RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17253
(227 letters)
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 98.5 bits (246), Expect = 5e-25
Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 30/221 (13%)
Query: 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
PC C + C Q + A+ S + + + ++ +P+ +F+
Sbjct: 1 PCPGACVCYNEPKVTTSCP-----QQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRAC 55
Query: 67 GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNE-IENL 125
+ L L N L + L + +L L N + ++
Sbjct: 56 R-NLTILWLHSNVLA-----------RIDAAAFTGL-------ALLEQLDLSDNAQLRSV 96
Query: 126 -DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIH 183
G+ L L L L+ + P F GL + L LQ N ++ L D +
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQALPDDTFRDLG 153
Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L+ L L N++ ++ F GL SL L + N + +
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Score = 95.4 bits (238), Expect = 6e-24
Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 53 SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
+ L + TF LG ++ L L + L+ P L +
Sbjct: 91 AQLRSVDPATFHGLG-RLHTLHLDRCGLQ-----------ELGPGLFRGL-------AAL 131
Query: 113 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
L LQ N ++ L D + L+ L L N++ ++ F GL S+ L L N
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD---RLLLHQNR 188
Query: 172 IENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ ++ A + L L L N L + + L +L+ L ++ N
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 98.3 bits (245), Expect = 4e-24
Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 28/174 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L+++P L L +NN++ T +L ++
Sbjct: 65 GLSEVPQGIPSNT----RYLNLMENNIQ-----------MIQADTFRHL-------HHLE 102
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L+L N I + GA G+ L+ L+L N L I F L + EL L++N I
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR---ELWLRNNPI 159
Query: 173 ENL-DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
E++ A + L RLDL KL IS F GL +LK L++ + +
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213
Score = 96.0 bits (239), Expect = 3e-23
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
L +PS F+ L ++ L L N + P A +L +D+ L+ +
Sbjct: 134 WLTVIPSGAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-LEYISEGA 191
Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+G+ N+ L L I+++ L + GL L++S N I P F GL S+ +L
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK---KL 247
Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ ++++ ++ A G+ L L+L+HN L ++ D F L L L + HN
Sbjct: 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 91.3 bits (227), Expect = 1e-21
Identities = 35/176 (19%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
N+ + + TF+ L + L+L +N++R + L ++
Sbjct: 86 NIQMIQADTFRHLH-HLEVLQLGRNSIR-----------QIEVGAFNGL-------ASLN 126
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH-NE 171
L+L N + + GA + L L L +N + +I F + ++ L L +
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV---PSLMRLDLGELKK 183
Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+E + +GA G+ L L+L ++ + + L L+ L++S N + S
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS 237
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 95.6 bits (238), Expect = 3e-23
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 15/173 (8%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
L +P+ F L ++ L L N + P A +LR +D+ L +
Sbjct: 123 RLTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR-LSYISEGA 180
Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+G++N+ L L + + L + L LDLS N L I P F GL + +L
Sbjct: 181 FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ---KL 236
Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ ++I+ ++ A + L ++L+HN L + D F L L+ + + HN
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 95.6 bits (238), Expect = 4e-23
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
NL ++P L L +N ++ ++ +L ++
Sbjct: 54 NLREVPDGISTNT----RLLNLHENQIQ-----------IIKVNSFKHL-------RHLE 91
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L+L N I + GA G+ L+ L+L N+L TI F+ L + EL L++N I
Sbjct: 92 ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK---ELWLRNNPI 148
Query: 173 ENL-DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
E++ A I L RLDL +L IS F GL +L+ L+++ L +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Score = 91.3 bits (227), Expect = 1e-21
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 27/176 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + +F+ L + L+L++N++R + L N+
Sbjct: 75 QIQIIKVNSFKHLR-HLEILQLSRNHIR-----------TIEIGAFNGL-------ANLN 115
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH-NE 171
L+L N + + +GA + + L L L +N + +I F + ++ L L
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI---PSLRRLDLGELKR 172
Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ + +GA G+ L L+L+ LR I + L L LD+S N L+ + S
Sbjct: 173 LSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGS 226
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 93.9 bits (234), Expect = 5e-23
Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 34/198 (17%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
L++ + + + F L Q++ ++L N L+ +K
Sbjct: 125 ELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLK---------SSGIENGAFQGMKKLS 174
Query: 104 ------NQVQGV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD 151
+ + ++ EL L N+I + +L G++ L++L LS N + +
Sbjct: 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 152 DFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------G 205
++ EL L +N++ + G L + + L +N + I +DF
Sbjct: 235 SLANT---PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 206 LDSLKMLDISHNLLTTLE 223
S + + N + E
Sbjct: 292 KASYSGVSLFSNPVQYWE 309
Score = 90.4 bits (225), Expect = 8e-22
Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 36/190 (18%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
++ + F L ++ L L+KN L+ P L+ N++
Sbjct: 87 KISKISPGAFAPLV-KLERLYLSKNQLK-----------ELPEKMPKTLQELRVHENEIT 134
Query: 108 --------GVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
G+ + ++L N +++ +GA G+ LS + ++ + TI
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--- 191
Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
++ EL L N+I + +L G++ L++L LS N + + L+ L ++
Sbjct: 192 ---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 216 HNLLTTLEET 225
+N L +
Sbjct: 249 NNKLVKVPGG 258
Score = 84.7 bits (210), Expect = 1e-19
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L LQ+N+I + DG + L L L +NK+ ISP F L + L L
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL---VKLERLYLS 108
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
N+++ L + L L + N++ + F GL+ + ++++ N L +
Sbjct: 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Score = 82.4 bits (204), Expect = 7e-19
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ + N+ L L +N+I + GA + L RL LS N+L+ + L EL
Sbjct: 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ------EL 126
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDISHNLLTTL 222
++ NEI + G++ + ++L N L++ I F G+ L + I+ +TT+
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186
Score = 70.4 bits (173), Expect = 1e-14
Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 41/166 (24%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + + + + L + L L+ N++ +L N ++
Sbjct: 203 KITKVDAASLKGLN-NLAKLGLSFNSIS-----------AVDNGSLANT-------PHLR 243
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
EL L +N++ + G L + + L +N + I +DF
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP----------------- 286
Query: 174 NLDGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDISHN 217
G S + L N ++ I P F + + + +
Sbjct: 287 ---GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 64.3 bits (157), Expect = 2e-12
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
L + S L + P D + L LQ+N+I + DG + L L L +N
Sbjct: 33 LRVVQCSDLGLEKV-PKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
K+ ISP F L L+ L +S N L L E
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPE 117
Score = 28.8 bits (65), Expect = 1.5
Identities = 4/41 (9%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 107 QGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNK 144
+ + L N ++ + ++ + + L + K
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 94.4 bits (235), Expect = 1e-22
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
++ EL+L N + + GA + L L L N+L+ I F GL +N+ +L
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL---SNLTKL 109
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ N+I L D ++ L L++ N L IS F GL+SL+ L + LT++
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169
Query: 225 TS 226
+
Sbjct: 170 EA 171
Score = 93.6 bits (233), Expect = 2e-22
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
T L L N I+ L+ L L+L+ N + + P F L ++ L L+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR---TLGLR 88
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N ++ + G G+ L++LD+S NK+ + F L +LK L++ N L +
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Score = 91.3 bits (227), Expect = 1e-21
Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 26/188 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPID------VCAPPSTLD 100
+L + + F L + L L K NL P A L + +
Sbjct: 139 DLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197
Query: 101 NLKNQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV 159
L + L++ H ++ + + L+ L ++H L + L
Sbjct: 198 RL-------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--- 247
Query: 160 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
+ L L +N I + L + L + L +L + P F GL+ L++L++S N
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 219 LTTLEETS 226
LTTLEE+
Sbjct: 308 LTTLEESV 315
Score = 90.5 bits (225), Expect = 2e-21
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCAPPSTLDNLKNQV 106
NL +P++ L ++ L+L N+ D + L+ +++ P LD +
Sbjct: 163 NLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNC 220
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
N+ L + H + + A+ + L L+LS+N + TI L + E+
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ---EI 277
Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
+L ++ ++ A G++ L L++S N+L T+ F + +L+ L + N L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 65.5 bits (160), Expect = 1e-12
Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L+I+ D + GL + +L +T NL P + +L
Sbjct: 204 VLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLT-----------AVPYLAVRHL---- 247
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ L L +N I + L + L + L +L + P F GL+ + L
Sbjct: 248 ---VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR---VL 301
Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLR 196
+ N++ L+ + L L L N L
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 92.8 bits (231), Expect = 2e-22
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 27/181 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCA------PPSTLDNLKNQ 105
L + L + ++ N L A+ +D L
Sbjct: 176 RLTHVDLSLIPSL----FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-- 229
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
LKLQHN + + L+ GL +DLS+N+L I F+ + + L
Sbjct: 230 --------ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM---QRLERL 277
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+ +N + L+ I L LDLSHN L + + D L+ L + HN + TL+ +
Sbjct: 278 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLS 336
Query: 226 S 226
+
Sbjct: 337 T 337
Score = 87.4 bits (217), Expect = 2e-20
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
P + LD+ + L L +IE +D A H + +L + N +R + P F
Sbjct: 61 PAALLDSF-------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113
Query: 154 IGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
+ +T L L+ N++ +L G L+ L +S+N L I D F SL+ L
Sbjct: 114 QNVPLLT---VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 213 DISHNLLTTLE 223
+S N LT ++
Sbjct: 171 QLSSNRLTHVD 181
Score = 85.5 bits (212), Expect = 9e-20
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 33/172 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
NL + TFQ + NL+L+ N L S + +L
Sbjct: 152 NLERIEDDTFQATT-SLQNLQLSSNRLT-----------HVDLSLIPSLF---------- 189
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+ +N + L + + LD SHN + + + L LKLQHN +
Sbjct: 190 HANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELT------ILKLQHNNLT 239
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+ L+ GL +DLS+N+L I F+ + L+ L IS+N L L
Sbjct: 240 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Score = 84.7 bits (210), Expect = 2e-19
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
N + +++ + L L + L+L+ ++ I F I +L +
Sbjct: 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTIQKLYMG 101
Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N I L + L+ L L N L ++ F L L +S+N L +E+
Sbjct: 102 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158
Score = 79.3 bits (196), Expect = 1e-17
Identities = 35/183 (19%), Positives = 57/183 (31%), Gaps = 27/183 (14%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
+ S + LP+ Q+ L L +
Sbjct: 49 IVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEE-----------IDTYAFAYA---- 92
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
I +L + N I L + L+ L L N L ++ F + L
Sbjct: 93 ---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT---PKLTTL 146
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ +N +E + D L L LS N+L + SL ++S+NLL+TL
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAI 203
Query: 225 TSK 227
Sbjct: 204 PIA 206
Score = 65.8 bits (161), Expect = 7e-13
Identities = 37/175 (21%), Positives = 55/175 (31%), Gaps = 30/175 (17%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGA-----ALRPIDVCA------PPSTLDNL 102
++N + EL LKL NNL L +D+ +
Sbjct: 216 SINVVRGPVNVEL----TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 103 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
+ L + +N + L+ I L LDLSHN L + + +
Sbjct: 272 -------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP----QFDRL 320
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L L HN I L + H L L LSHN S ++ +
Sbjct: 321 ENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDA 371
Score = 63.1 bits (154), Expect = 6e-12
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVT--NIFELKLQHNEIENL-DGALMGIHGLSRLDLS 191
+ + D + G + +T N + +++ + L L + L+L+
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 192 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ I F +++ L + N + L
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 91.8 bits (228), Expect = 1e-21
Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 10/184 (5%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV- 106
+A ++L S + + N+ L ++ G + + +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--GNGWTVDITGNFSNAISKSQAFSL 236
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIH--GLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
+I + I++ D G+ + LDLSH + +++ F L +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK--- 293
Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L +N+I + D A G+ L L+LS+N L + +F GL + +D+ N + +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 223 EETS 226
++ +
Sbjct: 354 QDQT 357
Score = 90.2 bits (224), Expect = 4e-21
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 47 SLKIAVSNLNDLPSKTFQEL--GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN 104
L ++ + + F Q +L L +++ G I +T L
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILA-HHIMGAGFGFHNIKDP-DQNTFAGLAR 265
Query: 105 QVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
+++ L L H + +L+ + L L+L++NK+ I+ + F GLD++
Sbjct: 266 -----SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ--- 317
Query: 164 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L +N + L G+ ++ +DL N + I F L+ L+ LD+ N LTT+
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 81.8 bits (202), Expect = 4e-18
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 22/191 (11%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
+ + +++ + +TF+ L ++ L L N L I + N++
Sbjct: 343 IDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTT-------IHFIPSIPDIFLSGNKLV 394
Query: 108 GVTNIF----ELKLQHNEIENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
+ I + L N +ENLD + L L L+ N+ + S D +
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--NPS 452
Query: 162 IFELKLQHNEIENLD------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
+ +L L N ++ G+ L L L+HN L ++ P F L +L+ L ++
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 216 HNLLTTLEETS 226
N LT L
Sbjct: 513 SNRLTVLSHND 523
Score = 80.6 bits (199), Expect = 1e-17
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 107 QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+ + L+L A + L LDL +K+ + PD F GL + E
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF---E 101
Query: 165 LKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLT 220
L+L + + DG + L+RLDLS N++R++ F L+SLK +D S N +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 221 TLEETS 226
+ E
Sbjct: 162 LVCEHE 167
Score = 79.1 bits (195), Expect = 3e-17
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 8/123 (6%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSVTNIFE 164
Q + L L N I + + + L L+L TI + F L N+
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL---PNLRI 77
Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTT 221
L L ++I L A G+ L L L L + F L +L LD+S N + +
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 222 LEE 224
L
Sbjct: 138 LYL 140
Score = 75.6 bits (186), Expect = 5e-16
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 70 IVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DG 127
+ + LT N + L +D+ + +L+ L L N + D
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQ----------ILILNQNRFSSCSGDQ 445
Query: 128 ALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIFELKLQHNEIENLD-GALMGIHG 184
L +L L N L+ + + ++++ L L HN + +L G +
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L L L+ N+L +S +D +L++LDIS N L
Sbjct: 506 LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV 545
Score = 75.2 bits (185), Expect = 6e-16
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 28/180 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + + +F L Q+ L+L NL N+
Sbjct: 35 YIRTVTASSFPFLE-QLQLLELGSQYTPLT----------IDKEAFRNL-------PNLR 76
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHN 170
L L ++I L A G+ L L L L + F L + L L N
Sbjct: 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL---KALTRLDLSKN 133
Query: 171 EIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLLTTLEETS 226
+I +L + ++ L +D S N++ + + L +L ++ N L +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Score = 64.1 bits (156), Expect = 4e-12
Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 49/212 (23%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--------- 104
+ L FQ L + L+L L D NLK
Sbjct: 84 KIYFLHPDAFQGLF-HLFELRLYFCGLS---------DAVLKDGYFRNLKALTRLDLSKN 133
Query: 105 ---------QVQGVTNIFELKLQHNEIENL-DGALMGIHG--LSRLDLSHNKLRTISPDD 152
+ ++ + N+I + + L + G LS L+ N L + D
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 153 FIGLDSV---TNIFELKLQHNEIENL-------------DGALMGIHGLSRLDLSHNKLR 196
+ + + L + N +L+ H + + ++
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 197 TISPDDFIGLD--SLKMLDISHNLLTTLEETS 226
+ F GL S++ LD+SH + +L
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285
Score = 53.7 bits (129), Expect = 1e-08
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 22/173 (12%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L + + + + L L +N L+ + + L
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ------LAWETELCWDVFEGL---- 479
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+++ L L HN + +L G + L L L+ N+L +S +D N+ L
Sbjct: 480 ---SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA-----NLEIL 531
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHN 217
+ N++ + LS LD++HNK FI + + I+
Sbjct: 532 DISRNQLLAPN--PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582
Score = 31.7 bits (72), Expect = 0.21
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L + L++ + L +S N + T+ +S
Sbjct: 9 AFYRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASS 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 89.3 bits (222), Expect = 2e-21
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 27/184 (14%)
Query: 57 DLPSKTFQELGLQIVNLKLTKNNLR--PDG----AALR-------PIDVCAPPSTLDNLK 103
S++ + L L+ N + L + + S +L
Sbjct: 68 GCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL- 125
Query: 104 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTN 161
N+ L + H +G G+ L L ++ N PD F L N
Sbjct: 126 ------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RN 176
Query: 162 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ L L ++E L A + L L++SHN ++ + L+SL++LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 221 TLEE 224
T ++
Sbjct: 237 TSKK 240
Score = 85.1 bits (211), Expect = 6e-20
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 31/173 (17%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L +P+ L+L N L+ P D L T +
Sbjct: 18 GLTSVPTGIPSSA----TRLELESNKLQS-----------LPHGVFDKL-------TQLT 55
Query: 114 ELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+L L N + + G L LDLS N + T+ +F+GL+ + L QH+
Sbjct: 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE---HLDFQHS 111
Query: 171 EIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
++ + + + L LD+SH R F GL SL++L ++ N
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164
Score = 82.0 bits (203), Expect = 8e-19
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 107 QGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
G++++ LK+ N EN + L+ LDLS +L +SP F L S+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ---V 203
Query: 165 LKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHN 217
L + HN +LD ++ L LD S N + T + SL L+++ N
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
Score = 75.4 bits (186), Expect = 2e-16
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD---GALMGIHGLSRLDL 190
+RL+L NKL+++ F L +T +L L N + + G L LDL
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLT---KLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
S N + T+ +F+GL+ L+ LD H+ L + E S
Sbjct: 86 SFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFS 120
Score = 60.8 bits (148), Expect = 3e-11
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 26/147 (17%)
Query: 54 NLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
+ + F L L++ LK+ N+ P L N+
Sbjct: 137 HTRVAFNGIFNGLSSLEV--LKMAGNSF------QENF----LPDIFTEL-------RNL 177
Query: 113 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
L L ++E L A + L L++SHN ++ + L ++ L N
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---NSLQVLDYSLNH 234
Query: 172 IENL-DGALMGI-HGLSRLDLSHNKLR 196
I L L+ L+L+ N
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 50.4 bits (121), Expect = 1e-07
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 22/119 (18%)
Query: 53 SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
S + F EL + L L++ L P+ ++L +++
Sbjct: 161 SFQENFLPDIFTELR-NLTFLDLSQCQLE-----------QLSPTAFNSL-------SSL 201
Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
L + HN +LD ++ L LD S N + T + +++ L L N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFLNLTQN 258
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 90.9 bits (226), Expect = 2e-21
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)
Query: 54 NLNDLPSKTFQELGL-QIVNLKLTKNNLRPDGAALR-------------PIDVCAPPSTL 99
L+ ++ +LG + +L L+ N A + S
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 100 DNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
+L + L + + + DG +G+ L+ L ++ N + + + +
Sbjct: 421 LSL-------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FAN 471
Query: 159 VTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
TN+ L L ++E + G +H L L++SHN L + + L SL LD S N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531
Query: 218 LLTTLEETS 226
+ T +
Sbjct: 532 RIETSKGIL 540
Score = 81.2 bits (201), Expect = 4e-18
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
++ + L N ++ L + L LDLS ++ TI + GL ++ L L
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL---HHLSNLILT 88
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
N I++ G+ G+ L L KL ++ L +LK L+++HN + + +
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144
Score = 78.9 bits (195), Expect = 3e-17
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 13/135 (9%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
+ N + + L L EIE ++ A G+H LS L L+ N +++ SP F
Sbjct: 48 KSYSFSNF-------SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100
Query: 154 IGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKM 211
GL S+ L ++ +L + + L +L+++HN + + P F L +L
Sbjct: 101 SGLTSLE---NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 212 LDISHNLLTTLEETS 226
+D+S+N + T+
Sbjct: 158 VDLSYNYIQTITVND 172
Score = 77.0 bits (190), Expect = 1e-16
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
+DLS N L+ + F + + L L EIE ++ A G+H LS L L+ N
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNF---SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+++ SP F GL SL+ L L +LE
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123
Score = 71.2 bits (175), Expect = 1e-14
Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 28/174 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + K + L + NL LT N ++ P + L T++
Sbjct: 67 EIETIEDKAWHGLH-HLSNLILTGNPIQ-----------SFSPGSFSGL-------TSLE 107
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L ++ +L + + L +L+++HN + + + ++TN+ + L +N I
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYI 165
Query: 173 ENL-DGALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
+ + L + LD+S N + I F G+ L L + N ++
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218
Score = 68.5 bits (168), Expect = 1e-13
Identities = 34/176 (19%), Positives = 57/176 (32%), Gaps = 29/176 (16%)
Query: 53 SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
NL + L + I +LT N D L N
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-----------IVKFHCL-------AN 286
Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+ + L I+ L+ + L + +L+ D + L L N+
Sbjct: 287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDL------PFLKSLTLTMNK 339
Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDF--IGLDSLKMLDISHNLLTTLEET 225
++ + + LS LDLS N L + +G +SL+ LD+S N +
Sbjct: 340 G-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394
Score = 67.4 bits (165), Expect = 3e-13
Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 23/175 (13%)
Query: 54 NLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
N +++ Q L GL + L L + + PS ++ L + I
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF-------EPSIMEGLCD-----VTI 263
Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
E +L + + D + +S + L+ ++ + L + +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK-----HFKWQSLSIIRCQ 318
Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++ + L L L+ NK + L SL LD+S N L+ S
Sbjct: 319 LKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCS 369
Score = 64.3 bits (157), Expect = 3e-12
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 23/154 (14%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L I+ +N F L + LK+ N+ + + + N
Sbjct: 428 YLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNT----------LSNVFANT---- 472
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
TN+ L L ++E + G +H L L++SHN L + + L S++ L
Sbjct: 473 ---TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS---TL 526
Query: 166 KLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTI 198
N IE G L L+ +L++N + I
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560
Score = 59.7 bits (145), Expect = 1e-10
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
KL + D ++ + L N ++ L + L LDLS ++
Sbjct: 16 YQCMDQKLSKVPDDIP------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEETS 226
TI + GL L L ++ N + + S
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99
Score = 59.3 bits (144), Expect = 2e-10
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 12/138 (8%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
+ L L+ Q L + N I+ + D A GI L L L N +
Sbjct: 169 TVNDLQFLRENPQ---VNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTC 224
Query: 154 I----GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSR--LDLSHNKLRTISPDDFIGL 206
+ GL I +E + + G+ ++ L++ + F L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 207 DSLKMLDISHNLLTTLEE 224
++ + ++ + LE+
Sbjct: 285 ANVSAMSLAGVSIKYLED 302
Score = 56.6 bits (137), Expect = 1e-09
Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 34/185 (18%)
Query: 54 NLNDLPSKTFQ---ELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVT 110
+ + Q E ++L ++ N + +K
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPID-----------FIQDQAFQGIKLH----- 207
Query: 111 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHN------KLRTISPDDFIGLDSVTNI 162
EL L+ N + L + GL L L P GL I
Sbjct: 208 ---ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD-VTI 263
Query: 163 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
E +L + + D + +S + L+ ++ + + L I L
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQ 321
Query: 222 LEETS 226
Sbjct: 322 FPTLD 326
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 89.5 bits (222), Expect = 3e-21
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+ L L HN + L + + L L LSHN L IS + F+ + N+ L L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV---PNLRYLDL 95
Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N + L + + L L L +N + + + F + L+ L +S N ++
Sbjct: 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
Score = 89.5 bits (222), Expect = 3e-21
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+TN+ L L HN + + A + + L LDLS N L T+ F L + L
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL---QALEVL 117
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD---SLKMLDISHNLLTT 221
L +N I + A + L +L LS N++ + + L +LD+S N L
Sbjct: 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Query: 222 LEETS 226
L T
Sbjct: 178 LPLTD 182
Score = 68.3 bits (167), Expect = 8e-14
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 43/163 (26%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+LN + S+ F + + L L+ N+L L +L +
Sbjct: 75 HLNFISSEAFVPVP-NLRYLDLSSNHLH----TL-------DEFLFSDL-------QALE 115
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L +N I + A + L +L LS N++ + + +
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK----------- 164
Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
L LDLS NKL+ + D L + +
Sbjct: 165 ------------LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 90.1 bits (224), Expect = 5e-21
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 107 QGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+ + L L ++ D +H L L+LSH+ L S F GL ++
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ---H 453
Query: 165 LKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L LQ N + +L + L L LS L +I F L + +D+SHN LT
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 221 TLEETS 226
+ +
Sbjct: 514 SSSIEA 519
Score = 86.2 bits (214), Expect = 8e-20
Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 21/175 (12%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L ++ F+E Q+ L L L+ V S NL +
Sbjct: 387 EPLSLKTEAFKEC-PQLELLDLAFTRLK----------VKDAQSPFQNL-------HLLK 428
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L H+ ++ + G+ L L+L N + L ++ + L L ++
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 173 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++D A + ++ +DLSHN+L + S + L + L+++ N ++ + +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Score = 85.1 bits (211), Expect = 2e-19
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 36/202 (17%)
Query: 47 SLKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK-- 103
+ D+ F+ L + + ++ L K+ +T
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-----------SSNTFHCFSGL 280
Query: 104 -------NQVQGVTNIF-------ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRT- 147
+ + + +L L N+ ENL + L+ L + N R
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFI 204
+ L N+ EL L H++IE D L + L L+LS+N+ ++ + F
Sbjct: 341 LGTGCLENL---ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 205 GLDSLKMLDISHNLLTTLEETS 226
L++LD++ L + S
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQS 419
Score = 82.8 bits (205), Expect = 1e-18
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L+ N + + + L+ LDL+ ++ I D F + L L
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ---HRLDTLVLT 89
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N + + + AL G L L + +I +L+ L + N +++++
Sbjct: 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148
Score = 82.0 bits (203), Expect = 2e-18
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 12/134 (8%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
+T L N+ L L +I + + H L L L+ N L ++
Sbjct: 49 QNTTFSRL-------INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101
Query: 154 IGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
G ++ L I ++ L L L L N + +I + LK+L
Sbjct: 102 SGPKALK---HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158
Query: 213 DISHNLLTTLEETS 226
D +N + L +
Sbjct: 159 DFQNNAIHYLSKED 172
Score = 82.0 bits (203), Expect = 3e-18
Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 14/179 (7%)
Query: 54 NLNDLPSKTFQEL-GLQIVNLKLTKNNLRP------DGAALRPIDVCAPPSTLDNLKNQV 106
++ L + L ++L L N++ D A + ++ + L K
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223
Query: 107 -QGVTNIFELKLQHNEIENLDGALMGIHG---LSRLDLSHNKLRTISPDDFIGLDSVTNI 162
+ +++ + + E++ A+ + ++L + IS + F + +
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF---SGL 280
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
EL L + L L+G+ L +L LS NK + SL L I N
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Score = 72.0 bits (177), Expect = 8e-15
Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 21/174 (12%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+++ + ++ L N + + +L+
Sbjct: 140 HISSIKLPKGFPTE-KLKVLDFQNNAIH-----------YLSKEDMSSLQQ-----ATNL 182
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L N+I ++ L+ + + ++ +++ + + E
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDE 241
Query: 174 NLDGALMGIHG---LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ A+ + ++L + IS + F L+ LD++ L+ L
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS 295
Score = 33.5 bits (77), Expect = 0.056
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+L+ + F L + ++ L+ N L + L +LK
Sbjct: 487 DLSSIDQHAFTSLK-MMNHVDLSHNRLT-----------SSSIEALSHLKGIY------- 527
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL 145
L L N I + L + ++L N L
Sbjct: 528 -LNLASNHISIILPSLLPILSQQRTINLRQNPL 559
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 89.7 bits (223), Expect = 7e-21
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L +F + + L L + L+ +V + PS L N+
Sbjct: 441 KYLQLTRNSFALVP-SLQRLMLRRVALK---------NVDSSPSPFQPL-------RNLT 483
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG-----LDSVTNIFELKL 167
L L +N I N++ L G+ L LDL HN L + G L ++++ L L
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543
Query: 168 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ N + + + L +DL N L T+ F SLK L++ NL+T++E+
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 88.1 bits (219), Expect = 2e-20
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 27/177 (15%)
Query: 54 NLNDLPSKTFQELGL-QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
+L L ++TF L + L LTKN + L ++
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKI-----------ESDAFSWL-------GHL 407
Query: 113 FELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
L L NEI G+ + + LS+NK ++ + F + ++ L L+
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---PSLQRLMLRRV 464
Query: 171 EIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++N+D + L+ LDLS+N + I+ D GL+ L++LD+ HN L L +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521
Score = 83.1 bits (206), Expect = 1e-18
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 25/179 (13%)
Query: 57 DLPSKTFQELGL-QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115
L K EL I NL L+ + L +T LK TN+ L
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLST-----------TSNTTFLGLKW-----TNLTML 253
Query: 116 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT------NIFELKLQ 168
L +N + + + + + L L +N ++ + GL +V + + +
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ +D + + L L++ N + I + F GL +LK L +S++ + T+
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Score = 81.6 bits (202), Expect = 4e-18
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 21/177 (11%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L+ T +L + L L+ N ++ LD N +++
Sbjct: 132 GLSSTKLGTQVQLE-NLQELLLSNNKIQ-----------ALKSEELDIFAN-----SSLK 174
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
+L+L N+I+ G I L L L++ +L + + T+I L L ++++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234
Query: 173 ENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ L+ LDLS+N L + D F L L+ + +N + L S
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Score = 80.0 bits (198), Expect = 1e-17
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TNI L L HN++ L L+ LD+ N + + P+ L + L LQ
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL---PMLKVLNLQ 81
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
HNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++ + +
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Score = 78.5 bits (194), Expect = 5e-17
Identities = 37/176 (21%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--QVQGVTN 111
NLN + + +F L Q+ L NN++ +L L N + +
Sbjct: 259 NLNVVGNDSFAWLP-QLEYFFLEYNNIQ-----------HLFSHSLHGLFNVRYLNLKRS 306
Query: 112 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+ + + +D + + L L++ N + I + F GL N+ L L ++
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL---INLKYLSLSNS 363
Query: 171 -----EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
+ N + L L+L+ NK+ I D F L L++LD+ N +
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Score = 77.3 bits (191), Expect = 1e-16
Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 54 NLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
N+ L S + L ++ +NLK + A+L I + L +
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI----DDFSFQWL-------KCL 331
Query: 113 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSVTNIFELKLQH 169
L ++ N+I + G+ L L LS++ RT++ + F+ L + + L L
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTK 390
Query: 170 NEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N+I + A + L LDL N++ + ++ ++ GL+++ + +S+N L S
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Score = 75.4 bits (186), Expect = 4e-16
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
Q + + L LQHNE+ L D L+ L L N ++ I + F+ ++ L
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI---TL 126
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF--IGLDSLKMLDISHNLLTTL 222
L HN + + G + + L L LS+NK++ + ++ SLK L++S N +
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186
Query: 223 EETS 226
Sbjct: 187 SPGC 190
Score = 62.3 bits (152), Expect = 2e-11
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
D SH KL + D TNI L L HN++ L L+ LD+ N
Sbjct: 6 HEVADCSHLKLTQVPDDLP------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ + P+ L LK+L++ HN L+ L + +
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92
Score = 46.1 bits (110), Expect = 3e-06
Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 22/164 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
N+ ++ + L ++ L L NNL P L +L N
Sbjct: 491 NIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 108 GV--------TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
+ + + L N + L L L+L N + ++ F +
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF--GPA 607
Query: 159 VTNIFELKLQHNEIENLDGALMGIHGLSR-LDLSHNKLRTISPD 201
N+ EL ++ N D I ++ +H + +S
Sbjct: 608 FRNLTELDMRFN---PFDCTCESIAWFVNWINETHTNIPELSSH 648
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 88.4 bits (219), Expect = 2e-20
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 27/181 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCA------PPSTLDNLKNQ 105
L + L + ++ N L A+ +D L
Sbjct: 182 RLTHVDLSLIPSL----FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT-- 235
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
LKLQHN + + L+ GL +DLS+N+L I F+ + + L
Sbjct: 236 --------ILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE---RL 283
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+ +N + L+ I L LDLSHN L + + D L+ L + HN + TL+ +
Sbjct: 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKLS 342
Query: 226 S 226
+
Sbjct: 343 T 343
Score = 85.4 bits (211), Expect = 2e-19
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
P + LD+ + L L +IE +D A H + +L + N +R + P F
Sbjct: 67 PAALLDSF-------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119
Query: 154 IGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
+ +T L L+ N++ +L G L+ L +S+N L I D F SL+ L
Sbjct: 120 QNVPLLT---VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 213 DISHNLLTTLE 223
+S N LT ++
Sbjct: 177 QLSSNRLTHVD 187
Score = 82.7 bits (204), Expect = 1e-18
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
N + +++ + L L + L+L+ ++ I F I +L +
Sbjct: 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA---HTIQKLYMG 107
Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N I L + L+ L L N L ++ F L L +S+N L +E+
Sbjct: 108 FNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164
Score = 81.9 bits (202), Expect = 3e-18
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 33/172 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
NL + TFQ + NL+L+ N L S + +L
Sbjct: 158 NLERIEDDTFQATT-SLQNLQLSSNRLT-----------HVDLSLIPSLF---------- 195
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+ +N + L + + LD SHN + + + L LKLQHN +
Sbjct: 196 HANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELT------ILKLQHNNLT 245
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+ L+ GL +DLS+N+L I F+ + L+ L IS+N L L
Sbjct: 246 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Score = 76.5 bits (188), Expect = 2e-16
Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 27/183 (14%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
+ S + LP+ Q+ L L + +
Sbjct: 55 IVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIE----EI-------DTYAFAYA---- 98
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
I +L + N I L + L+ L L N L ++ F + L
Sbjct: 99 ---HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT---PKLTTL 152
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ +N +E + D L L LS N+L + SL ++S+NLL+TL
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLAI 209
Query: 225 TSK 227
Sbjct: 210 PIA 212
Score = 73.4 bits (180), Expect = 3e-15
Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 32/165 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
++N + EL LKL NNL + +
Sbjct: 222 SINVVRGPVNVEL----TILKLQHNNLTDTAW--------------------LLNYPGLV 257
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
E+ L +NE+E + + + L RL +S+N+L + + + L L HN +
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI---PTLKVLDLSHNHL 313
Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+++ L L L HN + T+ +LK L +SHN
Sbjct: 314 LHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 355
Score = 71.5 bits (175), Expect = 1e-14
Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 39/207 (18%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGA-----ALRPIDVCA----- 94
L + + ++ + F I L + N +R P L + +
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 95 -PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD 152
P N + L + +N +E + D L L LS N+L +
Sbjct: 138 LPRGIFHNT-------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190
Query: 153 FIGLDSV-------------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 199
L + EL HN I + G + L+ L L HN L +
Sbjct: 191 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTA 248
Query: 200 PDDFIGLDSLKMLDISHNLLTTLEETS 226
+ L +D+S+N L +
Sbjct: 249 --WLLNYPGLVEVDLSYNELEKIMYHP 273
Score = 62.3 bits (151), Expect = 2e-11
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVT--NIFELKLQHNEIENL-DGALMGIHGLSRLDLS 191
+ + D + G + +T N + +++ + L L + L+L+
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 192 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ I F +++ L + N + L
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116
Score = 31.4 bits (71), Expect = 0.26
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
L +++ + L L HN I L + H L L LSHN S
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALF---- 366
Query: 159 VTNIFELKLQHNEI 172
N+ + +
Sbjct: 367 -RNVARPAVDDADQ 379
Score = 28.4 bits (63), Expect = 2.2
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ + + I L++ K++ ++ + L
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 86.6 bits (215), Expect = 2e-20
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 25/181 (13%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L+I + + +P F L + +++ N L + P D LK
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLR-NMNCIEMGGNPLE---------NSGFEPGAFDGLKLNY 176
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
L++ ++ + L L+ L L HNK++ I +D + + L
Sbjct: 177 --------LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY---RLG 223
Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
L HN+I + +G+L + L L L +NKL + P L L+++ + N +T +
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVN 282
Query: 226 S 226
Sbjct: 283 D 283
Score = 86.6 bits (215), Expect = 2e-20
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 37/190 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQVQ 107
++ + K F L ++ L ++KN+L PP+ +L N+++
Sbjct: 89 KISKIHEKAFSPLR-KLQKLYISKNHLV-----------EIPPNLPSSLVELRIHDNRIR 136
Query: 108 --------GVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
G+ N+ +++ N +EN GA G+ L+ L +S KL I D
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP--- 192
Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
+ EL L HN+I+ + L+ L RL L HN++R I L +L+ L +
Sbjct: 193 ---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249
Query: 216 HNLLTTLEET 225
+N L+ +
Sbjct: 250 NNKLSRVPAG 259
Score = 83.1 bits (206), Expect = 4e-19
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L LQ+N+I L G+ L L L +NK+ I F L + +L +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ---KLYIS 110
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
N + + L L L + N++R + F GL ++ +++ N L
Sbjct: 111 KNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Score = 77.4 bits (191), Expect = 5e-17
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+G+ +++ L L +N+I + + A + L +L +S N L I P+ L EL
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV------EL 128
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTTL 222
++ N I + G G+ ++ +++ N L P F GL L L IS LT +
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187
Score = 65.8 bits (161), Expect = 6e-13
Identities = 19/147 (12%), Positives = 44/147 (29%), Gaps = 25/147 (17%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + + ++ L L N +R +L L +
Sbjct: 204 KIQAIELEDLLRYS-KLYRLGLGHNQIR-----------MIENGSLSFL-------PTLR 244
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL---DSVTNIFELKLQHN 170
EL L +N++ + L + L + L N + + +DF + + L +N
Sbjct: 245 ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
Query: 171 EIENLD---GALMGIHGLSRLDLSHNK 194
+ + + + + K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 64.7 bits (158), Expect = 1e-12
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
L + S L+ + P + + L LQ+N+I L G+ L L L +N
Sbjct: 35 LRVVQCSDLGLKAV-PKEIS-----PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
K+ I F L L+ L IS N L +
Sbjct: 89 KISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 83.9 bits (208), Expect = 2e-19
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
S K + L +N+I L D + LDL N++ T++ +
Sbjct: 115 SCSRGQGKK----------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
S + L LQ+N I ++ + L LDLS NKL + +F + +
Sbjct: 165 AA--SSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWIS 220
Query: 214 ISHNLLTTLEET 225
+ +N L +E+
Sbjct: 221 LRNNKLVLIEKA 232
Score = 79.6 bits (197), Expect = 7e-18
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 30/171 (17%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
N++ + Q N+ L N + + +
Sbjct: 110 NISRVSCSRGQGK----KNIYLANNKIT-----------MLRDLDEGCR-------SRVQ 147
Query: 114 ELKLQHNEIENLDGALM--GIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
L L+ NEI+ ++ A + L L+L +N + + + L L N+
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-----AKLKTLDLSSNK 202
Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ + G++ + L +NKL I +L+ D+ N
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCG 252
Score = 79.3 bits (196), Expect = 8e-18
Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 39/196 (19%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN--- 104
K+ S+L + Q + L L+ N L + L
Sbjct: 15 EKVTDSSLKQALASLRQSAW-NVKELDLSGNPLS-----------QISAADLAPFTKLEL 62
Query: 105 ------------QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
++ ++ + L L +N ++ L + L ++N + +S
Sbjct: 63 LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR 118
Query: 153 FIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLK 210
G + L +N+I L D + LDL N++ T++ + D+L+
Sbjct: 119 GQGKK------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 211 MLDISHNLLTTLEETS 226
L++ +N + ++
Sbjct: 173 HLNLQYNFIYDVKGQV 188
Score = 57.3 bits (139), Expect = 5e-10
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 160 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
K+ + ++ + LDLS N L IS D L++L++S N+
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 219 LTTLEE 224
L +
Sbjct: 70 LYETLD 75
Score = 52.7 bits (127), Expect = 2e-08
Identities = 23/190 (12%), Positives = 55/190 (28%), Gaps = 24/190 (12%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
++ +A + + L ++ L L N + ++ ++ D L+
Sbjct: 124 NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDT-------VNFAELAASSDTLEHLN 175
Query: 104 ---NQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
N + V + L L N++ + G++ + L +NKL I
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK---- 231
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
L N+ L+ N ++ ++ ++ + +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 215 SHNLLTTLEE 224
L
Sbjct: 292 GAYCCEDLPA 301
Score = 43.1 bits (102), Expect = 3e-05
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++ + L+ ++K LD+S N L+ +
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD 53
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
L + + Q + + L++N++ ++ AL L DL N + DF
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-- 260
Query: 159 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
N + ++ L G + L P F +++ + H+
Sbjct: 261 --NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 82.5 bits (204), Expect = 5e-19
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+ + L L HN++++L + L+ LD+S N+L ++ GL + EL L
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYL 131
Query: 168 QHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ NE++ L G L L +L L++N L + GL++L L + N L T+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Score = 75.9 bits (187), Expect = 1e-16
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L N + LM L++L+L +L + D ++ + L L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG-----TLPVLGTLDLS 85
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
HN++++L + L+ LD+S N+L ++ GL L+ L + N L TL
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Score = 71.3 bits (175), Expect = 6e-15
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
T + +L L E+ L + L LDLSHN+L+++ P L + L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQSL-PLLGQTL---PALTVLD 106
Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ N + +L GAL G+ L L L N+L+T+ P L+ L +++N LT L
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Score = 68.6 bits (168), Expect = 5e-14
Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 18/173 (10%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L T ++ L L + L L+ TLD NQ+Q + +
Sbjct: 42 LLYTFSLATLMPYT-RLTQLNLDRAELT----KLQVDGTLPVLGTLDLSHNQLQSLPLLG 96
Query: 114 -------ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
L + N + +L GAL G+ L L L N+L+T+ P + +L
Sbjct: 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL---TPTPKLEKL 153
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L +N + L G L G+ L L L N L TI F G L + N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 83.6 bits (207), Expect = 8e-19
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+ + + G+ + L QH+ ++ + + + L LD+SH R F GL
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 157 DSVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
+++ LK+ N + L + L+ LDLS +L +SP F L SL++L++
Sbjct: 445 ---SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 215 SHNLLTTLEE 224
+ N L ++ +
Sbjct: 502 ASNQLKSVPD 511
Score = 81.3 bits (201), Expect = 5e-18
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L N + +L + L LDLS +++TI + L +++ L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
N I++L GA G+ L +L L ++ L +LK L+++HNL+ +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Score = 80.5 bits (199), Expect = 9e-18
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ N+ L + H +G G+ L L ++ N + D + N+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI--FTELRNLTFL 475
Query: 166 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L ++E L A + L L+++ N+L+++ F L SL+ + + N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 74.4 bits (183), Expect = 1e-15
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 193
LDLS N LR + F + L L EI+ + DGA + LS L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+++++ F GL SL+ L L +LE
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Score = 72.8 bits (179), Expect = 4e-15
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 29/180 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L L S +F ++ L L++ ++ +L +++
Sbjct: 39 PLRHLGSYSFFSF-PELQVLDLSRCEIQ-----------TIEDGAYQSL-------SHLS 79
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L N I++L GA G+ L +L L ++ L ++ EL + HN I
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLI 136
Query: 173 ENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEETS 226
++ + L LDLS NK+++I D L + + LD+S N + ++ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Score = 68.6 bits (168), Expect = 1e-13
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 19/184 (10%)
Query: 53 SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
NL + L L I +L + D + + S+ + ++ V +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI-IDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 112 IF------ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
L+L + + + + L RL + NK + L S+ L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE---FL 352
Query: 166 KLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L N + + G L LDLS N + T+ +F+GL+ L+ LD H+ L +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQM 411
Query: 223 EETS 226
E S
Sbjct: 412 SEFS 415
Score = 58.2 bits (141), Expect = 4e-10
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDD 152
+ L +++ LK+ N + L + L+ LDLS +L +SP
Sbjct: 437 FNGIFNGL-------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 153 FIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
F L +++ L + N+++++ DG + L ++ L N
Sbjct: 490 FNSL---SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 54.0 bits (130), Expect = 8e-09
Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 35/182 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
NL L + L + L + N ++ P NL TN+
Sbjct: 111 NLASLENFPIGHLK-TLKELNVAHNLIQ----------SFKLPEYFSNL-------TNLE 152
Query: 114 ELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
L L N+I+++ L +H + LDLS N + I P F + + +L L+
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLHKLTLR 208
Query: 169 HNEI--ENLDGALMGIHGLSRLDL------SHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+N + + G+ GL L + L GL +L + + L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 221 TL 222
Sbjct: 269 YY 270
Score = 45.5 bits (108), Expect = 5e-06
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
LDLS N LR + F L++LD+S + T+E+ +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 83.3 bits (206), Expect = 9e-19
Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
L ++ + + +K F + L +N G++ + DN +
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF----KDPDNFTFKGL 272
Query: 108 GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
+ + L ++I L L +L L+ N++ I + F GL + +L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL---KLN 329
Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L N + ++ + L LDLS+N +R + F+GL +LK L + N L ++ +
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Score = 79.0 bits (195), Expect = 2e-17
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 28/170 (16%)
Query: 53 SNLNDLPSKTFQELGL-QIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGV 109
+N D + TF+ L + L+K+ + S +L+
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV----------FSHFTDLE------ 302
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+L L NEI + D A G+ L +L+LS N L +I F L + L L
Sbjct: 303 ----QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL---DKLEVLDLS 355
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+N I L D + +G+ L L L N+L+++ F L SL+ + + N
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 71.3 bits (175), Expect = 1e-14
Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 13/180 (7%)
Query: 54 NLNDLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQV 106
+ + + G L+L+ L+ + C P ++ N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 107 QGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ F + +I++L + G S H + F GL++ + +
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEA-SGVKTC 280
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L ++I L L +L L+ N++ I + F GL L L++S N L +++
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Score = 70.9 bits (174), Expect = 2e-14
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 107 QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+ ++ LK++ + + G+ L L L +N+ + F GL N+
Sbjct: 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL---ANLEV 107
Query: 165 LKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLT 220
L L ++ + L L L N ++ I P F+ + +LD++ N +
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 221 TLEE 224
++ E
Sbjct: 168 SICE 171
Score = 65.5 bits (160), Expect = 1e-12
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 28/178 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
++ +L +F L + LK+ + +T L +++
Sbjct: 41 SIAELNETSFSRLQ-DLQFLKVEQQTPGLV----------IRNNTFRGL-------SSLI 82
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR--TISPDDFIGLDSVTNIFELKLQHN 170
LKL +N+ L GA G+ L L L+ L +S + F L S+ L L+ N
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE---MLVLRDN 139
Query: 171 EIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS--LKMLDISHNLLTTLEE 224
I+ + + + LDL+ NK+++I +D + +L +S L + E
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Score = 64.4 bits (157), Expect = 2e-12
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSH 192
++ +DLS N + ++ F L ++ LK++ + + G+ L L L +
Sbjct: 32 VNYVDLSLNSIAELNETSFSRL---QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLT 220
N+ + F GL +L++L ++ L
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLD 116
Score = 54.4 bits (131), Expect = 6e-09
Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 44/194 (22%)
Query: 58 LPSKTFQELGLQIVNLKLTKNNLR---PDGA-----ALRPID------VCAPPSTLDNLK 103
L F+ L + L L NN++ P +D L N +
Sbjct: 120 LSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178
Query: 104 NQVQGVTNIFELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFI 154
+ L+L +++++ G ++ LDLS N + F
Sbjct: 179 G-----KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKML 212
+ T I L L ++ H + F GL+ +K
Sbjct: 234 DAIAGTKIQSLILSNSYN-------------MGSSFGHTNFKDPDNFTFKGLEASGVKTC 280
Query: 213 DISHNLLTTLEETS 226
D+S + + L ++
Sbjct: 281 DLSKSKIFALLKSV 294
Score = 49.4 bits (118), Expect = 3e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 155 GLDSV----TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDS 208
GL V ++ + L N I L+ + + L L + I + F GL S
Sbjct: 21 GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 209 LKMLDISHNLLTTLEE 224
L +L + +N LE
Sbjct: 81 LIILKLDYNQFLQLET 96
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 79.3 bits (196), Expect = 1e-18
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
EL IE +D L + L LS N + IS L + N+ L L N I+
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-----SLSGMENLRILSLGRNLIK 83
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ L L +S+N++ ++S L +L++L +S+N +T E
Sbjct: 84 KIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGE 132
Score = 60.9 bits (148), Expect = 9e-12
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
++ + + + L L N IE + L G+ L L L N ++ I LD+
Sbjct: 37 IEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIE-----NLDA 90
Query: 159 VTN-IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISH 216
V + + EL + +N+I +L G + + L L +S+NK+ D + LD L+ L ++
Sbjct: 91 VADTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
Query: 217 NLLTT 221
N L
Sbjct: 150 NPLYN 154
Score = 49.3 bits (118), Expect = 1e-07
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+ +L N+ L L N I+ ++ L L +S+N++ ++S G+
Sbjct: 61 EKISSLSGM----ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-----GI 111
Query: 157 DSVTNIFELKLQHNEIENLDG--ALMGIHGLSRLDLSHNKL 195
+ + N+ L + +N+I N L + L L L+ N L
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 81.0 bits (200), Expect = 5e-18
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDF 153
S KN + L +N+I L D + LDL N++ T++ +
Sbjct: 115 SCSRGQGKKN----------IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
+ L LQ+N I ++ + L LDLS NKL + +F + +
Sbjct: 165 AAS--SDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWIS 220
Query: 214 ISHNLLTTLEET 225
+ +N L +E+
Sbjct: 221 LRNNKLVLIEKA 232
Score = 73.7 bits (181), Expect = 2e-15
Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 32/191 (16%)
Query: 36 ALQDRFGNDSI--SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVC 93
A+ + N + K+ S+L + Q + L L+ N L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQ----------- 48
Query: 94 APPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 153
+ L T + L L N + L + L LDL++N ++ +
Sbjct: 49 ISAADLAPF-------TKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVG-- 98
Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
+I L +N I + + G + L++NK+ + D ++ LD
Sbjct: 99 ------PSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 214 ISHNLLTTLEE 224
+ N + T+
Sbjct: 151 LKLNEIDTVNF 161
Score = 66.4 bits (162), Expect = 6e-13
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
Q N+ EL L N + + L L L+LS N L L+S++ + L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTL 85
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
L +N ++ L + L ++N + +S K + +++N +T L +
Sbjct: 86 DLNNNYVQELLVG----PSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDL 138
Query: 226 S 226
Sbjct: 139 D 139
Score = 66.0 bits (161), Expect = 6e-13
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
++ + L+ N+ EL L N + + L L L+LS N
Sbjct: 12 YKIEKVTDSSLKQALASLRQSA---WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
L L +L+ LD+++N + L
Sbjct: 69 VLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100
Score = 59.9 bits (145), Expect = 8e-11
Identities = 22/190 (11%), Positives = 54/190 (28%), Gaps = 24/190 (12%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK--- 103
++ +A + + L ++ L L N + ++ ++ D L+
Sbjct: 124 NIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDT-------VNFAELAASSDTLEHLN 175
Query: 104 ---NQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
N + V + L L N++ + G++ + L +NKL I
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALR 234
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
N+ L+ N ++ ++ ++ + +
Sbjct: 235 FS---QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 215 SHNLLTTLEE 224
L
Sbjct: 292 GAYCCEDLPA 301
Score = 51.0 bits (122), Expect = 9e-08
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 3/112 (2%)
Query: 115 LKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDS--VTNIFELKLQHNE 171
+ ++ L G + + L + L Q +E
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324
Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
E L+ +D + RT+ + + L+ L
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376
Score = 51.0 bits (122), Expect = 9e-08
Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 27/154 (17%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--- 155
L + + Q + + L++N++ ++ AL L DL N + DF
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 156 -----------------LDSVTNIFELKLQHNEIENLDGAL------MGIHGLSRLDLSH 192
+ T E+L + + L
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++ + + + +D T+ +
Sbjct: 323 SETERLECERE-NQARQREIDALKEQYRTVIDQV 355
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/190 (11%), Positives = 44/190 (23%), Gaps = 17/190 (8%)
Query: 35 DALQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCA 94
L+D F + +A + L + +E +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV-PTLGHYGAYCCED-----------L 299
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
P D L L Q +E E L+ +D + RT+ +
Sbjct: 300 PAPFADRLIAL--KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
+ L+ + ++ H L + L++L
Sbjct: 358 RKQAKI---TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414
Query: 215 SHNLLTTLEE 224
+
Sbjct: 415 IVKRYEEMYV 424
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 78.2 bits (193), Expect = 6e-18
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
EL+L +NE L G + L +++ S+NK+ I F + + + E+ L
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF---EGASGVNEILL 88
Query: 168 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N +EN+ G+ L L L N++ + D FIGL S+++L + N +TT+
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Score = 76.6 bits (189), Expect = 2e-17
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ + + ++ +N+I ++ +GA G G++ + L+ N+L + F GL ++ L
Sbjct: 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL---ESLKTL 110
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L+ N I + + + +G+ + L L N++ T++P F L SL L++ N
Sbjct: 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 77.8 bits (192), Expect = 1e-17
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL ++ L L
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---RSLNSLVLY 88
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+I L G+ L L L+ NK+ + D F L +L +L + N L T+ +
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145
Score = 74.3 bits (183), Expect = 2e-16
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ + L +N+I L A G+ L+ L L NK+ + F + + ++ L
Sbjct: 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF---EGLFSLQLL 109
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N+I L A +H L+ L L NKL+TI+ F L +++ + ++ N
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 53.9 bits (130), Expect = 3e-09
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
GL + I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL S
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 209 LKMLDISHNLLTTL 222
L L + N +T L
Sbjct: 82 LNSLVLYGNKITEL 95
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 79.7 bits (197), Expect = 2e-17
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 13/140 (9%)
Query: 90 IDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RT 147
+ + S +L N+ L + H +G G+ L L ++ N
Sbjct: 408 LKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL 206
PD F L N+ L L ++E L A + L L++SHN ++ + L
Sbjct: 461 FLPDIFTEL---RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 207 DSLKMLDISHNLLTTLEETS 226
+SL++LD S N + T ++
Sbjct: 518 NSLQVLDYSLNHIMTSKKQE 537
Score = 77.0 bits (190), Expect = 1e-16
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
S G T++ L L N + + +G+ L LD H+ L+ +S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL- 418
Query: 157 DSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDI 214
S+ N+ L + H +G G+ L L ++ N PD F L +L LD+
Sbjct: 419 -SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 215 SHNLLTTL 222
S L L
Sbjct: 478 SQCQLEQL 485
Score = 74.3 bits (183), Expect = 1e-15
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L N + +L + L LDLS +++TI + L +++ L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84
Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
N I++L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Score = 72.8 bits (179), Expect = 4e-15
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
LDLS N LR + F + L L EI+ ++ GA + LS L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+++++ F GL SL+ L L +LE
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Score = 68.5 bits (168), Expect = 1e-13
Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 29/180 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L L S +F ++ L L++ ++ +L +++
Sbjct: 39 PLRHLGSYSFFSF-PELQVLDLSRCEIQ-----------TIEDGAYQSL-------SHLS 79
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L N I++L GA G+ L +L L ++ L ++ EL + HN I
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLI 136
Query: 173 E--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEETS 226
+ L + L LDLS NK+++I D L + + LD+S N + ++ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Score = 63.5 bits (155), Expect = 6e-12
Identities = 37/176 (21%), Positives = 53/176 (30%), Gaps = 28/176 (15%)
Query: 53 SNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
NL + L L I +L + D + L TN
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD----------IIDLFNCL-------TN 283
Query: 112 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+ L IE + G L+L + K L L N+
Sbjct: 284 VSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKR------LTFTSNK 336
Query: 172 IENLDGALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSLKMLDISHNLLTTLEET 225
N + + + L LDLS N L + G SLK LD+S N + T+
Sbjct: 337 GGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Score = 56.6 bits (137), Expect = 1e-09
Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 24/173 (13%)
Query: 57 DLPSKTFQEL-GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFEL 115
++ Q L GL++ L L + + S L+ L N I E
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF-------DKSALEGLCN-----LTIEEF 262
Query: 116 KLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+L + + +++ + +S L + + + L+L + +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN-----FGWQHLELVNCKFG 317
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ L RL + NK + L SL+ LD+S N L+ S
Sbjct: 318 QFPTLKLK--SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCS 366
Score = 47.7 bits (114), Expect = 1e-06
Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 17/190 (8%)
Query: 54 NLNDLPSKTFQ---ELGLQIVNLKLTKNNLR--PDGA----ALRPIDVCAPPSTLDNLKN 104
+ + + ++ L ++L L+ N + GA L + + +L+ +K
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
Query: 105 QVQGVTNIFELKLQHNEIENLD-------GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
+QG+ + +L E N AL G+ L+ + L D +
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+TN+ L IE + G L+L + K L L
Sbjct: 280 CLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 218 LLTTLEETSK 227
+ +
Sbjct: 339 NAFSEVDLPS 348
Score = 45.0 bits (107), Expect = 1e-05
Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 35/183 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK---------N 104
+ + F L + LK+ N+ + + P L+
Sbjct: 432 HTRVAFNGIFNGLS-SLEVLKMAGNSFQENF----------LPDIFTELRNLTFLDLSQC 480
Query: 105 QVQGV--------TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG 155
Q++ + +++ L + HN +LD ++ L LD S N + T +
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 156 LDSVTNIFELKLQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
+++ L L N+ L I +L + ++ +P D G+ + L
Sbjct: 541 F--PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSL 597
Query: 213 DIS 215
+I+
Sbjct: 598 NIT 600
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 77.7 bits (192), Expect = 2e-17
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL---KNQVQ--- 107
+ + +Q L + L LT N ++ +L + + S+L L + +
Sbjct: 63 EIQTIEDGAYQSLS-HLSTLILTGNPIQ----SL-ALGAFSGLSSLQKLVAVETNLASLE 116
Query: 108 -----GVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
+ + EL + HN I++ + L LDLS NK+++I D L +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 161 NI-FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ L L N + + GA I L L L N+L+++ F L SL+ + + N
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 75.0 bits (185), Expect = 2e-16
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L N + +L + L LDLS +++TI + L +++ L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILT 84
Query: 169 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N I++L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Score = 74.2 bits (183), Expect = 4e-16
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 29/178 (16%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L L S +F ++ L L++ ++ + +L +++
Sbjct: 39 PLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TI-------EDGAYQSL-------SHLS 79
Query: 114 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L N I++L GA G+ L +L L ++ L + EL + HN I
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL---KTLKELNVAHNLI 136
Query: 173 ENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISHNLLTTLEE 224
++ + L LDLS NK+++I D L + + LD+S N + ++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 79.4 bits (196), Expect = 2e-17
Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 25/184 (13%)
Query: 53 SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPS------------TLD 100
S + +P Q L + L L++N + + A PS ++
Sbjct: 320 SKVFLVPCSFSQHLK-SLEFLDLSENLMV-EEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
+ + N+ L + N + + + L+LS +R +
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------Q 431
Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ L + +N +++ + + L L +S NKL+T+ L ++ IS N L
Sbjct: 432 TLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLK 486
Query: 221 TLEE 224
++ +
Sbjct: 487 SVPD 490
Score = 78.2 bits (193), Expect = 4e-17
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
+ LDLS NK+ I D N+ L L+ + I ++ A + L LDLS N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRAC---ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L ++S F L SLK L++ N TL TS
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Score = 74.8 bits (184), Expect = 7e-16
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L N+I + G L L L L +++ TI D F L ++ L L
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL---GSLEHLDLS 82
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISH-NLLTTLEET 225
N + +L + L L+L N +T+ F L +L+ L I + + +
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 226 S 226
Sbjct: 143 D 143
Score = 70.1 bits (172), Expect = 3e-14
Identities = 28/160 (17%), Positives = 48/160 (30%), Gaps = 38/160 (23%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 153
L N+ L L+ + I ++ A + L LDLS N L ++S F
Sbjct: 42 GHGDLRAC-------ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94
Query: 154 IGLDSVTNIFELKLQHNEIENL---------------------------DGALMGIHGLS 186
L +++ L L N + L G+ L+
Sbjct: 95 GPL---SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L++ LR + + L + + L E
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Score = 69.0 bits (169), Expect = 7e-14
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+N + F LG + +L L+ N+L S L +++
Sbjct: 61 RINTIEGDAFYSLG-SLEHLDLSDNHLS-----------SLSSSWFGPL-------SSLK 101
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQHN 170
L L N + L + L L + + I DF GL T++ EL+++
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL---TSLNELEIKAL 158
Query: 171 EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ N +L I + L L ++ + L S++ L++ L + +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP 215
Score = 69.0 bits (169), Expect = 8e-14
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 100 DNLKNQVQGVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDF 153
+ + V + + + ++ I L + + R+ + ++K+ +
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330
Query: 154 IGLDSVTNIFELKLQHNEIENL----DGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLD 207
L ++ L L N + L L LS N LR++ + + L
Sbjct: 331 QHL---KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 208 SLKMLDISHNLLTTLEET 225
+L LDIS N + ++
Sbjct: 388 NLTSLDISRNTFHPMPDS 405
Score = 66.7 bits (163), Expect = 5e-13
Identities = 25/185 (13%), Positives = 60/185 (32%), Gaps = 9/185 (4%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L++ +NL + KL + + L+ + +
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-LRYILELSEVEF 258
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
T +E + + + + + RL + L + L + +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL---EKVKRI 315
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTT 221
++++++ + + L LDLS N + + SL+ L +S N L +
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375
Query: 222 LEETS 226
+++T
Sbjct: 376 MQKTG 380
Score = 66.3 bits (162), Expect = 6e-13
Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 14/181 (7%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
L + +S L L + L+L NL P+ V S + L +
Sbjct: 177 LTLHLSESAFLLEIFADILS-SVRYLELRDTNLA--RFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 108 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
+T+ NE+ L ++ + + D + N L +P + + + + + +
Sbjct: 234 VLTD-----ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 168 QHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
+ I L + + R+ + ++K+ + L SL+ LD+S NL+
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348
Query: 222 L 222
Sbjct: 349 E 349
Score = 60.1 bits (146), Expect = 7e-11
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
D +I P + L L N+I + G L L L L +++
Sbjct: 10 CDGRSRSFTSI-PSGL-----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEE 224
TI D F L SL+ LD+S N L++L
Sbjct: 64 TIEGDAFYSLGSLEHLDLSDNHLSSLSS 91
Score = 59.7 bits (145), Expect = 1e-10
Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 24/176 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+L+ L S F L + L L N + + V + L NL+
Sbjct: 85 HLSSLSSSWFGPLS-SLKYLNLMGNPYQT-------LGVTSLFPNLTNLQ---------- 126
Query: 114 ELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
L++ + + G+ L+ L++ LR + +I L L +E
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI---RDIHHLTLHLSE 183
Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
L + + + L+L L + + + L + S
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239
Score = 51.6 bits (124), Expect = 6e-08
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ L + +N +++ + + L L +S NKL+T+ + +K+
Sbjct: 431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDASLF-----PVLLVMKISR 482
Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKL 195
N+++++ G + L ++ L N
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/189 (12%), Positives = 59/189 (31%), Gaps = 36/189 (19%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
+++ F L + L++ +LR +L ++ +I
Sbjct: 136 FSEIRRIDFAGLT-SLNELEIKALSLR-----------NYQSQSLKSI-------RDIHH 176
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L L +E L + + + L+L L + + + +L + + +
Sbjct: 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236
Query: 174 N--------LDGALMGIHGLSRLDLSHNKLRTISPDD--------FIGLDSLKMLDISHN 217
+ L ++ + + D + N L +P + + +++ L I
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296
Query: 218 LLTTLEETS 226
L T
Sbjct: 297 YLFYDLSTV 305
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 38/195 (19%)
Query: 48 LKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQ 107
L+I +L + S++ + + I +L L + D L
Sbjct: 153 LEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESA-----------FLLEIFADIL----- 195
Query: 108 GVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELK 166
+++ L+L+ + L S + + ++ + F L + L+
Sbjct: 196 --SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LE 252
Query: 167 LQHNEIENLDGALMGIHG-----------------LSRLDLSHNKLRTISPDDFIGLDSL 209
L E ++ +G + RL + L + L+ +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 210 KMLDISHNLLTTLEE 224
K + + ++ + +
Sbjct: 313 KRITVENSKVFLVPC 327
Score = 40.5 bits (95), Expect = 3e-04
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 17/108 (15%)
Query: 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPS--TLDNLKNQVQGV----TNIFELKLQHNEI 122
++ L L+ +R + C P + LD N + + EL + N++
Sbjct: 411 KMRFLNLSSTGIRV-------VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463
Query: 123 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+ L A L + +S N+L+++ F L S+ ++ L N
Sbjct: 464 KTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ---KIWLHTN 507
Score = 30.5 bits (69), Expect = 0.45
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
D +I P ++K LD+S N +T +
Sbjct: 10 CDGRSRSFTSI-PSGL--TAAMKSLDLSFNKITYIGHGD 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 75.9 bits (187), Expect = 2e-16
Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 24/174 (13%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ + + Q + L LT N + + + +L ++
Sbjct: 63 RITYISNSDLQRCV-NLQALVLTSNGIN----TI-------EEDSFSSL-------GSLE 103
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE- 171
L L +N + NL + L+ L+L N +T+ +T + L++ + +
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--FSHLTKLQILRVGNMDT 161
Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ G+ L L++ + L++ P + ++ L + L E
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Score = 75.5 bits (186), Expect = 3e-16
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSH 192
+ LDLS+N++ IS D ++ L L N I ++ + + L LDLS+
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQ---ALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
N L +S F L SL L++ N TL ETS
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Score = 75.2 bits (185), Expect = 3e-16
Identities = 33/177 (18%), Positives = 63/177 (35%), Gaps = 26/177 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+N + +F LG + +L L+ N L L S L +++
Sbjct: 87 GINTIEEDSFSSLG-SLEHLDLSYNYLS----NL-------SSSWFKPL-------SSLT 127
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHN 170
L L N + L + L L + + I DF GL + EL++ +
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE---ELEIDAS 184
Query: 171 EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++++ +L I +S L L + + S++ L++ L T +
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241
Score = 74.0 bits (182), Expect = 1e-15
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 25/169 (14%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
+ K F L + L++ ++L+ P +L ++ N+
Sbjct: 162 FTKIQRKDFAGLT-FLEELEIDASDLQ-----------SYEPKSLKSI-------QNVSH 202
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDSVTNIFELKLQ 168
L L + L + + + L+L L T +S + L +K+
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 169 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ + L I GL L+ S N+L+++ F L SL+ + + N
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 73.6 bits (181), Expect = 1e-15
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 17/186 (9%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQV----- 106
L++L S F+ L + L L N + + + + +
Sbjct: 111 YLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 107 -QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT--NI 162
G+T + EL++ +++++ +L I +S L L + + SV +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229
Query: 163 FELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
+ L L +L+ + ++ L + + L L+ S N
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQ 288
Query: 219 LTTLEE 224
L ++ +
Sbjct: 289 LKSVPD 294
Score = 72.8 bits (179), Expect = 2e-15
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L +N I + + L L L L+ N + TI D F L S+ L L
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE---HLDLS 108
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHN-LLTTLEE 224
+N + NL + L+ L+L N +T+ F L L++L + + T ++
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Score = 57.1 bits (138), Expect = 7e-10
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 139 DLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 197
S L +I + L L +N I + + L L L L+ N + T
Sbjct: 37 KGSSGSLNSIPSGLT------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90
Query: 198 ISPDDFIGLDSLKMLDISHNLLTTL 222
I D F L SL+ LD+S+N L+ L
Sbjct: 91 IEEDSFSSLGSLEHLDLSYNYLSNL 115
Score = 47.4 bits (113), Expect = 1e-06
Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 19/153 (12%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKN-Q 105
L+I S+L K+ + + + +L L +D + +
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI-----------LLLEIFVDVTSSVE 225
Query: 106 VQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
+ + +E+ + +L+ + ++ L + L+ ++ + E
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK----LLNQISGLLE 281
Query: 165 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
L+ N+++++ DG + L ++ L N
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 75.6 bits (185), Expect = 4e-16
Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 13/189 (6%)
Query: 37 LQDRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPP 96
LQ+ + L + + L +++ LQ + + +R
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK----- 428
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
L ++ L L H ++ L L + ++ LDLSHN+LR + P L
Sbjct: 429 -FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP----AL 482
Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDIS 215
++ + L+ N +EN+DG + + L L L +N+L+ + + L +L++
Sbjct: 483 AALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541
Query: 216 HNLLTTLEE 224
N L E
Sbjct: 542 GNSLCQEEG 550
Score = 45.1 bits (106), Expect = 8e-06
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIEN 174
+LQ E EN L I + LD + T+ +D + + L+ +
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432
Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
M + L L+H L + + L + LD+SHN L L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPA 481
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 75.1 bits (184), Expect = 7e-16
Identities = 33/168 (19%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK------NQV------QGVTNIFELK 116
+ + L K + + + L+++ + + Q + N+ +L
Sbjct: 22 ETIKDNLKKKS----------VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 71
Query: 117 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD 176
L N++ ++ L + L L L NK++ +S L + + L L+HN I +++
Sbjct: 72 LNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGISDIN 125
Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
G L+ + L L L +NK+ I+ L L L + N ++ +
Sbjct: 126 G-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170
Score = 47.8 bits (113), Expect = 1e-06
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 13/131 (9%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+ + L +T + L L+ N+I ++ L G+ L L LS N + + L
Sbjct: 144 TDITVLSR----LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-----L 193
Query: 157 DSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
+ N+ L+L E N + + + + L +P+ + ++
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVK 251
Query: 216 HNLLTTLEETS 226
+L E S
Sbjct: 252 WHLPEFTNEVS 262
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 73.7 bits (181), Expect = 1e-15
Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 44/239 (18%)
Query: 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
C C S V C+ V + ++I L+ ++ L + F
Sbjct: 4 HRICHC-----SNRVFLCQ-----ESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGF 53
Query: 67 GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK----------NQVQ--------G 108
G + +++++N++ L I NL N +
Sbjct: 54 G-DLEKIEISQNDV------LEVI----EADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102
Query: 109 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELK 166
+ N+ L + + I++L D + LD+ N + TI + F+GL L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF--ESVILW 160
Query: 167 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L N I+ + + A G +N L + D F G +LDIS + +L
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Score = 73.7 bits (181), Expect = 1e-15
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSVTNIFELKL 167
N EL+ ++ + GA G L ++++S N L I D F L + E+++
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL---PKLHEIRI 86
Query: 168 QH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEE 224
+ N + + A + L L +S+ ++ + I +LDI N+ + T+E
Sbjct: 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 225 TS 226
S
Sbjct: 147 NS 148
Score = 71.0 bits (174), Expect = 1e-14
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLS 191
L KLR I F G + ++++ N++ + + L + +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLE---KIEISQNDVLEVIEADVFSNLPKLHEIRIE 87
Query: 192 H-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
N L I+P+ F L +L+ L IS+ + L + K
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124
Score = 63.3 bits (154), Expect = 4e-12
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 26/168 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
NL + + FQ L + L ++ ++ P +
Sbjct: 91 NLLYINPEAFQNLP-NLQYLLISNTGIK-----------HLPDVHKIHS-------LQKV 131
Query: 114 ELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
L +Q N I + + +G+ S L L+ N ++ I F G +N
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL---SDNN 188
Query: 171 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+E L G G LD+S ++ ++ L L+ +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 74.1 bits (182), Expect = 2e-15
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ +LKL +N+IE + + + L SHNKL+ I SV + +
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK--SVYVMGSVDFS 652
Query: 169 HNEIENLDGALMGIHG------LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+N+I + + S + LS+N+++ + F + + +S+NL+T++
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712
Query: 223 EE 224
E
Sbjct: 713 PE 714
Score = 73.8 bits (181), Expect = 2e-15
Identities = 26/187 (13%), Positives = 57/187 (30%), Gaps = 38/187 (20%)
Query: 54 NLNDLPSKTFQELG----LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGV 109
+ + + + L+ N ++ P
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-----------KFPTELFATG------- 696
Query: 110 TNIFELKLQHNEIENL--------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTN 161
+ I + L +N + ++ DG + L+ +DL NKL ++S D ++
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--FRATTLPY 754
Query: 162 IFELKLQHNEIENLDGALMGIHGLSRLDLSH------NKLRTISPDDFIGLDSLKMLDIS 215
+ + + +N + + L + H N++ P SL L I
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 216 HNLLTTL 222
N + +
Sbjct: 815 SNDIRKV 821
Score = 73.8 bits (181), Expect = 2e-15
Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 40/189 (21%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
+ ++P Q+ L + N L+ P+ + ++ +
Sbjct: 606 QIEEIPEDFCAFTD-QVEGLGFSHNKLKYIPNIFNAK---------SVYVMG-------- 647
Query: 112 IFELKLQHNEIENLDGALMGIHG------LSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ +N+I + + S + LS+N+++ + F + I +
Sbjct: 648 --SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG---SPISTI 702
Query: 166 KLQHNEIENL--------DGALMGIHGLSRLDLSHNKLRTISPD-DFIGLDSLKMLDISH 216
L +N + ++ DG + L+ +DL NKL ++S D L L +D+S+
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762
Query: 217 NLLTTLEET 225
N ++
Sbjct: 763 NCFSSFPTQ 771
Score = 67.2 bits (164), Expect = 3e-13
Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 28/182 (15%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ P++ F I + L+ N + P ++L + +
Sbjct: 684 EIQKFPTELFATGS-PISTIILSNNLMT-----------SIPENSLKPKDGNYKNTYLLT 731
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+ L+ N++ +L D + LS +D+S+N + P + + + ++H
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNS---SQLKAFGIRHQR 787
Query: 172 IEN-------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ L +L + N +R + L +LDI+ N +++
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK---LTPQLYILDIADNPNISIDV 844
Query: 225 TS 226
TS
Sbjct: 845 TS 846
Score = 64.9 bits (158), Expect = 2e-12
Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 99 LDNLKNQVQGVTNIFELKLQH-NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI--- 154
+N + + ++ +++L + + L L + L L+++ N+ + +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539
Query: 155 ---GLDSVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
D+ I + +N +E +L + L LD HNK+R + F L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKL 597
Query: 210 KMLDISHNLLTTL 222
L + +N + +
Sbjct: 598 TDLKLDYNQIEEI 610
Score = 61.4 bits (149), Expect = 3e-11
Identities = 26/184 (14%), Positives = 64/184 (34%), Gaps = 17/184 (9%)
Query: 41 FGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLD 100
FG++ ++ ++ + + + L L+ +L D P +
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS--DLLQDAINRNPEMKPIKKDSRI 423
Query: 101 NLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT 160
+LK+ ++ N I + A+ + L + +++ + +V
Sbjct: 424 SLKDT--------QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-------AVD 468
Query: 161 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ EN + + + L+ ++L + T PD L L+ L+I+ N
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528
Query: 221 TLEE 224
+ +
Sbjct: 529 SAAQ 532
Score = 45.6 bits (108), Expect = 6e-06
Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 30/138 (21%)
Query: 114 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L + + A+ + L L + T+S F + ++ E + +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTIS----------------------------PDDFI 204
L L+ DL + +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ 445
Query: 205 GLDSLKMLDISHNLLTTL 222
L L+++ +++ T
Sbjct: 446 RLTKLQIIYFANSPFTYD 463
Score = 40.6 bits (95), Expect = 3e-04
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ L L+ + PD L LK+L + T
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364
Score = 34.1 bits (78), Expect = 0.036
Identities = 8/85 (9%), Positives = 17/85 (20%), Gaps = 26/85 (30%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
++ L L+ + PD L L L +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTE--------------------------LKVLSFGTHS 358
Query: 195 LRTISPDDFIGLDSLKMLDISHNLL 219
+ M + + +
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRI 383
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 71.5 bits (176), Expect = 4e-15
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ +L LQ N++ +L A + L L L+ NKL+T+ F L ++ L +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE---TLWVT 93
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+++ L G + L+ L L N+L+++ P F L L L + +N L +L +
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
Score = 68.9 bits (169), Expect = 3e-14
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L+ LPSK F L ++ L L N L+ L P L N+
Sbjct: 48 KLSSLPSKAFHRLT-KLRLLYLNDNKLQ----TL-------PAGIFKEL-------KNLE 88
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L + N+++ L G + L+ L L N+L+++ P F L T + L L +NE+
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL---TKLTYLSLGYNEL 145
Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
++L G + L L L +N+L+ + F L LK L + +N L +
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 68.5 bits (168), Expect = 4e-14
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 96 PSTLDNLK---NQVQ--------GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 143
P+ L N++ +T + L L N+++ L G + L L ++ N
Sbjct: 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 144 KLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDD 202
KL+ + F L N+ EL+L N++++L + L+ L L +N+L+++
Sbjct: 96 KLQALPIGVFDQL---VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 203 FIGLDSLKMLDISHNLLTTLEE 224
F L SLK L + +N L + E
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPE 174
Score = 51.9 bits (125), Expect = 3e-08
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 155 GLDSV-TNIF----ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
L ++ +NI +L LQ N++ +L A + L L L+ NKL+T+ F L +
Sbjct: 27 KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 209 LKMLDISHNLLTTL 222
L+ L ++ N L L
Sbjct: 87 LETLWVTDNKLQAL 100
Score = 38.4 bits (90), Expect = 8e-04
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+LDL NKL ++ F L L++L ++ N L TL
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Score = 38.0 bits (89), Expect = 0.001
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
L LP + F L ++ L L N L+ +L P D L T++ E
Sbjct: 121 LKSLPPRVFDSLT-KLTYLSLGYNELQ----SL-------PKGVFDKL-------TSLKE 161
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
L+L +N+++ + +GA + L L L +N+L+ + F L+ + + LQ N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ---LQEN 215
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 71.0 bits (175), Expect = 9e-15
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
T + LK+ +N+I +L L + L+ L++ N++ I+ + +T + L +
Sbjct: 221 TRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-----VKDLTKLKMLNVGS 274
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
N+I ++ L + L+ L L++N+L + GL +L L +S N +T + +
Sbjct: 275 NQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS 331
Score = 66.0 bits (162), Expect = 6e-13
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ + L++ N+I +++ + + L L++ N++ IS L++++ + L L +
Sbjct: 243 SQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISV-----LNNLSQLNSLFLNN 296
Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
N++ N D + G+ L+ L LS N + I P L + D ++ ++
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
Score = 63.7 bits (156), Expect = 3e-12
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 104 NQVQGVTNIFELK------LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
NQ+ ++ + L + N+I ++ AL + L L L+ + + ISP L
Sbjct: 76 NQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-----LA 129
Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
++T ++ L L N + L + GL+ L ++ +K++ ++P L L L +++N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187
Query: 218 LLTTLEE 224
+ +
Sbjct: 188 QIEDISP 194
Score = 62.6 bits (153), Expect = 8e-12
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
LQ + ++ + +++L ++ K+ +I ++ +TN+ L L
Sbjct: 22 AEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQG-----IEYLTNLEYLNLNG 75
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+I ++ L + L+ L + NK+ IS L +L+ L ++ + ++ +
Sbjct: 76 NQITDIS-PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP 127
Score = 61.4 bits (150), Expect = 2e-11
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L I + + R L + + + + +I +L + ++
Sbjct: 4 TLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT-----QEELESITKLVVAGEKVA 57
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ G + + L L+L+ N++ ISP L L L I N +T +
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 68.5 bits (168), Expect = 3e-14
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 27/174 (15%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
L L S +F L ++ ++++ L I P L L +
Sbjct: 68 LQQLESHSFYNLS-KVTHIEIRNTRN------LTYI----DPDALKEL-------PLLKF 109
Query: 115 LKLQHNEIENL--DGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSVTNIFELKLQHNE 171
L + + ++ + L+++ N + +I + F GL + T LKL +N
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET--LTLKLYNNG 167
Query: 172 IENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDS-LKMLDISHNLLTTL 222
++ A G L + L+ NK L I D F G+ S +LD+S +T L
Sbjct: 168 FTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220
Score = 68.1 bits (167), Expect = 4e-14
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENLD-GALMGIHGLSRLDLS 191
L L LRTI F L +++ + + + ++ L+ + + ++ +++
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNIS---RIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 192 HNK-LRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
+ + L I PD L LK L I + L + +K
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Score = 64.6 bits (158), Expect = 8e-13
Identities = 38/224 (16%), Positives = 85/224 (37%), Gaps = 37/224 (16%)
Query: 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
C+C V C+ + + + Q +LK+ ++L +PS F L
Sbjct: 5 SPPCEC--HQEEDFRVTCKDIQRIPSLPPSTQ--------TLKLIETHLRTIPSHAFSNL 54
Query: 67 GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHN-EIENL 125
I + ++ + L+ + + NL + + +++++ + +
Sbjct: 55 P-NISRIYVSIDV------TLQQL----ESHSFYNL-------SKVTHIEIRNTRNLTYI 96
Query: 126 D-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENL-DGALMGI 182
D AL + L L + + L+ D + S F L++ N + ++ A G+
Sbjct: 97 DPDALKELPLLKFLGIFNTGLKMFP--DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154
Query: 183 HGLSR-LDLSHNKLRTISPDDFIGLDSLKMLDISHN-LLTTLEE 224
+ L L +N ++ F G L + ++ N LT +++
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDK 197
Score = 59.2 bits (144), Expect = 5e-11
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 33/173 (19%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR--PDGAALRPIDVCAPPSTLDNLKNQVQGVTN 111
NL + +EL + L + L+ PD +
Sbjct: 92 NLTYIDPDALKELP-LLKFLGIFNTGLKMFPDLTKVY-------------------STDI 131
Query: 112 IFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
F L++ N + ++ A G+ + L L +N ++ F G T + + L
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG----TKLDAVYLN 187
Query: 169 HN-EIENLD-GALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 218
N + +D A G++ G S LD+S + + L L + + L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN-TWTL 239
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 68.1 bits (167), Expect = 2e-13
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 110 TNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L +N+I + G + L +HNKL+ I SV+ + +
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK--SVSVMSAIDFS 410
Query: 169 HNEIE--------NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+NEI LD +S ++LS+N++ + F L +++ N+LT
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470
Query: 221 TL 222
+
Sbjct: 471 EI 472
Score = 64.3 bits (157), Expect = 3e-12
Identities = 16/88 (18%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
+ + + +N L+T + + + + L+ +N++E A L+ L+L++N+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ I + + ++ L +HN L +
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYI 392
Score = 62.8 bits (153), Expect = 1e-11
Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 8/121 (6%)
Query: 110 TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKL 167
I + + +N ++ + +L + L L+ +N+L F + L L
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSE---IKLASLNL 360
Query: 168 QHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEET 225
+N+I + G + L +HNKL+ I + + +D S+N + +++
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420
Query: 226 S 226
+
Sbjct: 421 N 421
Score = 58.1 bits (141), Expect = 4e-10
Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDD 152
P ++L + + + + L+ N++ L D + L +DLS+N P
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQ 531
Query: 153 FIGLDSVTNIFELKLQHNEIE---NLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIG 205
+ + + +++ + L++L + N +R + +
Sbjct: 532 PLNS---STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV-NEKI-- 585
Query: 206 LDSLKMLDISHNLLTTLEETS 226
++ +LDI N +++ +
Sbjct: 586 TPNISVLDIKDNPNISIDLSY 606
Score = 52.0 bits (125), Expect = 4e-08
Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 21/179 (11%)
Query: 46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ 105
+S + + L K+ + P S+ LK+
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDF-SDLIKDCIN-----SDPQQKSIKKSSRITLKDT 186
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
++ N I + A+M + L + + ++ + + ++ +
Sbjct: 187 --------QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
K + + +NL L+ +++ + T P L +++++++ N + E+
Sbjct: 239 KTEDLKWDNL-------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290
Score = 41.6 bits (98), Expect = 1e-04
Identities = 7/112 (6%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175
+ NE + + + D + +++ + + + +
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDY-DPREDFSDLIKDCINSDPQQKS 174
Query: 176 DGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
I +++ N + + + L L+ + ++
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICE 225
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
P+ N ++G + Q N + L++L + N +R ++
Sbjct: 529 PTQPLNSST-LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586
Query: 155 GLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 207
NI L ++ N ++D + L ++K + I D + +
Sbjct: 587 -----PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 36.2 bits (84), Expect = 0.007
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
++ L L PD L L++L + + E
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Score = 35.8 bits (83), Expect = 0.008
Identities = 10/123 (8%), Positives = 33/123 (26%), Gaps = 9/123 (7%)
Query: 110 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+ L L+ + A+ + L L L + + + G ++ + +
Sbjct: 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK--VNERLFGPKGISANMSDEQK 138
Query: 169 HNEIENLDGALMGIHG------LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ + L + ++ + + + N +T +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 223 EET 225
+
Sbjct: 199 SKA 201
Score = 35.8 bits (83), Expect = 0.010
Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 29/129 (22%)
Query: 54 NLNDLPS-----KTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQG 108
+ + P+ T + G++ N LR P +
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIR-NQRDAQGNRT------LREW-----PEGITLC------ 565
Query: 109 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
++ +L++ N+I ++ + +S LD+ N +I L
Sbjct: 566 -PSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPY---IEAGMYMLF 619
Query: 169 HNEIENLDG 177
+++ +++ G
Sbjct: 620 YDKTQDIRG 628
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.5 bits (164), Expect = 2e-13
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 93 CAPPSTLDNLKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISP 150
C LD+L + + G N+ EL +++ +++L L G+ L L + + LR ++P
Sbjct: 15 CTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73
Query: 151 DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210
D F LSRL+LS N L ++S GL SL+
Sbjct: 74 DAFHFTPR--------------------------LSRLNLSFNALESLSWKTVQGL-SLQ 106
Query: 211 MLDISHNLLT 220
L +S N L
Sbjct: 107 ELVLSGNPLH 116
Score = 65.1 bits (158), Expect = 1e-12
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 133 HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDL 190
HG S L + + G N+ EL +++ +++L L G+ L L +
Sbjct: 8 HGSSGLRCTRDGALDS-LHHLPGA---ENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ LR ++PD F L L++S N L +L
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 66.6 bits (163), Expect = 3e-13
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+I L L +I ++ L G+ L L L N++ ISP L +TN+ L + +
Sbjct: 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGN 160
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
++ +L L + L+ L NK+ ISP L +L + + +N ++ + +
Sbjct: 161 AQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLAN 215
Score = 66.6 bits (163), Expect = 3e-13
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
VQ + N+ L+L+ N+I +L L + ++ L+LS N L+ +S + + +I L
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-----IAGLQSIKTL 112
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L +I ++ L G+ L L L N++ ISP GL +L+ L I + ++ L
Sbjct: 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167
Score = 55.1 bits (133), Expect = 3e-09
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ G+TN+ L + + ++ +L L + L+ L NK+ ISP L S+ N+ E+
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-----LASLPNLIEV 200
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
L++N+I ++ L L + L++ + L ++
Sbjct: 201 HLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259
Query: 226 S 226
S
Sbjct: 260 S 260
Score = 32.4 bits (74), Expect = 0.11
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 167 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
Q I + + ++ + + LD + L +TT+E
Sbjct: 4 TQPTAINVIFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 66.2 bits (162), Expect = 4e-13
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+Q + N+ +L L N++ ++ L + L L L NK++ +S L + + L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSL 117
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L+HN I +++G L+ + L L L +NK+ I+ L L L + N ++ +
Sbjct: 118 SLEHNGISDING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV 172
Score = 58.9 bits (143), Expect = 1e-10
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
S ++ L + + L L +N+I ++ L + L L L N++ I P L
Sbjct: 125 SDINGLVHL----PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----L 174
Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
+T + L L N I +L L G+ L L+L + + L + +
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233
Query: 217 NLLTTLEETS 226
L T E S
Sbjct: 234 GSLVTPEIIS 243
Score = 55.8 bits (135), Expect = 2e-09
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
E I+ + + +L + + + +I ++ +++I+
Sbjct: 6 ETITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDAVT-----QNELNSIDQIIANNSDIK 59
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
++ G + + +++L L+ NKL I P L +L L + N + L
Sbjct: 60 SVQG-IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLS 106
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 65.8 bits (161), Expect = 8e-13
Identities = 26/115 (22%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ L+ I+++DG + ++ L++++ S+N+L I+P L ++T + ++ + +
Sbjct: 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN 99
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+I ++ L + L+ L L +N++ I P L +L L++S N ++ +
Sbjct: 100 NQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151
Score = 65.4 bits (160), Expect = 1e-12
Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
T + L + N++ ++ L + L L ++N++ I+P L +TN+ EL L
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNG 230
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+++++ L + L+ LDL++N++ ++P GL L L + N ++ +
Sbjct: 231 NQLKDIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Score = 64.2 bits (157), Expect = 3e-12
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
T + ELKL N+I N+ L G+ L+ L+L+ N+L ISP + ++ N+ L L
Sbjct: 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYF 318
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
N I ++ + + L RL +NK+ +S L ++ L HN ++ L +
Sbjct: 319 NNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLAN 373
Score = 56.5 bits (137), Expect = 1e-09
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
TN+ L L +N+I ++D L + L+RL+LS N + IS L +T++ +L +
Sbjct: 112 TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGN 165
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ L + L RLD+S NK+ IS L +L+ L ++N ++ +
Sbjct: 166 QVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 55.7 bits (135), Expect = 2e-09
Identities = 16/111 (14%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 117 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD 176
Q I + + + L + + + L+ I+++D
Sbjct: 9 TQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSID 62
Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
G + ++ L++++ S+N+L I+P L L + +++N + + +
Sbjct: 63 G-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN 110
Score = 53.4 bits (129), Expect = 1e-08
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
N+ L L N I ++ + + L RL +NK+ +S L ++TNI L H
Sbjct: 309 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-----LANLTNINWLSAGH 362
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N+I +L L + +++L L+ + + + L
Sbjct: 363 NQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT 416
Score = 52.3 bits (126), Expect = 3e-08
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
V +T + L +N++ ++ L + ++ L HN++ ++P L ++T I +L
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP-----LANLTRITQL 380
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEE 224
L N +S + N + I S DI+ NL + E
Sbjct: 381 GLNDQAWTNAPVNYKA--NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438
Query: 225 TS 226
S
Sbjct: 439 VS 440
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 64.3 bits (157), Expect = 1e-12
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+L ++ TN+ EL L HN+I +L L + L L ++ N+L+ ++
Sbjct: 54 QSLAGMQFF----TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--- 105
Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
+ L L +NE+ + D L+ + L L + +NKL++I L L++LD+
Sbjct: 106 ---ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHG 159
Query: 217 NLLTTLEETSK 227
N +T ++
Sbjct: 160 NEITNTGGLTR 170
Score = 62.3 bits (152), Expect = 7e-12
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
N + L + +L + G+ + ++ +++++ G+ TN+ EL L H
Sbjct: 19 ANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLA-----GMQFFTNLKELHLSH 72
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
N+I +L L + L L ++ N+L+ ++ I L L + +N L +
Sbjct: 73 NQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRDTD 122
Score = 60.4 bits (147), Expect = 3e-11
Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
S L LK+ +T + EL + N ++NL+G + LSRL L +N+LR L
Sbjct: 76 SDLSPLKD----LTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTDS-----L 124
Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
+ N+ L +++N+++++ L + L LDL N++ L + +D++
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTG 181
Query: 217 NLLTTLEET 225
Sbjct: 182 QKCVNEPVK 190
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
L+ + + + L L +NE+ + D L+ + L L + +NKL++I L
Sbjct: 98 KNLNGIPS-----ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM-----L 146
Query: 157 DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
++ + L L NEI N G L + ++ +DL+ K + L + +
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG-LTRLKKVNWIDLTGQK---CVNEPVKYQPELYITNTVK 202
Query: 217 NL 218
+
Sbjct: 203 DP 204
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 64.1 bits (156), Expect = 2e-12
Identities = 38/181 (20%), Positives = 61/181 (33%), Gaps = 25/181 (13%)
Query: 47 SLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
L IA ++ + + + + L L+ N + R + P L+
Sbjct: 153 VLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGE----RGLISALCPLKFPTLQ--- 204
Query: 107 QGVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
L L++ +E G L LDLSHN LR + D + +
Sbjct: 205 -------VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQL 255
Query: 163 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L ++ + L LS LDLS+N+L L + L + N
Sbjct: 256 NSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLDS 311
Query: 223 E 223
E
Sbjct: 312 E 312
Score = 53.0 bits (127), Expect = 1e-08
Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 20/182 (10%)
Query: 58 LPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPS----TLDNLK------NQVQ 107
P + G + L L + A L + P ++ QV+
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170
Query: 108 GVTNIFELKLQHNEIENLDG-----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
+ L L N G + L L L + + T S + +
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230
Query: 163 FELKLQHNEIENLDGALMGIHG--LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L L HN + + GA L+ L+LS L+ + L +LD+S+N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLD 287
Query: 221 TL 222
Sbjct: 288 RN 289
Score = 49.1 bits (117), Expect = 3e-07
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDG---------ALMGIHGLSRLDLSHNKLRT 147
+D + Q I L L+ + ++GI GL L L + ++
Sbjct: 50 KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109
Query: 148 ISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIH-----GLSRLDLSHNKLRTISPDD 202
+P + ++ L L++ D L + GL L ++ S +
Sbjct: 110 TAPPPLLEATG-PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 203 FIGLDSLKMLDISHNLLTT 221
+L LD+S N
Sbjct: 169 VRVFPALSTLDLSDNPELG 187
Score = 48.0 bits (114), Expect = 8e-07
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 16/130 (12%)
Query: 110 TNIFELKLQHNEIENLDGALMGIH-----GLSRLDLSHNKLRTISPDDFIGLDSVTNIFE 164
++ L L++ D L + GL L ++ S + +++
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS---T 177
Query: 165 LKLQHNEIENLDG-----ALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISH 216
L L N G + L L L + + T S L+ LD+SH
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237
Query: 217 NLLTTLEETS 226
N L
Sbjct: 238 NSLRDAAGAP 247
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 64.5 bits (157), Expect = 3e-12
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKL 195
L++S N + + D + L + L + HN I+ LD L LDLSHNKL
Sbjct: 25 ILNISQNYISELWTSDILSLSKLR---ILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
IS +LK LD+S N L
Sbjct: 82 VKISCH---PTVNLKHLDLSFNAFDALPICK 109
Score = 61.8 bits (150), Expect = 2e-11
Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 22/190 (11%)
Query: 48 LKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
++ S ++ + I N ++ + +P LD N +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML----CPSKISPFLHLDFSNNLL 336
Query: 107 Q--------GVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIG 155
+T + L LQ N+++ L + L +LD+S N +
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-- 394
Query: 156 LDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
++ L + N + + L + LDL NK+++I P + L++L+ L++
Sbjct: 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNV 451
Query: 215 SHNLLTTLEE 224
+ N L ++ +
Sbjct: 452 ASNQLKSVPD 461
Score = 61.4 bits (149), Expect = 3e-11
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 24/166 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
L D + L ++ L L N L L + + ++
Sbjct: 335 LLTDTVFENCGHLT-ELETLILQMNQL----------------KELSKIAEMTTQMKSLQ 377
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
+L + N + G L L++S N L I L L N+
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHSNK 432
Query: 172 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
I+++ ++ + L L+++ N+L+++ F L SL+ + + N
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 52.9 bits (127), Expect = 2e-08
Identities = 32/121 (26%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
++ + L + HN I+ LD L LDLSHNKL IS + L L
Sbjct: 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLK------HL 95
Query: 166 KLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L N + L + L L LS L S L+ K+L + E
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155
Query: 224 E 224
+
Sbjct: 156 D 156
Score = 48.7 bits (116), Expect = 5e-07
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSVTNIF 163
++ + ++ + + I N+ L G D S L+ +S + +
Sbjct: 238 IRILQLVWHTTVWYFSISNV--KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295
Query: 164 ELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
+ I+N I LD S+N L ++ L L+ L +
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 215 SHNLLTTLEETSK 227
N L L + ++
Sbjct: 356 QMNQLKELSKIAE 368
Score = 34.5 bits (79), Expect = 0.027
Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 25/172 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIF 113
+ L F+ ++ L L+ N L NLK
Sbjct: 56 RIQYLDISVFKFNQ-ELEYLDLSHNKLVK-----------ISCHPTVNLK---------- 93
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
L L N + L + L L LS L S L+ + L + E
Sbjct: 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153
Query: 172 IENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
E+ +G L + ++ + I + +L++ +I L
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Score = 27.1 bits (60), Expect = 6.2
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+D S N L + P D +L+IS N ++ L +
Sbjct: 5 VDRSKNGLIHV-PKDL--SQKTTILNISQNYISELWTSD 40
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 61.9 bits (151), Expect = 3e-12
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
++ EL L N+ + L L+ +DLS+N++ T+S F ++T + L L +
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSF---SNMTQLLTLILSY 87
Query: 170 NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
N + + G+ L L L N + + F L +L L I N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 48.8 bits (117), Expect = 1e-07
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 155 GLDSV-----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
GL + ++ EL L N+ + L L+ +DLS+N++ T+S F + L
Sbjct: 21 GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 210 KMLDISHNLLTTL 222
L +S+N L +
Sbjct: 81 LTLILSYNRLRCI 93
Score = 33.8 bits (78), Expect = 0.024
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L L N+ T+ P + L ++D+S+N ++TL
Sbjct: 35 ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSN 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 63.4 bits (154), Expect = 7e-12
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 96 PSTLDNLK------NQVQ----GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 145
P L+ NQ+ + +++L +N + +L GL L +S N+L
Sbjct: 177 PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRL 233
Query: 146 RTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 205
++ + + EL + N + +L M GL L + N+L + P+ I
Sbjct: 234 TSLPV-------LPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLTRL-PESLIH 282
Query: 206 LDSLKMLDISHNLLTTL 222
L S +++ N L+
Sbjct: 283 LSSETTVNLEGNPLSER 299
Score = 62.6 bits (152), Expect = 1e-11
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+I L + N + +L L L++S N+L ++ P GL +
Sbjct: 61 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVLPPGL---LELSIFSNPL 113
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ L GL +L + N+L ++ L+ L +S N L +L
Sbjct: 114 THLPAL------PSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL 156
Score = 61.8 bits (150), Expect = 2e-11
Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 32/190 (16%)
Query: 39 DRFGNDSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLR--PDG-AALRPIDVCAP 95
D +L I +NL LP+ ++ L+++ N L P L + +
Sbjct: 57 DCLPAHITTLVIPDNNLTSLPA----LPP-ELRTLEVSGNQLTSLPVLPPGLLELSI--- 108
Query: 96 PSTLDNLKNQVQGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
N + + + + +L + N++ +L GL L +S N+L ++ P
Sbjct: 109 ---FSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PALPS 161
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
L L +N++ +L M GL L +S N+L ++ L L
Sbjct: 162 ELCK------LWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL----PSELYKLWA 208
Query: 215 SHNLLTTLEE 224
+N LT+L
Sbjct: 209 YNNRLTSLPA 218
Score = 54.1 bits (130), Expect = 7e-09
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 16/113 (14%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
L + + + L L ++ L + N L ++ + L++
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP-------ALPPELRTLEVSG 90
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
N++ +L G+ LS L + L L I N LT+L
Sbjct: 91 NQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSL 136
Score = 48.4 bits (115), Expect = 7e-07
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ + EL + N + +L L L +S N+L ++ + + L +
Sbjct: 221 SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLP-------MLPSGLLSLSVYR 270
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
N++ L +L+ + + ++L N L + + S
Sbjct: 271 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 60.4 bits (146), Expect = 6e-11
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
I L++ N + +L L LD N+L T+ P+ ++ L + +
Sbjct: 80 PQITVLEITQNALISLPEL---PASLEYLDACDNRLSTL-PELP------ASLKHLDVDN 129
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N++ L L ++ +N+L + SL++L + +N LT L E
Sbjct: 130 NQLTMLPEL---PALLEYINADNNQLTMLPEL----PTSLEVLSVRNNQLTFLPE 177
Score = 51.1 bits (122), Expect = 7e-08
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 197
+ +N + D F D NE +L + I+ S L L+ L +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS 73
Query: 198 ISPDDFIGLDSLKMLDISHNLLTTL 222
+ PD+ + +L+I+ N L +L
Sbjct: 74 L-PDNL--PPQITVLEITQNALISL 95
Score = 49.6 bits (118), Expect = 3e-07
Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 26/178 (14%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLR---PDGAALRPIDVC-----APPSTLDNLKNQ 105
L+ LP EL + +L + N L A L I+ P +L+
Sbjct: 111 RLSTLP-----ELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLE-- 163
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
L +++N++ L L LD+S N L ++ S
Sbjct: 164 --------VLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+ + N I ++ ++ + + L N L + + + + +
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 58.8 bits (143), Expect = 6e-11
Identities = 20/113 (17%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
++ + L + + +L G + H + L +++ +P + ++N+ L++
Sbjct: 44 NSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNYNP-----ISGLSNLERLRIMG 97
Query: 170 NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
++ + L G+ L+ LD+SH+ L + +D+S+N T
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Score = 53.4 bits (129), Expect = 4e-09
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
L + N+ A M + L+ + L++ + ++ G++ NI +L + + N
Sbjct: 28 GLLGQSSTANITEAQM--NSLTYITLANINVTDLT-----GIEYAHNIKDLTINNIHATN 80
Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ + G+ L RL + + + + GL SL +LDISH+
Sbjct: 81 YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Score = 53.0 bits (128), Expect = 6e-09
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 110 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
+N+ L++ ++ + L G+ L+ LD+SH+ L + + L
Sbjct: 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL---PKVNSIDLS 144
Query: 169 HN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+N I ++ L + L L++ + + L L + +
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 57.5 bits (140), Expect = 9e-11
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
S+L + +L + L +L+ + E+ L A+ + S+L + +
Sbjct: 6 KSKLQEIYQELTRL-KAAVGEL---PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTL 222
L + L L + LT L
Sbjct: 62 LTRL-KAAVGELPEKSKLQEIYQELTRL 88
Score = 51.3 bits (124), Expect = 2e-08
Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 28/113 (24%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+L+ + E+ L A+ + S+L + +L +
Sbjct: 73 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKA------------------- 113
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
+ L S+L + +L + L + LT L
Sbjct: 114 -AVGEL-------PEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDL 157
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 56.9 bits (138), Expect = 2e-10
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 114 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNE 171
EL L NE+ + DG + L +L+L N+L I P+ F + ++I EL+L N+
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF---EGASHIQELQLGENK 89
Query: 172 IENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
I+ + + +G+H L L+L N++ + P F L+SL L+++ N
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 52.3 bits (126), Expect = 9e-09
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
L L+ N+L IS D + ++ +L+L+ N++ + A G + L L NK+
Sbjct: 33 ELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 196 RTISPDDFIGLDSLKMLDISHNLLTT 221
+ IS F+GL LK L++ N ++
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISC 116
Score = 41.9 bits (99), Expect = 5e-05
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 207
GL + + EL L NE+ + DG + L +L+L N+L I P+ F G
Sbjct: 19 GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 208 SLKMLDISHNLLTTL 222
++ L + N + +
Sbjct: 79 HIQELQLGENKIKEI 93
Score = 33.1 bits (76), Expect = 0.036
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 187 RLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLTTLEE 224
L L+ N+L IS D F L L L++ N LT +E
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 99 LDNLKNQVQGV-TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
+N + + + L + +N++E L L L +D+ +N L+ + D
Sbjct: 119 DNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP-------D 170
Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
++ + +N++E L L + L+ + +N L+ + SL+ + +N
Sbjct: 171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNN 225
Query: 218 LLTTLEE 224
+L L E
Sbjct: 226 ILEELPE 232
Score = 53.8 bits (130), Expect = 9e-09
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 21/132 (15%)
Query: 97 STLDNLKNQVQGVTNIF----ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
L+ N + + + L + N L L L+ S N++R++
Sbjct: 260 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLC--- 313
Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
D ++ EL + +N++ L L RL S N L + +LK L
Sbjct: 314 ----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQL 362
Query: 213 DISHNLLTTLEE 224
+ +N L +
Sbjct: 363 HVEYNPLREFPD 374
Score = 52.3 bits (126), Expect = 3e-08
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 104 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
++Q + + + +N ++ L L L++ N L + + ++
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLP-------ELPQSLT 280
Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
L + N L L L+ S N++R++ SL+ L++S+N L L
Sbjct: 281 FLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP 333
Query: 224 ET 225
Sbjct: 334 AL 335
Score = 50.8 bits (122), Expect = 1e-07
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 24/140 (17%)
Query: 98 TLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
N ++ + + + + L L L+L++ L ++
Sbjct: 38 EYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--RQAHELELNNLGLSSLPE------- 88
Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP---------------DD 202
++ L N + L + L + + L + P +
Sbjct: 89 LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 148
Query: 203 FIGLDSLKMLDISHNLLTTL 222
LK++D+ +N L L
Sbjct: 149 LQNSSFLKIIDVDNNSLKKL 168
Score = 48.5 bits (116), Expect = 5e-07
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 34/146 (23%)
Query: 97 STLDNLKNQVQGVT----NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
+ LD +N G++ N++ L NEI +L L L++S+NKL +
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIELPA-- 334
Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL------ 206
+ L N + + L +L + +N LR PD +
Sbjct: 335 -----LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREF-PDIPESVEDLRMN 385
Query: 207 ----------DSLKMLDISHNLLTTL 222
+LK L + N L
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPLREF 411
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 14/119 (11%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV----------TNIF 163
E + + + + + + ++ +P +
Sbjct: 15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74
Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
EL+L + + +L L L S N L + P+ L SL + + + L+ L
Sbjct: 75 ELELNNLGLSSLPEL---PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDL 129
Score = 33.0 bits (76), Expect = 0.072
Identities = 4/61 (6%), Positives = 16/61 (26%)
Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
E + + + + + + ++ +P + + + L
Sbjct: 15 EPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74
Query: 224 E 224
E
Sbjct: 75 E 75
Score = 31.1 bits (71), Expect = 0.28
Identities = 9/89 (10%), Positives = 18/89 (20%), Gaps = 30/89 (33%)
Query: 132 IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLS 191
L +L + N LR + L ++
Sbjct: 395 PQNLKQLHVETNPLREFPD------------------------------IPESVEDLRMN 424
Query: 192 HNKLRTISPDDFIGLDSLKMLDISHNLLT 220
++ D L+ H+
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 56.2 bits (136), Expect = 3e-10
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV-TNIFELKLQHNEIE 173
+KL IE LDL K+ I L + + NEI
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIR 55
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
LDG + L L +++N++ I L L L +++N L L +
Sbjct: 56 KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105
Score = 55.0 bits (133), Expect = 8e-10
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
EL L+ +I ++ + +D S N++R + G + + L + +N I
Sbjct: 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-----GFPLLRRLKTLLVNNNRIC 77
Query: 174 NLDGALM-GIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISHNLLTTLEE 224
+ L + L+ L L++N L + D + L SL L I N +T +
Sbjct: 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 57.0 bits (138), Expect = 4e-10
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
+L LQ + L D G+ L+ L+L +N+L+T+S F L T + L L +N++
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGTLGLANNQL 95
Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+L G + L +L L N+L+++ F L LK L ++ N L ++
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148
Score = 52.0 bits (125), Expect = 2e-08
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+G+T + L L +N+++ L G + L L L++N+L ++ F D +T + +L
Sbjct: 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF---DHLTQLDKL 112
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 221
L N++++L G + L L L+ N+L++I F L +L+ L +S N L +
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 50.5 bits (121), Expect = 8e-08
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLK 103
D+ L + + L L TF+ L ++ L L N L L D+L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLT-KLTWLNLDYNQL----QTL-------SAGVFDDL- 82
Query: 104 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
T + L L +N++ +L G + L +L L N+L+++ F D +T +
Sbjct: 83 ------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF---DRLTKL 133
Query: 163 FELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
EL+L N+++++ GA + L L LS N+L+++ F L L+ + + N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 40.8 bits (96), Expect = 1e-04
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
LDSV + +L LQ + L D G+ L+ L+L +N+L+T+S F L
Sbjct: 25 SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 209 LKMLDISHNLLTTLEE 224
L L +++N L +L
Sbjct: 85 LGTLGLANNQLASLPL 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 56.0 bits (135), Expect = 2e-09
Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 18/186 (9%)
Query: 48 LKIAVSNLNDLPSKTFQELG-LQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV 106
+ + + I L ++ P + L+ +N
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF----TFLNFTQNVF 365
Query: 107 Q--------GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 158
+ + L LQ N ++N + +S L+ L +++ + +
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425
Query: 159 -VTNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
+I L L N + + + LDL +N++ +I P D L +L+ L+++
Sbjct: 426 WAESILVLNLSSNMLT--GSVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVAS 482
Query: 217 NLLTTL 222
N L ++
Sbjct: 483 NQLKSV 488
Score = 53.3 bits (128), Expect = 1e-08
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
L L N I L + + L L LSHN++R++ F ++ L +
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVS 108
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTI-SPDDFIGLDSLKMLDISHNLLTTLE 223
HN ++N+ + L LDLS N + +F L L L +S L+
Sbjct: 109 HNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162
Score = 53.0 bits (127), Expect = 2e-08
Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 99 LDNLKNQVQGVTNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRTISPDDF 153
L N N+ L+ + +L D + L+LS N L
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448
Query: 154 IGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 213
+ L L +N I ++ + + L L+++ N+L+++ F L SL+ +
Sbjct: 449 -----PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503
Query: 214 ISHN 217
+ N
Sbjct: 504 LHDN 507
Score = 50.3 bits (120), Expect = 2e-07
Identities = 19/190 (10%), Positives = 48/190 (25%), Gaps = 19/190 (10%)
Query: 53 SNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNI 112
S ++ L L + L + TL +++ + +
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269
Query: 113 FEL----KLQHNEIENL-----------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
F+ +++ I NL + + L + + +
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY---S 326
Query: 158 SVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 216
+ L ++ + + L+ + N L L+ L +
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386
Query: 217 NLLTTLEETS 226
N L + +
Sbjct: 387 NGLKNFFKVA 396
Score = 47.6 bits (113), Expect = 1e-06
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 107 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
++ + L+L HN I +LD + L LD+SHN+L+ IS ++ L
Sbjct: 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM------ASLRHL 126
Query: 166 KLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L N+ + L + L+ L LS K R + D + + L + I +L++
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180
Score = 44.1 bits (104), Expect = 2e-05
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L LS N + + D L L++L +SHN + +L+
Sbjct: 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Score = 41.0 bits (96), Expect = 2e-04
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 26/174 (14%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
+ L F + L ++ N L+ + + +L+
Sbjct: 88 IRSLDFHVFLFNQ-DLEYLDVSHNRLQ----NI-------SCCPMASLR----------H 125
Query: 115 LKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L N+ + L + L+ L LS K R + L + L L I
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH--LSCILLDLVSYHI 183
Query: 173 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ + + I + L L + S + +++L L +S+ L
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 54.3 bits (131), Expect = 7e-09
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
TN+ L N++ NLD + + L+ L+ NKL + + L
Sbjct: 85 TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQN------PLLTYLNCAR 136
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
N + +D + L+ LD NK I+ D L LD S N +T L+
Sbjct: 137 NTLTEID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD 186
Score = 52.0 bits (125), Expect = 4e-08
Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
V T + EL N+ + L+ LD S NK+ + + + L
Sbjct: 144 VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELD------VSQNKLLNRL 196
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
N I LD L L+ LD S NKL I D L L D S N LT L+ +
Sbjct: 197 NCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDVS 251
Query: 226 S 226
+
Sbjct: 252 T 252
Score = 50.8 bits (122), Expect = 9e-08
Identities = 26/138 (18%), Positives = 40/138 (28%), Gaps = 23/138 (16%)
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV------ 159
V +T + N + LD + + L+ L L I L
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286
Query: 160 ----------TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 209
T ++ L Q I LD L L L L++ +L + D L
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKL 341
Query: 210 KMLDISHNLLTTLEETSK 227
K L + + K
Sbjct: 342 KSLSCVNAHIQDFSSVGK 359
Score = 48.5 bits (116), Expect = 5e-07
Identities = 28/133 (21%), Positives = 40/133 (30%), Gaps = 29/133 (21%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ L N I LD L L+ LD S NKL I + +T +
Sbjct: 191 KLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV 242
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRTI-------------------SPDDFIGLDSLK 210
N + LD + + L+ L L I D L
Sbjct: 243 NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300
Query: 211 MLDISHNLLTTLE 223
+LD +T L+
Sbjct: 301 LLDCQAAGITELD 313
Score = 44.7 bits (106), Expect = 1e-05
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
L LD + + L + L L + E+ LD + L L +
Sbjct: 299 LYLLDCQAAGITELD------LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ S + +L + T+ +
Sbjct: 351 IQDFSS--VGKIPALNNNFEAEGQTITMPK 378
Score = 26.6 bits (59), Expect = 8.6
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 153
T + L + I++ ++ I L+ + + T+ +
Sbjct: 339 TKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETL 381
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 52.6 bits (127), Expect = 2e-08
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+++ + + + L + GL L L+ N LR + P L + EL ++
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASL---NRLRELSIRA 159
Query: 170 N--------EIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
+ + D G G+ L L L +R++ P L +LK L I ++ L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPL 218
Query: 220 TTL 222
+ L
Sbjct: 219 SAL 221
Score = 44.6 bits (106), Expect = 1e-05
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-N 193
L L L +R++ P L N+ LK++++ + L A+ + L LDL
Sbjct: 185 LQSLRLEWTGIRSL-PASIANL---QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 194 KLRTISPDDFIGLDSLKMLDISH-NLLTTL 222
LR P F G LK L + + L TL
Sbjct: 241 ALRNY-PPIFGGRAPLKRLILKDCSNLLTL 269
Score = 43.8 bits (104), Expect = 2e-05
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSVTNIFELKLQ 168
N+ LK++++ + L A+ + L LDL LR P F G + L L+
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGR---APLKRLILK 261
Query: 169 H-NEIENLDGALMGIHGLSRLDLSHN-KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ + L + + L +LDL L + P L + ++ + +L L++
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQ 318
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 52.2 bits (126), Expect = 2e-08
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 35/138 (25%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHN--------EIENLDGALMGIHGLSRLDLSHNKLR- 146
P + + + + N NL+ L+ +DLS N L
Sbjct: 166 PDSYGSFSKLFTS------MTISRNRLTGKIPPTFANLN--------LAFVDLSRNMLEG 211
Query: 147 TISPDDFIGLDSVTNIFELKLQHNEIENLDGA---LMGIHGLSRLDLSHNKLR-TISPDD 202
S S N ++ L N +L + L+ LDL +N++ T+ P
Sbjct: 212 DASVL----FGSDKNTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQG 263
Query: 203 FIGLDSLKMLDISHNLLT 220
L L L++S N L
Sbjct: 264 LTQLKFLHSLNVSFNNLC 281
Score = 45.6 bits (109), Expect = 4e-06
Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 34/138 (24%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLR-TISP 150
P L + + L +N L G ++ + L + N++ I P
Sbjct: 118 PDFLSQI-------KTLVTLDFSYN---ALSGTLPPSISSLPNLVGITFDGNRISGAI-P 166
Query: 151 DDFIGLDSVTNIFELKLQHN--------EIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202
D + + + + N NL+ L+ +DLS N L +
Sbjct: 167 DSYGSFSKLFTS--MTISRNRLTGKIPPTFANLN--------LAFVDLSRNMLEGDASVL 216
Query: 203 FIGLDSLKMLDISHNLLT 220
F + + + ++ N L
Sbjct: 217 FGSDKNTQKIHLAKNSLA 234
Score = 32.9 bits (76), Expect = 0.067
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 135 LSRLDLSHNKLR---TISPDDFIGLDSVTNIFELKLQHNEIENLDG----ALMGIHGLSR 187
++ LDLS L I + ++ + L + NL G A+ + L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSS--LA--NLPYLNFLYIGGIN--NLVGPIPPAIAKLTQLHY 105
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L ++H + PD + +L LD S+N L+
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Score = 31.7 bits (73), Expect = 0.14
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 24/106 (22%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGA---LMGIHGLSRLDLSHNKLR-TISPD 151
+ KN ++ L N +L + L+ LDL +N++ T+ P
Sbjct: 214 SVLFGSDKN-------TQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQ 262
Query: 152 DFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD---LSHNK 194
L + L + N NL G + L R D ++NK
Sbjct: 263 GLTQL---KFLHSLNVSFN---NLCGEIPQGGNLQRFDVSAYANNK 302
Score = 28.3 bits (64), Expect = 1.9
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 15/91 (16%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALM------GIHGLSRLDLS 191
D + + D V N L L NL + L+ L +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNN---LDLSGL---NLPKPYPIPSSLANLPYLNFLYIG 84
Query: 192 H-NKLR-TISPDDFIGLDSLKMLDISHNLLT 220
N L I P L L L I+H ++
Sbjct: 85 GINNLVGPI-PPAIAKLTQLHYLYITHTNVS 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 50.1 bits (120), Expect = 4e-08
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L + ++G L L L + L ++S L + + +L+L N I
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKKLELSENRIF 84
Query: 174 NLDGALMG-IHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISHNLLTTLEE 224
L + L+ L+LS NKL+ IS + + L+ LK LD+ + +T L +
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 49.0 bits (117), Expect = 1e-07
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+ +L+ + L L + K + N+ L L + +
Sbjct: 5 SSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLI 62
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
++ L + L +L+LS N++ L +L L++S N L +
Sbjct: 63 SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 50.7 bits (122), Expect = 1e-07
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHG----LSRLDLSHNKLR-TISPDDFIGLDSVTNIFE 164
+ + G + LD+S+N L I P + + +
Sbjct: 608 STRNPCNITSR---VYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-PKEIGSMPYLFI--- 660
Query: 165 LKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
L L HN ++ G + + GL+ LDLS NKL P L L +D+S+N L+
Sbjct: 661 LNLGHN---DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 50.7 bits (122), Expect = 1e-07
Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL-----MGIHGLSRLDLSHNKLR-TI 148
P TL + + L L N G L L LDLS N I
Sbjct: 335 PMDTLLKM-------RGLKVLDLSFN---EFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 149 SPDDFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGL 206
P+ + + + EL LQ+N + L L L LS N L TI P L
Sbjct: 385 LPN--LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSL 441
Query: 207 DSLKMLDISHNLLT 220
L+ L + N+L
Sbjct: 442 SKLRDLKLWLNMLE 455
Score = 46.4 bits (111), Expect = 3e-06
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 132 IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA----LMGIHGLSR 187
+ + +++ + F ++ L + +N L G + + L
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNN---GSMMFLDMSYN---MLSGYIPKEIGSMPYLFI 660
Query: 188 LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 220
L+L HN + +I PD+ L L +LD+S N L
Sbjct: 661 LNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLD 693
Score = 46.1 bits (110), Expect = 4e-06
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL--MGIHGLSRLDLSHNKLRTISPDDF 153
+ T + L + N G + + + L L L+ NK PD
Sbjct: 240 SRAISTC-------TELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289
Query: 154 IGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKM 211
G + + L L N + L L LS N + D + + LK+
Sbjct: 290 SG--ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 212 LDISHNLLT 220
LD+S N +
Sbjct: 348 LDLSFNEFS 356
Score = 44.9 bits (107), Expect = 1e-05
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGA--LMGIHGLSRLDLSH 192
L LDLS N + + ++ D + L + N + G + L LD+S
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSS 209
Query: 193 NKLRTISPDDFIGLDSLKMLDISHNLLT 220
N T P +L+ LDIS N L+
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLS 236
Score = 44.1 bits (105), Expect = 2e-05
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 110 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSVTNIFELKL 167
+ EL LQ+N + L L L LS N L TI P L + + +LKL
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI-PSSLGSL---SKLRDLKL 449
Query: 168 QHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
N L+G LM + L L L N L P +L + +S+N LT
Sbjct: 450 WLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Score = 41.4 bits (98), Expect = 1e-04
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPD 151
P TL N + + L L N L G L + L L L N L P
Sbjct: 411 PPTLSNC-------SELVSLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 152 DFIGLDSVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSL 209
+ + + + L L N++ + L L+ + LS+N+L I P L++L
Sbjct: 461 ELMYV---KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENL 516
Query: 210 KMLDISHNLLT 220
+L +S+N +
Sbjct: 517 AILKLSNNSFS 527
Score = 41.4 bits (98), Expect = 1e-04
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 114 ELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
+ L + A L+ + GL L LS++ + ++ L L
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG----FKCSASLTSLDLSR 109
Query: 170 NEIENLDGALMGIHGLSR------LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 220
N +L G + + L L++S N L + L+SL++LD+S N ++
Sbjct: 110 N---SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Score = 39.9 bits (94), Expect = 4e-04
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 12/126 (9%)
Query: 96 PSTLDNLKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFI 154
P+ L + ++ + L L N +G + + S ++ N +
Sbjct: 531 PAELGDCRS-------LIWLDLNTN---LFNGTIPAAMFKQS-GKIAANFIAGKRYVYIK 579
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 214
L + + +++ + F S+ LD+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 215 SHNLLT 220
S+N+L+
Sbjct: 640 SYNMLS 645
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 48.1 bits (115), Expect = 1e-07
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
+ L L +++ + D + L + + ++ L ++ L +L+LS N+
Sbjct: 19 VKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNR 75
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
+ +L L++S N + L
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Score = 47.7 bits (114), Expect = 2e-07
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L + L+G L L + L +I+ L + + +L+L N +
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-----NLPKLNKLKKLELSDNRVS 77
Query: 174 NLDGALM-GIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE 224
L L+ L+LS NK++ +S + L++LK LD+ + +T L +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 48.9 bits (117), Expect = 3e-07
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 15/158 (9%)
Query: 72 NLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGV------TNIFELKLQHNEIENL 125
L K ++ + + + ++ V N+ L L N++ ++
Sbjct: 23 KANLKKKSV----TDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI 78
Query: 126 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHG 184
AL + L+ L L+ N+L+++ F L TN+ EL L N++++L DG +
Sbjct: 79 -SALKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L+ L+L+HN+L+++ F L +L LD+S+N L +L
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 47.7 bits (114), Expect = 8e-07
Identities = 21/110 (19%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+ L+ + + ++ + ++ +++ ++++ G+ + N+ L L N++
Sbjct: 23 KANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-----GIQYLPNVRYLALGGNKLH 76
Query: 174 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
++ AL + L+ L L+ N+L+++ F L +LK L + N L +L
Sbjct: 77 DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Score = 45.0 bits (107), Expect = 6e-06
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 107 QGVTNIFELKLQHNEIENLDGALMGIHGLS---RLDLSHNKLRTISPDDFIGLDSVTNIF 163
+ +I ++ +++I+ ++ GI L L L NKL IS L +TN+
Sbjct: 38 NELNSIDQIIANNSDIK----SVQGIQYLPNVRYLALGGNKLHDISA-----LKELTNLT 88
Query: 164 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L N++++L +G + L L L N+L+++ F L +L L+++HN L +L
Sbjct: 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
Query: 223 EE 224
+
Sbjct: 149 PK 150
Score = 45.0 bits (107), Expect = 6e-06
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 57 DLPSKTFQELGLQIVNLKLTKNNLRPDG-AALRPIDVCAPPSTLDNLKNQVQ--GV---- 109
+L K+ + Q + + +++ I L N++
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKEL 84
Query: 110 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
TN+ L L N++++L +G + L L L N+L+++ F D +TN+ L L
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF---DKLTNLTYLNLA 141
Query: 169 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
HN++++L G + L+ LDLS+N+L+++ F L LK L + N L
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 38.5 bits (90), Expect = 8e-04
Identities = 35/113 (30%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+TN+ EL L N++++L DG + L+ L+L+HN+L+++ F D +TN+ EL
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTEL 162
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L +N++++L +G + L L L N+L+++ F L SL+ + + N
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 30.8 bits (70), Expect = 0.28
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL---KNQVQ---- 107
L LP+ F +L + L L +N L +L P V + L L NQ+Q
Sbjct: 97 LQSLPNGVFDKLT-NLKELVLVENQL----QSL-PDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 108 GV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNI 162
GV TN+ EL L +N++++L +G + L L L N+L+++ F L S+ I
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Query: 163 F 163
+
Sbjct: 211 W 211
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 45.0 bits (107), Expect = 4e-06
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 114 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI 172
L L+ N +++L +G + L++L L NKL+++ F + +T++ L L N++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF---NKLTSLTYLNLSTNQL 88
Query: 173 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
++L +G + L L L+ N+L+++ F L LK L + N L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 41.2 bits (97), Expect = 8e-05
Identities = 32/113 (28%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+T++ +L L N++++L +G + L+ L+LS N+L+++ F D +T + EL
Sbjct: 49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF---DKLTQLKEL 105
Query: 166 KLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L N++++L DG + L L L N+L+++ F L SL+ + + N
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 41.2 bits (97), Expect = 8e-05
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
LDL N L+++ F L S+T +L L N++++L +G + L+ L+LS N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLT---QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTL 222
+++ F L LK L ++ N L +L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSL 115
Score = 37.0 bits (86), Expect = 0.002
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
G SV L L+ N +++L +G + L++L L NKL+++ F L S
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LKMLDISHNLLTTLEE 224
L L++S N L +L
Sbjct: 78 LTYLNLSTNQLQSLPN 93
Score = 34.3 bits (79), Expect = 0.019
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL- 102
+ L + ++L LP+ F EL + L L N L +L P V ++L L
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKL----QSL-PNGVFNKLTSLTYLN 82
Query: 103 --KNQVQ----GV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPD 151
NQ+Q GV T + EL L N++++L DG + L L L N+L+++
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 152 DFIGLDSVTNIF 163
F L S+ I+
Sbjct: 143 VFDRLTSLQYIW 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 43.8 bits (104), Expect = 9e-06
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
L+L+ N++++L G + L++L LS N+++++ F D +T + L L N+++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF---DKLTKLTILYLHENKLQ 89
Query: 174 NL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+L +G + L L L N+L+++ F L SL+ + + N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 41.5 bits (98), Expect = 5e-05
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
RL+L NKL+++ F D +T + +L L N+I++L DG + L+ L L NKL
Sbjct: 32 RLELESNKLQSLPHGVF---DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 196 RTISPDDFIGLDSLKMLDISHNLL 219
+++ F L LK L + N L
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQL 112
Score = 34.2 bits (79), Expect = 0.017
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 155 GLDSV-TNIF----ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
GL SV T I L+L+ N++++L G + L++L LS N+++++ F L
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 209 LKMLDISHNLLTTL 222
L +L + N L +L
Sbjct: 78 LTILYLHENKLQSL 91
Score = 33.4 bits (77), Expect = 0.025
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
RL+L NKL+++ F L L L +S N + +L +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Score = 28.4 bits (64), Expect = 1.3
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 55 LNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFE 114
L LP F +L Q+ L L++N ++ +L P D L T +
Sbjct: 40 LQSLPHGVFDKLT-QLTKLSLSQNQIQ----SL-------PDGVFDKL-------TKLTI 80
Query: 115 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
L L N++++L +G + L L L N+L+++ F L S+ I+
Sbjct: 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 40.8 bits (96), Expect = 1e-04
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
L L N++ + P F L ++ EL L N++ L G + L+ LDL N+L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLK---ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 196 RTISPDDFIGLDSLKMLDISHNLLTTL 222
+ F L LK L + N LT L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL 127
Score = 40.1 bits (94), Expect = 2e-04
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 107 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ N+ EL L N++ L G + L+ LDL N+L + F D + ++ EL
Sbjct: 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF---DRLVHLKEL 117
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ N++ L + + L+ L L N+L++I F L SL + N
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 38.9 bits (91), Expect = 6e-04
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
SV TN L L N+I L G + L L L N+L + F L
Sbjct: 30 RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 209 LKMLDISHNLLTTLEE 224
L +LD+ N LT L
Sbjct: 90 LTVLDLGTNQLTVLPS 105
Score = 31.6 bits (72), Expect = 0.14
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 44 DSISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL- 102
++ L + + + L F L L + L + P+ V + L L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLI------NLKELYLGSNQLGALPVGVFDSLTQLTVLD 94
Query: 103 --KNQVQ----GV----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 152
NQ+ V ++ EL + N++ L + + L+ L L N+L++I
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 153 FIGLDSVTNIF 163
F L S+T+ +
Sbjct: 155 FDRLSSLTHAY 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 58/311 (18%), Positives = 91/311 (29%), Gaps = 115/311 (36%)
Query: 16 PISPI------------VVECEKMTSFGQVVDALQDRF------GNDSI-SLKIAVSNLN 56
P +P +VE K+ F QV++ F GND I +L A L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHAL--AAKLLQ 110
Query: 57 DLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQV---------Q 107
+ + + +L KN + A RP D + + + Q
Sbjct: 111 ENDTT-------LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 108 GVTNIF--ELKLQHNEIENLDGALMGIHG-----LSRLDLSHNKLRT------------- 147
G T+ + EL+ + L G L+ L R L K+ T
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 148 ISPDD-----------FIGLDSVTNIF----ELKLQHNEI-ENLDGALMGIHGL------ 185
+PD IG+ + + L E+ L GA GL
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 186 -------SRLDLSHNKLRTISPDDFIGL-----------------DSLK--------MLD 213
S + + FIG+ DSL+ ML
Sbjct: 284 AETDSWESFFVSVRKAITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 214 ISHNLLTTLEE 224
IS+ +++
Sbjct: 341 ISNLTQEQVQD 351
Score = 38.5 bits (89), Expect = 0.002
Identities = 53/261 (20%), Positives = 83/261 (31%), Gaps = 93/261 (35%)
Query: 29 SFGQ-VVDAL----------QDRFGNDSISLKI---AVSNLNDLPS----------KTFQ 64
SF V A+ + + N S+ I ++ N +PS + Q
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 65 ELGLQIVNLKLTKNNLRPDGAAL----RPIDVCAPPSTLDNLKNQVQGV--------TNI 112
+ + N L + +L + + V PP +L L ++ + I
Sbjct: 351 DY-VNKTNSHLPAG--KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 113 -F-ELKLQ------------HNEIENLDGALMGIHG-LSRLDLSHNK------------- 144
F E KL+ H+ + L A I+ L + ++S N
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 145 --LRTISPDDFIGLDSVTNIFEL-----KLQHNEIEN-LD-GALMGIHGLSRLDLSHNK- 194
LR +S I V I L + + LD G G GL L NK
Sbjct: 466 SDLRVLSGS--ISERIVDCIIRLPVKWETTTQFKATHILDFGPG-GASGLGVL-THRNKD 521
Query: 195 ---LRTI-------SPDDFIG 205
+R I +PDD G
Sbjct: 522 GTGVRVIVAGTLDINPDDDYG 542
Score = 30.8 bits (69), Expect = 0.47
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 19/94 (20%)
Query: 44 DSISLKIAVSNLNDLPSKTFQELG--LQIVNLKLTKNNLRPD----GAALRPIDVCAPPS 97
++ + L + + + G ++IVN N+ LR +D +
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----NVENQQYVAAGDLRALDTVT--N 1867
Query: 98 TLDNLKNQVQGVTNIFELKLQHN-EIENLDGALM 130
L+ +K Q I ++LQ + +E ++G L
Sbjct: 1868 VLNFIKLQ-----KIDIIELQKSLSLEEVEGHLF 1896
Score = 30.4 bits (68), Expect = 0.50
Identities = 28/166 (16%), Positives = 48/166 (28%), Gaps = 71/166 (42%)
Query: 16 PIS-PIVVECEKMTSF-----GQVVDALQDRFGNDSI-----SLKIAVSNLNDLPSKTFQ 64
P++ P F D + +++ ++I V + D
Sbjct: 422 PVASP----------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD------- 464
Query: 65 ELGLQIVNLKLTKNNLRPDGAALRPIDVCAP---PSTLDNLKNQVQGVTNIFELKLQHNE 121
G +L++ ++ + + P +T T+I
Sbjct: 465 --G---SDLRVLSGSISER---IVDCIIRLPVKWETTTQF------KATHI--------- 501
Query: 122 IENLD-GALMGIHGLSRLDLSHNK----LRTI-------SPDDFIG 155
LD G G GL L NK +R I +PDD G
Sbjct: 502 ---LDFGPG-GASGLGVL-THRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 27.3 bits (60), Expect = 4.8
Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 49/153 (32%)
Query: 83 DGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDL 140
D + RP L L H +E+ L S+L
Sbjct: 2 DAYSTRP-------------------------LTLSHGSLEHVLLVPTASFFIA-SQLQE 35
Query: 141 SHNKLRTISPDDFIGLDSVTNIFELK---LQH--NEIENLD-GALMGIHGLSRLDLSHNK 194
NK+ + F D T EL L + + +E G + L+L +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-----LNLCLTE 90
Query: 195 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
+ L+ DI H L L + +
Sbjct: 91 FEN----CY-----LEGNDI-HALAAKLLQEND 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 40.3 bits (95), Expect = 3e-04
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 23/131 (17%)
Query: 110 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSV 159
+ +L+L++ + E L L L +S+N I+ L DS
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND---INEAGVRVLCQGLKDSP 198
Query: 160 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSL 209
+ LKL+ + +L G + L L L NKL + P L
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258
Query: 210 KMLDISHNLLT 220
+ L I +T
Sbjct: 259 RTLWIWECGIT 269
Score = 37.6 bits (88), Expect = 0.002
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)
Query: 110 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSV 159
I +L LQ+ + L L + L L LS N + L D
Sbjct: 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL---LGDAGLQLLCEGLLDPQ 141
Query: 160 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSL 209
+ +L+L++ + E L L L +S+N + R + L
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201
Query: 210 KMLDISHNLLT 220
+ L + +T
Sbjct: 202 EALKLESCGVT 212
Score = 33.8 bits (78), Expect = 0.034
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 43/184 (23%)
Query: 60 SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQH 119
+ ++ Q+ LKL + D +L V ++ EL L
Sbjct: 191 CQGLKDSPCQLEALKLESCGVTSDNCR--------------DLCGIVASKASLRELALGS 236
Query: 120 NEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV----TNIFELKLQH 169
N++ + G L L L + I+ L V ++ EL L
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECG---ITAKGCGDLCRVLRAKESLKELSLAG 293
Query: 170 NEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDS-------LKMLDISH 216
NE+ + L L+ L L + + S L L IS+
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCS---FTAACCSHFSSVLAQNRFLLELQISN 350
Query: 217 NLLT 220
N L
Sbjct: 351 NRLE 354
Score = 29.9 bits (68), Expect = 0.65
Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 38/173 (21%)
Query: 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI-----E 123
+ L L N L G A + P S L L + I
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLR-------------TLWIWECGITAKGCG 274
Query: 124 NLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSV-TNIFELKLQHNEI----- 172
+L L L L L+ N+L R + L + L ++
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCE----TLLEPGCQLESLWVKSCSFTAACC 330
Query: 173 ENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHNLLT 220
+ L L L +S+N+L R + L++L ++ ++
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383
Score = 28.0 bits (63), Expect = 3.2
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 135 LSRLDLSHNKLRTISPDDFIGL-DSVTNIFELKLQHNEI-----ENLDGALMGIHGLSRL 188
+ LD+ + +S + L + ++L + +++ AL L+ L
Sbjct: 5 IQSLDIQCEE---LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 189 DLSHNKL 195
+L N+L
Sbjct: 62 NLRSNEL 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 38.9 bits (91), Expect = 8e-04
Identities = 31/175 (17%), Positives = 50/175 (28%), Gaps = 39/175 (22%)
Query: 72 NLKLTKNNLRPDGA-----ALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIEN-- 124
+L L N L P AL+ + V L+ + N +EN
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR----------SIICGRNRLENGS 175
Query: 125 ---LDGALMGIHGLSRLDLSHNKLRTISPDDFI--GLDSVTNIFELKLQHNEI-----EN 174
L + + N +R + + GL + L LQ N
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 175 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL---------DSLKMLDISHNLLT 220
L AL L L L+ +S + L+ L + +N +
Sbjct: 236 LAIALKSWPNLRELGLNDCL---LSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
Score = 34.3 bits (79), Expect = 0.023
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 45/180 (25%)
Query: 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI-----E 123
++ ++L+ N P L + + T + L L +N +
Sbjct: 95 KLHTVRLSDNAFGPTAQEP--------------LIDFLSKHTPLEHLYLHNNGLGPQAGA 140
Query: 124 NLDGALMGIH---------GLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKLQHNEIE 173
+ AL + L + N+L S ++ S + +K+ N I
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200
Query: 174 N------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-------DSLKMLDISHNLLT 220
L L L LDL N T + L +L+ L ++ LL+
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDN---TFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Score = 30.1 bits (68), Expect = 0.55
Identities = 29/141 (20%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 70 IVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI-----EN 124
+ +K+ +N +RP+G L + + L LQ N
Sbjct: 189 LHTVKMVQNGIRPEGIE-------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235
Query: 125 LDGALMGIHGLSRLDLSHNKLRTISPDDF---IGLDSVTNIFELKLQHNEIENLDGALM- 180
L AL L L L+ L + L+LQ+NEIE D
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTL 294
Query: 181 ------GIHGLSRLDLSHNKL 195
+ L L+L+ N+
Sbjct: 295 KTVIDEKMPDLLFLELNGNRF 315
Score = 30.1 bits (68), Expect = 0.57
Identities = 21/166 (12%), Positives = 41/166 (24%), Gaps = 40/166 (24%)
Query: 70 IVNLKLTKNNLRPDGAA--LRPIDVCAPPSTLDNLKNQV------------QGVTNIFEL 115
I L + + + + + N + ++
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 116 KLQHNEI-----------ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIF 163
+ L AL+ L + LS N + + I L T +
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 164 ELKLQHNEI-----ENLDGALMGIH---------GLSRLDLSHNKL 195
L L +N + + AL + L + N+L
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 36.1 bits (84), Expect = 0.003
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
RL L++N++ + P F D + N+ +L N++ + G + L++LDL+ N L
Sbjct: 37 RLWLNNNQITKLEPGVF---DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 196 RTISPDDFIGLDSLKMLDISHN 217
++I F L SL + + +N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.3 bits (69), Expect = 0.29
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
RL L++N++ + P F L +L+ L + N LT +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72
Score = 29.9 bits (68), Expect = 0.43
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 155 GLDSV-----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
L SV T+ L L +N+I L G + L +L + NKL I F L
Sbjct: 23 RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 209 LKMLDISHNLL 219
L LD++ N L
Sbjct: 83 LTQLDLNDNHL 93
Score = 28.0 bits (63), Expect = 1.8
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 96 PSTLDNL---KNQVQ----GV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 143
P+ L NQ+ GV N+ +L N++ + G + L++LDL+ N
Sbjct: 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 144 KLRTISPDDFIGLDSVTNIF 163
L++I F L S+T+I+
Sbjct: 92 HLKSIPRGAFDNLKSLTHIY 111
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 36.1 bits (84), Expect = 0.003
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 195
L L N++ + P F D +T + L L +N++ L G + L++L L+ N+L
Sbjct: 34 VLYLYDNQITKLEPGVF---DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 196 RTISPDDFIGLDSLKMLDISHN 217
++I F L SL + + +N
Sbjct: 91 KSIPRGAFDNLKSLTHIWLLNN 112
Score = 30.3 bits (69), Expect = 0.29
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 155 GLDSV-----TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
L SV T L L N+I L+ G + L+RLDL +N+L + F L
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 209 LKMLDISHNLL 219
L L ++ N L
Sbjct: 80 LTQLSLNDNQL 90
Score = 30.3 bits (69), Expect = 0.32
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
L L N++ + P F L L LD+ +N LT L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Score = 28.0 bits (63), Expect = 1.8
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 96 PSTLDNL---KNQVQ----GV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHN 143
P+T L NQ+ GV T + L L +N++ L G + L++L L+ N
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 144 KLRTISPDDFIGLDSVTNIF 163
+L++I F L S+T+I+
Sbjct: 89 QLKSIPRGAFDNLKSLTHIW 108
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.4 bits (79), Expect = 0.008
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ L L+ N L + P L +L+ + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 32.1 bits (73), Expect = 0.051
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+ L L+ N L + P D++ + L N
Sbjct: 33 TTELVLTGNNLTALPPGLL---DALPALRTAHLGAN 65
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 34.9 bits (79), Expect = 0.015
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 120 NEIENLDGALMGIH--GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI----- 172
++ L L + + + + + F+ D + + + + +
Sbjct: 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296
Query: 173 ENLDGALMGIHGLSRLDLSHNKL 195
L + I L +++ +N L
Sbjct: 297 RLLLDHVDKIKHLKFINMKYNYL 319
Score = 33.4 bits (75), Expect = 0.048
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 135 LSRLDL---SHNKLRTISPDDFIGL---DSVTNIFELKLQHNEIENLDGALMG----IHG 184
L +L L + + F L D N+ L + E +N+ + +
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 185 LSRLDLSHNKLR----TISPDDFIGLDSLKMLDISHNLLT 220
L +D+S L + D + LK +++ +N L+
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 34.6 bits (80), Expect = 0.020
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 128 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGAL-MG-IHGL 185
L G+ +++ ++ + D+ G S + + DG L +G G+
Sbjct: 488 LLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDE---------DGLLWVGFHGGV 538
Query: 186 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTT 221
R++ ++IS F + L M + +++ ++T
Sbjct: 539 MRINPKDESQQSISFGSFSNNEILSMTCVKNSIWVST 575
Score = 26.9 bits (60), Expect = 6.0
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 133 HGLSRLDLSHNKLRTIS-PDDFIGLDSVTNIFELKLQHNEIENLDGALMGI-HGLSRLDL 190
+GL L KL + + + +++ +I K N+I +G +GL R
Sbjct: 121 NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK--DNQI------YVGTYNGLCRYIP 172
Query: 191 SHNKLRTISPDDFIGLDSLK----MLDISHNLL 219
S+ K I +L + D + +
Sbjct: 173 SNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCV 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 34.2 bits (78), Expect = 0.024
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 165 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSLKMLDISHNLLTTL 222
L + L I L L+LS+N+L + I +LK+L++S N L +
Sbjct: 152 LNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
Query: 223 EETSK 227
E K
Sbjct: 212 RELDK 216
Score = 32.3 bits (73), Expect = 0.087
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDG---ALMGIHGLSRLDLSHNK 194
+D+ N+ ++ I +++ + L L +N + LD + L L+LS N+
Sbjct: 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207
Query: 195 LRTISPDDFIGLDSLKMLDISH 216
L++ LD +K L +
Sbjct: 208 LKSER-----ELDKIKGLKLEE 224
Score = 30.4 bits (68), Expect = 0.39
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 111 NIFELKLQHNEIENLDG---ALMGIHGLSRLDLSHNKLRTIS 149
+ L L +N + LD + L L+LS N+L++
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 212
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 33.9 bits (78), Expect = 0.037
Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 33/171 (19%)
Query: 69 QIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEI-----E 123
+ +L L+ N L A + P+ + L L N + E
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVV-------------SLNLCLNCLHGPSLE 243
Query: 124 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSV----TNIFELKLQHNEI-----EN 174
NL + L + L ++ ++ +S + L + I + EI
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303
Query: 175 LDGALMGIHG-LSRLDLSHNKLRTIS-----PDDFIGLDSLKMLDISHNLL 219
+ + + G L + L +D D L+ + L
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 32.0 bits (73), Expect = 0.13
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 110 TNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFI-GLDSV-TN 161
N+ L L N + L L I ++ LDL N + S +F ++ +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139
Query: 162 IFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFIGL-----DSLK 210
I L L+ N++ L L I ++ L+L N L + + + S+
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199
Query: 211 MLDISHNLLT 220
LD+S NLL
Sbjct: 200 SLDLSANLLG 209
Score = 31.2 bits (71), Expect = 0.21
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 128 ALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSVTNIFELKLQHNEI-----ENLDG 177
HG++ LDLS N + + L ++ ++ L L N + + L
Sbjct: 17 FTSIPHGVTSLDLSLNN---LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 178 ALMGIH-GLSRLDLSHNKLRTISPDDFIGL-----DSLKMLDISHNLLT 220
L I ++ L+LS N L S D+ + ++ +LD+ N +
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Score = 30.1 bits (68), Expect = 0.57
Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 41/199 (20%)
Query: 60 SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNL---KNQV--QGV----- 109
+ F + +L L+ N+L + + A P+ + +L N + +
Sbjct: 43 IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102
Query: 110 ------TNIFELKLQHNEI-----ENLDGALMGIH-GLSRLDLSHNKLRTISPDDFI-GL 156
I L L N+ A + ++ L+L N L S D+ I L
Sbjct: 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162
Query: 157 DSV-TNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDFIGL--- 206
++ N+ L L+ N + + L L I ++ LDLS N + + L
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL---LGLKSYAELAYI 219
Query: 207 -----DSLKMLDISHNLLT 220
+ + L++ N L
Sbjct: 220 FSSIPNHVVSLNLCLNCLH 238
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 31.6 bits (72), Expect = 0.16
Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 38/181 (20%)
Query: 73 LKLTKNNLRPDGA-----ALRPIDVCAPPSTLDNL---KNQV---------QGVTNIFEL 115
L L + P L + LD + Q+ +L
Sbjct: 77 LNLAGVRMTPVKCTVVAAVLG-----SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 116 KLQHNEIEN-----LDGALMGIH-GLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKLQ 168
LQ N + L L+ ++ L LS+N L GL T++ L L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 169 HNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL----DSLKMLDISHNLL 219
H + + L L L L++++N + SL++L + N L
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251
Query: 220 T 220
+
Sbjct: 252 S 252
Score = 31.6 bits (72), Expect = 0.17
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 30/112 (26%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIE 173
+ H E +N + + L +L+L+ + ++P + +V L
Sbjct: 53 DHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR---MTPVKCTVVAAV-------LGSGR-- 100
Query: 174 NLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHNLLT 220
H L ++L+ +L RT+ P + L + N L
Sbjct: 101 ---------HALDEVNLASCQLDPAGLRTLLP----VFLRARKLGLQLNSLG 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 31.8 bits (72), Expect = 0.18
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 1/122 (0%)
Query: 98 TLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 157
+ +L+ + ++ +K+ EI L G L P+ ++ L
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267
Query: 158 SVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLDISH 216
+ L L + + + +LDL + L T I +L++L+ +
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Query: 217 NL 218
+
Sbjct: 328 VI 329
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 29.8 bits (66), Expect = 0.52
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI--E 173
+LQ N I++++G+ + D +L+ I PDDF +EL L+ +EI E
Sbjct: 145 QLQLNFIKSVEGSF---NSFDAADELIEELKKIPPDDF---------YELFLRISEISFE 192
Query: 174 NLD 176
D
Sbjct: 193 EFD 195
Score = 28.3 bits (62), Expect = 1.8
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 132 IHGLSRL-DLSHNKLRTISPDDFIGLDSVTNIFELK------------LQHNEIENLDGA 178
+ G++R D +K+R+ S L ++ E++ LQ N I++++G+
Sbjct: 103 VTGINRPHDFDFSKVRSYS-----RLRTLEESMEMRTDPQYYEKKMIQLQLNFIKSVEGS 157
Query: 179 LMGIHGLSRLDLSHNKLRTISPDDF 203
+ D +L+ I PDDF
Sbjct: 158 F---NSFDAADELIEELKKIPPDDF 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 30.0 bits (68), Expect = 0.73
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 18/97 (18%)
Query: 133 HGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGI--HGLSRLDL 190
GL ++ + P +G + I + I + GL ++
Sbjct: 193 DGLYTYSITQKTFEKVIP--ILGTKQIQAILQQS--PTRI------WVATEGAGLFLINP 242
Query: 191 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
+++ IS N + +L S+
Sbjct: 243 KTKEIKNYL------HSPSNPKSISSNYIRSLAMDSQ 273
Score = 29.2 bits (66), Expect = 1.4
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 117 LQHNEIENL----DGAL-MG-IHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+ ++ + G + +G GLSR D + + + V I E+
Sbjct: 85 IANDISRIVKTDSQGRVWIGTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEIS---- 140
Query: 171 EIENLDGALMGI--HGLSRLDLSHNKLRTISPDDFIG 205
L+ GL D+ +K S +
Sbjct: 141 -----PEQLLISTPEGLIMFDIKESKFIDDSFSTAMH 172
Score = 28.8 bits (65), Expect = 1.8
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 14/86 (16%)
Query: 134 GLSRLDLSHNKLRTISPDD---FIGLDSVTNIFELKLQHNEIENLDGAL-MG-IHGLSRL 188
L R + TI + + +T +F L +G GLS
Sbjct: 472 ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS---------HKRLWIGGEEGLSVF 522
Query: 189 DLSHNKLRTISPDDFIGLDSLKMLDI 214
++ S + L I
Sbjct: 523 KQEGLDIQKASILPVSNVTKLFTNCI 548
Score = 27.6 bits (62), Expect = 4.1
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 133 HGLSRLDLSHNKLRTISPDD-FIGLDSVTNIFELKLQHNEIENLDGAL-MG-IHGLSRLD 189
GLS L + ++ + + + ++V I +G L +G + L R +
Sbjct: 427 GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG---------EGNLWLGTLSALVRFN 477
Query: 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
TI + + +TTL S
Sbjct: 478 PEQRSFTTIEKEK-------DGTPVVSKQITTLFRDSH 508
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.0
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 26/56 (46%)
Query: 168 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+ ++ L +L KL + DS L I T+E
Sbjct: 18 EKQALKKLQASL--------------KL--YAD------DSAPALAIK----ATME 47
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 133 HGLSRLDLSHNKLRTI--SPDDFIGL--DSVTNIFELKLQHNEIENLDGALMG--IHGLS 186
GL+ + +P+D L + VT+I + + G+
Sbjct: 87 AGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGL------WVCTYYRGIE 140
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDI 214
LD++ K + L S +
Sbjct: 141 YLDIATGKFTHYNKSTVPALPSEQTWTA 168
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral
protein, hydrolase; 1.70A {Tobacco vein mottling virus}
Length = 241
Score = 28.4 bits (63), Expect = 1.5
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 126 DGALMGIHGLSRLDLSHNKLRTISPDDFI 154
DG ++GIH L+ N P+ F+
Sbjct: 160 DGNILGIHSLTHTTNGSNYFVEF-PEKFV 187
Score = 28.4 bits (63), Expect = 1.5
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 176 DGALMGIHGLSRLDLSHNKLRTISPDDFI 204
DG ++GIH L+ N P+ F+
Sbjct: 160 DGNILGIHSLTHTTNGSNYFVEF-PEKFV 187
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 27.7 bits (62), Expect = 2.2
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 60 SKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQ 118
+ F + +++ L K LR D ++ + +++N ++GVT F K++
Sbjct: 35 RRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMR 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 28.4 bits (64), Expect = 2.3
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 17/75 (22%)
Query: 127 GALMG-IHGLSRLDLSH-NKLRTISPDDFIGLDSVT----NIFELKLQHNEIEN-LDGAL 179
A++ + LS +L T ++ LD N+F+ ++ L L
Sbjct: 271 SAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALL 330
Query: 180 ------MGIHGLSRL 188
G RL
Sbjct: 331 NKCKTPQG----QRL 341
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 28.3 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 183 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
HGL+ DL R D F G+ K+ DI L+ L +
Sbjct: 294 HGLTLWDLD----REFKVDGFAGVQRKKLRDI----LSVLRDA 328
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active
protein complex; HET: EC2 EC5; 2.00A {Escherichia coli}
PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A*
1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Length = 218
Score = 27.4 bits (60), Expect = 3.3
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 54 NLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTN-- 111
NL ++P ++ + LQI K RP RP +V L+ + + + N
Sbjct: 89 NLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYR-IENPT 147
Query: 112 -----IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 149
+ L + E + + + S + T
Sbjct: 148 PYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPY 190
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 27.2 bits (60), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 126 DGALMGIHGLSRLDLSHNKLRTISPDDFI 154
DG ++GIH S ++N ++ P +F+
Sbjct: 168 DGFIVGIHSASNFTNTNNYFTSV-PKNFM 195
Score = 27.2 bits (60), Expect = 3.7
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 176 DGALMGIHGLSRLDLSHNKLRTISPDDFI 204
DG ++GIH S ++N ++ P +F+
Sbjct: 168 DGFIVGIHSASNFTNTNNYFTSV-PKNFM 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.390
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,376,168
Number of extensions: 199631
Number of successful extensions: 2806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 462
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)