCCCCEEeCCCCcc
Q psy17253 175 ---LDGALMGIHGLSRLDLSHNKL 195 (227)
Q Consensus 175 ---~~~~~~~~~~L~~l~l~~n~l 195 (227)
+...+..-+.|+.|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 233455567788888877654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.70 E-value=11 Score=23.89 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCcCcccCCCCCCCCCCCCcccEEEcCCCCCcCch-hhhcCCCCCCEEeCCCC
Q psy17253 142 HNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193 (227)
Q Consensus 142 ~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n 193 (227)
+..++.+....|.++.. |+.+.+..+ ++.+. ..+.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~---L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTV---IREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTT---CCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCC---CcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666667776666 777777654 45554 45677778887777664
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.76 E-value=77 Score=19.78 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=34.5
Q ss_pred Ccccc-cccccCCCCCCEEEcCCCcCcccCCCCCCCCCCCCcccEEEcCCCC
Q psy17253 121 EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171 (227)
Q Consensus 121 ~l~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~ 171 (227)
.++.+ ...|.++.+|+.+.|..+ ++.+....|.++.+ |+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~---L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTA---LEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTT---CCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCC---ccEEEEcCCC
Confidence 45555 467888899999988874 56677777877777 8888776654
Done!