Query psy17256
Match_columns 768
No_of_seqs 592 out of 3759
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:19:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4577|consensus 100.0 1.8E-36 3.8E-41 303.5 5.0 197 531-763 34-231 (383)
2 KOG1701|consensus 99.7 7.9E-19 1.7E-23 186.7 5.5 135 504-678 322-464 (468)
3 KOG0484|consensus 99.7 9.6E-18 2.1E-22 145.0 1.5 68 55-122 12-79 (125)
4 KOG2272|consensus 99.7 1.2E-17 2.7E-22 165.8 2.2 132 501-675 179-311 (332)
5 KOG0494|consensus 99.7 7.5E-17 1.6E-21 160.8 5.9 88 58-147 139-226 (332)
6 KOG1701|consensus 99.6 1.9E-17 4.2E-22 176.2 -3.6 161 532-735 276-440 (468)
7 KOG0488|consensus 99.6 1.5E-15 3.2E-20 162.7 6.8 76 55-130 167-242 (309)
8 KOG0489|consensus 99.6 2.4E-15 5.3E-20 158.5 5.6 69 57-125 156-224 (261)
9 KOG0484|consensus 99.6 6.6E-16 1.4E-20 133.7 0.8 66 695-760 13-78 (125)
10 KOG2251|consensus 99.5 9.1E-15 2E-19 144.4 8.3 68 55-122 32-99 (228)
11 KOG0850|consensus 99.5 9.8E-15 2.1E-19 144.6 5.3 70 55-124 117-186 (245)
12 KOG0485|consensus 99.5 1.6E-14 3.4E-19 141.1 6.3 71 56-126 100-170 (268)
13 KOG0850|consensus 99.5 1.2E-14 2.5E-19 144.1 5.0 72 693-764 116-187 (245)
14 KOG0843|consensus 99.5 1.6E-14 3.6E-19 137.8 4.3 64 59-122 101-164 (197)
15 KOG0843|consensus 99.5 1.6E-14 3.4E-19 137.9 4.0 65 698-762 101-165 (197)
16 KOG0842|consensus 99.5 4.5E-14 9.8E-19 148.5 7.3 71 56-126 149-219 (307)
17 KOG0487|consensus 99.5 3.7E-14 7.9E-19 149.2 6.2 69 56-124 231-299 (308)
18 KOG0488|consensus 99.5 2.5E-14 5.4E-19 153.2 4.5 67 696-762 169-235 (309)
19 KOG0842|consensus 99.5 4.5E-14 9.7E-19 148.5 5.6 72 694-765 148-219 (307)
20 KOG0485|consensus 99.5 3.4E-14 7.4E-19 138.7 3.8 65 696-760 101-165 (268)
21 KOG0489|consensus 99.4 2E-14 4.4E-19 151.5 2.2 68 697-764 157-224 (261)
22 KOG0486|consensus 99.4 7.6E-14 1.7E-18 143.7 5.4 65 59-123 111-175 (351)
23 KOG0494|consensus 99.4 6.1E-14 1.3E-18 140.2 4.4 66 697-762 139-204 (332)
24 KOG0490|consensus 99.4 8.9E-14 1.9E-18 144.6 5.5 198 536-759 2-213 (235)
25 KOG1044|consensus 99.4 5.3E-14 1.1E-18 154.7 3.9 115 528-672 130-249 (670)
26 KOG0490|consensus 99.4 3.9E-14 8.4E-19 147.4 2.5 120 621-759 1-120 (235)
27 KOG0492|consensus 99.4 6.3E-14 1.4E-18 136.2 3.4 72 55-126 139-210 (246)
28 KOG0491|consensus 99.4 7.5E-14 1.6E-18 130.9 2.2 71 58-128 98-168 (194)
29 KOG1703|consensus 99.4 8.9E-14 1.9E-18 159.1 3.1 130 503-673 349-478 (479)
30 KOG0487|consensus 99.4 2E-13 4.3E-18 143.7 5.0 67 697-763 233-299 (308)
31 KOG2251|consensus 99.4 2.1E-13 4.5E-18 134.9 4.7 68 694-761 32-99 (228)
32 KOG0848|consensus 99.4 1.1E-13 2.5E-18 139.2 2.6 68 56-123 195-262 (317)
33 KOG0493|consensus 99.4 5.8E-13 1.3E-17 133.3 5.5 63 58-120 244-306 (342)
34 PF00046 Homeobox: Homeobox do 99.3 4.6E-13 1E-17 108.0 3.4 57 61-117 1-57 (57)
35 KOG0844|consensus 99.3 6.3E-13 1.4E-17 135.6 4.2 65 56-120 177-241 (408)
36 KOG0848|consensus 99.3 2.3E-13 5.1E-18 136.9 1.0 67 697-763 197-263 (317)
37 KOG1703|consensus 99.3 3.4E-13 7.3E-18 154.4 1.1 161 530-736 303-464 (479)
38 KOG0492|consensus 99.3 1.1E-12 2.4E-17 127.6 3.8 64 696-759 141-204 (246)
39 TIGR01565 homeo_ZF_HD homeobox 99.3 2.5E-12 5.4E-17 102.9 4.9 53 60-112 1-57 (58)
40 PF00046 Homeobox: Homeobox do 99.3 1.4E-12 3E-17 105.2 1.7 57 700-756 1-57 (57)
41 KOG0844|consensus 99.2 7.9E-12 1.7E-16 127.7 3.0 66 695-760 177-242 (408)
42 KOG2272|consensus 99.2 1.8E-12 3.9E-17 129.3 -1.6 116 533-679 140-255 (332)
43 KOG0493|consensus 99.2 7.3E-12 1.6E-16 125.5 2.4 62 699-760 246-307 (342)
44 KOG4577|consensus 99.2 1.7E-11 3.8E-16 124.4 4.4 65 57-121 164-228 (383)
45 TIGR01565 homeo_ZF_HD homeobox 99.2 2.7E-11 5.7E-16 97.0 3.9 52 700-751 2-57 (58)
46 COG5576 Homeodomain-containing 99.1 3.9E-11 8.5E-16 115.9 5.7 66 58-123 49-114 (156)
47 KOG3802|consensus 99.1 5.7E-11 1.2E-15 127.4 7.5 63 58-120 292-354 (398)
48 smart00389 HOX Homeodomain. DN 99.1 3.1E-11 6.6E-16 96.8 3.6 56 61-116 1-56 (56)
49 KOG0486|consensus 99.1 2.5E-11 5.5E-16 125.3 3.9 66 697-762 110-175 (351)
50 KOG0483|consensus 99.1 2.1E-11 4.5E-16 121.8 2.6 62 700-761 51-112 (198)
51 COG5576 Homeodomain-containing 99.1 7E-11 1.5E-15 114.2 5.2 67 696-762 48-114 (156)
52 cd00086 homeodomain Homeodomai 99.1 6.2E-11 1.3E-15 96.0 3.9 57 62-118 2-58 (59)
53 KOG0847|consensus 99.1 4.5E-11 9.7E-16 117.1 2.2 66 56-121 163-228 (288)
54 PF00412 LIM: LIM domain; Int 99.1 8.2E-11 1.8E-15 95.1 2.8 57 619-676 1-57 (58)
55 KOG0491|consensus 99.0 3.5E-11 7.6E-16 113.2 0.1 65 698-762 99-163 (194)
56 KOG0847|consensus 99.0 6.6E-11 1.4E-15 116.0 1.5 63 697-759 165-227 (288)
57 KOG0483|consensus 99.0 1.1E-10 2.3E-15 116.7 2.7 56 65-120 55-110 (198)
58 KOG3802|consensus 99.0 1.8E-10 3.9E-15 123.7 4.4 64 696-759 291-354 (398)
59 smart00389 HOX Homeodomain. DN 99.0 1.1E-10 2.3E-15 93.7 2.1 55 701-755 2-56 (56)
60 cd00086 homeodomain Homeodomai 99.0 1.9E-10 4.2E-15 93.0 2.5 57 701-757 2-58 (59)
61 KOG0849|consensus 99.0 6.5E-10 1.4E-14 122.1 6.6 69 53-121 169-237 (354)
62 KOG1044|consensus 98.8 2.5E-09 5.3E-14 118.5 1.7 116 534-678 69-192 (670)
63 KOG0775|consensus 98.6 1.2E-08 2.7E-13 103.9 2.5 123 630-758 99-235 (304)
64 KOG1168|consensus 98.6 1.1E-08 2.3E-13 104.4 1.8 63 58-120 307-369 (385)
65 KOG0849|consensus 98.6 4.8E-08 1E-12 107.4 4.5 66 694-759 171-236 (354)
66 KOG0775|consensus 98.5 1.4E-07 3.1E-12 96.2 5.8 105 19-123 126-239 (304)
67 KOG1168|consensus 98.5 5.7E-08 1.2E-12 99.2 2.7 64 697-760 307-370 (385)
68 smart00132 LIM Zinc-binding do 98.2 9.7E-07 2.1E-11 64.8 2.3 37 618-654 1-37 (39)
69 KOG1700|consensus 97.9 4.8E-06 1E-10 84.6 2.0 60 618-679 110-169 (200)
70 KOG0774|consensus 97.7 4.5E-05 9.8E-10 77.4 6.0 62 60-121 188-252 (334)
71 PF00412 LIM: LIM domain; Int 97.5 1.3E-05 2.8E-10 64.5 -1.3 56 533-615 1-58 (58)
72 PF05920 Homeobox_KN: Homeobox 97.4 3.7E-05 8.1E-10 57.2 0.4 34 81-114 7-40 (40)
73 PF05920 Homeobox_KN: Homeobox 97.4 3E-05 6.6E-10 57.7 -0.2 34 720-753 7-40 (40)
74 KOG0774|consensus 97.2 0.00016 3.5E-09 73.6 2.6 59 700-758 189-250 (334)
75 KOG2252|consensus 97.2 0.00056 1.2E-08 77.0 7.0 58 58-115 418-475 (558)
76 KOG2252|consensus 97.2 0.00024 5.2E-09 79.9 3.3 58 697-754 418-475 (558)
77 KOG1146|consensus 96.2 0.015 3.3E-07 71.7 9.0 65 58-122 901-965 (1406)
78 KOG1146|consensus 95.2 0.011 2.3E-07 73.0 2.6 64 698-761 902-965 (1406)
79 KOG1702|consensus 94.7 0.0057 1.2E-07 60.6 -1.3 58 618-677 6-63 (264)
80 KOG1700|consensus 93.8 0.021 4.5E-07 58.2 0.6 59 616-676 7-65 (200)
81 smart00132 LIM Zinc-binding do 92.1 0.019 4.2E-07 41.6 -1.9 33 533-571 2-36 (39)
82 PF11569 Homez: Homeodomain le 91.5 0.066 1.4E-06 42.7 0.4 41 72-112 10-50 (56)
83 KOG0773|consensus 89.1 0.19 4.1E-06 55.6 1.6 58 699-756 239-299 (342)
84 KOG3623|consensus 88.7 0.61 1.3E-05 54.6 5.3 49 72-120 568-616 (1007)
85 PF11569 Homez: Homeodomain le 87.0 0.16 3.5E-06 40.5 -0.4 41 711-751 10-50 (56)
86 KOG3623|consensus 85.2 0.52 1.1E-05 55.2 2.3 51 711-761 568-618 (1007)
87 KOG0773|consensus 84.5 0.81 1.7E-05 50.6 3.4 57 60-116 239-298 (342)
88 PF04218 CENP-B_N: CENP-B N-te 83.6 1.1 2.3E-05 35.6 2.8 47 61-112 1-47 (53)
89 PF04218 CENP-B_N: CENP-B N-te 71.8 3 6.5E-05 33.0 2.2 46 700-750 1-46 (53)
90 PF14446 Prok-RING_1: Prokaryo 70.6 2.4 5.2E-05 33.7 1.3 39 616-654 5-51 (54)
91 PF08394 Arc_trans_TRASH: Arch 68.6 3 6.5E-05 30.5 1.4 33 619-654 1-33 (37)
92 PF10367 Vps39_2: Vacuolar sor 67.6 3.7 8.1E-05 36.9 2.2 31 616-646 78-108 (109)
93 COG4469 CoiA Competence protei 58.3 8.9 0.00019 41.6 3.2 66 395-465 25-103 (342)
94 cd01709 RT_like_1 RT_like_1: A 52.5 8 0.00017 42.6 1.8 21 262-282 292-312 (346)
95 PF09943 DUF2175: Uncharacteri 50.3 5.9 0.00013 35.7 0.3 29 618-646 4-32 (101)
96 PF06054 CoiA: Competence prot 48.6 30 0.00065 38.9 5.7 82 393-482 28-122 (375)
97 TIGR00270 conserved hypothetic 41.0 18 0.00038 35.4 2.0 25 728-752 84-108 (154)
98 PF11571 Med27: Mediator compl 38.6 9.8 0.00021 33.6 -0.1 35 610-644 48-89 (90)
99 PF04967 HTH_10: HTH DNA bindi 36.7 35 0.00075 27.2 2.7 39 67-105 1-41 (53)
100 PRK08359 transcription factor; 35.2 22 0.00049 35.5 1.8 24 728-751 100-123 (176)
101 COG1645 Uncharacterized Zn-fin 32.3 22 0.00048 33.6 1.1 22 646-673 30-51 (131)
102 PF13240 zinc_ribbon_2: zinc-r 28.5 35 0.00076 22.2 1.2 11 619-629 2-12 (23)
103 PF04967 HTH_10: HTH DNA bindi 28.1 37 0.00081 27.0 1.6 38 706-743 1-40 (53)
104 PF04423 Rad50_zn_hook: Rad50 28.1 17 0.00037 28.7 -0.4 19 392-410 17-35 (54)
105 PRK12496 hypothetical protein; 27.9 92 0.002 30.7 4.7 71 342-425 76-158 (164)
106 KOG1702|consensus 27.8 24 0.00053 35.6 0.6 17 557-573 26-42 (264)
107 KOG1280|consensus 27.4 61 0.0013 35.5 3.5 14 640-653 75-88 (381)
108 COG4847 Uncharacterized protei 26.8 21 0.00045 31.6 -0.1 18 645-662 7-24 (103)
109 PRK06424 transcription factor; 25.8 44 0.00096 32.3 2.0 25 728-752 99-123 (144)
110 PF00645 zf-PARP: Poly(ADP-rib 25.3 23 0.00051 30.4 -0.0 15 617-631 8-22 (82)
111 PF06677 Auto_anti-p27: Sjogre 22.9 48 0.001 24.9 1.2 21 647-672 20-40 (41)
112 KOG2114|consensus 21.0 39 0.00085 41.1 0.7 36 617-654 841-882 (933)
113 PF04545 Sigma70_r4: Sigma-70, 20.4 78 0.0017 24.2 2.1 38 66-108 4-41 (50)
114 PF13913 zf-C2HC_2: zinc-finge 20.1 46 0.00099 22.1 0.6 18 397-414 4-25 (25)
115 PF10668 Phage_terminase: Phag 20.0 38 0.00083 27.7 0.2 19 89-107 24-42 (60)
116 PF10083 DUF2321: Uncharacteri 20.0 59 0.0013 31.7 1.5 47 606-654 30-78 (158)
No 1
>KOG4577|consensus
Probab=100.00 E-value=1.8e-36 Score=303.54 Aligned_cols=197 Identities=34% Similarity=0.503 Sum_probs=171.4
Q ss_pred cchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchhh
Q psy17256 531 LEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVLI 610 (768)
Q Consensus 531 ~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~ 610 (768)
|.|..|.+.|.++.+.|... ..||..|+.|+.|...+. ..||.+++..| |..|
T Consensus 34 p~CagC~q~IlDrFilKvl~-----R~wHs~CLkCs~C~~qL~------------------drCFsR~~s~y----Cked 86 (383)
T KOG4577|consen 34 PICAGCDQHILDRFILKVLD-----RHWHSSCLKCSDCHDQLA------------------DRCFSREGSVY----CKED 86 (383)
T ss_pred ccccchHHHHHHHHHHHHHh-----hhhhhhhcchhhhhhHHH------------------HHHhhcCCcee----ehHH
Confidence 45999999999999887743 299999999999985433 35788888885 4589
Q ss_pred hhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeec-CcccccccccccccCCcccCCCCCC
Q psy17256 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHE-DRVLCKSHYLELVDGGTTSSDDGAD 689 (768)
Q Consensus 611 y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~-g~~~C~~~y~e~~~~~~~s~~~g~~ 689 (768)
|+++||++|.+|..+|.+...|.+|.+.+||..||.|..|+++|..|++|++.+ .++.|+.+|++.........
T Consensus 87 FfKrfGTKCsaC~~GIpPtqVVRkAqd~VYHl~CF~C~iC~R~L~TGdEFYLmeD~rLvCK~DYE~Ak~k~~~~l----- 161 (383)
T KOG4577|consen 87 FFKRFGTKCSACQEGIPPTQVVRKAQDFVYHLHCFACFICKRQLATGDEFYLMEDARLVCKDDYETAKQKHCNEL----- 161 (383)
T ss_pred HHHHhCCcchhhcCCCChHHHHHHhhcceeehhhhhhHhhhcccccCCeeEEeccceeehhhhHHHHHhcccccc-----
Confidence 999999999999999999878888999999999999999999999999999775 78999999998765432211
Q ss_pred cccccCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 690 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 690 ~~~~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
.+....||+||.||+.|++.|+..|...+.|....|++|+..+||..++|||||||||||.||.++..+.
T Consensus 162 ----~gd~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR 231 (383)
T KOG4577|consen 162 ----EGDASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGR 231 (383)
T ss_pred ----ccccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcch
Confidence 1123468999999999999999999999999999999999999999999999999999999998877654
No 2
>KOG1701|consensus
Probab=99.75 E-value=7.9e-19 Score=186.73 Aligned_cols=135 Identities=20% Similarity=0.256 Sum_probs=112.8
Q ss_pred ccccccccccccccccccccccCCccccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccc
Q psy17256 504 HLKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVK 583 (768)
Q Consensus 504 ~~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~ 583 (768)
++.|++.|+.+. ...|..|.+.|.++++.+.|+ .||+.||+|.+|.. ||
T Consensus 322 ~k~~CE~cyq~t--------------lekC~~Cg~~I~d~iLrA~Gk------ayHp~CF~Cv~C~r---~l-------- 370 (468)
T KOG1701|consen 322 GKPYCEGCYQDT--------------LEKCNKCGEPIMDRILRALGK------AYHPGCFTCVVCAR---CL-------- 370 (468)
T ss_pred CcccchHHHHHH--------------HHHHhhhhhHHHHHHHHhccc------ccCCCceEEEEecc---cc--------
Confidence 456888887762 345999999999999999999 99999999999983 32
Q ss_pred cccccCCCCcceeecccccccccchhhhhhhcccccccCCCCCCCCc-----ceeeecCceecccCccccccccccC---
Q psy17256 584 PYGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSKCCRGIASSD-----WVRKARDHVYHLACFACEACKRQLS--- 655 (768)
Q Consensus 584 ~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~C~~~I~~~e-----~~~~a~~~~~H~~CF~C~~C~~~L~--- 655 (768)
||.++....++++ ||+.||+++|++||+.|+++|.+.| .-+.++|+.||++|++|..|+.+|.
T Consensus 371 -----dgipFtvd~~n~v----~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY~CEDCg~~LS~e~ 441 (468)
T KOG1701|consen 371 -----DGIPFTVDSQNNV----YCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCYKCEDCGLLLSSEE 441 (468)
T ss_pred -----CCccccccCCCce----eeehhhhhhcCcchhhccCCccCCCCCcceEEEEEccccccccceehhhcCccccccC
Confidence 3445556666788 6789999999999999999998744 2367899999999999999999996
Q ss_pred CCCceEeecCccccccccccccc
Q psy17256 656 TGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 656 ~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
+|+.++..+|+++|+.|+...+.
T Consensus 442 e~qgCyPld~HllCk~Ch~~Rl~ 464 (468)
T KOG1701|consen 442 EGQGCYPLDGHLLCKTCHLKRLQ 464 (468)
T ss_pred CCCcceeccCceeechhhhhhhc
Confidence 56678999999999999876543
No 3
>KOG0484|consensus
Probab=99.67 E-value=9.6e-18 Score=145.02 Aligned_cols=68 Identities=40% Similarity=0.532 Sum_probs=64.0
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
...+|.||.||+||..||.+||+.|..++||++.+|++||.++.|++.+|||||||||+|.+|+.+..
T Consensus 12 ~ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~a 79 (125)
T KOG0484|consen 12 TEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERAA 79 (125)
T ss_pred hHHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999987754
No 4
>KOG2272|consensus
Probab=99.67 E-value=1.2e-17 Score=165.80 Aligned_cols=132 Identities=20% Similarity=0.344 Sum_probs=118.2
Q ss_pred hhcccccccccccccccccccccccCCccccc-hhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccc
Q psy17256 501 QEKHLKYNTAAEDLRASFTPLVCSTDGALHLE-FHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTR 579 (768)
Q Consensus 501 ~eK~~ky~~~c~~~~~~F~Pl~~s~~G~~g~~-C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r 579 (768)
+-|..+|+-+|.+. ||.+ |..|.++|-++.+.++|+ +||.++|+|+.|-.+++ |.|
T Consensus 179 evk~eLyClrChD~--------------mgipiCgaC~rpIeervi~amgK------hWHveHFvCa~CekPFl---GHr 235 (332)
T KOG2272|consen 179 EVKGELYCLRCHDK--------------MGIPICGACRRPIEERVIFAMGK------HWHVEHFVCAKCEKPFL---GHR 235 (332)
T ss_pred hhccceeccccccc--------------cCCcccccccCchHHHHHHHhcc------ccchhheeehhcCCccc---chh
Confidence 34778888888876 4544 999999999999999999 99999999999997766 454
Q ss_pred cccccccccCCCCcceeecccccccccchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCc
Q psy17256 580 QIVKPYGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEE 659 (768)
Q Consensus 580 ~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~ 659 (768)
+ |++.+.. ||+.+|+++||..|..|+..|.++ ++.|+++.|-++||.|+.|.+.|.-.++
T Consensus 236 H--------------YEkkGla----YCe~h~~qLfG~~CF~C~~~i~G~--vv~al~KawCv~cf~Cs~Cdkkl~~K~K 295 (332)
T KOG2272|consen 236 H--------------YEKKGLA----YCETHYHQLFGNLCFICNRVIGGD--VVSALNKAWCVECFSCSTCDKKLTQKNK 295 (332)
T ss_pred h--------------hhhcCch----hHHHHHHHHhhhhheecCCccCcc--HHHHhhhhhccccccccccccccccccc
Confidence 4 8888999 456899999999999999999988 8999999999999999999999998999
Q ss_pred eEeecCcccccccccc
Q psy17256 660 FALHEDRVLCKSHYLE 675 (768)
Q Consensus 660 f~~~~g~~~C~~~y~e 675 (768)
|+..|.+|.|+.||..
T Consensus 296 f~E~DmkP~CKkCy~r 311 (332)
T KOG2272|consen 296 FYEFDMKPVCKKCYDR 311 (332)
T ss_pred eeeeccchHHHHHHhh
Confidence 9999999999999963
No 5
>KOG0494|consensus
Probab=99.66 E-value=7.5e-17 Score=160.76 Aligned_cols=88 Identities=32% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCCCCCCCCCCCCC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKSSQNRPKYGYYP 137 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~~~~~p~~g~~p 137 (768)
+|+|+-||+||.-|+++||+.|...+||+...|+.||.++.|+|.+|||||||||+||||.++.|.... ....||.+.
T Consensus 139 ~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT--~maeyglyG 216 (332)
T KOG0494|consen 139 KKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGST--IMAEYGLYG 216 (332)
T ss_pred cccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcch--hhhhhcccc
Confidence 344445999999999999999999999999999999999999999999999999999999999998643 334455555
Q ss_pred CCCCCccccC
Q psy17256 138 EPNKSFLVIK 147 (768)
Q Consensus 138 ~p~~s~l~~~ 147 (768)
..+..+++..
T Consensus 217 amvrhslplp 226 (332)
T KOG0494|consen 217 AMVRHSLPLP 226 (332)
T ss_pred hhhcccCCch
Confidence 4444444433
No 6
>KOG1701|consensus
Probab=99.62 E-value=1.9e-17 Score=176.24 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=123.0
Q ss_pred chhhhhhhhhhH--HHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 532 EFHSFLKRIALV--LSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 532 ~C~~c~k~Ia~~--~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
.|..|+|.|... -..++++ .||.+||+|..|+.. |+|+ .+|..|+++|| +.
T Consensus 276 iC~~C~K~V~g~~~ac~Am~~------~fHv~CFtC~~C~r~---L~Gq--------------~FY~v~~k~~C----E~ 328 (468)
T KOG1701|consen 276 ICAFCHKTVSGQGLAVEAMDQ------LFHVQCFTCRTCRRQ---LAGQ--------------SFYQVDGKPYC----EG 328 (468)
T ss_pred hhhhcCCcccCcchHHHHhhh------hhcccceehHhhhhh---hccc--------------cccccCCcccc----hH
Confidence 599999999764 4578888 899999999999954 4555 34777888854 57
Q ss_pred hhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEee-cCcccccccccccccCCc-ccCCCC
Q psy17256 610 ICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALH-EDRVLCKSHYLELVDGGT-TSSDDG 687 (768)
Q Consensus 610 ~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~-~g~~~C~~~y~e~~~~~~-~s~~~g 687 (768)
||.. -..||..|+++|. |++++|+|+.||+.||+|.+|++.| +|..|.+. ++++||..||+..+..-- +.+..-
T Consensus 329 cyq~-tlekC~~Cg~~I~--d~iLrA~GkayHp~CF~Cv~C~r~l-dgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI 404 (468)
T KOG1701|consen 329 CYQD-TLEKCNKCGEPIM--DRILRALGKAYHPGCFTCVVCARCL-DGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPI 404 (468)
T ss_pred HHHH-HHHHHhhhhhHHH--HHHHHhcccccCCCceEEEEecccc-CCccccccCCCceeeehhhhhhcCcchhhccCCc
Confidence 7765 3469999999999 6699999999999999999999999 89999876 478999999998876422 111111
Q ss_pred CCcccccCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHH
Q psy17256 688 ADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI 735 (768)
Q Consensus 688 ~~~~~~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~ 735 (768)
.... ++.--. .+..|.+.|+.+.|-+...+..|+.+
T Consensus 405 ---~P~~--G~~etv-------Rvvamdr~fHv~CY~CEDCg~~LS~e 440 (468)
T KOG1701|consen 405 ---LPRD--GKDETV-------RVVAMDRDFHVNCYKCEDCGLLLSSE 440 (468)
T ss_pred ---cCCC--CCcceE-------EEEEccccccccceehhhcCcccccc
Confidence 1111 111111 14678999999999999999888743
No 7
>KOG0488|consensus
Probab=99.58 E-value=1.5e-15 Score=162.70 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=68.4
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCCCCCC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKSSQNR 130 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~~~~~ 130 (768)
..++|+|+.||.||..||.+||+.|+++.|++.++|.+||..|||+..||++||||||+||||+...+.......+
T Consensus 167 ~~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~~~~~~~~ 242 (309)
T KOG0488|consen 167 STPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGGELLYQAG 242 (309)
T ss_pred CCCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhhccccccc
Confidence 4458899999999999999999999999999999999999999999999999999999999999877655444443
No 8
>KOG0489|consensus
Probab=99.56 E-value=2.4e-15 Score=158.46 Aligned_cols=69 Identities=32% Similarity=0.448 Sum_probs=64.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCC
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 125 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~ 125 (768)
.++.||.||.||..|+.+||++|+.|+|++...|.|||..|.|+|+||+||||||||||||..+.....
T Consensus 156 ~~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 156 GGKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred cCCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 356789999999999999999999999999999999999999999999999999999999987776655
No 9
>KOG0484|consensus
Probab=99.55 E-value=6.6e-16 Score=133.70 Aligned_cols=66 Identities=41% Similarity=0.547 Sum_probs=63.0
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.++|++|.||.||..|+..||+.|...+||+...|++||.++.|++..|||||||||||.||+++.
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999764
No 10
>KOG2251|consensus
Probab=99.55 E-value=9.1e-15 Score=144.36 Aligned_cols=68 Identities=37% Similarity=0.507 Sum_probs=64.8
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
..++|.||.||+|+..|+++||..|.+++|||+..|++||.+|+|++.+|||||.|||+|+|++.+..
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999987764
No 11
>KOG0850|consensus
Probab=99.51 E-value=9.8e-15 Score=144.60 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=65.4
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 124 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~ 124 (768)
.+.+|.|++||+++.-||..|.+.|++++|+..++|.+||..|||+.+||+|||||||.|.||..+.+..
T Consensus 117 gk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~ 186 (245)
T KOG0850|consen 117 GKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSG 186 (245)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCC
Confidence 4567888999999999999999999999999999999999999999999999999999999998885554
No 12
>KOG0485|consensus
Probab=99.51 E-value=1.6e-14 Score=141.09 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=65.0
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 126 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~ 126 (768)
...++||.||+|+..|+..||..|+..+|++..+|..||++|.|+|+||+|||||||.||||+.....+..
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aad~ea~ 170 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAADLEAA 170 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhhhhhhh
Confidence 34578889999999999999999999999999999999999999999999999999999999877665543
No 13
>KOG0850|consensus
Probab=99.50 E-value=1.2e-14 Score=144.10 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=66.8
Q ss_pred ccCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccC
Q psy17256 693 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 764 (768)
Q Consensus 693 ~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~ 764 (768)
....+|.|++||.++.-||+.|++.|++.+|+-..+|.+||..|||+.+||||||||||.|.||.++.|+.-
T Consensus 116 Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~ 187 (245)
T KOG0850|consen 116 NGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGP 187 (245)
T ss_pred CCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCc
Confidence 344677788899999999999999999999999999999999999999999999999999999999977754
No 14
>KOG0843|consensus
Probab=99.49 E-value=1.6e-14 Score=137.79 Aligned_cols=64 Identities=36% Similarity=0.570 Sum_probs=60.7
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
+.||.||.||.+||..||.+|+.++|....+|+.||+.|+|++.||+|||||||.|.||.....
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 7888999999999999999999999999999999999999999999999999999999876553
No 15
>KOG0843|consensus
Probab=99.48 E-value=1.6e-14 Score=137.89 Aligned_cols=65 Identities=37% Similarity=0.578 Sum_probs=61.9
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+.||.||.|+.+|+..||..|..++|....+|+.||..|+|++.||+|||||||+|.||++..++
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999877743
No 16
>KOG0842|consensus
Probab=99.48 E-value=4.5e-14 Score=148.48 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=64.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 126 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~ 126 (768)
...++||.|..||..|.-+||+.|..++|++.++|++||..|.||++||||||||||-|.||+.+......
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~~~ 219 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKALEA 219 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhhhc
Confidence 35677888999999999999999999999999999999999999999999999999999999877665433
No 17
>KOG0487|consensus
Probab=99.47 E-value=3.7e-14 Score=149.22 Aligned_cols=69 Identities=22% Similarity=0.431 Sum_probs=63.0
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 124 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~ 124 (768)
..+..|++|..+|..|+.+||++|..|.|.+...|.+|++.|+|+++||+|||||||||.||..+....
T Consensus 231 ~~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r~ 299 (308)
T KOG0487|consen 231 SARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENRL 299 (308)
T ss_pred cccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhhc
Confidence 346678889999999999999999999999999999999999999999999999999999998864443
No 18
>KOG0488|consensus
Probab=99.47 E-value=2.5e-14 Score=153.25 Aligned_cols=67 Identities=28% Similarity=0.458 Sum_probs=63.4
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++|+|+.||.||..|+..||+.|++.+|.+..+|..||.+|||+..||++||||||+||||+...+.
T Consensus 169 pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~ 235 (309)
T KOG0488|consen 169 PKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGG 235 (309)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhh
Confidence 4777888999999999999999999999999999999999999999999999999999999977754
No 19
>KOG0842|consensus
Probab=99.46 E-value=4.5e-14 Score=148.51 Aligned_cols=72 Identities=22% Similarity=0.418 Sum_probs=66.2
Q ss_pred cCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccCC
Q psy17256 694 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 765 (768)
Q Consensus 694 ~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~~ 765 (768)
....++|+.|..||..|+.+||+.|.+.+|++..+|+.||..|.|+++||||||||||-|.||+++.+.+..
T Consensus 148 t~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~~~ 219 (307)
T KOG0842|consen 148 TGKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKALEA 219 (307)
T ss_pred cccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhhhc
Confidence 345677778999999999999999999999999999999999999999999999999999999988877653
No 20
>KOG0485|consensus
Probab=99.45 E-value=3.4e-14 Score=138.74 Aligned_cols=65 Identities=25% Similarity=0.472 Sum_probs=61.3
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
+.++|+.||+|+..|+..||..|+...|.+..+|..||.+|.|++.||||||||||.||||+...
T Consensus 101 ~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 101 DDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999998653
No 21
>KOG0489|consensus
Probab=99.45 E-value=2e-14 Score=151.47 Aligned_cols=68 Identities=32% Similarity=0.460 Sum_probs=64.0
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccC
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 764 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~ 764 (768)
++.||.||.||..|+.+||+.|+.|+|.++..|-+||..|.|+++||||||||||+||||..+.+...
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 45788999999999999999999999999999999999999999999999999999999998877654
No 22
>KOG0486|consensus
Probab=99.44 E-value=7.6e-14 Score=143.66 Aligned_cols=65 Identities=42% Similarity=0.595 Sum_probs=62.8
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
|+||.||.||.+|+.+||..|++|+||+...|++||.+++|+|.+|+|||.|||+||+|.++...
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999888765
No 23
>KOG0494|consensus
Probab=99.44 E-value=6.1e-14 Score=140.20 Aligned_cols=66 Identities=36% Similarity=0.450 Sum_probs=60.6
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+++|+-||.||..|+..||..|...+||+...|+.||.++.|.+..|+||||||||||||.++.-.
T Consensus 139 ~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg 204 (332)
T KOG0494|consen 139 KKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWG 204 (332)
T ss_pred cccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcC
Confidence 344445999999999999999999999999999999999999999999999999999999987644
No 24
>KOG0490|consensus
Probab=99.43 E-value=8.9e-14 Score=144.62 Aligned_cols=198 Identities=30% Similarity=0.420 Sum_probs=155.7
Q ss_pred hhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchhhhhh--
Q psy17256 536 FLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVLICFR-- 613 (768)
Q Consensus 536 c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~-- 613 (768)
|...|.+++...... ..||..|+.|..|...+. .+. .+|.+++..+ |..||.+
T Consensus 2 ~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~g~~~----~~~d~~~~~ 56 (235)
T KOG0490|consen 2 CGRQILDRYLLRVLD-----RYWHASCLKCAECDNPLG---------------VGD-TCFSKDGSIY----CKRDYQREF 56 (235)
T ss_pred CCccccchHHhhccc-----HHHHHHHHhhhhhcchhc---------------cCC-CcccCCCccc----ccccchhhh
Confidence 566777777665542 499999999999984322 111 2344466774 5589998
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecC-ccccccccccc--ccCCcccC-CC---
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHED-RVLCKSHYLEL--VDGGTTSS-DD--- 686 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g-~~~C~~~y~e~--~~~~~~s~-~~--- 686 (768)
.+..+|.+|...|...|.++++..++ |..||.|..|...+..++++.+.++ ...|..++.+. ...+.... ..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~-h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~~~~~~~~~~~~~~~~ 135 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKV-HLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEERPLPEGENLPDLSGTA 135 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCC-CcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhccccccccCCCCCCCC
Confidence 88999999999999889999999998 9999999999999999999999987 88898888654 22111111 11
Q ss_pred -----CCCcccccCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 687 -----GADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 687 -----g~~~~~~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
...........+.++.|+.+...|+..+...|...++|+...+..|+..+|++++.|++||||+|++.++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 136 PPSASRDKLDKGPSNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CccccccccccCCCccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 0111122345677888999999999999999999999999999999999999999999999999999998654
No 25
>KOG1044|consensus
Probab=99.43 E-value=5.3e-14 Score=154.73 Aligned_cols=115 Identities=21% Similarity=0.295 Sum_probs=97.8
Q ss_pred ccccc-hhhhhhhhhhH-HHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccc
Q psy17256 528 ALHLE-FHSFLKRIALV-LSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGR 605 (768)
Q Consensus 528 ~~g~~-C~~c~k~Ia~~-~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~ 605 (768)
..++. |++|...|... .++++++ +||.-||.|..|.+.+. +-++.+++.+
T Consensus 130 ~~~ps~cagc~~~lk~gq~llald~------qwhv~cfkc~~c~~vL~------------------gey~skdg~p---- 181 (670)
T KOG1044|consen 130 SYGPSTCAGCGEELKNGQALLALDK------QWHVSCFKCKSCSAVLN------------------GEYMSKDGVP---- 181 (670)
T ss_pred ccCCccccchhhhhhccceeeeecc------ceeeeeeehhhhccccc------------------ceeeccCCCc----
Confidence 34555 99999999875 4678888 99999999999996544 3456678888
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcc---ccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRV---LCKSH 672 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~---~C~~~ 672 (768)
||+.||+.+||.+|..|.+.|.+. |+.|.|+.||+.|-+|+.|+++|.+|++.++.+..+ -|+.-
T Consensus 182 yce~dy~~~fgvkc~~c~~fisgk--vLqag~kh~HPtCARCsRCgqmF~eGEEMYlQGs~iWHP~C~qa 249 (670)
T KOG1044|consen 182 YCEKDYQAKFGVKCEECEKFISGK--VLQAGDKHFHPTCARCSRCGQMFGEGEEMYLQGSEIWHPDCKQA 249 (670)
T ss_pred chhhhhhhhcCeehHHhhhhhhhh--hhhccCcccCcchhhhhhhccccccchheeeccccccCCccccc
Confidence 566999999999999999999988 999999999999999999999999999999998654 55543
No 26
>KOG0490|consensus
Probab=99.43 E-value=3.9e-14 Score=147.35 Aligned_cols=120 Identities=28% Similarity=0.464 Sum_probs=103.2
Q ss_pred cCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccCCcccCCCCCCcccccCCCccc
Q psy17256 621 KCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDGGTTSSDDGADSESSHSKSKAK 700 (768)
Q Consensus 621 ~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~~~~s~~~g~~~~~~~~~~k~r 700 (768)
+|+..|.+. ....+.+..||..|..|..|...|..+...+..+|..||..+|.. ....+++
T Consensus 1 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~------------------~~~~~~r 61 (235)
T KOG0490|consen 1 GCGRQILDR-YLLRVLDRYWHASCLKCAECDNPLGVGDTCFSKDGSIYCKRDYQR------------------EFKFSKR 61 (235)
T ss_pred CCCccccch-HHhhcccHHHHHHHHhhhhhcchhccCCCcccCCCcccccccchh------------------hhhcccc
Confidence 477777753 445666889999999999999999544555555999999999975 1135678
Q ss_pred cccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 701 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 701 r~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
+.|+.|+..|+..|++.|.+.+||+...++.||..+++++..|+|||||||+||+++++
T Consensus 62 r~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 62 CARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred ccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999874
No 27
>KOG0492|consensus
Probab=99.42 E-value=6.3e-14 Score=136.21 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=65.0
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 126 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~ 126 (768)
.+.+..|++||.||.+||..||+.|...+|+++.+|.+++..|.|+++||+|||||||+|.||.+....++.
T Consensus 139 rKhk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQeae~Ek~ 210 (246)
T KOG0492|consen 139 RKHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEAELEKL 210 (246)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHHHHHHh
Confidence 456778889999999999999999999999999999999999999999999999999999999766554443
No 28
>KOG0491|consensus
Probab=99.40 E-value=7.5e-14 Score=130.95 Aligned_cols=71 Identities=27% Similarity=0.473 Sum_probs=64.9
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCCCC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKSSQ 128 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~~~ 128 (768)
-++++-||+|+..|+..||+.|+.++|++.++|.|||..|+|+++||+.||||||||.||+.+..+.+.+.
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~p~nS~ 168 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQPKNSN 168 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 35677899999999999999999999999999999999999999999999999999999998887754433
No 29
>KOG1703|consensus
Probab=99.40 E-value=8.9e-14 Score=159.14 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=111.1
Q ss_pred cccccccccccccccccccccccCCccccchhhhhhhhhhHHHHHhhcccccccccccceEEEecccccccccccccccc
Q psy17256 503 KHLKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIV 582 (768)
Q Consensus 503 K~~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~ 582 (768)
....|+..|.... ..+.|..|.++|.++.+.+.++ .||+.||.|+.|.+.+..
T Consensus 349 ~g~~~c~~~~~~~-------------~~p~C~~C~~~i~~~~v~a~~~------~wH~~cf~C~~C~~~~~~-------- 401 (479)
T KOG1703|consen 349 DGKILCHECFHAP-------------FRPNCKRCLLPILEEGVCALGR------LWHPECFVCADCGKPLKN-------- 401 (479)
T ss_pred CCCccHHHHHHHh-------------hCccccccCCchHHhHhhhccC------eechhceeeecccCCCCC--------
Confidence 4555666665542 4677999999999999999988 999999999999754432
Q ss_pred ccccccCCCCcceeecccccccccchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEe
Q psy17256 583 KPYGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFAL 662 (768)
Q Consensus 583 ~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~ 662 (768)
..+|..++.+ ||+.||+++|+++|..|.++|...+..+++++..||..||+|..|.+.| .+..|+.
T Consensus 402 ---------~~~~~~~~~p----yce~~~~~~~~~~~~~~~~p~~~~~~~ie~~~~~~h~~~F~c~~c~~~l-~~~~~~~ 467 (479)
T KOG1703|consen 402 ---------SSFFESDGEP----YCEDHYKKLFTTKCDYCKKPVEFGSRQIEADGSPFHGDCFRCANCMKKL-TKKTFFE 467 (479)
T ss_pred ---------CcccccCCcc----chhhhHhhhccccchhccchhHhhhhHhhccCccccccceehhhhhccc-cCCceee
Confidence 4567777888 5669999999999999999999877899999999999999999999999 6778999
Q ss_pred ecCcccccccc
Q psy17256 663 HEDRVLCKSHY 673 (768)
Q Consensus 663 ~~g~~~C~~~y 673 (768)
..++++|..|+
T Consensus 468 ~~~~p~c~~~~ 478 (479)
T KOG1703|consen 468 TLDKPLCQKHF 478 (479)
T ss_pred cCCccccccCC
Confidence 99999999886
No 30
>KOG0487|consensus
Probab=99.39 E-value=2e-13 Score=143.73 Aligned_cols=67 Identities=21% Similarity=0.434 Sum_probs=61.3
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
+..|++|..+|..|+.+||+.|..|.|.+...|.+|++.|+|+++||||||||||+|.||..++...
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r~ 299 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENRL 299 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhhc
Confidence 4556678899999999999999999999999999999999999999999999999999998865443
No 31
>KOG2251|consensus
Probab=99.39 E-value=2.1e-13 Score=134.88 Aligned_cols=68 Identities=37% Similarity=0.507 Sum_probs=64.6
Q ss_pred cCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 694 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 694 ~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
..++|.+|.||.|+-.|+++||..|.+..||+...|++||.+++|.+.+|||||.|||+|+|++++..
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999998764
No 32
>KOG0848|consensus
Probab=99.39 E-value=1.1e-13 Score=139.16 Aligned_cols=68 Identities=25% Similarity=0.434 Sum_probs=62.5
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
+.+++-+-|.++|..|..+||++|.-++|..+..+.|||..|||+|+||+|||||||+|+||..+...
T Consensus 195 KtRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 195 KTRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eeecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 44566677999999999999999999999999999999999999999999999999999999877764
No 33
>KOG0493|consensus
Probab=99.36 E-value=5.8e-13 Score=133.27 Aligned_cols=63 Identities=43% Similarity=0.579 Sum_probs=58.8
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
+.-||+||.||.+||..|...|+.|+|+....|++||.+|+|.|.||+|||||+|+|.||..-
T Consensus 244 ~eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTg 306 (342)
T KOG0493|consen 244 KEEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTG 306 (342)
T ss_pred chhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccC
Confidence 345789999999999999999999999999999999999999999999999999999998543
No 34
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.35 E-value=4.6e-13 Score=108.03 Aligned_cols=57 Identities=46% Similarity=0.735 Sum_probs=55.1
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
||+|+.||.+|+..|+..|..++||+..+++.||..+||++.+|++||+|||+++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 578999999999999999999999999999999999999999999999999999886
No 35
>KOG0844|consensus
Probab=99.33 E-value=6.3e-13 Score=135.63 Aligned_cols=65 Identities=28% Similarity=0.456 Sum_probs=60.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
....-||-||.||.+|+..||+.|-+..|-+.+.|.|||..|+|+|.+|+|||||||+|+||+.-
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999754
No 36
>KOG0848|consensus
Probab=99.33 E-value=2.3e-13 Score=136.94 Aligned_cols=67 Identities=25% Similarity=0.453 Sum_probs=61.5
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
+.+-+.|.++|..|+.+||++|+-++|.....+.+||..|||++|||||||||||||+||..+.+..
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~~ 263 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKRL 263 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHHH
Confidence 3445569999999999999999999999999999999999999999999999999999999887743
No 37
>KOG1703|consensus
Probab=99.31 E-value=3.4e-13 Score=154.43 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=123.9
Q ss_pred ccchhhhhhhhhh-HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIAL-VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~-~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.+.|..|...|.+ ......++ .||+.+|.|+.|...+.- + .+...++.. ||.
T Consensus 303 ~p~c~~c~~~i~~~~~i~~~~~------~~h~~~~~c~~~~~~~~~---------------~--~~~~~~g~~----~c~ 355 (479)
T KOG1703|consen 303 RPLCLSCNQKIRSVKVIVALGK------EWHPEHFSCEVCAIVILD---------------G--GPRELDGKI----LCH 355 (479)
T ss_pred cccccccccCcccceeEeeccc------cccccceeeccccccccC---------------C--CccccCCCc----cHH
Confidence 3457778888888 88888888 999999999999854431 1 224555666 556
Q ss_pred hhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccCCcccCCCCC
Q psy17256 609 LICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDGGTTSSDDGA 688 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~~~~s~~~g~ 688 (768)
.||+..++++|.+|+++|.+. +|.|++..||++||+|..|+.+| ....|+..++.+||+.||+++......
T Consensus 356 ~~~~~~~~p~C~~C~~~i~~~--~v~a~~~~wH~~cf~C~~C~~~~-~~~~~~~~~~~pyce~~~~~~~~~~~~------ 426 (479)
T KOG1703|consen 356 ECFHAPFRPNCKRCLLPILEE--GVCALGRLWHPECFVCADCGKPL-KNSSFFESDGEPYCEDHYKKLFTTKCD------ 426 (479)
T ss_pred HHHHHhhCccccccCCchHHh--HhhhccCeechhceeeecccCCC-CCCcccccCCccchhhhHhhhccccch------
Confidence 899999999999999999965 89999999999999999999998 566789999999999999987751100
Q ss_pred CcccccCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHh
Q psy17256 689 DSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT 736 (768)
Q Consensus 689 ~~~~~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~l 736 (768)
..+. -..+-..+++.+...|+...|-+..+...|..+.
T Consensus 427 ---------~~~~-p~~~~~~~ie~~~~~~h~~~F~c~~c~~~l~~~~ 464 (479)
T KOG1703|consen 427 ---------YCKK-PVEFGSRQIEADGSPFHGDCFRCANCMKKLTKKT 464 (479)
T ss_pred ---------hccc-hhHhhhhHhhccCccccccceehhhhhccccCCc
Confidence 0011 1223356788888888888888877776665444
No 38
>KOG0492|consensus
Probab=99.30 E-value=1.1e-12 Score=127.60 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=59.9
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
.+..|.+||.||..|+..||+.|...+|.+..+|.+++..|.|++.||+|||||||||.||.+.
T Consensus 141 hk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 141 HKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999998754
No 39
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.30 E-value=2.5e-12 Score=102.90 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=50.7
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCC----CCHHHHHHHHHHcCCCcccccccccccH
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSN----PDGQDLERIAQITGLSKRVTQVWFQNSR 112 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~----p~~~~r~~la~~l~l~~~~vqvWFqNrR 112 (768)
+||.||.||.+|+..||..|+.++| |+...+++||..+||++++|+|||||.+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3789999999999999999999999 9999999999999999999999999964
No 40
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.26 E-value=1.4e-12 Score=105.23 Aligned_cols=57 Identities=46% Similarity=0.735 Sum_probs=55.0
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
++.|+.||.+|+..|+..|..++||+..+++.||..+||+..+|++||+|+|+++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567999999999999999999999999999999999999999999999999999986
No 41
>KOG0844|consensus
Probab=99.19 E-value=7.9e-12 Score=127.75 Aligned_cols=66 Identities=27% Similarity=0.453 Sum_probs=61.5
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.....||.||.||.+|+..||+.|-+..|.+...|-+||..|+|++..|||||||||+|+|||...
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 345679999999999999999999999999999999999999999999999999999999997543
No 42
>KOG2272|consensus
Probab=99.18 E-value=1.8e-12 Score=129.34 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=97.6
Q ss_pred hhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchhhhh
Q psy17256 533 FHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVLICF 612 (768)
Q Consensus 533 C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~ 612 (768)
|.+|+..|.+..+...+. .||+-+|.|+.|+..+.. |. -.++ +.+ ||..|+.
T Consensus 140 C~KCh~~iD~~~l~fr~d------~yH~yHFkCt~C~keL~s--------------da---Revk-~eL----yClrChD 191 (332)
T KOG2272|consen 140 CQKCHAHIDEQPLTFRGD------PYHPYHFKCTTCGKELTS--------------DA---REVK-GEL----YCLRCHD 191 (332)
T ss_pred hhhhhhhcccccccccCC------CCCccceecccccccccc--------------hh---hhhc-cce----ecccccc
Confidence 999999999988888888 799999999999965432 11 1222 345 4557788
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
++.-+.|..|.+||. |.++.|+|+.||++.|+|+.|.+|+ -|.+-+.+.|.+||+.||.++++.
T Consensus 192 ~mgipiCgaC~rpIe--ervi~amgKhWHveHFvCa~CekPF-lGHrHYEkkGlaYCe~h~~qLfG~ 255 (332)
T KOG2272|consen 192 KMGIPICGACRRPIE--ERVIFAMGKHWHVEHFVCAKCEKPF-LGHRHYEKKGLAYCETHYHQLFGN 255 (332)
T ss_pred ccCCcccccccCchH--HHHHHHhccccchhheeehhcCCcc-cchhhhhhcCchhHHHHHHHHhhh
Confidence 888889999999999 5699999999999999999999999 688888999999999999998864
No 43
>KOG0493|consensus
Probab=99.18 E-value=7.3e-12 Score=125.52 Aligned_cols=62 Identities=44% Similarity=0.589 Sum_probs=58.6
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
-||+||.||.+|++.|+..|+.+.|.....|.+||.+|+|.+.||+|||||+|+|.||-...
T Consensus 246 eKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgs 307 (342)
T KOG0493|consen 246 EKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGS 307 (342)
T ss_pred hcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCC
Confidence 47899999999999999999999999999999999999999999999999999999986543
No 44
>KOG4577|consensus
Probab=99.17 E-value=1.7e-11 Score=124.40 Aligned_cols=65 Identities=38% Similarity=0.607 Sum_probs=60.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
....||+||++|..||+.|..+|...+.|....|+.|+.++||..++|||||||||||.||-.+.
T Consensus 164 d~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 164 DASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred ccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhh
Confidence 44568899999999999999999999999999999999999999999999999999999986554
No 45
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.15 E-value=2.7e-11 Score=97.01 Aligned_cols=52 Identities=25% Similarity=0.442 Sum_probs=50.5
Q ss_pred ccccccccHHHHHHHhhccccCCC----CCHHHHHHHHHHhCCCCCccccccccch
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSN----PDGQDLERIAQITGLSKRVTQVWFQNSR 751 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~----p~~~~r~~LA~~lgls~~~V~vWFQNrR 751 (768)
+|.||.||.+|+..|+..|..+.| |+...+.+||..+||++++|+|||||.+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 788999999999999999999999 9999999999999999999999999975
No 46
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.15 E-value=3.9e-11 Score=115.92 Aligned_cols=66 Identities=30% Similarity=0.509 Sum_probs=59.2
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
...+++|++.|..|+.+|++.|+.++||+..+|.+|+..++|+++.|||||||||++.|+......
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 345666777899999999999999999999999999999999999999999999999998765543
No 47
>KOG3802|consensus
Probab=99.15 E-value=5.7e-11 Score=127.42 Aligned_cols=63 Identities=29% Similarity=0.502 Sum_probs=60.0
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.|+||+||.|+......||+.|.+|+.|+..+...||.+|+|...+|+|||+|||.|.||...
T Consensus 292 ~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 292 SRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 378889999999999999999999999999999999999999999999999999999999655
No 48
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.13 E-value=3.1e-11 Score=96.85 Aligned_cols=56 Identities=46% Similarity=0.734 Sum_probs=52.5
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
++.|+.|+..|+..|++.|..++||+..++..||..+||+..+|+.||+|||++.+
T Consensus 1 ~k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 1 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 35678899999999999999999999999999999999999999999999998754
No 49
>KOG0486|consensus
Probab=99.13 E-value=2.5e-11 Score=125.29 Aligned_cols=66 Identities=42% Similarity=0.597 Sum_probs=62.4
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+|++|.||.|+..|++.||..|+++.||+..+|++||..++|++..|+|||.|||+||||++....
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 378899999999999999999999999999999999999999999999999999999999976544
No 50
>KOG0483|consensus
Probab=99.12 E-value=2.1e-11 Score=121.78 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=57.1
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
.+++.+++.+|+..||..|+.+.+.....+..||.+|||.++||.|||||||||||.++...
T Consensus 51 ~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~ 112 (198)
T KOG0483|consen 51 KGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEK 112 (198)
T ss_pred ccccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhh
Confidence 44456799999999999999999999999999999999999999999999999999987654
No 51
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.10 E-value=7e-11 Score=114.17 Aligned_cols=67 Identities=30% Similarity=0.502 Sum_probs=61.0
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
.+..++.|++-+.+|+.+|++.|..++||+...|..|+..++|+++.||+||||||++.|+....+.
T Consensus 48 s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 48 SSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred CCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 3556777888999999999999999999999999999999999999999999999999999766544
No 52
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.10 E-value=6.2e-11 Score=95.98 Aligned_cols=57 Identities=40% Similarity=0.711 Sum_probs=54.0
Q ss_pred CCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 62 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 62 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||+|||.+.++.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999999999999999999999999998763
No 53
>KOG0847|consensus
Probab=99.07 E-value=4.5e-11 Score=117.11 Aligned_cols=66 Identities=29% Similarity=0.466 Sum_probs=61.4
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
+.++++..|.+|+..|+..||..|+..+|+..++|.+||..+||++.+|+|||||||.||||+...
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 457778889999999999999999999999999999999999999999999999999999996543
No 54
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=99.05 E-value=8.2e-11 Score=95.11 Aligned_cols=57 Identities=30% Similarity=0.736 Sum_probs=51.7
Q ss_pred cccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccc
Q psy17256 619 CSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676 (768)
Q Consensus 619 C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~ 676 (768)
|.+|+++|.+.+.++.+.|+.||.+||+|..|+++|..+. |+..++++||+.||.++
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~-~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECFKCSKCGKPLNDGD-FYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTSBETTTTCBTTTSS-EEEETTEEEEHHHHHHH
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccccccCCCCCccCCCe-eEeECCEEECHHHHhhh
Confidence 8899999999888888999999999999999999996554 99999999999999754
No 55
>KOG0491|consensus
Probab=99.04 E-value=3.5e-11 Score=113.21 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=60.6
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++++.||+|+..|+..|++.|+...|.+..++.+||..|+|++.||+.||||||+|.||+++...
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 34667999999999999999999999999999999999999999999999999999999877654
No 56
>KOG0847|consensus
Probab=99.03 E-value=6.6e-11 Score=115.95 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=58.4
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
++++..|..|+..|+..|+..|.+.+|+-..++.+||..+||++.+|+|||||||+||||+..
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 445666889999999999999999999999999999999999999999999999999999743
No 57
>KOG0483|consensus
Probab=99.02 E-value=1.1e-10 Score=116.75 Aligned_cols=56 Identities=32% Similarity=0.529 Sum_probs=52.9
Q ss_pred ccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.+|+.+|...||..|+.+.++.+..+..||..|||.++||.||||||||+||.+..
T Consensus 55 ~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kql 110 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQL 110 (198)
T ss_pred ccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhh
Confidence 35999999999999999999999999999999999999999999999999998644
No 58
>KOG3802|consensus
Probab=99.02 E-value=1.8e-10 Score=123.68 Aligned_cols=64 Identities=28% Similarity=0.502 Sum_probs=60.5
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
..++|++||.|.......||..|.+|+.|+..+...||.+|+|+..+|+|||+|||.|.||...
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 3467888999999999999999999999999999999999999999999999999999999876
No 59
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.02 E-value=1.1e-10 Score=93.66 Aligned_cols=55 Identities=47% Similarity=0.731 Sum_probs=51.9
Q ss_pred cccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHH
Q psy17256 701 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 755 (768)
Q Consensus 701 r~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~k 755 (768)
+.|+.++.+|+..|+..|..++||+..++..||..+||+..+|++||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4577899999999999999999999999999999999999999999999998854
No 60
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.98 E-value=1.9e-10 Score=93.04 Aligned_cols=57 Identities=40% Similarity=0.711 Sum_probs=53.9
Q ss_pred cccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 701 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 701 r~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
+.|+.++..++..|+..|..++||+..++..||..+||+..+|++||+|||++.++.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999999999999998864
No 61
>KOG0849|consensus
Probab=98.97 E-value=6.5e-10 Score=122.08 Aligned_cols=69 Identities=35% Similarity=0.516 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 53 SSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 53 ~~~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.....++.+|.||+|+..|+..||+.|++++||++..|++||.++++++.+|+|||+|||++++|+...
T Consensus 169 ~~~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~~ 237 (354)
T KOG0849|consen 169 GYALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHRD 237 (354)
T ss_pred cccccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcccc
Confidence 334567788889999999999999999999999999999999999999999999999999999998743
No 62
>KOG1044|consensus
Probab=98.75 E-value=2.5e-09 Score=118.52 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=84.8
Q ss_pred hhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchhhhh-
Q psy17256 534 HSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVLICF- 612 (768)
Q Consensus 534 ~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~- 612 (768)
..|..-|.+....++|+ .+|..||+|++|+.+... |....+. +.... |+.|-.
T Consensus 69 ~~c~~~~~gevvsa~gk------tyh~~cf~cs~ck~pf~~---------------g~~vt~~-gk~~~----c~~c~~~ 122 (670)
T KOG1044|consen 69 DDCRAFVEGEVVSTLGK------TYHPKCFSCSTCKSPFKS---------------GDKVTFS-GKECL----CQTCSQP 122 (670)
T ss_pred cchhhhccceeEecccc------eeccccceecccCCCCCC---------------CCeeeec-chhhh----hhhhcCc
Confidence 45666677778888898 999999999999976442 2221111 11222 233321
Q ss_pred -------hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 -------RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 -------~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
..+-.-|++|++.|..+ .++.|+++.||+.||.|..|...| .| +|..++|.+||+.||.+.+.
T Consensus 123 ~~~~p~~~~~ps~cagc~~~lk~g-q~llald~qwhv~cfkc~~c~~vL-~g-ey~skdg~pyce~dy~~~fg 192 (670)
T KOG1044|consen 123 MPVSPAESYGPSTCAGCGEELKNG-QALLALDKQWHVSCFKCKSCSAVL-NG-EYMSKDGVPYCEKDYQAKFG 192 (670)
T ss_pred ccCCcccccCCccccchhhhhhcc-ceeeeeccceeeeeeehhhhcccc-cc-eeeccCCCcchhhhhhhhcC
Confidence 12334899999999875 577899999999999999999999 45 48889999999999987653
No 63
>KOG0775|consensus
Probab=98.63 E-value=1.2e-08 Score=103.85 Aligned_cols=123 Identities=23% Similarity=0.327 Sum_probs=90.1
Q ss_pred cceeeecCce-ecccCccccccccccCCCCceEee----cCcccccccccccccCCcccCCCCCCcccccCCCccccccc
Q psy17256 630 DWVRKARDHV-YHLACFACEACKRQLSTGEEFALH----EDRVLCKSHYLELVDGGTTSSDDGADSESSHSKSKAKRVRT 704 (768)
Q Consensus 630 e~~~~a~~~~-~H~~CF~C~~C~~~L~~G~~f~~~----~g~~~C~~~y~e~~~~~~~s~~~g~~~~~~~~~~k~rr~Rt 704 (768)
|.|++|...+ ||..-|.=-. .|.+...|... --.++-+.||.|... ..+.+-+.+....-++|-.-+||
T Consensus 99 EsvLkArA~vafH~gnf~eLY---~iLE~h~Fs~~~h~~LQ~lWl~AhY~EAek---~RGR~LgaV~KYRvRrKfPlPrT 172 (304)
T KOG0775|consen 99 ESVLKARAVVAFHSGNFRELY---HILENHKFSPHNHPKLQALWLKAHYKEAEK---LRGRPLGAVDKYRVRRKFPLPRT 172 (304)
T ss_pred HHHHHHHHHHHHhcccHHHHH---HHHHhccCChhhhHHHHHHHHHHHHHHHHH---hcCCcCCccccceeeccCCCCCc
Confidence 5567776544 7877763110 00122223222 124677888876543 45566666777777888888999
Q ss_pred cccHHH---------HHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 705 TFTEEQ---------LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 705 ~~s~~Q---------l~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
.+.++| ...|+.+|..++||+..++.+||+.+||+..||-+||+|||+|+|-..
T Consensus 173 IWDGEet~yCFKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa~~ 235 (304)
T KOG0775|consen 173 IWDGEETVYCFKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRAAA 235 (304)
T ss_pred cccCceeeeehhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhhcc
Confidence 999987 457999999999999999999999999999999999999999999443
No 64
>KOG1168|consensus
Probab=98.63 E-value=1.1e-08 Score=104.43 Aligned_cols=63 Identities=33% Similarity=0.582 Sum_probs=58.5
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
..+||+||.+..-....||++|..++.|+......||++|+|...+|+|||+|.|+|.||...
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~ 369 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKR 369 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhh
Confidence 456788999999999999999999999999999999999999999999999999999998544
No 65
>KOG0849|consensus
Probab=98.55 E-value=4.8e-08 Score=107.42 Aligned_cols=66 Identities=36% Similarity=0.547 Sum_probs=62.1
Q ss_pred cCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 694 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 694 ~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
...++.+|.||.|+..|+..|+..|+.++||+...|+.||.++++++..|+|||+|||+||+|+..
T Consensus 171 ~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 171 ALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred cccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 456777888999999999999999999999999999999999999999999999999999999873
No 66
>KOG0775|consensus
Probab=98.49 E-value=1.4e-07 Score=96.22 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=77.6
Q ss_pred cCCHHHHHHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCHHH---------HHHHHHhhhhCCCCCHHH
Q psy17256 19 TFTEEQLQVLQANFQLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQ---------LQVLQANFQLDSNPDGQD 89 (768)
Q Consensus 19 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~Rt~~t~~Q---------l~~Le~~F~~~~~p~~~~ 89 (768)
.|+......||.++-...|-+.....+..-+....-.-++|-.-+||+...+| ...|...|..++||+..+
T Consensus 126 ~Fs~~~h~~LQ~lWl~AhY~EAek~RGR~LgaV~KYRvRrKfPlPrTIWDGEet~yCFKekSR~~LrewY~~~~YPsp~e 205 (304)
T KOG0775|consen 126 KFSPHNHPKLQALWLKAHYKEAEKLRGRPLGAVDKYRVRRKFPLPRTIWDGEETVYCFKEKSRSLLREWYLQNPYPSPRE 205 (304)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHhcCCcCCccccceeeccCCCCCccccCceeeeehhHhhHHHHHHHHhcCCCCChHH
Confidence 46666677777766666665544444444444344344555566688766655 577999999999999999
Q ss_pred HHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 90 LERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 90 r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
+.+||+.+||+..||-.||.|||+++|-......
T Consensus 206 KReLA~aTgLt~tQVsNWFKNRRQRDRa~~ak~~ 239 (304)
T KOG0775|consen 206 KRELAEATGLTITQVSNWFKNRRQRDRAAAAKNS 239 (304)
T ss_pred HHHHHHHhCCchhhhhhhhhhhhhhhhhcccccc
Confidence 9999999999999999999999999995544433
No 67
>KOG1168|consensus
Probab=98.49 E-value=5.7e-08 Score=99.24 Aligned_cols=64 Identities=33% Similarity=0.580 Sum_probs=59.6
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
..+||+||.|..-+...||.+|...+.|+.+....||.+|+|...+|+|||+|.|+|.||....
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~~S 370 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKRS 370 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhhhh
Confidence 4578899999999999999999999999999999999999999999999999999999986543
No 68
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=98.17 E-value=9.7e-07 Score=64.82 Aligned_cols=37 Identities=35% Similarity=0.845 Sum_probs=34.2
Q ss_pred ccccCCCCCCCCcceeeecCceecccCcccccccccc
Q psy17256 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQL 654 (768)
Q Consensus 618 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L 654 (768)
+|.+|+++|.+.+.++.+.++.||..||+|..|+++|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECFKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCCCCcccCCcC
Confidence 6899999999866788899999999999999999998
No 69
>KOG1700|consensus
Probab=97.89 E-value=4.8e-06 Score=84.58 Aligned_cols=60 Identities=28% Similarity=0.707 Sum_probs=47.7
Q ss_pred ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 618 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
.|..|.+.+.+.|. +.+.+..||..||.|..|+..|..+ .+...++.+||..++..+..+
T Consensus 110 ~c~~c~k~vy~~Ek-~~~~~~~~hk~cfrc~~~~~~ls~~-~~~~~~g~l~~~~~~~~~~~~ 169 (200)
T KOG1700|consen 110 KCARCQKTVYPLEK-VTGNGLEFHKSCFRCTHCGKKLSPK-NYAALEGVLYCKHHFAQLFKG 169 (200)
T ss_pred ccccccceeeehHH-HhhhhhhhhhhheeecccccccCCc-chhhcCCccccchhhheeecC
Confidence 68888888876544 3356788999999999999999654 578888999999988775543
No 70
>KOG0774|consensus
Probab=97.74 E-value=4.5e-05 Score=77.45 Aligned_cols=62 Identities=26% Similarity=0.484 Sum_probs=56.0
Q ss_pred CCCCCccCCHHHHHHHHHhhh---hCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQ---LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~---~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.||+|..|+..-.++|..+|. .|+||+..++++||.+.+++..||-.||.|.|-++||..-.
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k 252 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGK 252 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhh
Confidence 466788899999999999995 78999999999999999999999999999999998886443
No 71
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=97.51 E-value=1.3e-05 Score=64.54 Aligned_cols=56 Identities=16% Similarity=-0.069 Sum_probs=42.1
Q ss_pred hhhhhhhhhhHHHH--HhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchhh
Q psy17256 533 FHSFLKRIALVLSE--KWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVLI 610 (768)
Q Consensus 533 C~~c~k~Ia~~~~~--~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~ 610 (768)
|..|.+.|.+.... +.|+ .||+.||.|+.|+..+. ++ .++..++.+| |..|
T Consensus 1 C~~C~~~I~~~~~~~~~~~~------~~H~~Cf~C~~C~~~l~---------------~~--~~~~~~~~~~----C~~c 53 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGK------FWHPECFKCSKCGKPLN---------------DG--DFYEKDGKPY----CKDC 53 (58)
T ss_dssp BTTTSSBESSSSEEEEETTE------EEETTTSBETTTTCBTT---------------TS--SEEEETTEEE----EHHH
T ss_pred CCCCCCCccCcEEEEEeCCc------EEEccccccCCCCCccC---------------CC--eeEeECCEEE----CHHH
Confidence 67788888865444 6676 99999999999996543 12 2678888885 5589
Q ss_pred hhhhc
Q psy17256 611 CFRSF 615 (768)
Q Consensus 611 y~~~f 615 (768)
|.++|
T Consensus 54 ~~~~f 58 (58)
T PF00412_consen 54 YQKRF 58 (58)
T ss_dssp HHHHT
T ss_pred HhhhC
Confidence 98876
No 72
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.43 E-value=3.7e-05 Score=57.20 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=28.9
Q ss_pred hCCCCCHHHHHHHHHHcCCCcccccccccccHHH
Q psy17256 81 LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRAR 114 (768)
Q Consensus 81 ~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak 114 (768)
.+|||+..++++||..+||+..||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999998864
No 73
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.42 E-value=3e-05 Score=57.67 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCccccccccchhH
Q psy17256 720 LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRAR 753 (768)
Q Consensus 720 ~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak 753 (768)
.++||+..++..||.++||+..||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4789999999999999999999999999998865
No 74
>KOG0774|consensus
Probab=97.24 E-value=0.00016 Score=73.55 Aligned_cols=59 Identities=25% Similarity=0.502 Sum_probs=54.5
Q ss_pred ccccccccHHHHHHHhhccc---cCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 700 KRVRTTFTEEQLQVLQANFQ---LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~---~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
+|+|..|+..-.++|..+|. .++||+...+++||++.+++..||-.||.|+|-++||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 67788899999999999985 488999999999999999999999999999999998864
No 75
>KOG2252|consensus
Probab=97.24 E-value=0.00056 Score=77.01 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=53.8
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHH
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~ 115 (768)
...||+|.+||..|...|...|+.+++|+....+.|+.+|+|..++|.+||-|-|.+.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 4556779999999999999999999999999999999999999999999999987764
No 76
>KOG2252|consensus
Probab=97.18 E-value=0.00024 Score=79.90 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=54.0
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHH
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~ 754 (768)
-..|++|.+||..|...|...|+.+++|+......|+.+|+|....|.+||.|-|.|.
T Consensus 418 ~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 418 LQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred ccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 3457779999999999999999999999999999999999999999999999988774
No 77
>KOG1146|consensus
Probab=96.19 E-value=0.015 Score=71.67 Aligned_cols=65 Identities=37% Similarity=0.574 Sum_probs=59.2
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
-.+|+.||.++..||..+...|....||...+-+.|-..++++.+.|+|||||-|+|.++..-+.
T Consensus 901 ~~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 901 MGRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred hhhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc
Confidence 35677899999999999999999999999999999999999999999999999999999865533
No 78
>KOG1146|consensus
Probab=95.22 E-value=0.011 Score=72.96 Aligned_cols=64 Identities=38% Similarity=0.590 Sum_probs=59.2
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
-+++.|+.++..|+..+...|....+|...+.+.|...++++.++|+|||||-|+|.||....+
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc
Confidence 3577899999999999999999999999999999999999999999999999999999976544
No 79
>KOG1702|consensus
Probab=94.69 E-value=0.0057 Score=60.57 Aligned_cols=58 Identities=26% Similarity=0.575 Sum_probs=44.5
Q ss_pred ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccc
Q psy17256 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELV 677 (768)
Q Consensus 618 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~ 677 (768)
-|..|++.+.+-|. ++.+++.||..||.|..|+..|. =..+-.-+-++||..||...+
T Consensus 6 n~~~cgk~vYPvE~-v~cldk~whk~cfkce~c~mtln-mKnyKgy~kkpycn~hYpkq~ 63 (264)
T KOG1702|consen 6 NREDCGKTVYPVEE-VKCLDKVWHKQCFKCEVCGMTLN-MKNYKGYDKKPYCNPHYPKQV 63 (264)
T ss_pred hhhhhccccccHHH-HhhHHHHHHHHhheeeeccCChh-hhhccccccCCCcCcccccce
Confidence 46678888877544 56789999999999999999883 233444567899999997543
No 80
>KOG1700|consensus
Probab=93.81 E-value=0.021 Score=58.25 Aligned_cols=59 Identities=27% Similarity=0.594 Sum_probs=47.6
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~ 676 (768)
+.+|..|++.+.-.+.+. ..+..||..||.|..|...|.. ..+..+++.+||+.+|-..
T Consensus 7 ~~kc~~c~k~vy~~e~~~-~~g~~~hk~c~~c~~~~k~l~~-~~~~~~e~~~yc~~~~~~~ 65 (200)
T KOG1700|consen 7 TDKCNACGKTVYFVEKVQ-KDGVDFHKECFKCEKCKKTLTL-SGYSEHEGVPYCKNCHVAQ 65 (200)
T ss_pred cchhhhccCcchHHHHHh-ccCcchhhhHHhcccccccccc-ccccccccccccccchHhh
Confidence 358999999998765544 7788999999999999999954 4466689999999965433
No 81
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=92.08 E-value=0.019 Score=41.61 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=25.7
Q ss_pred hhhhhhhhhh--HHHHHhhcccccccccccceEEEeccccc
Q psy17256 533 FHSFLKRIAL--VLSEKWKKMYGHVLSWLRVRTEFSILKAV 571 (768)
Q Consensus 533 C~~c~k~Ia~--~~~~~~~~~~s~~~~wh~~~~~c~~c~~~ 571 (768)
|..|.+.|.+ ..+...++ .||+.||.|..|+..
T Consensus 2 C~~C~~~i~~~~~~~~~~~~------~~H~~Cf~C~~C~~~ 36 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGK------VWHPECFKCSKCGKP 36 (39)
T ss_pred ccccCCcccCCcEEEEeCCc------cccccCCCCcccCCc
Confidence 6778888877 34445555 999999999999854
No 82
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=91.46 E-value=0.066 Score=42.68 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.1
Q ss_pred HHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccH
Q psy17256 72 LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 112 (768)
Q Consensus 72 l~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrR 112 (768)
+..|++.|...+++.......|..+.+|+..+|+.||.-|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999997654
No 83
>KOG0773|consensus
Probab=89.06 E-value=0.19 Score=55.65 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=48.2
Q ss_pred cccccccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
.+|++..+......+|+.+... .+||+..++..||.++||+..||.+||-|.|-|..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCC
Confidence 4555667888888888876433 579999999999999999999999999999887554
No 84
>KOG3623|consensus
Probab=88.69 E-value=0.61 Score=54.57 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=45.2
Q ss_pred HHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 72 LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 72 l~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
+..|...|..|..|+..+...+|.+.|++.+.|++||++++++.....+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~r 616 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVER 616 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhcc
Confidence 7788999999999999999999999999999999999999998876544
No 85
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=87.02 E-value=0.16 Score=40.49 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccch
Q psy17256 711 LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 751 (768)
Q Consensus 711 l~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrR 751 (768)
++-|+++|....++.......|..+.+|+..||+.||--|+
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 45699999999999999999999999999999999996543
No 86
>KOG3623|consensus
Probab=85.19 E-value=0.52 Score=55.15 Aligned_cols=51 Identities=27% Similarity=0.512 Sum_probs=46.1
Q ss_pred HHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 711 LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 711 l~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
...|..+|..|.+|+..+...+|.+.|++-+.|++||++++++...-+..-
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~rsp 618 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVERSP 618 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhccCc
Confidence 788999999999999999999999999999999999999999877655433
No 87
>KOG0773|consensus
Probab=84.46 E-value=0.81 Score=50.64 Aligned_cols=57 Identities=28% Similarity=0.437 Sum_probs=46.9
Q ss_pred CCCCCccCCHHHHHHHHHhh-h--hCCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 60 AKRVRTTFTEEQLQVLQANF-Q--LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F-~--~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
..|++..+......+|+... + ..+||+...+..||.++||+..||-.||-|.|-+..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w 298 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLW 298 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccC
Confidence 44556688888888888663 2 357999999999999999999999999999887544
No 88
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=83.58 E-value=1.1 Score=35.57 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=36.0
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccH
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 112 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrR 112 (768)
||+|..+|-++-..+-..++.+. ...+||..+|++..+|..|..|+.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 46788999999888888888775 578899999999999999998843
No 89
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=71.79 E-value=3 Score=33.03 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=34.0
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccc
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNS 750 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNr 750 (768)
+++|..+|-++...+-..++.+. ....+|..+|++..+|.-|..|+
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46788999988777777777775 57889999999999999999884
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.57 E-value=2.4 Score=33.69 Aligned_cols=39 Identities=26% Similarity=0.632 Sum_probs=27.8
Q ss_pred ccccccCCCCCCCCcceee--ecCceecccCc----cccc--ccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRK--ARDHVYHLACF----ACEA--CKRQL 654 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~--a~~~~~H~~CF----~C~~--C~~~L 654 (768)
+.+|..|+++|..+|-++. .-+..||.+|+ .|.. |+..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEeccCCCCc
Confidence 5799999999975554444 34788999998 4655 55443
No 91
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=68.59 E-value=3 Score=30.55 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=24.4
Q ss_pred cccCCCCCCCCcceeeecCceecccCcccccccccc
Q psy17256 619 CSKCCRGIASSDWVRKARDHVYHLACFACEACKRQL 654 (768)
Q Consensus 619 C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L 654 (768)
|.-||+.|.+.-.+++..++.||.- |..|...|
T Consensus 1 Cd~CG~~I~~eP~~~k~~~~~y~fC---C~tC~~~f 33 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKIGNKVYYFC---CPTCLSQF 33 (37)
T ss_pred CCccCCcccCCEEEEEECCeEEEEE---CHHHHHHH
Confidence 6789999998766777889999954 45555544
No 92
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=67.64 E-value=3.7 Score=36.89 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=23.9
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCcc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFA 646 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~ 646 (768)
...|..|+++|..+..++-..|..+|..|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3589999999988655555567789999873
No 93
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=58.32 E-value=8.9 Score=41.65 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCcCCCCCCCCCc------------chhhcccCC-CccccchhhHHHHHHHHHhhhhccccccccccCCCCCCcccccce
Q psy17256 395 PTYCDGCGGEMSV------------THALNCKKG-GLVKHGHDYLRDECIMMASYAWNGIVKEPIMRDSSSTSPALIADF 461 (768)
Q Consensus 395 ~~~C~~c~~~~~~------------~H~l~C~~~-~~~~~rHn~ird~~~~~~~~~~~~v~~eP~~~~~~~~~~~~~~Di 461 (768)
+..|++||+..-+ -|.-.|.-- -+-+.-|=+....++.++..-+..|..||.+.+.. -||||
T Consensus 25 ~ffCPaC~~~l~lK~G~~k~pHFAHk~l~~C~~~~EnES~~HL~~Kr~Lyqwlk~q~~~VelE~Ylpeik-----Q~pDi 99 (342)
T COG4469 25 RFFCPACGSQLILKQGLIKIPHFAHKSLKACAFFNENESEEHLKGKRQLYQWLKRQGCKVELEPYLPEIK-----QRPDI 99 (342)
T ss_pred ccccCCCCCeeeeecCccccchhhhhhhhhccccCCCCCHHHHHhHHHHHHHHHhcCCceeeecccHhhh-----hCcce
Confidence 3689999998765 334568864 36778899999999999999999999999998764 79999
Q ss_pred Eecc
Q psy17256 462 KING 465 (768)
Q Consensus 462 ~~~g 465 (768)
.|++
T Consensus 100 lvn~ 103 (342)
T COG4469 100 LVND 103 (342)
T ss_pred Eecc
Confidence 9996
No 94
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=52.55 E-value=8 Score=42.57 Aligned_cols=21 Identities=33% Similarity=0.863 Sum_probs=18.7
Q ss_pred ccccccccccCCCCCCChhhh
Q psy17256 262 HELFHLPTRFGGLGINDPVET 282 (768)
Q Consensus 262 r~~~sLP~r~GGlgi~~p~~~ 282 (768)
-.+|.+|+-+|||||.||-..
T Consensus 292 dg~~~~P~~lGGL~l~nPfi~ 312 (346)
T cd01709 292 DGFFYFPEELGGLGLKNPFIS 312 (346)
T ss_pred chheeChhhcCCcccCCcchh
Confidence 478999999999999999854
No 95
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=50.28 E-value=5.9 Score=35.68 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCcceeeecCceecccCcc
Q psy17256 618 KCSKCCRGIASSDWVRKARDHVYHLACFA 646 (768)
Q Consensus 618 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~ 646 (768)
+|.-|+++|..++.+--..+.+-|-+||.
T Consensus 4 kC~iCg~~I~~gqlFTF~~kG~VH~~C~~ 32 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKKGPVHYECFR 32 (101)
T ss_pred EEEecCCeeeecceEEEecCCcEeHHHHH
Confidence 57778887777655444444556777774
No 96
>PF06054 CoiA: Competence protein CoiA-like family; InterPro: IPR010330 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Many of the members of this family are described as transcription factors. CoiA falls within a competence-specific operon in Streptococcus. CoiA is an uncharacterised protein.
Probab=48.58 E-value=30 Score=38.88 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=62.7
Q ss_pred CCCCcCCCCCCCCCc----------chh--hccc-CCCccccchhhHHHHHHHHHhhhhccccccccccCCCCCCccccc
Q psy17256 393 GLPTYCDGCGGEMSV----------THA--LNCK-KGGLVKHGHDYLRDECIMMASYAWNGIVKEPIMRDSSSTSPALIA 459 (768)
Q Consensus 393 ~~~~~C~~c~~~~~~----------~H~--l~C~-~~~~~~~rHn~ird~~~~~~~~~~~~v~~eP~~~~~~~~~~~~~~ 459 (768)
.-...|+.||.+.-+ .|. -.|. .+..-+..|-...-.++.+++..+..|.-|+.+.+. ..||
T Consensus 28 ~~~~~CP~C~~~v~lk~G~~k~~HFAH~~~~~c~~~~~~ES~~Hl~~K~~l~~~l~~~~~~v~lE~~l~~~-----~qra 102 (375)
T PF06054_consen 28 KGKYFCPGCGEPVILKKGKKKIPHFAHKSKSDCPFFSEGESEEHLQGKELLYQWLKRQGFPVELEVYLPEI-----QQRA 102 (375)
T ss_pred CCcEECCCCCCeeEEEEcCcccceeeecCCCCCCcccCCchHHHHHHHHHHHHHHHhcCCceEEeeecCCC-----ceec
Confidence 567899999999876 333 3466 457788899999999999999988889999988554 4799
Q ss_pred ceEeccccccCceEEEeEEEeCC
Q psy17256 460 DFKINGVWEAGGTAFFDNRIVNA 482 (768)
Q Consensus 460 Di~~~g~W~~~~~a~~Dvrv~~~ 482 (768)
||.|..- +....+.|.+...
T Consensus 103 Dv~v~~~---~~~~aiEiQ~S~i 122 (375)
T PF06054_consen 103 DVLVNNK---GQRLAIEIQCSPI 122 (375)
T ss_pred cEEEEcC---CcEEEEEEEeCCC
Confidence 9999742 4556667776553
No 97
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=41.04 E-value=18 Score=35.44 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCCccccccccchh
Q psy17256 728 DLERIAQITGLSKRVTQVWFQNSRA 752 (768)
Q Consensus 728 ~r~~LA~~lgls~~~V~vWFQNrRa 752 (768)
..++||..+|++...|.-|-.+.+.
T Consensus 84 SqeeLA~~lgvs~s~IsriE~G~~~ 108 (154)
T TIGR00270 84 SQEQLAKKIQEKESLIKKIENAEIE 108 (154)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCC
Confidence 3677888888888888888776543
No 98
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=38.64 E-value=9.8 Score=33.64 Aligned_cols=35 Identities=31% Similarity=0.661 Sum_probs=23.1
Q ss_pred hhhhhcccccccCCCCCCCCcc---eee---ecC-ceecccC
Q psy17256 610 ICFRSFGAKCSKCCRGIASSDW---VRK---ARD-HVYHLAC 644 (768)
Q Consensus 610 ~y~~~f~~~C~~C~~~I~~~e~---~~~---a~~-~~~H~~C 644 (768)
-|...|..+|.+|++-+..... +++ ... ..||..|
T Consensus 48 sY~~lfs~pC~~C~klL~~~~~LPP~~r~~~~~~~~ayH~~C 89 (90)
T PF11571_consen 48 SYRNLFSTPCKKCGKLLSSKAFLPPVRRPKDFRSWEAYHEGC 89 (90)
T ss_pred HHhhhccchhhHHHhHhhhcccCCCeeecccCCCCcccCccc
Confidence 3889999999999998832221 222 122 4688777
No 99
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=36.66 E-value=35 Score=27.17 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhhhhCCC--CCHHHHHHHHHHcCCCccccc
Q psy17256 67 FTEEQLQVLQANFQLDSN--PDGQDLERIAQITGLSKRVTQ 105 (768)
Q Consensus 67 ~t~~Ql~~Le~~F~~~~~--p~~~~r~~la~~l~l~~~~vq 105 (768)
+|+.|.+.|..+++..-| |-...-.+||..+|++...+.
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~ 41 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTVS 41 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHH
Confidence 578899999999987653 444556899999999987654
No 100
>PRK08359 transcription factor; Validated
Probab=35.19 E-value=22 Score=35.47 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCccccccccch
Q psy17256 728 DLERIAQITGLSKRVTQVWFQNSR 751 (768)
Q Consensus 728 ~r~~LA~~lgls~~~V~vWFQNrR 751 (768)
..++||..+|++...|..|=.+++
T Consensus 100 SQeeLA~~lgvs~stI~~iE~G~~ 123 (176)
T PRK08359 100 SYEELSHEVGLSVNDLRRIAHGEY 123 (176)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCc
Confidence 456778888888777777655554
No 101
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=32.28 E-value=22 Score=33.63 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=18.4
Q ss_pred cccccccccCCCCceEeecCcccccccc
Q psy17256 646 ACEACKRQLSTGEEFALHEDRVLCKSHY 673 (768)
Q Consensus 646 ~C~~C~~~L~~G~~f~~~~g~~~C~~~y 673 (768)
.|..|+.+| |- ++|.+||-.|-
T Consensus 30 hCp~Cg~PL-----F~-KdG~v~CPvC~ 51 (131)
T COG1645 30 HCPKCGTPL-----FR-KDGEVFCPVCG 51 (131)
T ss_pred hCcccCCcc-----ee-eCCeEECCCCC
Confidence 388899998 55 89999998885
No 102
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.53 E-value=35 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=5.8
Q ss_pred cccCCCCCCCC
Q psy17256 619 CSKCCRGIASS 629 (768)
Q Consensus 619 C~~C~~~I~~~ 629 (768)
|..|+..|..+
T Consensus 2 Cp~CG~~~~~~ 12 (23)
T PF13240_consen 2 CPNCGAEIEDD 12 (23)
T ss_pred CcccCCCCCCc
Confidence 55566555543
No 103
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=28.10 E-value=37 Score=26.99 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=31.8
Q ss_pred ccHHHHHHHhhccccCCC--CCHHHHHHHHHHhCCCCCcc
Q psy17256 706 FTEEQLQVLQANFQLDSN--PDGQDLERIAQITGLSKRVT 743 (768)
Q Consensus 706 ~s~~Ql~~Le~~F~~~~~--p~~~~r~~LA~~lgls~~~V 743 (768)
+|..|...|...+...-| |-...-..||..+|++...+
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTV 40 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHH
Confidence 478899999999998875 66777889999999998654
No 104
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.08 E-value=17 Score=28.75 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=10.9
Q ss_pred CCCCCcCCCCCCCCCcchh
Q psy17256 392 KGLPTYCDGCGGEMSVTHA 410 (768)
Q Consensus 392 ~~~~~~C~~c~~~~~~~H~ 410 (768)
-.....|++||.+|+.+|.
T Consensus 17 ~~~~~~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 17 KEAKGCCPLCGRPLDEEHR 35 (54)
T ss_dssp TT-SEE-TTT--EE-HHHH
T ss_pred hcCCCcCCCCCCCCCHHHH
Confidence 3344599999999999886
No 105
>PRK12496 hypothetical protein; Provisional
Probab=27.89 E-value=92 Score=30.75 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhhcccccccccccCCCCCCCCCChhHHHHHHHHHhhcCCCCCC-----------CcCCCCCCCCCcchh
Q psy17256 342 LPPAKQRVLTRIVEGQSSHWLNVIPKSSDNFDLSPVQFRDALALRYNHGLKGLP-----------TYCDGCGGEMSVTHA 410 (768)
Q Consensus 342 l~~~~~r~~~~~~~~~~s~wl~~~p~~~~~~~l~~~efr~~l~~r~~~pl~~~~-----------~~C~~c~~~~~~~H~ 410 (768)
|+.....++.+|.+. ++.-+++.--..-++-++|.++.++- ..|.+||..|+.+..
T Consensus 76 Ls~~D~~~iaLA~el-------------~~~lvtDD~~~~~vA~~lgi~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~~ 142 (164)
T PRK12496 76 LSNTDIEVLALALEL-------------NGTLYTDDYGIQNVAKKLNIKFENIKTKGIKKVIKWRKVCKGCKKKYPEDYP 142 (164)
T ss_pred cchhhHHHHHHHHHh-------------CCcEECcHHHHHHHHHHcCCeEeccccccchhheeeeEECCCCCccccCCCC
Confidence 666666777777765 23445555566667888888877776 779999999986433
Q ss_pred -hcccCCCccccchhh
Q psy17256 411 -LNCKKGGLVKHGHDY 425 (768)
Q Consensus 411 -l~C~~~~~~~~rHn~ 425 (768)
..|+.=|..+.|++.
T Consensus 143 ~~~C~~CG~~~~r~~~ 158 (164)
T PRK12496 143 DDVCEICGSPVKRKMV 158 (164)
T ss_pred CCcCCCCCChhhhcch
Confidence 568865555555543
No 106
>KOG1702|consensus
Probab=27.85 E-value=24 Score=35.64 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=14.9
Q ss_pred ccccceEEEeccccccc
Q psy17256 557 SWLRVRTEFSILKAVSL 573 (768)
Q Consensus 557 ~wh~~~~~c~~c~~~~~ 573 (768)
.||-.||.|.+|+-++.
T Consensus 26 ~whk~cfkce~c~mtln 42 (264)
T KOG1702|consen 26 VWHKQCFKCEVCGMTLN 42 (264)
T ss_pred HHHHHhheeeeccCChh
Confidence 89999999999996544
No 107
>KOG1280|consensus
Probab=27.43 E-value=61 Score=35.53 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=10.2
Q ss_pred ecccCccccccccc
Q psy17256 640 YHLACFACEACKRQ 653 (768)
Q Consensus 640 ~H~~CF~C~~C~~~ 653 (768)
|-+.||+|..|++.
T Consensus 75 y~~qSftCPyC~~~ 88 (381)
T KOG1280|consen 75 YDPQSFTCPYCGIM 88 (381)
T ss_pred cccccccCCccccc
Confidence 45568888888865
No 108
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.79 E-value=21 Score=31.63 Aligned_cols=18 Identities=22% Similarity=0.768 Sum_probs=9.9
Q ss_pred ccccccccccCCCCceEe
Q psy17256 645 FACEACKRQLSTGEEFAL 662 (768)
Q Consensus 645 F~C~~C~~~L~~G~~f~~ 662 (768)
|.|.+|+..+..|+.|..
T Consensus 7 wkC~VCg~~iieGqkFTF 24 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTF 24 (103)
T ss_pred eeEeeeCCEeeeccEEEE
Confidence 445555555555555543
No 109
>PRK06424 transcription factor; Provisional
Probab=25.79 E-value=44 Score=32.29 Aligned_cols=25 Identities=12% Similarity=-0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCCccccccccchh
Q psy17256 728 DLERIAQITGLSKRVTQVWFQNSRA 752 (768)
Q Consensus 728 ~r~~LA~~lgls~~~V~vWFQNrRa 752 (768)
...+||..+|++...|.-|-.+++.
T Consensus 99 SQ~eLA~~iGvs~stIskiE~G~~~ 123 (144)
T PRK06424 99 SQADLAAKIFERKNVIASIERGDLL 123 (144)
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCC
Confidence 3678999999999999999888764
No 110
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=25.27 E-value=23 Score=30.37 Aligned_cols=15 Identities=40% Similarity=0.784 Sum_probs=11.6
Q ss_pred cccccCCCCCCCCcc
Q psy17256 617 AKCSKCCRGIASSDW 631 (768)
Q Consensus 617 ~~C~~C~~~I~~~e~ 631 (768)
.+|.+|+..|..++.
T Consensus 8 a~Ck~C~~~I~kg~l 22 (82)
T PF00645_consen 8 AKCKGCKKKIAKGEL 22 (82)
T ss_dssp EBETTTSCBE-TTSE
T ss_pred ccCcccCCcCCCCCE
Confidence 589999999988753
No 111
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.86 E-value=48 Score=24.95 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=9.6
Q ss_pred ccccccccCCCCceEeecCccccccc
Q psy17256 647 CEACKRQLSTGEEFALHEDRVLCKSH 672 (768)
Q Consensus 647 C~~C~~~L~~G~~f~~~~g~~~C~~~ 672 (768)
|..|+.+| |-.++++.||..|
T Consensus 20 Cp~C~~PL-----~~~k~g~~~Cv~C 40 (41)
T PF06677_consen 20 CPDCGTPL-----MRDKDGKIYCVSC 40 (41)
T ss_pred cCCCCCee-----EEecCCCEECCCC
Confidence 44445555 2234455555443
No 112
>KOG2114|consensus
Probab=21.01 E-value=39 Score=41.10 Aligned_cols=36 Identities=31% Similarity=0.683 Sum_probs=27.8
Q ss_pred cccccCCCCCCCCcceeeec-CceecccCcc-----cccccccc
Q psy17256 617 AKCSKCCRGIASSDWVRKAR-DHVYHLACFA-----CEACKRQL 654 (768)
Q Consensus 617 ~~C~~C~~~I~~~e~~~~a~-~~~~H~~CF~-----C~~C~~~L 654 (768)
.+|..|+.++.-. ++..+ +..||..||. |..|...+
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLEDKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhccCcccCCccchhh
Confidence 3899999999765 66665 8889999986 66666544
No 113
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=20.39 E-value=78 Score=24.18 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccc
Q psy17256 66 TFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWF 108 (768)
Q Consensus 66 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWF 108 (768)
.+++.+...+...|..+ ..-.++|..+|++..+|+.+.
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~ 41 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRIL 41 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHH
Confidence 36788888898888333 357899999999999988764
No 114
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=20.15 E-value=46 Score=22.06 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=13.3
Q ss_pred cCCCCCCCCCc----chhhccc
Q psy17256 397 YCDGCGGEMSV----THALNCK 414 (768)
Q Consensus 397 ~C~~c~~~~~~----~H~l~C~ 414 (768)
.|+.||..|.. .|.-.|+
T Consensus 4 ~C~~CgR~F~~~~l~~H~~~C~ 25 (25)
T PF13913_consen 4 PCPICGRKFNPDRLEKHEKICK 25 (25)
T ss_pred cCCCCCCEECHHHHHHHHHhcC
Confidence 68899999975 5655553
No 115
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=20.04 E-value=38 Score=27.68 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCccccccc
Q psy17256 89 DLERIAQITGLSKRVTQVW 107 (768)
Q Consensus 89 ~r~~la~~l~l~~~~vqvW 107 (768)
.-.+||.+||+++.+|+.|
T Consensus 24 ~lkdIA~~Lgvs~~tIr~W 42 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIRKW 42 (60)
T ss_pred cHHHHHHHHCCCHHHHHHH
Confidence 4678999999999999988
No 116
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.03 E-value=59 Score=31.67 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=30.4
Q ss_pred cchhhhhhhcccccccCCCCCCCCcce--eeecCceecccCcccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWV--RKARDHVYHLACFACEACKRQL 654 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~--~~a~~~~~H~~CF~C~~C~~~L 654 (768)
||.+|-.+. -..|..|+-+|.+...+ +...+..|++--| |..|++++
T Consensus 30 fC~kCG~~t-I~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsY-C~~CGkpy 78 (158)
T PF10083_consen 30 FCSKCGAKT-ITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSY-CHNCGKPY 78 (158)
T ss_pred HHHHhhHHH-HHHCcCCCCCCCCceecCCeeeeCCCCCCChh-HHhCCCCC
Confidence 666776553 35899999999975333 2233455664433 77888887
Done!