RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17253
(227 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 52.7 bits (125), Expect = 8e-09
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189
+ L+ L L N + ISP + S+T + L +N++ ++ +L + ++ L
Sbjct: 304 SNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLS 357
Query: 190 LSHNKLRTISPDDFIGLDSLKMLDISHN 217
HN++ ++P L + L ++
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383
Score = 48.5 bits (114), Expect = 2e-07
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 87 LRPIDVCAPPSTLDNLKNQVQGV------TNIFELKLQHNEIENLDGALMGIHGLSRLDL 140
+ P+ + L NQ++ + TN+ +L L +N+I NL L G+ L+ L L
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKL 270
Query: 141 SHNKLRTISPDDFIGLDSVTNIF-----------------ELKLQHNEIENLDGALMGIH 183
N++ ISP + + + L L N I ++ + +
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLT 329
Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
L RL ++NK+ L ++ L HN ++ L +
Sbjct: 330 KLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLTPLAN 371
Score = 39.6 bits (91), Expect = 2e-04
Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 143 NKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 202
L + D + + + L+ I+++DG + ++ L++++ S+N+L I+P
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-- 83
Query: 203 FIGLDSLKMLDISHN 217
L L + +++N
Sbjct: 84 LKNLTKLVDILMNNN 98
Score = 33.4 bits (75), Expect = 0.018
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 150
+ L+ I+++DG + ++ L++++ S+N+L I+P
Sbjct: 44 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP 83
Score = 29.2 bits (64), Expect = 0.36
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 182 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
+ ++ L +++I ++ L++L ++ S+N LT +
Sbjct: 43 LDQVTTLQADRLGIKSIDGVEY--LNNLTQINFSNNQLTDIT 82
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 48.2 bits (114), Expect = 4e-08
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIEN 174
L L H ++ L L + ++ LDLSHN+LR + P L ++ + L+ N +EN
Sbjct: 3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALEN 57
Query: 175 LDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLEE 224
+DG L L +N+L+ + + L +L++ N L E
Sbjct: 58 VDGVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 30.5 bits (68), Expect = 0.061
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
L L+H L + L + LD+SHN L L
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA 38
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 47.1 bits (110), Expect = 5e-07
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 219
++ EL + +N++ L L RL S N L + +LK L + +N L
Sbjct: 284 PSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPL 336
Query: 220 TTLEE 224
+
Sbjct: 337 REFPD 341
Score = 47.1 bits (110), Expect = 5e-07
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 130 MGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189
L L++S+NKL + + L N + + L +L
Sbjct: 281 DLPPSLEELNVSNNKLIELP-------ALPPRLERLIASFNHLAEVPELP---QNLKQLH 330
Query: 190 LSHNKLRTISPDDFIGLDSLKM 211
+ +N LR PD ++ L+M
Sbjct: 331 VEYNPLREF-PDIPESVEDLRM 351
Score = 37.5 bits (85), Expect = 8e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 184 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L+L++ L ++ P+ L+ L S N LT L E
Sbjct: 39 QAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTELPE 75
Score = 37.1 bits (84), Expect = 0.001
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 227
L L++S+NKL + L+ L S N L + E +
Sbjct: 281 DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQ 324
Score = 36.7 bits (83), Expect = 0.001
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 134 GLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 193
L+L++ L ++ + ++ L N + L L L + +N
Sbjct: 39 QAHELELNNLGLSSLP-------ELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNN 88
Query: 194 KLRTI 198
L+ +
Sbjct: 89 NLKAL 93
Score = 27.5 bits (59), Expect = 1.6
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 190 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
N SL+ L++S+N L L
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA 301
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 44.6 bits (104), Expect = 3e-06
Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 29/154 (18%)
Query: 97 STLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 156
+ QG+ + +++ I + L L+ L L NK+ + GL
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL 194
Query: 157 DS---------------------VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 195
++ ++ EL L +N++ + G L + + L +N +
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254
Query: 196 RTISPDDFIG------LDSLKMLDISHNLLTTLE 223
I +DF S + + N + E
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 42.3 bits (98), Expect = 2e-05
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN 193
+ LDL +NK+ I DF L N+ L L +N+I + GA + L RL LS N
Sbjct: 33 TALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 194 KLRTISPDDFIGLDSLKMLDISHNLL 219
+L+ + L L++ + +
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKV 115
Score = 41.9 bits (97), Expect = 2e-05
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 138 LDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLR 196
+ S L + P D + L LQ+N+I + DG + L L L +NK+
Sbjct: 15 VQCSDLGLEKV-PKDLP-----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 197 TISPDDFIGLDSLKMLDISHNLLTTLEE 224
ISP F L L+ L +S N L L E
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPE 96
Score = 41.9 bits (97), Expect = 3e-05
Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 34/214 (15%)
Query: 7 PCTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL 66
P C+C VV+C ++ + D+ L + + + ++ F+ L
Sbjct: 5 PFRCQC-----HLRVVQCS-----DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNL 54
Query: 67 GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD 126
+ L L N + P L + L L N+++ L
Sbjct: 55 -KNLHTLILINNKIS-----------KISPGAFAPL-------VKLERLYLSKNQLKELP 95
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
+ L + N++ + F GL+ + + +GA G+ LS
Sbjct: 96 EKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 153
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
+ ++ + TI SL L + N +T
Sbjct: 154 YIRIADTNITTIPQGLP---PSLTELHLDGNKIT 184
Score = 35.4 bits (80), Expect = 0.004
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ LDL +NK+ I DF L +L L + +N ++ + +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Score = 35.0 bits (79), Expect = 0.004
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 22/107 (20%)
Query: 110 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
++ EL L +N++ + G L + + L +N + I +DF T
Sbjct: 219 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS--- 275
Query: 170 NEIENLDGALMGIHGLSRLDLSHNKLRT--ISPDDFIGLDSLKMLDI 214
+ L N ++ I P F + + +
Sbjct: 276 -----------------GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 42.1 bits (98), Expect = 9e-06
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENL 175
+L+ ++E L + + S+ L LR+ L + L + + L
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-----DLVAQNIDVVLNRRSSMAATL 57
Query: 176 DGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTTLEETSK 227
I L L+LS+N+L + +LK+L++S N L + E K
Sbjct: 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 111
Score = 32.1 bits (72), Expect = 0.024
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 154
P ++ LK + + + L + + L+ + L+ + T+ I
Sbjct: 5 KPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLR----I 59
Query: 155 GLDSVTNIFELKLQHNEIENLDGALMGIHGLSRL---DLSHNKLRTISPDDFIGLDSLKM 211
+++ + L L +N + LD + L +LS N+L++ D I L+
Sbjct: 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119
Query: 212 LDISHNLLTTLEE 224
L + N L+
Sbjct: 120 LWLDGNSLSDTFR 132
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 39.9 bits (91), Expect = 9e-05
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 177 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
G G LD+S ++ ++ L L+ + L L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKL 238
Score = 32.6 bits (72), Expect = 0.024
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L KLR I F G L+ ++IS N
Sbjct: 31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
Score = 32.2 bits (71), Expect = 0.038
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVT--NIFELK 166
G G LD+S ++ ++ L + + + LK
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 30.6 bits (67), Expect = 0.12
Identities = 7/22 (31%), Positives = 7/22 (31%)
Query: 135 LSRLDLSHNKLRTISPDDFIGL 156
L KLR I F G
Sbjct: 31 AIELRFVLTKLRVIQKGAFSGF 52
Score = 29.9 bits (65), Expect = 0.21
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 180 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
G +N L + D F G +LDIS + +L
Sbjct: 174 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218
Score = 28.0 bits (60), Expect = 0.91
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 188 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+K+ I P D + L L +++ +
Sbjct: 13 FLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGA 48
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 37.6 bits (86), Expect = 4e-04
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
KL IE LDL K+ I + LD +D S N + L+
Sbjct: 2 KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59
Query: 226 SK 227
Sbjct: 60 PL 61
Score = 33.4 bits (75), Expect = 0.012
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 105 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 150
Q EL L+ +I ++ + +D S N++R +
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 37.0 bits (84), Expect = 0.001
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 185 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
+ L LS N L T S + L L++
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Score = 36.2 bits (82), Expect = 0.002
Identities = 32/211 (15%), Positives = 52/211 (24%), Gaps = 10/211 (4%)
Query: 8 CTCKCRTSPISPIVVECEKMTSFGQVVDALQDRFGNDSISLKIAVSNLNDLPSKTFQEL- 66
C S + V C+ + + AL D+ L ++ + L T
Sbjct: 4 CEVSKVASHLE---VNCD-----KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT 55
Query: 67 GLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLD 126
L +NL + L + + +
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 127 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLS 186
+L + + + +N E G L G+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
L L N L TI P F G L + N
Sbjct: 176 TLLLQENSLYTI-PKGFFGSHLLPFAFLHGN 205
Score = 31.6 bits (70), Expect = 0.062
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 141 SHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 196
++N L + GL N+ L LQ N + + G H L L N
Sbjct: 156 ANNNLTELPAGLLNGL---ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 28.1 bits (61), Expect = 0.71
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 182 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 226
+ ++ L + PD + D +L +S NLL T +
Sbjct: 9 VASHLEVNCDKRNLTALPPD--LPKD-TTILHLSENLLYTFSLAT 50
Score = 27.8 bits (60), Expect = 0.95
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 95 PPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 146
P L+ L N+ L LQ N + + G H L L N
Sbjct: 164 PAGLLNGL-------ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 37.3 bits (84), Expect = 0.001
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLD 189
+ LD+ +L + L + ++L + +++ AL L+ L+
Sbjct: 4 IQSLDIQCEELSDARWAEL--LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 190 LSHNKL-----RTISPDDFIGLDSLKMLDISHN 217
L N+L + ++ L + +
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 35.7 bits (80), Expect = 0.003
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 161 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI----GLDSLKMLDI 214
+I L +Q E+ L + + L L D +L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 215 SHNLLT 220
N L
Sbjct: 63 RSNELG 68
Score = 34.6 bits (77), Expect = 0.007
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 107 QGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL--DSV 159
Q + + L L ++ +L L+ H L LDLS+N L +
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425
Query: 160 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 199
+ +L L L L+ LR IS
Sbjct: 426 CLLEQLVLYDIYWSEE-----MEDRLQALEKDKPSLRVIS 460
Score = 34.2 bits (76), Expect = 0.010
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 122 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSVTNIFELKLQHNEIEN-----L 175
E G L L L+ + S L + ++ EL L +N + + L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417
Query: 176 DGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 222
++ L +L L D L+ L+ L +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYW------SEEMEDRLQALEKDKPSLRVI 459
Score = 27.2 bits (58), Expect = 1.8
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 102 LKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL 145
+ + ++L + +++ AL L+ L+L N+L
Sbjct: 19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 36.7 bits (83), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 189 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 220
DL +N++ P L L L++S N L
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 33.2 bits (74), Expect = 0.021
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 160 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
N+ L L++N I L L + L L++S N L L + ++N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANN 301
Score = 27.0 bits (58), Expect = 2.1
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 110 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQ 168
N+ L L++N I L L + L L++S N L P ++
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVSAYA 299
Query: 169 HN 170
+N
Sbjct: 300 NN 301
Score = 25.5 bits (54), Expect = 5.9
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 131 GIHGLSRLDLSHNKLRTISP-DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLD 189
+ ++ LDLS L P + N + +N + + A+ + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 190 LSHNKLRTISPDDFIGLDSLKMLDISHN 217
++H + PD + +L LD S+N
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 35.8 bits (81), Expect = 0.002
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 153 FIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 212
L +++ + LK N+I ++ L + L + L +N++ +SP +L ++
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222
Query: 213 DISH 216
+++
Sbjct: 223 TLTN 226
Score = 30.0 bits (66), Expect = 0.17
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 179 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 224
L + L+ L NK+ ISP L +L + + +N ++ +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 28.8 bits (63), Expect = 0.41
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 119 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQH 169
N+I ++ L + L + L +N++ +SP L + +N+F + L +
Sbjct: 182 DNKISDISP-LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTN 226
Score = 27.7 bits (60), Expect = 0.94
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 151 DDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 210
+ ++ N ++ + + + + G++ L + TI L++L
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLI 66
Query: 211 MLDISHNLL 219
L++ N +
Sbjct: 67 GLELKDNQI 75
Score = 25.0 bits (53), Expect = 7.4
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 187 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 223
++ + + LD + L +TT+E
Sbjct: 23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE 57
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 35.5 bits (80), Expect = 0.003
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 137 RLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 196
LDL+ L D G + + + ++ + +DLS++ +
Sbjct: 4 TLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 59
Query: 197 TISPDDFIG-LDSLKMLDISHNLLT 220
+ + L+ L + L+
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLS 84
Score = 26.2 bits (56), Expect = 3.5
Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 111 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHN 170
+ + + ++ + +DLS++ + + + + + L L+
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGL 81
Query: 171 EIENLDGALMGIHGLSRL 188
+ D + + S L
Sbjct: 82 RL--SDPIVNTLAKNSNL 97
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 34.8 bits (78), Expect = 0.006
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 135 LSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 194
R+ L N++ + F ++T ++ I+ + + + +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSDNAQ 92
Query: 195 LRTISPDDFIGLDSLKMLDISHN 217
LR++ P F GL L L +
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRC 115
Score = 32.9 bits (73), Expect = 0.023
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 111 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL------------- 156
N+ L L N I ++ + A G+H L RL L N++ + P F L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 157 --------DSVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 208
+ + L+L N A L + S +++ P G
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG--- 270
Query: 209 LKMLDISHNLLT 220
+ ++ N L
Sbjct: 271 RDLKRLAANDLQ 282
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 33.9 bits (76), Expect = 0.008
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 164 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 217
EL IE +D L + L LS N + IS G+++L++L + N
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN 80
Score = 30.4 bits (67), Expect = 0.13
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 114 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 150
EL IE +D L + L LS N + IS
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS 65
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 33.1 bits (74), Expect = 0.015
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 178 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 215
L G+ L L LS N + + GL +L +L++
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208
Score = 26.5 bits (57), Expect = 2.4
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 199 SPDDFIGLDSLKMLDISHNLLTTLEE 224
GL L+ L +S N ++ L
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDLRA 195
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 29.5 bits (64), Expect = 0.31
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 183 HGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHNLLTTLEE 224
GL L L +N++ RT+ + L L+++ N + ++
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319
Score = 29.5 bits (64), Expect = 0.35
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 110 TNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIF 163
+ L+LQ+NEIE + L L+L+ N+ ++ +D + +F
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS----EEDDVVDEIREVF 328
Query: 164 ELKLQHNEIENLD 176
+ E++ LD
Sbjct: 329 STR-GRGELDELD 340
Score = 26.4 bits (56), Expect = 2.9
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 115 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSVTNIFELKLQHNEIE 173
+ + +++ L+ + + LS N + T + + S ++ +
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 174 NLDG 177
+
Sbjct: 73 RVKD 76
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 28.6 bits (62), Expect = 0.47
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 18/134 (13%)
Query: 87 LRPIDVCAPPSTLDNLKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 146
L +++ T ++ E + +G+H L L+L N++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 147 TISPDDFIGLDSVTNIFELKLQHNEIENLDGALM------------------GIHGLSRL 188
+ P F L+S+T++ N +L + +
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK 175
Query: 189 DLSHNKLRTISPDD 202
DL H++ + S +
Sbjct: 176 DLPHSEFKCSSENS 189
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 27.7 bits (60), Expect = 0.90
Identities = 32/182 (17%), Positives = 74/182 (40%), Gaps = 10/182 (5%)
Query: 46 ISLKIAVSNLNDLPSKTFQELGLQIVNLKLTKNNLRPDGAALRPIDVCAPPSTLDNLKNQ 105
+ + +N+ D S+T +L Q+ L+ + ++ ++ ++ + ++ NQ
Sbjct: 21 MKTVLGKTNVTDTVSQT--DLD-QVTTLQADRLGIK----SIDGVEYLNNLTQINFSNNQ 73
Query: 106 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFEL 165
+ +T + L + + N + + +L+ L D L ++TN+ L
Sbjct: 74 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133
Query: 166 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 225
+L N I ++ S+ + + P L +L+ LDIS N ++ +
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDISSNKVSDISVL 190
Query: 226 SK 227
+K
Sbjct: 191 AK 192
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 189
Score = 27.3 bits (60), Expect = 1.2
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 116 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSVTNIFELKLQHNEI--E 173
+LQ N I++++G+ + D +L+ I PDDF +EL L+ +EI E
Sbjct: 111 QLQLNFIKSVEGSF---NSFDAADELIEELKKIPPDDF---------YELFLRISEISFE 158
Query: 174 NLD 176
D
Sbjct: 159 EFD 161
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5
{Escherichia coli [TaxId: 562]}
Length = 293
Score = 26.2 bits (57), Expect = 3.8
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 147 TISPDDFIGLDSVTNIFELKLQHNEIENLDGALMGIHG 184
IS L ++ L + N+DG MGI G
Sbjct: 228 NISRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGG 265
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A,
NIA) {Tobacco etch virus, TEV [TaxId: 12227]}
Length = 219
Score = 25.4 bits (55), Expect = 6.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 126 DGALMGIHGLSRLDLSHNKLRTISPDDFI 154
DG ++GIH S ++N ++ P +F+
Sbjct: 158 DGFIVGIHSASNFTNTNNYFTSV-PKNFM 185
Score = 25.4 bits (55), Expect = 6.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 176 DGALMGIHGLSRLDLSHNKLRTISPDDFI 204
DG ++GIH S ++N ++ P +F+
Sbjct: 158 DGFIVGIHSASNFTNTNNYFTSV-PKNFM 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.390
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 805,860
Number of extensions: 35881
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 80
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)