RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17253
(227 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 53.7 bits (130), Expect = 4e-10
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
L L +N + + DGA G+ L LDLS N L +ISP+ F GL SL+ LD+S N L
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 45.6 bits (109), Expect = 4e-07
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L +N + + DGA G+ L LDLS N L +ISP+ F GL S+ L L N +
Sbjct: 4 SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR---SLDLSGNNL 60
Score = 44.1 bits (105), Expect = 1e-06
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L LDLS+N+L I F GL +LK+LD+S N LT++ +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL 145
+G+ N+ L L N + ++ A G+ L LDLS N L
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 49.8 bits (119), Expect = 4e-07
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 108 GVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
G + L L N+ + L + L +L LS NKL PD+ L S + L
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE---LSSCKKLVSLD 529
Query: 167 LQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
L HN++ + + + LS+LDLS N+L P + ++SL ++ISHN L
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Score = 46.4 bits (110), Expect = 6e-06
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHN 193
L LDLS N+ P L S++ + +LKL N++ + L L LDLSHN
Sbjct: 477 LENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLT 220
+L P F + L LD+S N L+
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLS 560
Score = 36.0 bits (83), Expect = 0.013
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMG--IHGLSRLDLSH 192
+ ++LS+N+L PDD S ++ L L +N N G++ I L LDLS+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSS--SLRYLNLSNN---NFTGSIPRGSIPNLETLDLSN 149
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLT 220
N L P+D SLK+LD+ N+L
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLV 177
Score = 34.1 bits (78), Expect = 0.061
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHN 193
L+ LDLS N L P+ GL S N+F+L L N +E + +L L R+ L N
Sbjct: 358 LTVLDLSTNNLTGEIPE---GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLT 220
P +F L + LDIS+N L
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQ 441
Score = 32.9 bits (75), Expect = 0.13
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Query: 111 NIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
N+F+L L N +E + +L L R+ L N P +F L V + L + +
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV---YFLDISN 437
Query: 170 NEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
N ++ ++ + L L L+ NK PD F G L+ LD+S N +
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS 488
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 41.1 bits (96), Expect = 2e-04
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
+ + + + L L N + + L+ + L+ LDL +N + I P +
Sbjct: 84 DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG---LLKS 140
Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
N+ EL L N+IE+L L + L LDLS N L + P L +L LD+S N ++
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS 199
Query: 221 TLEETSK 227
L +
Sbjct: 200 DLPPEIE 206
Score = 40.0 bits (93), Expect = 6e-04
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
N+ EL L N+IE+L L + L LDLS N L + L +++N+ L L N
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK----LLSNLSNLNNLDLSGN 196
Query: 171 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+I +L + + L LDLS+N + + L +L L++S+N L L E+
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPES 250
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 40.2 bits (94), Expect = 6e-04
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR 196
L L + LR P+D L + +I L N I N+ +L I L LDLS+N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI---NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 197 TISPDDFIGLDSLKMLDISHNLLT 220
P+ L SL++L+++ N L+
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 36.6 bits (84), Expect = 0.008
Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 53/232 (22%)
Query: 32 QVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPID 91
+ V ++D N+ L++ + L +P+ + QI L L N L+ P +
Sbjct: 167 EAVQRMRDCLKNNKTELRLKILGLTTIPACIPE----QITTLILDNNELKS-----LPEN 217
Query: 92 VCAPPSTLDNLKNQVQGV-----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 146
+ TL NQ+ + I E++L N I L L L LDL HNK+
Sbjct: 218 LQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS--ALQSLDLFHNKIS 275
Query: 147 TIS---PDDFIGLDSVTN------------IFELKLQHNEIENLDGAL-MGIH------- 183
+ P++ L N I L +Q N + L L G+
Sbjct: 276 CLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335
Query: 184 -----------GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L LD+S N++ T+ P+ ++ LD+S N LT L E
Sbjct: 336 ALTSLPASLPPELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNALTNLPE 384
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.1 bits (74), Expect = 0.016
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
L LDLS+N++ + P L +L+ LD+S N +T L S
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPLSN 43
Score = 29.8 bits (68), Expect = 0.10
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 150
TN+ L L +N+I +L L + L LDLS NK+ +SP
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.10
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 200
TN+ L L +N+I +L L + L LDLS NK+ +SP
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG 177
L LDLS+N++ + P L ++ N+ L L N+I +L
Sbjct: 3 LETLDLSNNQITDLPP-----LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 35.6 bits (82), Expect = 0.021
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 87 LRPIDVCAPPS----TLDNLKNQVQGVTNIFEL-KLQHNEIE---NLDGALMGI--HGLS 136
L P+ PS L ++ + V+ ++I L KL+H EIE NL+ GI L
Sbjct: 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE 828
Query: 137 RLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NK 194
LDLS ++LRT D TNI +L L IE + + LS LD++ N
Sbjct: 829 SLDLSGCSRLRTFP-------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881
Query: 195 LRTISPDDFIGLDSLKMLDIS 215
L+ +S + L L+ +D S
Sbjct: 882 LQRVSL-NISKLKHLETVDFS 901
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.9 bits (61), Expect = 0.80
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 135 LSRLDLSHNKLRTISPDDF 153
L LDLS+N+L ++ P F
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
Score = 26.9 bits (61), Expect = 0.80
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 185 LSRLDLSHNKLRTISPDDF 203
L LDLS+N+L ++ P F
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 26.9 bits (61), Expect = 0.80
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 135 LSRLDLSHNKLRTISPDDF 153
L LDLS+N+L ++ P F
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
Score = 26.9 bits (61), Expect = 0.80
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 185 LSRLDLSHNKLRTISPDDF 203
L LDLS+N+L ++ P F
Sbjct: 4 LRELDLSNNQLSSLPPGAF 22
>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin)
[Posttranslational modification, protein turnover,
chaperones].
Length = 103
Score = 27.2 bits (60), Expect = 3.2
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 18 SPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQ 69
+ + + +K T+F +++DA R G + SL+ +T +L ++
Sbjct: 35 TELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDME 86
>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism].
Length = 307
Score = 27.9 bits (63), Expect = 4.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
D ++ GL RL L + + P++F+
Sbjct: 160 GEYDAIILAAAGLKRLGLENRITEILDPEEFL 191
Score = 27.9 bits (63), Expect = 4.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 204
D ++ GL RL L + + P++F+
Sbjct: 160 GEYDAIILAAAGLKRLGLENRITEILDPEEFL 191
>gnl|CDD|133906 PHA00490, PHA00490, terminal protein.
Length = 266
Score = 27.6 bits (61), Expect = 5.5
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI--E 173
+LQ N I +++G+ + D KL+ I PDDF +EL L +NEI E
Sbjct: 181 QLQDNFIRSVEGSF---NSYWEADELVEKLKKIPPDDF---------YELFLIYNEISFE 228
Query: 174 NLD 176
N D
Sbjct: 229 NFD 231
>gnl|CDD|114175 pfam05435, Phi-29_GP3, Phi-29 DNA terminal protein GP3. This
family consists of DNA terminal protein GP3 sequences
from Phi-29 like bacteriophages. DNA terminal protein
GP3 is linked to the 5' ends of both strands of the
genome through a phosphodiester bond between the
beta-hydroxyl group of a serine residue and the
5'-phosphate of the terminal deoxyadenylate. This
protein is essential for DNA replication and is involved
in the priming of DNA elongation.
Length = 266
Score = 27.2 bits (60), Expect = 6.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI--E 173
+LQ N I +++G+ + D KL+ I PDDF +EL L +NEI E
Sbjct: 181 QLQDNFIRSVEGSF---NSDWEADELVEKLKKIPPDDF---------YELFLIYNEISFE 228
Query: 174 NLD 176
N D
Sbjct: 229 NFD 231
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase,
queuosine-34-forming. This tRNA-guanine
transglycosylase (tgt) catalyzes an exchange for the
guanine base at position 34 of many tRNAs; this
nucleotide is subsequently modified to queuosine. The
Archaea have a closely related enzyme that catalyzes a
base exchange for guanine at position 15 in some tRNAs,
a site that is subsequently converted to the
archaeal-specific modified base archaeosine
(7-formamidino-7-deazaguanosine), while Archaeoglobus
fulgidus has both enzymes [Protein synthesis, tRNA and
rRNA base modification].
Length = 368
Score = 27.4 bits (61), Expect = 7.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 89 PIDVCAP-PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLR 146
D C P P+ D + + E L+ ++ AL GI G + D LR
Sbjct: 139 AFDECTPYPADRDYAEKSTERTLRWAERCLEAHDRRGNKQALFGIVQGGTYED-----LR 193
Query: 147 TISPDDFIGLDS 158
+ S + I LD
Sbjct: 194 SQSAEGLIELDF 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.390
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,403,808
Number of extensions: 1080379
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 58
Length of query: 227
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 134
Effective length of database: 6,812,680
Effective search space: 912899120
Effective search space used: 912899120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)