Query psy17256
Match_columns 768
No_of_seqs 592 out of 3759
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:20:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rgt_A Fusion of LIM/homeobox 99.9 1.2E-24 4.2E-29 214.0 -1.6 157 530-727 6-164 (169)
2 2xjy_A Rhombotin-2; oncoprotei 99.8 1.3E-20 4.3E-25 177.3 1.6 123 531-678 3-128 (131)
3 2xqn_T Testin, TESS; metal-bin 99.8 2.8E-20 9.6E-25 173.8 2.6 120 530-677 3-125 (126)
4 1rut_X Flinc4, fusion protein 99.8 2.2E-20 7.6E-25 186.7 1.7 123 531-678 6-131 (188)
5 2jtn_A LIM domain-binding prot 99.8 8.5E-20 2.9E-24 181.5 1.7 120 530-677 60-181 (182)
6 1b8t_A Protein (CRP1); LIM dom 99.7 6.1E-18 2.1E-22 169.6 0.9 121 530-679 7-176 (192)
7 2kt0_A Nanog, homeobox protein 99.7 5.8E-17 2E-21 140.4 6.7 67 55-121 17-83 (84)
8 2dmt_A Homeobox protein BARH-l 99.7 6.1E-17 2.1E-21 138.9 6.4 66 55-120 12-77 (80)
9 2da3_A Alpha-fetoprotein enhan 99.6 1.1E-16 3.7E-21 137.4 5.4 66 55-120 12-77 (80)
10 1wh5_A ZF-HD homeobox family p 99.6 8.4E-17 2.9E-21 137.8 4.4 62 56-117 13-78 (80)
11 2cra_A Homeobox protein HOX-B1 99.6 1.2E-16 4.1E-21 133.5 4.6 64 57-120 4-67 (70)
12 2dms_A Homeobox protein OTX2; 99.6 2.5E-16 8.7E-21 135.1 6.4 67 57-123 4-70 (80)
13 1wh7_A ZF-HD homeobox family p 99.6 1.5E-16 5.1E-21 136.0 4.4 61 56-117 13-78 (80)
14 2da2_A Alpha-fetoprotein enhan 99.6 2.1E-16 7.1E-21 132.0 5.0 64 57-120 4-67 (70)
15 2da1_A Alpha-fetoprotein enhan 99.6 1.8E-16 6.2E-21 132.4 4.7 64 57-120 4-67 (70)
16 2dmu_A Homeobox protein goosec 99.6 2.3E-16 7.7E-21 131.8 5.2 63 58-120 5-67 (70)
17 1nk2_P Homeobox protein VND; h 99.6 3E-16 1E-20 133.5 5.8 67 56-122 5-71 (77)
18 2h1k_A IPF-1, pancreatic and d 99.6 1.8E-16 6E-21 129.7 4.0 61 59-119 2-62 (63)
19 2vi6_A Homeobox protein nanog; 99.6 1.3E-16 4.6E-21 129.9 3.3 60 59-118 2-61 (62)
20 2djn_A Homeobox protein DLX-5; 99.6 2.1E-16 7.3E-21 132.0 4.3 64 57-120 4-67 (70)
21 2dmq_A LIM/homeobox protein LH 99.6 4.8E-16 1.6E-20 133.3 6.3 66 58-123 5-70 (80)
22 2cue_A Paired box protein PAX6 99.6 3.2E-16 1.1E-20 134.4 5.0 66 58-123 5-70 (80)
23 2cup_A Skeletal muscle LIM-pro 99.6 8.6E-17 2.9E-21 144.1 1.4 95 530-651 5-101 (101)
24 2ecc_A Homeobox and leucine zi 99.6 5.2E-16 1.8E-20 130.2 5.9 64 63-126 6-69 (76)
25 1puf_A HOX-1.7, homeobox prote 99.6 4.1E-16 1.4E-20 132.7 5.4 65 56-120 9-73 (77)
26 1zq3_P PRD-4, homeotic bicoid 99.6 3.7E-16 1.3E-20 129.7 4.8 65 60-124 2-66 (68)
27 2dmt_A Homeobox protein BARH-l 99.6 2.3E-16 7.9E-21 135.3 3.7 66 695-760 13-78 (80)
28 2hdd_A Protein (engrailed home 99.6 2.6E-16 8.8E-21 127.8 3.8 58 60-117 3-60 (61)
29 1ahd_P Antennapedia protein mu 99.6 3.3E-16 1.1E-20 130.0 4.4 64 60-123 2-65 (68)
30 2m0c_A Homeobox protein arista 99.6 5.6E-16 1.9E-20 131.2 5.9 68 56-123 5-72 (75)
31 2l7z_A Homeobox protein HOX-A1 99.6 5.8E-16 2E-20 130.4 5.9 66 57-122 4-69 (73)
32 2kt0_A Nanog, homeobox protein 99.6 2.5E-16 8.6E-21 136.4 3.7 67 694-760 17-83 (84)
33 1fjl_A Paired protein; DNA-bin 99.6 3.2E-16 1.1E-20 134.7 4.2 65 56-120 14-78 (81)
34 2r5y_A Homeotic protein sex co 99.6 4.2E-16 1.5E-20 136.1 5.0 64 56-119 24-87 (88)
35 3a01_A Homeodomain-containing 99.6 7.3E-16 2.5E-20 136.0 6.4 69 55-123 12-80 (93)
36 1yz8_P Pituitary homeobox 2; D 99.6 2.6E-16 8.9E-21 130.7 3.0 64 59-122 2-65 (68)
37 2e1o_A Homeobox protein PRH; D 99.6 6.1E-16 2.1E-20 129.2 5.2 63 58-120 5-67 (70)
38 1ig7_A Homeotic protein MSX-1; 99.6 4.8E-16 1.6E-20 124.9 4.3 57 61-117 1-57 (58)
39 1ftt_A TTF-1 HD, thyroid trans 99.6 6.9E-16 2.4E-20 128.1 5.3 64 60-123 2-65 (68)
40 2m0c_A Homeobox protein arista 99.6 3.2E-16 1.1E-20 132.7 3.3 70 696-765 6-75 (75)
41 1bw5_A ISL-1HD, insulin gene e 99.6 4.5E-16 1.5E-20 128.5 3.7 61 59-119 2-62 (66)
42 1jgg_A Segmentation protein EV 99.6 7E-16 2.4E-20 124.8 4.0 58 61-118 2-59 (60)
43 2da3_A Alpha-fetoprotein enhan 99.6 4.9E-16 1.7E-20 133.2 3.2 65 696-760 14-78 (80)
44 2da4_A Hypothetical protein DK 99.6 6.7E-16 2.3E-20 132.4 3.9 63 57-119 5-71 (80)
45 1b8i_A Ultrabithorax, protein 99.6 7.3E-16 2.5E-20 132.5 4.0 63 58-120 18-80 (81)
46 1ftt_A TTF-1 HD, thyroid trans 99.6 7.7E-16 2.6E-20 127.8 3.3 67 699-765 2-68 (68)
47 1nk2_P Homeobox protein VND; h 99.6 1.2E-15 4E-20 129.9 4.3 69 696-764 6-74 (77)
48 2k40_A Homeobox expressed in E 99.6 1.4E-15 4.7E-20 125.9 4.5 62 60-121 1-62 (67)
49 2cra_A Homeobox protein HOX-B1 99.6 6.2E-16 2.1E-20 129.1 2.4 64 697-760 5-68 (70)
50 3nar_A ZHX1, zinc fingers and 99.6 9.8E-16 3.4E-20 136.0 3.4 67 56-122 21-87 (96)
51 2dmu_A Homeobox protein goosec 99.6 1.1E-15 3.7E-20 127.7 3.5 64 697-760 5-68 (70)
52 1wh5_A ZF-HD homeobox family p 99.6 7.1E-16 2.4E-20 132.0 2.4 61 696-756 14-78 (80)
53 2da1_A Alpha-fetoprotein enhan 99.6 7.9E-16 2.7E-20 128.5 2.4 64 697-760 5-68 (70)
54 1akh_A Protein (mating-type pr 99.6 9.8E-16 3.3E-20 124.4 2.9 60 57-116 2-61 (61)
55 3a02_A Homeobox protein arista 99.6 1.2E-15 4E-20 123.5 3.3 58 63-120 2-59 (60)
56 1b72_A Protein (homeobox prote 99.6 1.4E-15 4.8E-20 135.3 4.0 65 57-121 31-95 (97)
57 2cue_A Paired box protein PAX6 99.6 9.8E-16 3.4E-20 131.4 2.8 66 697-762 5-70 (80)
58 2dms_A Homeobox protein OTX2; 99.5 1.5E-15 5.1E-20 130.3 3.9 68 696-763 4-71 (80)
59 3rkq_A Homeobox protein NKX-2. 99.5 1.8E-15 6.2E-20 121.4 4.0 57 60-116 2-58 (58)
60 2vi6_A Homeobox protein nanog; 99.5 6.3E-16 2.2E-20 125.9 1.4 61 698-758 2-62 (62)
61 2da2_A Alpha-fetoprotein enhan 99.5 1E-15 3.5E-20 127.8 2.5 65 696-760 4-68 (70)
62 2cuf_A FLJ21616 protein; homeo 99.5 3.2E-15 1.1E-19 132.4 5.9 66 57-122 4-84 (95)
63 2h1k_A IPF-1, pancreatic and d 99.5 1E-15 3.5E-20 125.1 2.3 61 698-758 2-62 (63)
64 1wi3_A DNA-binding protein SAT 99.5 2.2E-15 7.5E-20 121.3 4.1 60 57-116 4-64 (71)
65 1uhs_A HOP, homeodomain only p 99.5 3.3E-15 1.1E-19 125.5 5.2 60 61-120 2-62 (72)
66 2hi3_A Homeodomain-only protei 99.5 3.6E-15 1.2E-19 125.5 5.5 61 61-121 3-64 (73)
67 2ecb_A Zinc fingers and homeob 99.5 6.9E-15 2.3E-19 127.8 7.2 59 66-124 17-75 (89)
68 2dn0_A Zinc fingers and homeob 99.5 3.1E-15 1.1E-19 127.0 4.9 61 61-121 9-69 (76)
69 1wh7_A ZF-HD homeobox family p 99.5 1.3E-15 4.3E-20 130.3 2.5 61 695-756 13-78 (80)
70 3a01_A Homeodomain-containing 99.5 2.3E-15 7.7E-20 132.8 4.2 68 695-762 13-80 (93)
71 1yz8_P Pituitary homeobox 2; D 99.5 9.1E-16 3.1E-20 127.4 1.4 65 698-762 2-66 (68)
72 1zq3_P PRD-4, homeotic bicoid 99.5 2.3E-15 7.8E-20 124.9 3.8 65 699-763 2-66 (68)
73 2da5_A Zinc fingers and homeob 99.5 3.9E-15 1.3E-19 126.0 5.3 60 62-121 9-68 (75)
74 1puf_A HOX-1.7, homeobox prote 99.5 2.2E-15 7.5E-20 128.2 3.6 65 696-760 10-74 (77)
75 3a03_A T-cell leukemia homeobo 99.5 2.4E-15 8.1E-20 119.9 3.5 54 65-118 2-55 (56)
76 2ly9_A Zinc fingers and homeob 99.5 4.3E-15 1.5E-19 125.4 5.3 64 59-122 5-68 (74)
77 2djn_A Homeobox protein DLX-5; 99.5 1.4E-15 4.7E-20 127.0 2.2 63 697-759 5-67 (70)
78 2ehe_A Four and A half LIM dom 99.5 4.4E-15 1.5E-19 127.8 5.3 72 606-678 5-76 (82)
79 1ahd_P Antennapedia protein mu 99.5 1.5E-15 5.1E-20 126.0 2.2 64 699-762 2-65 (68)
80 2hdd_A Protein (engrailed home 99.5 1.6E-15 5.5E-20 123.1 2.1 58 699-756 3-60 (61)
81 2dmq_A LIM/homeobox protein LH 99.5 3.3E-15 1.1E-19 128.1 4.1 66 697-762 5-70 (80)
82 1fjl_A Paired protein; DNA-bin 99.5 2.3E-15 7.8E-20 129.4 2.9 64 696-759 15-78 (81)
83 2e1o_A Homeobox protein PRH; D 99.5 2.9E-15 9.9E-20 125.1 3.4 64 697-760 5-68 (70)
84 1e3o_C Octamer-binding transcr 99.5 3.6E-15 1.2E-19 144.7 3.9 62 57-118 98-159 (160)
85 2l7z_A Homeobox protein HOX-A1 99.5 3.9E-15 1.3E-19 125.3 3.5 64 697-760 5-68 (73)
86 1x63_A Skeletal muscle LIM-pro 99.5 4.5E-15 1.5E-19 127.7 3.9 73 606-679 5-77 (82)
87 2da4_A Hypothetical protein DK 99.5 2.5E-15 8.6E-20 128.8 2.3 65 696-760 5-73 (80)
88 1x2n_A Homeobox protein pknox1 99.5 9.5E-15 3.3E-19 123.0 5.7 64 57-120 4-70 (73)
89 1ig7_A Homeotic protein MSX-1; 99.5 3.2E-15 1.1E-19 120.1 2.5 57 700-756 1-57 (58)
90 2egq_A FHL1 protein; LIM domai 99.5 4.1E-15 1.4E-19 126.3 3.2 69 606-675 5-76 (77)
91 1bw5_A ISL-1HD, insulin gene e 99.5 2.1E-15 7.2E-20 124.4 1.3 61 698-758 2-62 (66)
92 2xsd_C POU domain, class 3, tr 99.5 4.5E-15 1.5E-19 144.4 3.7 66 56-121 95-160 (164)
93 2da6_A Hepatocyte nuclear fact 99.5 8.6E-15 2.9E-19 129.4 5.0 68 57-124 3-91 (102)
94 2k40_A Homeobox expressed in E 99.5 4.2E-15 1.4E-19 123.0 2.8 63 700-762 2-64 (67)
95 1b72_A Protein (homeobox prote 99.5 4.3E-15 1.5E-19 132.2 2.9 66 697-762 32-97 (97)
96 1au7_A Protein PIT-1, GHF-1; c 99.5 7.4E-15 2.5E-19 140.3 4.7 85 26-118 61-145 (146)
97 2dn0_A Zinc fingers and homeob 99.5 3.9E-15 1.3E-19 126.3 2.4 67 699-765 8-74 (76)
98 2r5y_A Homeotic protein sex co 99.5 3.9E-15 1.3E-19 130.0 2.4 64 696-759 25-88 (88)
99 1v6g_A Actin binding LIM prote 99.5 1.1E-14 3.6E-19 125.1 4.9 73 606-680 5-77 (81)
100 1jgg_A Segmentation protein EV 99.5 4.2E-15 1.4E-19 120.2 2.3 58 700-757 2-59 (60)
101 1b8i_A Ultrabithorax, protein 99.5 4E-15 1.4E-19 127.8 2.0 63 697-759 18-80 (81)
102 2dmp_A Zinc fingers and homeob 99.5 3.2E-14 1.1E-18 124.3 7.7 60 65-124 18-77 (89)
103 3a02_A Homeobox protein arista 99.5 3.7E-15 1.3E-19 120.6 1.5 58 702-759 2-59 (60)
104 1uhs_A HOP, homeodomain only p 99.5 8.1E-15 2.8E-19 123.0 3.6 65 700-764 2-67 (72)
105 1puf_B PRE-B-cell leukemia tra 99.5 1.4E-14 4.9E-19 121.9 4.8 63 60-122 1-66 (73)
106 2cuq_A Four and A half LIM dom 99.5 1.1E-14 3.6E-19 124.7 3.9 71 606-679 5-75 (80)
107 2hi3_A Homeodomain-only protei 99.5 1.1E-14 3.7E-19 122.6 3.9 64 700-763 3-67 (73)
108 1x6a_A LIMK-2, LIM domain kina 99.5 8.2E-15 2.8E-19 125.8 3.0 71 606-678 5-76 (81)
109 3a03_A T-cell leukemia homeobo 99.5 7.2E-15 2.5E-19 117.1 1.9 54 704-757 2-55 (56)
110 1du6_A PBX1, homeobox protein 99.5 8.6E-15 3E-19 119.9 2.4 59 59-117 2-63 (64)
111 2cqx_A LAG1 longevity assuranc 99.5 1E-14 3.6E-19 122.2 2.4 59 61-119 9-68 (72)
112 2da5_A Zinc fingers and homeob 99.5 1.7E-14 5.7E-19 122.1 3.6 61 701-761 9-69 (75)
113 2ecc_A Homeobox and leucine zi 99.5 1E-14 3.5E-19 122.4 2.3 58 702-759 6-63 (76)
114 3rkq_A Homeobox protein NKX-2. 99.5 1.1E-14 3.8E-19 116.7 2.4 57 699-755 2-58 (58)
115 1b72_B Protein (PBX1); homeodo 99.5 8.6E-15 2.9E-19 127.6 1.9 62 61-122 2-66 (87)
116 1akh_A Protein (mating-type pr 99.5 7.1E-15 2.4E-19 119.3 1.1 59 697-755 3-61 (61)
117 2dmn_A Homeobox protein TGIF2L 99.5 5.1E-14 1.7E-18 121.4 6.4 65 58-122 5-72 (83)
118 1lfb_A Liver transcription fac 99.5 1.4E-14 4.7E-19 128.7 2.8 67 56-122 5-92 (99)
119 3nar_A ZHX1, zinc fingers and 99.5 1.2E-14 4E-19 129.0 2.0 63 696-758 22-84 (96)
120 2ecb_A Zinc fingers and homeob 99.5 2.3E-14 7.7E-19 124.5 3.7 61 705-765 17-77 (89)
121 2ly9_A Zinc fingers and homeob 99.5 1.5E-14 5.3E-19 122.0 2.5 65 699-763 6-70 (74)
122 1k61_A Mating-type protein alp 99.4 3E-14 1E-18 115.1 3.9 55 64-118 2-59 (60)
123 2cuf_A FLJ21616 protein; homeo 99.4 2.4E-14 8.3E-19 126.8 3.5 69 696-764 4-87 (95)
124 1wi3_A DNA-binding protein SAT 99.4 1.6E-14 5.6E-19 116.3 2.2 59 696-754 4-63 (71)
125 2l9r_A Homeobox protein NKX-3. 99.4 2.9E-14 1E-18 118.1 3.8 57 65-121 9-65 (69)
126 1x2n_A Homeobox protein pknox1 99.4 3E-14 1E-18 119.9 3.7 64 697-760 5-71 (73)
127 3nau_A Zinc fingers and homeob 99.4 2.6E-14 8.8E-19 115.7 3.0 52 67-118 11-62 (66)
128 1x3h_A Leupaxin; paxillin fami 99.4 3E-14 1E-18 121.8 3.1 70 606-678 5-74 (80)
129 3l1p_A POU domain, class 5, tr 99.4 2.3E-14 8E-19 138.3 2.2 61 58-118 94-154 (155)
130 1puf_B PRE-B-cell leukemia tra 99.4 4.5E-14 1.5E-18 118.8 3.2 63 700-762 2-67 (73)
131 1mnm_C Protein (MAT alpha-2 tr 99.4 6.3E-14 2.2E-18 122.0 4.2 60 58-117 25-87 (87)
132 2dmp_A Zinc fingers and homeob 99.4 8.1E-14 2.8E-18 121.7 4.6 59 704-762 18-76 (89)
133 3d1n_I POU domain, class 6, tr 99.4 7.5E-14 2.6E-18 134.3 4.8 61 57-117 90-150 (151)
134 1le8_B Mating-type protein alp 99.4 8.7E-14 3E-18 120.0 4.1 59 61-119 3-64 (83)
135 1du6_A PBX1, homeobox protein 99.4 3E-14 1E-18 116.7 1.2 59 699-757 3-64 (64)
136 2cqx_A LAG1 longevity assuranc 99.4 2.6E-14 9E-19 119.7 0.6 61 700-760 9-70 (72)
137 2xsd_C POU domain, class 3, tr 99.4 3.6E-14 1.2E-18 138.1 1.4 67 695-761 95-161 (164)
138 2da6_A Hepatocyte nuclear fact 99.4 8.4E-14 2.9E-18 123.1 3.3 67 696-762 3-90 (102)
139 2l3k_A Rhombotin-2, linker, LI 99.4 9.8E-14 3.4E-18 128.9 3.7 68 611-678 1-70 (123)
140 1e3o_C Octamer-binding transcr 99.4 5.4E-14 1.8E-18 136.5 1.6 62 696-757 98-159 (160)
141 2e19_A Transcription factor 8; 99.4 1E-13 3.5E-18 113.3 3.0 53 65-117 8-60 (64)
142 2l9r_A Homeobox protein NKX-3. 99.4 5.1E-14 1.7E-18 116.6 1.1 59 704-762 9-67 (69)
143 1lfb_A Liver transcription fac 99.4 4.8E-14 1.6E-18 125.2 0.9 71 696-766 6-97 (99)
144 1b72_B Protein (PBX1); homeodo 99.4 1E-13 3.4E-18 120.8 2.8 62 700-761 2-66 (87)
145 2dmn_A Homeobox protein TGIF2L 99.4 1.7E-13 5.9E-18 118.1 4.3 68 697-764 5-75 (83)
146 1k61_A Mating-type protein alp 99.4 7.8E-14 2.7E-18 112.7 1.9 55 703-757 2-59 (60)
147 1au7_A Protein PIT-1, GHF-1; c 99.4 6.7E-14 2.3E-18 133.7 1.4 62 696-757 84-145 (146)
148 1x2m_A LAG1 longevity assuranc 99.4 1E-13 3.5E-18 112.5 2.2 50 69-118 9-59 (64)
149 3nau_A Zinc fingers and homeob 99.4 9.5E-14 3.2E-18 112.4 1.7 51 707-757 12-62 (66)
150 2dlo_A Thyroid receptor-intera 99.4 1.5E-13 5.3E-18 117.8 3.0 69 606-678 6-75 (81)
151 1m3v_A FLIN4, fusion of the LI 99.4 8.4E-14 2.9E-18 129.1 0.5 108 530-678 5-115 (122)
152 2d5v_A Hepatocyte nuclear fact 99.3 2.3E-13 7.9E-18 132.7 2.9 66 56-121 93-158 (164)
153 1mnm_C Protein (MAT alpha-2 tr 99.3 2.3E-13 7.9E-18 118.4 1.9 60 697-756 25-87 (87)
154 1le8_B Mating-type protein alp 99.3 2.4E-13 8.1E-18 117.3 1.9 61 700-760 3-66 (83)
155 3d1n_I POU domain, class 6, tr 99.3 3.6E-13 1.2E-17 129.5 2.7 61 696-756 90-150 (151)
156 1wig_A KIAA1808 protein; LIM d 99.3 9.3E-13 3.2E-17 110.7 4.6 64 613-678 2-65 (73)
157 1x2m_A LAG1 longevity assuranc 99.3 1.9E-13 6.4E-18 110.9 0.1 50 709-758 10-60 (64)
158 1x68_A FHL5 protein; four-and- 99.3 2E-12 6.7E-17 109.5 6.2 66 613-679 2-69 (76)
159 2e19_A Transcription factor 8; 99.3 3.6E-13 1.2E-17 110.1 1.3 54 704-757 8-61 (64)
160 3l1p_A POU domain, class 5, tr 99.3 6.4E-13 2.2E-17 128.2 3.2 61 697-757 94-154 (155)
161 3f6q_B LIM and senescent cell 99.3 4.8E-13 1.7E-17 111.6 1.9 66 611-677 6-71 (72)
162 1x61_A Thyroid receptor intera 99.3 1E-12 3.5E-17 109.9 3.6 65 614-679 3-67 (72)
163 1x4k_A Skeletal muscle LIM-pro 99.3 1.4E-12 4.7E-17 109.1 4.2 65 613-678 2-66 (72)
164 1wyh_A SLIM 2, skeletal muscle 99.3 2E-12 6.8E-17 108.1 3.8 65 613-678 2-66 (72)
165 1ic8_A Hepatocyte nuclear fact 99.3 1.3E-12 4.6E-17 129.7 2.7 62 56-117 111-193 (194)
166 1x4l_A Skeletal muscle LIM-pro 99.2 3.3E-12 1.1E-16 106.9 3.8 64 614-678 3-68 (72)
167 2d5v_A Hepatocyte nuclear fact 99.2 1.1E-12 3.9E-17 127.8 0.9 67 696-762 94-160 (164)
168 3k2a_A Homeobox protein MEIS2; 99.2 3.5E-12 1.2E-16 105.3 3.4 56 66-121 4-62 (67)
169 1nyp_A Pinch protein; LIM doma 99.2 2.7E-12 9.1E-17 105.5 2.0 63 613-678 2-64 (66)
170 2iyb_E Testin, TESS, TES; LIM 99.2 4.2E-12 1.4E-16 104.1 2.7 61 615-676 1-64 (65)
171 1j2o_A FLIN2, fusion of rhombo 99.2 2.4E-12 8.1E-17 117.9 1.1 104 530-678 3-107 (114)
172 2d8z_A Four and A half LIM dom 99.2 7.9E-12 2.7E-16 103.9 3.6 62 614-678 3-64 (70)
173 2dar_A PDZ and LIM domain prot 99.2 7.9E-12 2.7E-16 109.4 3.8 68 608-678 17-84 (90)
174 1g47_A Pinch protein; LIM doma 99.2 5.2E-12 1.8E-16 107.0 2.3 65 613-678 8-72 (77)
175 3k2a_A Homeobox protein MEIS2; 99.2 4.9E-12 1.7E-16 104.4 1.7 57 704-760 3-62 (67)
176 2cur_A Skeletal muscle LIM-pro 99.2 8.6E-12 2.9E-16 103.4 3.1 62 614-678 3-64 (69)
177 2d8x_A Protein pinch; LIM doma 99.2 1.3E-11 4.5E-16 102.6 3.5 62 615-679 4-65 (70)
178 2cu8_A Cysteine-rich protein 2 99.1 2.9E-11 9.9E-16 102.2 3.8 66 611-678 4-70 (76)
179 2h8r_A Hepatocyte nuclear fact 99.1 2E-11 6.8E-16 122.3 2.6 62 54-115 136-218 (221)
180 2cup_A Skeletal muscle LIM-pro 99.1 2E-11 6.9E-16 108.9 2.3 64 614-678 3-66 (101)
181 2cor_A Pinch protein; LIM doma 99.1 3.6E-11 1.2E-15 102.6 3.5 62 613-678 12-73 (79)
182 2co8_A NEDD9 interacting prote 99.1 7.4E-11 2.5E-15 101.3 4.5 62 616-679 15-78 (82)
183 2da7_A Zinc finger homeobox pr 99.1 4.2E-11 1.5E-15 97.3 2.8 47 69-115 14-60 (71)
184 2l4z_A DNA endonuclease RBBP8, 99.1 4.4E-11 1.5E-15 110.9 2.8 64 613-677 58-122 (123)
185 1x62_A C-terminal LIM domain p 99.0 2.8E-11 9.5E-16 103.2 0.7 60 616-678 15-74 (79)
186 1x64_A Alpha-actinin-2 associa 99.0 7.2E-11 2.5E-15 103.0 3.0 61 615-678 24-84 (89)
187 2dj7_A Actin-binding LIM prote 99.0 1.4E-10 4.7E-15 99.2 4.2 61 616-679 15-75 (80)
188 2xqn_T Testin, TESS; metal-bin 99.0 5.8E-11 2E-15 110.4 1.8 95 614-728 1-99 (126)
189 1a7i_A QCRP2 (LIM1); LIM domai 99.0 9.6E-11 3.3E-15 100.3 2.7 63 614-678 5-67 (81)
190 2da7_A Zinc finger homeobox pr 99.0 7E-11 2.4E-15 96.1 1.5 46 708-753 14-59 (71)
191 1ic8_A Hepatocyte nuclear fact 99.0 2.9E-11 1E-15 120.0 -1.1 61 696-756 112-193 (194)
192 2d8y_A Eplin protein; LIM doma 99.0 1.1E-10 3.9E-15 102.2 2.4 67 611-679 10-76 (91)
193 1iml_A CRIP, cysteine rich int 99.0 2.3E-10 8E-15 96.6 3.3 60 617-678 1-61 (76)
194 2lk2_A Homeobox protein TGIF1; 98.9 4E-10 1.4E-14 97.1 3.0 56 65-120 10-68 (89)
195 1j2o_A FLIN2, fusion of rhombo 98.9 4.3E-10 1.5E-14 102.7 2.8 63 616-679 3-66 (114)
196 2lk2_A Homeobox protein TGIF1; 98.9 3.6E-10 1.2E-14 97.4 1.4 57 704-760 10-69 (89)
197 1m3v_A FLIN4, fusion of the LI 98.9 2.6E-10 9E-15 105.5 0.7 64 614-678 3-67 (122)
198 2h8r_A Hepatocyte nuclear fact 98.8 4.5E-10 1.5E-14 112.6 1.1 60 695-754 138-218 (221)
199 1mh3_A Maltose binding-A1 home 98.8 9.6E-10 3.3E-14 122.1 0.2 57 60-116 365-421 (421)
200 2xjy_A Rhombotin-2; oncoprotei 98.7 3.9E-09 1.3E-13 98.6 3.4 61 617-678 3-64 (131)
201 1rut_X Flinc4, fusion protein 98.7 3.5E-09 1.2E-13 105.4 1.8 64 614-678 3-67 (188)
202 2jtn_A LIM domain-binding prot 98.7 5.1E-09 1.8E-13 103.6 2.3 63 613-678 57-119 (182)
203 1iml_A CRIP, cysteine rich int 98.6 4E-09 1.4E-13 89.0 0.2 70 531-627 1-72 (76)
204 1mh3_A Maltose binding-A1 home 98.6 3.5E-09 1.2E-13 117.6 -0.5 58 698-755 364-421 (421)
205 1a7i_A QCRP2 (LIM1); LIM domai 98.6 5.8E-09 2E-13 89.1 -0.4 70 530-626 7-77 (81)
206 1b8t_A Protein (CRP1); LIM dom 98.5 1.9E-08 6.5E-13 100.4 2.4 61 616-678 7-67 (192)
207 2rgt_A Fusion of LIM/homeobox 98.5 2.8E-08 9.4E-13 97.1 2.8 60 616-678 6-65 (169)
208 1x68_A FHL5 protein; four-and- 98.5 1E-08 3.5E-13 86.4 -0.7 69 529-624 4-76 (76)
209 2nzz_A Penetratin conjugated G 98.5 2.6E-08 8.8E-13 71.1 1.2 22 741-762 1-22 (37)
210 1x3h_A Leupaxin; paxillin fami 98.5 1.5E-08 5.2E-13 86.2 -0.4 77 505-621 3-79 (80)
211 2dar_A PDZ and LIM domain prot 98.4 2E-08 6.7E-13 87.6 -0.7 68 527-621 22-89 (90)
212 2cur_A Skeletal muscle LIM-pro 98.4 2E-08 6.9E-13 82.9 -1.3 65 530-621 5-69 (69)
213 2cu8_A Cysteine-rich protein 2 98.4 3.4E-08 1.2E-12 83.1 -0.0 68 527-621 6-75 (76)
214 1g47_A Pinch protein; LIM doma 98.4 3E-08 1E-12 83.6 -0.5 68 526-620 7-76 (77)
215 2ehe_A Four and A half LIM dom 98.4 2.9E-08 9.8E-13 84.9 -0.8 77 505-621 3-81 (82)
216 2d8z_A Four and A half LIM dom 98.4 2.6E-08 9E-13 82.4 -1.3 65 530-621 5-69 (70)
217 2dj7_A Actin-binding LIM prote 98.4 3.2E-08 1.1E-12 84.4 -1.0 63 531-621 16-79 (80)
218 2dlo_A Thyroid receptor-intera 98.4 4E-08 1.4E-12 83.8 -0.6 65 530-621 15-80 (81)
219 2nzz_A Penetratin conjugated G 98.4 1.3E-07 4.3E-12 67.6 2.0 22 102-123 1-22 (37)
220 2cuq_A Four and A half LIM dom 98.4 4.2E-08 1.4E-12 83.4 -0.6 77 505-621 3-79 (80)
221 1wyh_A SLIM 2, skeletal muscle 98.3 4.4E-08 1.5E-12 81.4 -0.7 66 529-621 4-71 (72)
222 1x64_A Alpha-actinin-2 associa 98.3 7.7E-08 2.6E-12 83.6 0.1 65 530-621 25-89 (89)
223 1x4k_A Skeletal muscle LIM-pro 98.3 5.3E-08 1.8E-12 80.9 -1.6 66 529-621 4-71 (72)
224 2cor_A Pinch protein; LIM doma 98.2 1.2E-07 4.2E-12 80.5 -0.5 66 527-620 12-77 (79)
225 1x63_A Skeletal muscle LIM-pro 98.2 1.1E-07 3.6E-12 81.3 -0.9 65 529-620 14-80 (82)
226 1nyp_A Pinch protein; LIM doma 98.2 1.1E-07 3.8E-12 77.7 -0.8 63 529-618 4-66 (66)
227 1x6a_A LIMK-2, LIM domain kina 98.2 1.6E-07 5.6E-12 79.9 -0.3 67 529-621 14-81 (81)
228 1x62_A C-terminal LIM domain p 98.2 9E-08 3.1E-12 81.3 -2.1 65 530-621 15-79 (79)
229 1x4l_A Skeletal muscle LIM-pro 98.1 2.1E-07 7.2E-12 77.3 -1.2 63 530-619 5-71 (72)
230 2d8x_A Protein pinch; LIM doma 98.1 3.3E-07 1.1E-11 75.7 -1.1 64 530-620 5-68 (70)
231 2d8y_A Eplin protein; LIM doma 98.1 4.2E-07 1.4E-11 79.3 -0.8 66 530-622 15-81 (91)
232 2l3k_A Rhombotin-2, linker, LI 98.1 4.7E-07 1.6E-11 83.6 -0.4 72 532-629 10-83 (123)
233 2l4z_A DNA endonuclease RBBP8, 97.9 9.2E-07 3.1E-11 81.7 -0.6 63 529-616 60-123 (123)
234 1x61_A Thyroid receptor intera 97.9 1.1E-06 3.7E-11 73.0 -1.4 65 530-622 5-71 (72)
235 1wig_A KIAA1808 protein; LIM d 97.8 1.8E-06 6E-11 72.1 -0.7 64 529-618 4-67 (73)
236 3f6q_B LIM and senescent cell 97.8 1.7E-06 5.7E-11 71.5 -1.8 61 529-616 10-72 (72)
237 2co8_A NEDD9 interacting prote 97.8 3E-06 1E-10 72.4 -0.4 65 530-620 15-81 (82)
238 2egq_A FHL1 protein; LIM domai 97.7 4.1E-06 1.4E-10 70.4 -1.1 69 505-613 3-76 (77)
239 1v6g_A Actin binding LIM prote 97.4 1.6E-05 5.5E-10 67.5 -1.3 38 529-572 14-51 (81)
240 2iyb_E Testin, TESS, TES; LIM 97.2 2.1E-05 7.3E-10 63.8 -1.8 58 530-613 2-63 (65)
241 1zfo_A LAsp-1; LIM domain, zin 96.4 0.0011 3.6E-08 45.6 1.5 29 616-645 3-31 (31)
242 2ys9_A Homeobox and leucine zi 81.0 0.57 2E-05 37.9 1.5 39 72-110 18-56 (70)
243 2ys9_A Homeobox and leucine zi 77.1 0.6 2E-05 37.8 0.5 40 710-749 17-56 (70)
244 3e2u_E CAP-Gly domain-containi 35.3 9.7 0.00033 27.5 0.4 24 491-514 6-29 (42)
245 2glo_A Brinker CG9653-PA; prot 33.3 21 0.00071 27.3 2.1 45 64-109 3-47 (59)
246 2elh_A CG11849-PA, LD40883P; s 32.1 44 0.0015 27.6 4.2 45 60-109 16-60 (87)
247 1znf_A 31ST zinc finger from X 31.9 18 0.00061 21.6 1.3 17 395-411 1-17 (27)
248 1ard_A Yeast transcription fac 30.5 21 0.00073 21.5 1.5 16 395-410 2-17 (29)
249 2dmj_A Poly (ADP-ribose) polym 30.4 19 0.00066 31.5 1.7 36 611-646 20-65 (106)
250 2m0e_A Zinc finger and BTB dom 29.7 24 0.00082 21.1 1.7 16 395-410 2-17 (29)
251 1paa_A Yeast transcription fac 29.6 24 0.00081 21.6 1.6 17 395-411 2-18 (30)
252 1rim_A E6APC2 peptide; E6-bind 26.3 27 0.00093 22.4 1.5 16 395-410 2-17 (33)
253 2lvu_A Zinc finger and BTB dom 32.0 14 0.00049 22.0 0.0 17 395-411 2-18 (26)
254 2kvf_A Zinc finger and BTB dom 25.5 16 0.00055 22.1 0.2 17 395-411 3-19 (28)
255 1hlv_A CENP-B, major centromer 25.0 40 0.0014 29.8 2.9 48 63-113 4-51 (131)
256 1klr_A Zinc finger Y-chromosom 24.9 31 0.0011 20.8 1.5 16 395-410 2-17 (30)
257 2kvh_A Zinc finger and BTB dom 23.8 18 0.00062 21.7 0.2 16 395-410 3-18 (27)
258 2m0d_A Zinc finger and BTB dom 22.1 22 0.00075 21.5 0.3 17 395-411 3-19 (30)
259 2ecm_A Ring finger and CHY zin 21.9 50 0.0017 24.2 2.4 37 618-654 7-53 (55)
260 1jko_C HIN recombinase, DNA-in 21.8 34 0.0012 24.4 1.4 39 67-110 6-44 (52)
261 2m0f_A Zinc finger and BTB dom 21.6 22 0.00076 21.4 0.3 17 395-411 2-18 (29)
262 2kfq_A FP1; protein, de novo p 21.3 23 0.00078 22.6 0.3 17 395-411 2-18 (32)
263 2lvt_A Zinc finger and BTB dom 26.6 20 0.00069 21.8 0.0 17 395-411 2-18 (29)
264 2glo_A Brinker CG9653-PA; prot 21.0 25 0.00087 26.8 0.6 45 703-748 3-47 (59)
265 1fv5_A First zinc finger of U- 20.9 22 0.00076 24.5 0.2 21 392-412 5-25 (36)
266 3nw0_A Non-structural maintena 20.3 31 0.0011 34.7 1.2 38 616-654 180-227 (238)
267 1p7a_A BF3, BKLF, kruppel-like 20.3 39 0.0013 21.9 1.4 18 393-410 9-26 (37)
No 1
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=1.2e-24 Score=213.98 Aligned_cols=157 Identities=27% Similarity=0.429 Sum_probs=125.8
Q ss_pred ccchhhhhhhhhhHH-HHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIALVL-SEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~-~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.+.|..|.+.|.+.. +.+.|+ .||+.||.|+.|+..+. +..|.+++.+ ||.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~------------------~~~f~~~g~~----yC~ 57 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDR------HWHSKCLKCSDCHVPLA------------------ERCFSRGESV----YCK 57 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSC------EECTTTSBCTTTCCBCC------------------SCCEESSSCE----ECH
T ss_pred CCccccCCCccCCcEEEEECCc------EEccccCccCCCCCcCC------------------CCCcccCCee----eec
Confidence 356999999999874 456677 99999999999995433 1226778888 456
Q ss_pred hhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEe-ecCcccccccccccccCCcccCCCC
Q psy17256 609 LICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFAL-HEDRVLCKSHYLELVDGGTTSSDDG 687 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~-~~g~~~C~~~y~e~~~~~~~s~~~g 687 (768)
.||.++|+++|.+|+++|.+.+.++.|+++.||.+||+|..|+++|..|+.|+. .++++||+.||.++...+. +
T Consensus 58 ~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~----~- 132 (169)
T 2rgt_A 58 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGS----G- 132 (169)
T ss_dssp HHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC-------
T ss_pred ccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccC----C-
Confidence 999999999999999999988888999999999999999999999977888865 5789999999988776421 0
Q ss_pred CCcccccCCCccccccccccHHHHHHHhhccccCCCCCHH
Q psy17256 688 ADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQ 727 (768)
Q Consensus 688 ~~~~~~~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~ 727 (768)
..+.+|+||.|+..|++.|+..|+.++||...
T Consensus 133 --------~~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 133 --------GSGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp ----------------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred --------CCCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 13467899999999999999999999998754
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.79 E-value=1.3e-20 Score=177.34 Aligned_cols=123 Identities=20% Similarity=0.435 Sum_probs=105.7
Q ss_pred cchhhhhhhhhhH-HHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 531 LEFHSFLKRIALV-LSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 531 ~~C~~c~k~Ia~~-~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
+.|..|.++|.++ ++.+.++ .||+.||+|+.|+..+. +....+|.+++.+| |..
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~---------------~~~~~~~~~~g~~y----C~~ 57 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQ------YWHEDCLSCDLCGCRLG---------------EVGRRLYYKLGRKL----CRR 57 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTE------EEETTTCBCTTTCCBCS---------------STTCCEEEETTEEE----CHH
T ss_pred ccCcCCCCEeCCcEEEEECCC------cccHHHcccCcCCCccc---------------cCCCeEEEECCEEe----ecC
Confidence 4599999999987 4667787 99999999999995432 11124678888994 569
Q ss_pred hhhhhccc--ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 610 ICFRSFGA--KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 610 ~y~~~f~~--~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
||.++|++ +|.+|+++|.+.|.+|.|+++.||++||+|..|+++|..|+.|++.++++||..||.+++.
T Consensus 58 ~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 58 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp HHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred chhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 99999999 9999999999878899999999999999999999999778899999999999999987654
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.78 E-value=2.8e-20 Score=173.79 Aligned_cols=120 Identities=14% Similarity=0.236 Sum_probs=102.9
Q ss_pred ccchhhhhhhhhh-HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIAL-VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~-~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
++.|..|.+.|.+ .++.+.|+ .||+.||.|+.|+..+. | ..++.+++.+| |.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~--------------~~f~~~~g~~y----C~ 55 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQ------NWHLKHFCCFDCDSILA---G--------------EIYVMVNDKPV----CK 55 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTE------EECGGGSBCTTTCCBCT---T--------------SEEEEETTEEE----EH
T ss_pred CCCCccCCCEeCCceEEeeCCC------CccCCCCCcCCCCCCCC---c--------------CEEEeECCEEe----ch
Confidence 4669999999985 45667787 99999999999995432 1 23577888884 56
Q ss_pred hhhhhhcccccccCCCCCCCCcceeeecCceec--ccCccccccccccCCCCceEeecCcccccccccccc
Q psy17256 609 LICFRSFGAKCSKCCRGIASSDWVRKARDHVYH--LACFACEACKRQLSTGEEFALHEDRVLCKSHYLELV 677 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H--~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~ 677 (768)
.||.++|+++|.+|+++|.+++.+|.|+++.|| ++||+|..|+++| .|+.|++.++++||+.||.+++
T Consensus 56 ~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l-~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 56 PCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp HHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBC-TTSEEEEETTEEESSHHHHHSC
T ss_pred HHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCcc-CCCeeEeECCEEcchHHhhhhc
Confidence 999999999999999999987789999999999 9999999999999 5889999999999998887543
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.78 E-value=2.2e-20 Score=186.74 Aligned_cols=123 Identities=24% Similarity=0.420 Sum_probs=105.6
Q ss_pred cchhhhhhhhhhHH-HHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 531 LEFHSFLKRIALVL-SEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 531 ~~C~~c~k~Ia~~~-~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
+.|..|.+.|.+.. +.+.++ .||+.||.|+.|+..+.. + | ..+|.+++.+| |..
T Consensus 6 ~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~~----------~----g-~~~~~~~g~~y----C~~ 60 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYAMDS------YWHSRCLKCSSCQAQLGD----------I----G-TSSYTKSGMIL----CRN 60 (188)
T ss_dssp CBBTTTCCBCCCSEEEEETTE------EECGGGCBCTTTCCBHHH----------H----C-SEEEEETTEEE----CHH
T ss_pred CcCccCCCEeCCceeEEecCc------EecccCcccCCCCccccc----------C----C-ceEEEeCCccc----ccc
Confidence 45999999999874 567777 999999999999964331 0 1 24678888884 569
Q ss_pred hhhhhccc--ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 610 ICFRSFGA--KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 610 ~y~~~f~~--~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
||.++|++ +|.+|+++|.+.|.+|.|+++.||.+||+|..|+++|..|+.|++.++++||+.||.+++.
T Consensus 61 cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~ 131 (188)
T 1rut_X 61 DYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI 131 (188)
T ss_dssp HHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC
T ss_pred ccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhc
Confidence 99999999 7999999999888899999999999999999999999778899999999999999987664
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.76 E-value=8.5e-20 Score=181.54 Aligned_cols=120 Identities=32% Similarity=0.526 Sum_probs=101.7
Q ss_pred ccchhhhhhhhhhHH-HHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIALVL-SEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~-~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.+.|..|.++|.+.. +.+.++ .||+.||.|+.|+..+. +..|.+++.+| |.
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~------------------~~~f~~~g~~y----C~ 111 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDR------HWHSKCLKCSDCHVPLA------------------ERCFSRGESVY----CK 111 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTE------EECSSTTSCTTTCCCCS------------------SCCEEETTEEE----CH
T ss_pred CCcCccCCCCccCceeEEecCC------eEccccCccCCCCCccC------------------CCceeECCEee----ec
Confidence 356999999999873 456777 99999999999995433 12267888884 56
Q ss_pred hhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEe-ecCcccccccccccc
Q psy17256 609 LICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFAL-HEDRVLCKSHYLELV 677 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~-~~g~~~C~~~y~e~~ 677 (768)
.||.++|+++|.+|+++|.+.+.++.|.++.||.+||+|..|+++|..|+.|+. .++++||+.||.++.
T Consensus 112 ~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 112 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp HHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred CccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 899999999999999999988888999999999999999999999977888865 578999999997643
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.67 E-value=6.1e-18 Score=169.57 Aligned_cols=121 Identities=14% Similarity=0.233 Sum_probs=99.4
Q ss_pred ccchhhhhhhhh-hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIA-LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia-~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
++.|..|.+.|. ...+.+.++ .||+.||.|+.|+..+. + ..++.+++.+| |.
T Consensus 7 ~~~C~~C~~~I~~~~~v~a~g~------~wH~~CF~C~~C~~~L~---------------~--~~~~~~~g~~y----C~ 59 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEEVQCEGS------SFHKSCFLCMVCKKNLD---------------S--TTVAVHGDEIY----CK 59 (192)
T ss_dssp CEECTTTCCEECSSCCEEETTE------EECTTTCBCTTTCCBCC---------------S--SSEEEETTEEE----EH
T ss_pred CCcCccCCCeecceeEEEeCCc------eecCCCCcCcccCCcCC---------------C--CeeEecCCEee----Ch
Confidence 356999999995 445567777 99999999999996533 1 23677888884 56
Q ss_pred hhhhhhcccc------------------------------------------------cccCCCCCCCCcceeeecCcee
Q psy17256 609 LICFRSFGAK------------------------------------------------CSKCCRGIASSDWVRKARDHVY 640 (768)
Q Consensus 609 ~~y~~~f~~~------------------------------------------------C~~C~~~I~~~e~~~~a~~~~~ 640 (768)
.||.++|+++ |.+|+++|.+.+. +.|+++.|
T Consensus 60 ~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~-v~a~~~~~ 138 (192)
T 1b8t_A 60 SCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEK-VIGAGKSW 138 (192)
T ss_dssp HHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSC-EEETTEEE
T ss_pred hhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEE-EecCCCcc
Confidence 8999999887 7789999987655 45999999
Q ss_pred cccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 641 HLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 641 H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
|.+||+|..|+++|. +..|+..++++||+.||.++...
T Consensus 139 H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~ 176 (192)
T 1b8t_A 139 HKSCFRCAKCGKSLE-STTLADKDGEIYCKGCYAKNFGP 176 (192)
T ss_dssp CTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHTCC
T ss_pred chhcCCccccCCCCC-CCcccccCCEEeCHHHHHHhcCC
Confidence 999999999999995 45699999999999999887653
No 7
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-17 Score=140.38 Aligned_cols=67 Identities=30% Similarity=0.481 Sum_probs=62.6
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
...++.+|.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|+..+.
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4456788899999999999999999999999999999999999999999999999999999997654
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.1e-17 Score=138.90 Aligned_cols=66 Identities=33% Similarity=0.425 Sum_probs=61.6
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
...++.+|.||.||..|+..||..|..++||+..+|++||..+||++.+|+|||||||+|+|+...
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345677889999999999999999999999999999999999999999999999999999998654
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=137.37 Aligned_cols=66 Identities=50% Similarity=0.755 Sum_probs=61.5
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
..+.+.+|.||.||..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999998654
No 10
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=8.4e-17 Score=137.76 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=58.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhh----CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQL----DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~----~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
..+++||.||.||..|+..||..|+. ++||+..+|++||..+||++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34577889999999999999999999 999999999999999999999999999999999886
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.2e-16 Score=133.47 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=60.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.++.||.|+.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 3567888999999999999999999999999999999999999999999999999999998654
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.5e-16 Score=135.05 Aligned_cols=67 Identities=37% Similarity=0.500 Sum_probs=62.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
.++.||.|+.||..|+..||..|..++||+..+|++||..+||++.+|+|||||||+|+|++.+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 3567889999999999999999999999999999999999999999999999999999999766443
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.62 E-value=1.5e-16 Score=135.98 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=57.3
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhh-----CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQL-----DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~-----~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
...++||.||.||..|+..|| .|.. ++||+..+|++||..+||++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678899999999999999 8999 999999999999999999999999999999999886
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=132.03 Aligned_cols=64 Identities=36% Similarity=0.618 Sum_probs=60.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.++.+|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 4567889999999999999999999999999999999999999999999999999999998654
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=132.40 Aligned_cols=64 Identities=30% Similarity=0.611 Sum_probs=60.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.++.+|.||.||..|+..||..|+.++||+..++.+||..+||++.+|+|||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999755
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=131.82 Aligned_cols=63 Identities=37% Similarity=0.546 Sum_probs=59.5
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
++.+|.|+.||..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 456888999999999999999999999999999999999999999999999999999998654
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.62 E-value=3e-16 Score=133.55 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=61.9
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
.+++++|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 4556788899999999999999999999999999999999999999999999999999999876543
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=1.8e-16 Score=129.66 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=56.3
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
..+|.|+.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 19
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=1.3e-16 Score=129.92 Aligned_cols=60 Identities=30% Similarity=0.521 Sum_probs=53.1
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
+++|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 567889999999999999999999999999999999999999999999999999999985
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=131.97 Aligned_cols=64 Identities=30% Similarity=0.425 Sum_probs=59.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.++.||.|+.||..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4567889999999999999999999999999999999999999999999999999999998643
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=133.34 Aligned_cols=66 Identities=47% Similarity=0.825 Sum_probs=61.4
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
++.||.||.||..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|++.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999999999999999999999999765443
No 22
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=3.2e-16 Score=134.45 Aligned_cols=66 Identities=35% Similarity=0.536 Sum_probs=61.4
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
++.+|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 467888999999999999999999999999999999999999999999999999999999765443
No 23
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.61 E-value=8.6e-17 Score=144.07 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=80.8
Q ss_pred ccchhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccc
Q psy17256 530 HLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLS 607 (768)
Q Consensus 530 g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC 607 (768)
++.|..|.++|. +..+.+.++ .||..||.|+.|+..+. | ..++.+++.+| |
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~--------------~~~~~~~g~~y----C 57 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNR------FWHDTCFRCAKCLHPLA---N--------------ETFVAKDNKIL----C 57 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTE------EEETTTCCCSSSCCCTT---S--------------SCCEEETTEEE----C
T ss_pred CCcCcccCCcccCCceEEEECcc------ChhhcCCcccccCCCCC---c--------------CeeECcCCEEE----C
Confidence 456999999996 566777787 99999999999995432 1 23577888885 5
Q ss_pred hhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccc
Q psy17256 608 VLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACK 651 (768)
Q Consensus 608 ~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~ 651 (768)
..||.++|+++|.+|+++|.++|.+|.|+++.||++||+|..|+
T Consensus 58 ~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 58 NKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp HHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred hhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 69999999999999999999888899999999999999999985
No 24
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=5.2e-16 Score=130.20 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=59.2
Q ss_pred CCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCCCC
Q psy17256 63 VRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 126 (768)
Q Consensus 63 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~~~ 126 (768)
.|+.||.+|+.+||+.|..++||+..+|++||..+||++++|+|||||||+|+|+....|....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w~~~~ 69 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDN 69 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSSTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999999877776544
No 25
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.60 E-value=4.1e-16 Score=132.71 Aligned_cols=65 Identities=23% Similarity=0.407 Sum_probs=60.8
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
..++.+|.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|+..+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998754
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=3.7e-16 Score=129.70 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=60.8
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCC
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 124 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~ 124 (768)
+||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccccc
Confidence 57889999999999999999999999999999999999999999999999999999998765543
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-16 Score=135.28 Aligned_cols=66 Identities=33% Similarity=0.434 Sum_probs=61.7
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
..++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||..+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 356778899999999999999999999999999999999999999999999999999999997653
No 28
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.60 E-value=2.6e-16 Score=127.80 Aligned_cols=58 Identities=33% Similarity=0.556 Sum_probs=53.4
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
.||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=3.3e-16 Score=130.04 Aligned_cols=64 Identities=31% Similarity=0.422 Sum_probs=60.0
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
+||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4788999999999999999999999999999999999999999999999999999999766443
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=5.6e-16 Score=131.17 Aligned_cols=68 Identities=43% Similarity=0.560 Sum_probs=62.8
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
..++++|.||.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..+.+.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999876543
No 31
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.60 E-value=5.8e-16 Score=130.39 Aligned_cols=66 Identities=27% Similarity=0.461 Sum_probs=61.0
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
..+.+|.|+.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 345788899999999999999999999999999999999999999999999999999999975543
No 32
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-16 Score=136.39 Aligned_cols=67 Identities=30% Similarity=0.481 Sum_probs=62.6
Q ss_pred cCCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 694 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 694 ~~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
...++.++.||.|+..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+.
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788899999999999999999999999999999999999999999999999999999998754
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.60 E-value=3.2e-16 Score=134.73 Aligned_cols=65 Identities=43% Similarity=0.580 Sum_probs=59.6
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
..++++|.||.||..|+..||..|..++||+..+|.+||..+||++.+|++||||||+|+|++..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 35677889999999999999999999999999999999999999999999999999999998754
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.60 E-value=4.2e-16 Score=136.13 Aligned_cols=64 Identities=30% Similarity=0.465 Sum_probs=55.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
..++.+|.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|++.
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 3456788999999999999999999999999999999999999999999999999999999864
No 35
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.60 E-value=7.3e-16 Score=135.95 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=62.8
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 55 HSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 55 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
..++++||.||.||..|+..||..|..++||+..+|.+||..+||++.+|+|||||||+|+|+......
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp SCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999766543
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.59 E-value=2.6e-16 Score=130.67 Aligned_cols=64 Identities=41% Similarity=0.549 Sum_probs=60.4
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
+++|.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 5688999999999999999999999999999999999999999999999999999999976643
No 37
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=6.1e-16 Score=129.18 Aligned_cols=63 Identities=27% Similarity=0.434 Sum_probs=59.0
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 356778999999999999999999999999999999999999999999999999999998654
No 38
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=4.8e-16 Score=124.86 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=55.4
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
||.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 39
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=6.9e-16 Score=128.08 Aligned_cols=64 Identities=22% Similarity=0.432 Sum_probs=60.1
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCC
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~ 123 (768)
+||.||.||..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+|+..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 65 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKA 65 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhh
Confidence 5788999999999999999999999999999999999999999999999999999999776543
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-16 Score=132.69 Aligned_cols=70 Identities=43% Similarity=0.568 Sum_probs=65.6
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccCC
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 765 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~~ 765 (768)
.+++++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||+++.+++++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q~qq 75 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQ 75 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhhccC
Confidence 4567888999999999999999999999999999999999999999999999999999999999887753
No 41
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=4.5e-16 Score=128.47 Aligned_cols=61 Identities=43% Similarity=0.723 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
+++|.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678899999999999999999999999999999999999999999999999999999864
No 42
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.58 E-value=7e-16 Score=124.79 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=55.6
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
||.||.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 43
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-16 Score=133.23 Aligned_cols=65 Identities=51% Similarity=0.771 Sum_probs=61.1
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
..+.++.||.|+.+|+..|+..|..++||+..++..||.++||++.+|+|||||||+|+||+...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 46678899999999999999999999999999999999999999999999999999999997643
No 44
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-16 Score=132.41 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=59.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhC----CCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLD----SNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~----~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
.++.+|.||.||..|+.+||..|+.+ +||+..+|++||..+||++.+|+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 45678899999999999999999999 9999999999999999999999999999999999853
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.57 E-value=7.3e-16 Score=132.46 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
++.||.||.||..|+..||..|..++||+..+|++||..+||++++|+|||||||+|+|++.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 456889999999999999999999999999999999999999999999999999999998653
No 46
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=7.7e-16 Score=127.80 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=62.8
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccCC
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 765 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~~ 765 (768)
+++.|+.||.+|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+..+.+.+++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~qq 68 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQ 68 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCCSSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHhhhcC
Confidence 4678999999999999999999999999999999999999999999999999999999988776653
No 47
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.56 E-value=1.2e-15 Score=129.92 Aligned_cols=69 Identities=23% Similarity=0.406 Sum_probs=63.6
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccC
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 764 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~ 764 (768)
.++.++.|+.|+..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|+........
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~~ 74 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYE 74 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccCC
Confidence 456788899999999999999999999999999999999999999999999999999999987766543
No 48
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=125.91 Aligned_cols=62 Identities=37% Similarity=0.584 Sum_probs=58.6
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.||.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999999999999999999999999999999999999987654
No 49
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=6.2e-16 Score=129.14 Aligned_cols=64 Identities=27% Similarity=0.472 Sum_probs=60.2
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 4568889999999999999999999999999999999999999999999999999999997653
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.56 E-value=9.8e-16 Score=135.99 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=58.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
.....+|.|+.||..|+..||..|..++||+..+|++||..+||++++|+|||||||+|+|+....|
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3445677899999999999999999999999999999999999999999999999999999976544
No 51
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-15 Score=127.68 Aligned_cols=64 Identities=36% Similarity=0.546 Sum_probs=60.2
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 4567889999999999999999999999999999999999999999999999999999997654
No 52
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.56 E-value=7.1e-16 Score=131.98 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=58.1
Q ss_pred CCccccccccccHHHHHHHhhcccc----CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQL----DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~----~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
.++++|.||.|+.+|+..||..|+. ++||+..++++||..+||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4667889999999999999999999 999999999999999999999999999999999876
No 53
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=7.9e-16 Score=128.51 Aligned_cols=64 Identities=30% Similarity=0.625 Sum_probs=60.6
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 5578889999999999999999999999999999999999999999999999999999998654
No 54
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.55 E-value=9.8e-16 Score=124.36 Aligned_cols=60 Identities=23% Similarity=0.459 Sum_probs=48.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
.++.+|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999999999999999999999999999999975
No 55
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.55 E-value=1.2e-15 Score=123.51 Aligned_cols=58 Identities=38% Similarity=0.504 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 63 VRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 63 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
+|+.||..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999998653
No 56
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.4e-15 Score=135.29 Aligned_cols=65 Identities=29% Similarity=0.444 Sum_probs=57.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.++.++.||.||..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 35678889999999999999999999999999999999999999999999999999999997654
No 57
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=9.8e-16 Score=131.36 Aligned_cols=66 Identities=35% Similarity=0.536 Sum_probs=61.9
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 456888999999999999999999999999999999999999999999999999999999876654
No 58
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.5e-15 Score=130.25 Aligned_cols=68 Identities=37% Similarity=0.482 Sum_probs=62.9
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
.++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~ 71 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQN 71 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCC
Confidence 35678889999999999999999999999999999999999999999999999999999998766543
No 59
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.55 E-value=1.8e-15 Score=121.39 Aligned_cols=57 Identities=23% Similarity=0.486 Sum_probs=54.8
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
++|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 60
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.55 E-value=6.3e-16 Score=125.91 Aligned_cols=61 Identities=30% Similarity=0.504 Sum_probs=53.6
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
+.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4578899999999999999999999999999999999999999999999999999999863
No 61
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=1e-15 Score=127.81 Aligned_cols=65 Identities=35% Similarity=0.616 Sum_probs=60.7
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 35578889999999999999999999999999999999999999999999999999999997654
No 62
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=3.2e-15 Score=132.41 Aligned_cols=66 Identities=26% Similarity=0.404 Sum_probs=62.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcC---------------CCcccccccccccHHHHhhhccc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------LSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~---------------l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.+++||.|+.|+..|+.+||..|+.++||+..+|++||..++ |++.+|++||||||+|+|++.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999998775
Q ss_pred C
Q psy17256 122 G 122 (768)
Q Consensus 122 ~ 122 (768)
.
T Consensus 84 ~ 84 (95)
T 2cuf_A 84 A 84 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 63
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.54 E-value=1e-15 Score=125.12 Aligned_cols=61 Identities=31% Similarity=0.482 Sum_probs=56.3
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
+.++.|+.|+..|+..||..|..++||+...+..||..+||++.+|+|||||||+|+||.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 3578899999999999999999999999999999999999999999999999999999964
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=2.2e-15 Score=121.33 Aligned_cols=60 Identities=28% Similarity=0.353 Sum_probs=55.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
.+++||.||.|+.+||..|+..|+. ++||+...|+.||.++||++++|||||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467899999999999999999999 99999999999999999999999999999997543
No 65
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=3.3e-15 Score=125.46 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=56.8
Q ss_pred CCCCccCCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 61 KRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.+.|+.||..|+..||..|.. ++||+..+|.+||..+||++.+|+|||||||+|+|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 457899999999999999996 999999999999999999999999999999999999764
No 66
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=3.6e-15 Score=125.53 Aligned_cols=61 Identities=30% Similarity=0.440 Sum_probs=57.3
Q ss_pred CCCCccCCHHHHHHHHHhhhh-CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 61 KRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~-~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
++.||.||..|+..||..|.. ++||+..+|.+||..+||++.+|+|||||||+|+|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 467899999999999999995 9999999999999999999999999999999999997643
No 67
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=6.9e-15 Score=127.78 Aligned_cols=59 Identities=29% Similarity=0.418 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCC
Q psy17256 66 TFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 124 (768)
Q Consensus 66 ~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~ 124 (768)
.||..|+.+||..|..++||+..+|.+||..+||++++|+|||||||+||++..+....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~ 75 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEI 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhc
Confidence 69999999999999999999999999999999999999999999999999987665543
No 68
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-15 Score=126.96 Aligned_cols=61 Identities=25% Similarity=0.455 Sum_probs=57.1
Q ss_pred CCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.+.|+.||..|+..||..|..++||+..+|++||..+||++.+|++||||||+|+|+..+.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 4458999999999999999999999999999999999999999999999999999996654
No 69
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.54 E-value=1.3e-15 Score=130.27 Aligned_cols=61 Identities=28% Similarity=0.464 Sum_probs=57.2
Q ss_pred CCCccccccccccHHHHHHHhhcccc-----CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQL-----DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
..++++|.||.||.+|+..|| .|.. ++||+..++++||..+||++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 346678899999999999999 7999 999999999999999999999999999999999876
No 70
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.54 E-value=2.3e-15 Score=132.79 Aligned_cols=68 Identities=22% Similarity=0.385 Sum_probs=62.6
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
..++.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|++.....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 34667888999999999999999999999999999999999999999999999999999999876554
No 71
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.54 E-value=9.1e-16 Score=127.38 Aligned_cols=65 Identities=40% Similarity=0.532 Sum_probs=61.2
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|++++.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhccC
Confidence 46788999999999999999999999999999999999999999999999999999999877653
No 72
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.54 E-value=2.3e-15 Score=124.93 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=60.7
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
.++.||.|+.+|+..||..|..++||+...+..||..+||++.+|+|||||||+|+|++......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccccc
Confidence 47789999999999999999999999999999999999999999999999999999998765543
No 73
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-15 Score=125.97 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=56.0
Q ss_pred CCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 62 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 62 r~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
++|+.||..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 346679999999999999999999999999999999999999999999999999997654
No 74
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.53 E-value=2.2e-15 Score=128.21 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=61.2
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.++.++.|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 45678889999999999999999999999999999999999999999999999999999998764
No 75
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.53 E-value=2.4e-15 Score=119.91 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
|.||..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 76
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=125.39 Aligned_cols=64 Identities=27% Similarity=0.471 Sum_probs=59.2
Q ss_pred CCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
..++.|+.||..|+..||..|..++||+..++++||..+||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 3467899999999999999999999999999999999999999999999999999999876543
No 77
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=127.04 Aligned_cols=63 Identities=30% Similarity=0.438 Sum_probs=59.6
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
++.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 456888999999999999999999999999999999999999999999999999999998754
No 78
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.4e-15 Score=127.77 Aligned_cols=72 Identities=25% Similarity=0.509 Sum_probs=66.0
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
||+.||.++|+++|++|+++|.+.+.++.|+++.||.+||+|..|+++| .+..|+..++++||+.||.++..
T Consensus 5 yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~~C~~c~~~~~~ 76 (82)
T 2ehe_A 5 SSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQDSELLCNDCYCSAFS 76 (82)
T ss_dssp CCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEEEETTEEEETTTSSCCGG
T ss_pred echhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCcc-CCCccEeeCCEEECHHHHhhhcC
Confidence 5668999999999999999999767799999999999999999999999 57789999999999999987664
No 79
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.53 E-value=1.5e-15 Score=126.04 Aligned_cols=64 Identities=31% Similarity=0.422 Sum_probs=60.1
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+++.|+.||.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||..+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4778999999999999999999999999999999999999999999999999999999876543
No 80
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.53 E-value=1.6e-15 Score=123.08 Aligned_cols=58 Identities=33% Similarity=0.556 Sum_probs=53.4
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 81
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-15 Score=128.09 Aligned_cols=66 Identities=47% Similarity=0.825 Sum_probs=61.5
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456888999999999999999999999999999999999999999999999999999999876544
No 82
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.52 E-value=2.3e-15 Score=129.40 Aligned_cols=64 Identities=44% Similarity=0.600 Sum_probs=59.8
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
.++.++.|+.|+..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+||+.+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5677889999999999999999999999999999999999999999999999999999999865
No 83
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.9e-15 Score=125.05 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=59.5
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.+.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3457789999999999999999999999999999999999999999999999999999997653
No 84
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.52 E-value=3.6e-15 Score=144.75 Aligned_cols=62 Identities=27% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
..++||.||.||..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35778899999999999999999999999999999999999999999999999999999985
No 85
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.51 E-value=3.9e-15 Score=125.27 Aligned_cols=64 Identities=28% Similarity=0.505 Sum_probs=60.0
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.+.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4568889999999999999999999999999999999999999999999999999999997544
No 86
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=4.5e-15 Score=127.68 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=66.5
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
||+.||.++|+++|.+|+++|.+.+.++.|+++.||.+||+|..|+++|. +..|+.+++++||+.||.++...
T Consensus 5 yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~ 77 (82)
T 1x63_A 5 SSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG-TGSFFPKGEDFYCVTCHETKFAS 77 (82)
T ss_dssp CCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT-TSCEEEETTEEEEHHHHHHHTSC
T ss_pred CchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC-CCccEeeCCEEECHHHHHHHhCC
Confidence 56799999999999999999998888999999999999999999999995 45799999999999999887653
No 87
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-15 Score=128.83 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=60.7
Q ss_pred CCccccccccccHHHHHHHhhccccC----CCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLD----SNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~----~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.++.++.||.|+.+|+..||..|..+ +||+..++..||.++||++.+|+|||||||+|+|+....
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 45678889999999999999999999 999999999999999999999999999999999996543
No 88
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=9.5e-15 Score=122.95 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=59.3
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
.++.++.|+.|+..|+..||..|.. ++||+..++++||..+||++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3567788999999999999999987 999999999999999999999999999999999998654
No 89
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=3.2e-15 Score=120.06 Aligned_cols=57 Identities=28% Similarity=0.493 Sum_probs=55.2
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467999999999999999999999999999999999999999999999999999997
No 90
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.1e-15 Score=126.35 Aligned_cols=69 Identities=23% Similarity=0.445 Sum_probs=63.2
Q ss_pred cchhhhhhhcccccccCCCCCCC---CcceeeecCceecccCccccccccccCCCCceEeecCcccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIAS---SDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLE 675 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~---~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e 675 (768)
||+.||.++|+++|++|+++|.+ .+.++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.+
T Consensus 5 yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 5 SSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC-TTSCCCEETTEECCHHHHHH
T ss_pred EchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC-CCCccEeECCEEEChHHhcc
Confidence 56799999999999999999997 45689999999999999999999999 57789999999999999964
No 91
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=2.1e-15 Score=124.41 Aligned_cols=61 Identities=43% Similarity=0.723 Sum_probs=58.1
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
+.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3578899999999999999999999999999999999999999999999999999999875
No 92
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=4.5e-15 Score=144.41 Aligned_cols=66 Identities=23% Similarity=0.441 Sum_probs=52.7
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
..+++||.||.|+..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+||..+.
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 456778899999999999999999999999999999999999999999999999999999997654
No 93
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-15 Score=129.40 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHc---------------------CCCcccccccccccHHHH
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT---------------------GLSKRVTQVWFQNSRARQ 115 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l---------------------~l~~~~vqvWFqNrRak~ 115 (768)
.++.||.||.|++.|+.+||+.|+.++||+..+|++||..+ .|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhcccCCC
Q psy17256 116 KKHLHTGKM 124 (768)
Q Consensus 116 k~~~~~~~~ 124 (768)
|++.+....
T Consensus 83 kr~~~~~~~ 91 (102)
T 2da6_A 83 AFRQKLAMD 91 (102)
T ss_dssp HHHHHHHHS
T ss_pred HHhhHhhhc
Confidence 987665443
No 94
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-15 Score=122.97 Aligned_cols=63 Identities=37% Similarity=0.582 Sum_probs=59.4
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|++||||||+|+|++....+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcc
Confidence 678999999999999999999999999999999999999999999999999999999876544
No 95
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=4.3e-15 Score=132.16 Aligned_cols=66 Identities=30% Similarity=0.475 Sum_probs=57.8
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+.|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~gG 97 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGG 97 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhccCc
Confidence 557888999999999999999999999999999999999999999999999999999999987653
No 96
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=7.4e-15 Score=140.32 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=63.5
Q ss_pred HHhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCccccc
Q psy17256 26 QVLQANFQLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQ 105 (768)
Q Consensus 26 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vq 105 (768)
..|+.|.+......... .......+++||.||.||..|+..||..|..++||+..+|.+||..+||++++|+
T Consensus 61 PlL~~wl~e~e~~~~~~--------~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 61 AILSKWLEEAEQVGALY--------NEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp HHHHHHHHHCCC------------------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHhhcccCcc--------CcccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 34777877664332111 1122234567888999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHhhh
Q psy17256 106 VWFQNSRARQKKH 118 (768)
Q Consensus 106 vWFqNrRak~k~~ 118 (768)
|||||||+|+||+
T Consensus 133 vWFqNRR~k~kr~ 145 (146)
T 1au7_A 133 VWFCNRRQREKRV 145 (146)
T ss_dssp HHHHHHHHHTTSC
T ss_pred hhhHhhhhhhhcc
Confidence 9999999999985
No 97
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-15 Score=126.32 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=61.3
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccCC
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 765 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~~ 765 (768)
..+.|+.||.+|+..||..|..++||+..++..||.++||++.+|++||||||+|+||+.+...+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~~~~s 74 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSRSGPS 74 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSSCCCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccCCCCC
Confidence 3456899999999999999999999999999999999999999999999999999999877766543
No 98
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.50 E-value=3.9e-15 Score=130.01 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=56.2
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
.++.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 88 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK 88 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhcC
Confidence 3557888999999999999999999999999999999999999999999999999999999753
No 99
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.1e-14 Score=125.13 Aligned_cols=73 Identities=26% Similarity=0.539 Sum_probs=63.1
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccCC
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDGG 680 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~~ 680 (768)
||..||.++|+++|++|+++|.+ .+|.|+++.||.+||+|..|+++|..|..|...++.+||..||.......
T Consensus 5 yC~~dy~~~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 5 SSGLDYQRLYGTRCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCCSCGGGSCCCBCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCC
T ss_pred cchHHHHhHhCCcCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCC
Confidence 67799999999999999999995 48999999999999999999999976766655555579999998777643
No 100
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.50 E-value=4.2e-15 Score=120.19 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=55.5
Q ss_pred ccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5779999999999999999999999999999999999999999999999999999985
No 101
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.49 E-value=4e-15 Score=127.85 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=54.9
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
++.++.||.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 456888999999999999999999999999999999999999999999999999999999753
No 102
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=124.35 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=55.3
Q ss_pred ccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccCCC
Q psy17256 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 124 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~~~ 124 (768)
..||..|+.+||..|..++||+..+|++||..+||++++|+|||||||+|+|+..+....
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 349999999999999999999999999999999999999999999999999987665543
No 103
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.49 E-value=3.7e-15 Score=120.55 Aligned_cols=58 Identities=38% Similarity=0.504 Sum_probs=50.7
Q ss_pred ccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 702 VRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 702 ~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
.|+.||.+|+..||..|..++||+...+..||..+||++.+|++||||||+|+||+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999764
No 104
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=8.1e-15 Score=123.04 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=59.5
Q ss_pred ccccccccHHHHHHHhhcccc-CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccC
Q psy17256 700 KRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 764 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~ 764 (768)
.+.|+.|+.+|+..||..|.. ++||+...+..||..+||++.+|+|||||||+|+||+.+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~ 67 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSEC 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccCCCcC
Confidence 356899999999999999996 99999999999999999999999999999999999988665543
No 105
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.49 E-value=1.4e-14 Score=121.88 Aligned_cols=63 Identities=27% Similarity=0.476 Sum_probs=58.7
Q ss_pred CCCCCccCCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 60 AKRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
+||.|+.|+..|+..||..| ..++||+..++.+||..+||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 36789999999999999999 9999999999999999999999999999999999999876543
No 106
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.1e-14 Score=124.70 Aligned_cols=71 Identities=23% Similarity=0.573 Sum_probs=64.6
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
||+.||.++|+++|.+|+++|.+. +|.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++...
T Consensus 5 yC~~cy~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~~ 75 (80)
T 2cuq_A 5 SSGPCYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYCVACFGELFAS 75 (80)
T ss_dssp SCCCCCCCCSSCCCTTTCCCCCSC--CEESSSSEECTTTCBCSSSCCBC-TTCCEEECSSSEEEHHHHHHHTTC
T ss_pred EcHHHHccccCCcCCCCCCEecCc--EEEECCchhhhhhCCcccCCCcC-CCCeeEeECCEEECHHHHHHHcCC
Confidence 566899999999999999999865 78899999999999999999999 577899999999999999887653
No 107
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=1.1e-14 Score=122.59 Aligned_cols=64 Identities=28% Similarity=0.401 Sum_probs=59.1
Q ss_pred ccccccccHHHHHHHhhcccc-CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 700 KRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
++.|+.|+.+|+..||..|.. ++||+..++..||..+||++.+|+|||||||+|+||+.+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~~~~ 67 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSE 67 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccCCCc
Confidence 456899999999999999994 9999999999999999999999999999999999998865543
No 108
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=8.2e-15 Score=125.77 Aligned_cols=71 Identities=28% Similarity=0.515 Sum_probs=64.6
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEe-ecCccccccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFAL-HEDRVLCKSHYLELVD 678 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~-~~g~~~C~~~y~e~~~ 678 (768)
||+.||.++|+++|.+|+++|. +.+|.|+++.||.+||+|..|+++|..|..|.+ .++++||+.||.++..
T Consensus 5 yC~~~y~~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 5 SSGKDYWGKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CCCCCSSCCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cchhHHhhhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 6779999999999999999999 448999999999999999999999977888884 8899999999987765
No 109
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.47 E-value=7.2e-15 Score=117.10 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=51.2
Q ss_pred ccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 704 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
|.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999986
No 110
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=8.6e-15 Score=119.94 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCCCCCccCCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 59 KAKRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 59 ~~rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
..++.|+.|+..|+..||..| ..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357789999999999999999 99999999999999999999999999999999999987
No 111
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.47 E-value=1e-14 Score=122.16 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=54.5
Q ss_pred CCCCccCCHHHHHHHHHhh-hhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 61 KRVRTTFTEEQLQVLQANF-QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F-~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
.+.|+.++..|+.+||..| ..++||+..+|++||..+||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4456678899999999999 9999999999999999999999999999999999999754
No 112
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-14 Score=122.09 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=56.8
Q ss_pred cccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 701 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 701 r~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
++|+.||.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|++.+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4567799999999999999999999999999999999999999999999999999987644
No 113
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1e-14 Score=122.38 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=54.5
Q ss_pred ccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhh
Q psy17256 702 VRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759 (768)
Q Consensus 702 ~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~ 759 (768)
.|+.||.+|+..|+..|..++||+..+++.||..+||++++|+|||||||+|+|+...
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999998643
No 114
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=116.74 Aligned_cols=57 Identities=23% Similarity=0.486 Sum_probs=54.6
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHH
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 755 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~k 755 (768)
+++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467799999999999999999999999999999999999999999999999999986
No 115
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.46 E-value=8.6e-15 Score=127.55 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=57.9
Q ss_pred CCCCccCCHHHHHHHHHhh---hhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 61 KRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F---~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
||.|+.|+..|+..||..| ..++||+..++.+||..+||++.+|++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 9999999999999999999999999999999999999976554
No 116
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.46 E-value=7.1e-15 Score=119.25 Aligned_cols=59 Identities=22% Similarity=0.448 Sum_probs=48.6
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHH
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 755 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~k 755 (768)
++.++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45788899999999999999999999999999999999999999999999999999976
No 117
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.46 E-value=5.1e-14 Score=121.45 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=59.2
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcccC
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~~ 122 (768)
.++++.|+.|+..|+..|+..|.. ++||+..+|++||..+||++.+|++||||||+|+++.....
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 456778999999999999999987 69999999999999999999999999999999999875543
No 118
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.46 E-value=1.4e-14 Score=128.71 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=54.1
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHH------------------cC---CCcccccccccccHHH
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI------------------TG---LSKRVTQVWFQNSRAR 114 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~------------------l~---l~~~~vqvWFqNrRak 114 (768)
..++.||.|+.|+..|+.+||..|+.++||+...|++||.. +| |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34677889999999999999999999999999999999999 88 9999999999999999
Q ss_pred HhhhcccC
Q psy17256 115 QKKHLHTG 122 (768)
Q Consensus 115 ~k~~~~~~ 122 (768)
++++.+..
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 88765443
No 119
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.2e-14 Score=129.02 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=56.3
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
....++.|+.|+.+|+..||..|..++||+..++..||.++||++++|+|||||||+|+||..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345667899999999999999999999999999999999999999999999999999999964
No 120
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.3e-14 Score=124.51 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=56.9
Q ss_pred cccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccCC
Q psy17256 705 TFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKS 765 (768)
Q Consensus 705 ~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~~ 765 (768)
.+|.+|+..||..|..++||+..++..||..+||++++|+|||||||+||||+++...+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~~~~ 77 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDE 77 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCCCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhhccc
Confidence 7999999999999999999999999999999999999999999999999999877666543
No 121
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-14 Score=121.98 Aligned_cols=65 Identities=26% Similarity=0.461 Sum_probs=60.5
Q ss_pred cccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcccc
Q psy17256 699 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKM 763 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~ 763 (768)
.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||.+.....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~ 70 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCL 70 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCCT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCCC
Confidence 46789999999999999999999999999999999999999999999999999999998765543
No 122
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.45 E-value=3e-14 Score=115.13 Aligned_cols=55 Identities=27% Similarity=0.455 Sum_probs=53.2
Q ss_pred CccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 64 RTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 64 Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
|+.|+..|+..||..|.. ++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999974
No 123
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.4e-14 Score=126.77 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=63.8
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhC---------------CCCCccccccccchhHHHhhhhc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------LSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------ls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.++.+|.|+.|+..|+..||..|..++||+...++.||..++ |++.+|++||||||+|+|++.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 456788999999999999999999999999999999999999 99999999999999999999876
Q ss_pred cccC
Q psy17256 761 GKMK 764 (768)
Q Consensus 761 ~~~~ 764 (768)
....
T Consensus 84 ~~~~ 87 (95)
T 2cuf_A 84 AAIL 87 (95)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 5533
No 124
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=1.6e-14 Score=116.30 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=55.5
Q ss_pred CCccccccccccHHHHHHHhhcccc-CCCCCHHHHHHHHHHhCCCCCccccccccchhHH
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~ 754 (768)
.++.+|.||.|+.+|+..|+..|+. ++||+...++.||.++||++++|+|||||+|--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 3567999999999999999999999 9999999999999999999999999999999753
No 125
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-14 Score=118.05 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
...|..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+|++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999986543
No 126
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3e-14 Score=119.92 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=59.4
Q ss_pred CccccccccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
++.++.|+.|+.+|+..|+..|.. ++||+..++..||.++||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 456788999999999999999976 9999999999999999999999999999999999997654
No 127
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.44 E-value=2.6e-14 Score=115.72 Aligned_cols=52 Identities=31% Similarity=0.565 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 67 FTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 67 ~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
-|..|+.+||..|..++||+..+|.+||..+||++++|++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3689999999999999999999999999999999999999999999999974
No 128
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=3e-14 Score=121.85 Aligned_cols=70 Identities=29% Similarity=0.510 Sum_probs=63.2
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
||+.||.++|+++|++|+++|.+. +|.|+++.||.+||+|..|+++|. +..|+.+++++||+.||.++..
T Consensus 5 yC~~~y~~~~~~~C~~C~~~I~~~--~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 5 SSGKDFLAMFSPKCGGCNRPVLEN--YLSAMDTVWHPECFVCGDCFTSFS-TGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CCCCCCCCCCSCBCTTTCCBCCSS--CEEETTEEECTTTCBCSSSCCBSC-SSCCEESSSCEECHHHHHHHHS
T ss_pred cchhHHhhhcCCccccCCCeecce--eEEECCCeEecCcCChhhCCCCCC-CCcEEeECCEEECHHHHHHHcC
Confidence 566899999999999999999964 789999999999999999999995 4469999999999999987765
No 129
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.43 E-value=2.3e-14 Score=138.26 Aligned_cols=61 Identities=33% Similarity=0.500 Sum_probs=57.7
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
+++||.||.|+..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4667889999999999999999999999999999999999999999999999999999974
No 130
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.42 E-value=4.5e-14 Score=118.82 Aligned_cols=63 Identities=25% Similarity=0.471 Sum_probs=58.9
Q ss_pred ccccccccHHHHHHHhhcc---ccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 700 KRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
++.|+.|+.+|+..|+..| ..++||+..++..||..+||++.+|++||||||+|+|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6789999999999999999 99999999999999999999999999999999999999766543
No 131
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.42 E-value=6.3e-14 Score=122.04 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=56.2
Q ss_pred CCCCCCCccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 58 SKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 58 ~~~rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
.++++.|+.|+..|+..||..|.. ++||+..+|.+||..+||++.+|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445667999999999999999999 999999999999999999999999999999999873
No 132
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.1e-14 Score=121.74 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=55.0
Q ss_pred ccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 704 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
..+|.+|+..||..|..++||+..++..||..+||++++|+|||||||+|+|++.+...
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 34899999999999999999999999999999999999999999999999999876554
No 133
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.42 E-value=7.5e-14 Score=134.25 Aligned_cols=61 Identities=33% Similarity=0.616 Sum_probs=58.5
Q ss_pred CCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 57 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
++++||.||.|+..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4577889999999999999999999999999999999999999999999999999999997
No 134
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.41 E-value=8.7e-14 Score=120.01 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=54.1
Q ss_pred CCCCccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhc
Q psy17256 61 KRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 119 (768)
Q Consensus 61 rr~Rt~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~ 119 (768)
++.|+.|+..|+..||..|.. ++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 344667999999999999999 99999999999999999999999999999999999864
No 135
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=3e-14 Score=116.68 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=56.0
Q ss_pred cccccccccHHHHHHHhhcc---ccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 699 AKRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 699 ~rr~Rt~~s~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
.++.|+.|+.+|+..|+..| ..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46788999999999999999 999999999999999999999999999999999999873
No 136
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=2.6e-14 Score=119.70 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=55.3
Q ss_pred ccccccccHHHHHHHhhcc-ccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 700 KRVRTTFTEEQLQVLQANF-QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F-~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
.+.|++++.+|+..||..| ..++||+..++..||.++||++++|+|||||||+|+|+....
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s 70 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPS 70 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCC
Confidence 3446667889999999999 999999999999999999999999999999999999986544
No 137
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.40 E-value=3.6e-14 Score=138.09 Aligned_cols=67 Identities=22% Similarity=0.437 Sum_probs=53.0
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
..++++|.||.|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+||+.+.+
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 3567788999999999999999999999999999999999999999999999999999999987654
No 138
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=8.4e-14 Score=123.09 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHh---------------------CCCCCccccccccchhHH
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT---------------------GLSKRVTQVWFQNSRARQ 754 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~l---------------------gls~~~V~vWFQNrRak~ 754 (768)
.++.+|.|+.|+..|+..||..|..++||+..+|++||..+ .+++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678899999999999999999999999999999999999 789999999999999999
Q ss_pred Hhhhhccc
Q psy17256 755 KKHLHTGK 762 (768)
Q Consensus 755 kk~~~~~~ 762 (768)
|++.+.+-
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 99876554
No 139
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.39 E-value=9.8e-14 Score=128.85 Aligned_cols=68 Identities=31% Similarity=0.800 Sum_probs=63.1
Q ss_pred hhhhccc--ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 611 CFRSFGA--KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 611 y~~~f~~--~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
|.++|++ +|.+|+++|.+.+.+|.|+++.||.+||+|..|+++|..|+.|+..++.+||+.||.++..
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc
Confidence 6789999 9999999999878899999999999999999999999778889999999999999987653
No 140
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.39 E-value=5.4e-14 Score=136.50 Aligned_cols=62 Identities=27% Similarity=0.514 Sum_probs=55.1
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
..+++|.||.|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999985
No 141
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=113.30 Aligned_cols=53 Identities=26% Similarity=0.490 Sum_probs=49.8
Q ss_pred ccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhh
Q psy17256 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~ 117 (768)
..++..|+..||..|..++||+..+|.+||..+||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34578999999999999999999999999999999999999999999998776
No 142
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.38 E-value=5.1e-14 Score=116.63 Aligned_cols=59 Identities=19% Similarity=0.372 Sum_probs=54.7
Q ss_pred ccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 704 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
..+|..|+..||..|..++||+...+..||.++||++++|+|||||||+|+||++...+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999865543
No 143
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.38 E-value=4.8e-14 Score=125.20 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=54.9
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHH------------------hC---CCCCccccccccchhHH
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI------------------TG---LSKRVTQVWFQNSRARQ 754 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~------------------lg---ls~~~V~vWFQNrRak~ 754 (768)
.++.+|.|+.|+..|+..||..|..++||+...|++||.. +| |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4677889999999999999999999999999999999999 88 99999999999999999
Q ss_pred HhhhhccccCCC
Q psy17256 755 KKHLHTGKMKSS 766 (768)
Q Consensus 755 kk~~~~~~~~~s 766 (768)
|++.+.+....|
T Consensus 86 k~k~~~~~~~~s 97 (99)
T 1lfb_A 86 AFRHKLAMDTYK 97 (99)
T ss_dssp SCCC--------
T ss_pred HHhchhhhccCC
Confidence 988776655433
No 144
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.38 E-value=1e-13 Score=120.77 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=57.8
Q ss_pred ccccccccHHHHHHHhhcc---ccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhcc
Q psy17256 700 KRVRTTFTEEQLQVLQANF---QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~ 761 (768)
+|.|+.|+.+|+..|+..| ..++||+..++..||..+||++.+|++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6779999999999999999 8999999999999999999999999999999999999986544
No 145
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=118.10 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=60.8
Q ss_pred CccccccccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccccC
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMK 764 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~~~ 764 (768)
.++++.|+.|+.+|+..|+..|.. ++||+..++..||.++||++.||+|||||||+|+|+........
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~~~ 75 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRN 75 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCCCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhccC
Confidence 456778999999999999999877 69999999999999999999999999999999999986655443
No 146
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.38 E-value=7.8e-14 Score=112.69 Aligned_cols=55 Identities=27% Similarity=0.455 Sum_probs=53.3
Q ss_pred cccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 703 RTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 703 Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
|+.|+.+|+..|+..|.. ++||+..++..||.++||++.+|++||||||+|+||.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 688999999999999999 9999999999999999999999999999999999985
No 147
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.37 E-value=6.7e-14 Score=133.67 Aligned_cols=62 Identities=32% Similarity=0.557 Sum_probs=55.8
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
.++++|.||.|+.+|+..||..|..++||+..++..||..+||++++|+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45678889999999999999999999999999999999999999999999999999999985
No 148
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=1e-13 Score=112.50 Aligned_cols=50 Identities=24% Similarity=0.482 Sum_probs=46.6
Q ss_pred HHHHHHHHHhh-hhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhh
Q psy17256 69 EEQLQVLQANF-QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118 (768)
Q Consensus 69 ~~Ql~~Le~~F-~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~ 118 (768)
..|+.+||+.| ..++||+...|.+||.++||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 35799999999 679999999999999999999999999999999999863
No 149
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.37 E-value=9.5e-14 Score=112.43 Aligned_cols=51 Identities=31% Similarity=0.597 Sum_probs=49.2
Q ss_pred cHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 707 TEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 707 s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
+.+|+..||..|..++||+..++.+||..+||++++|++||||||+|||+-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 578999999999999999999999999999999999999999999999974
No 150
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=1.5e-13 Score=117.79 Aligned_cols=69 Identities=23% Similarity=0.520 Sum_probs=61.1
Q ss_pred cchhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEee-cCccccccccccccc
Q psy17256 606 LSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALH-EDRVLCKSHYLELVD 678 (768)
Q Consensus 606 yC~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~-~g~~~C~~~y~e~~~ 678 (768)
||+.||. +++++|.+|+++|.+ .+|.|+++.||++||+|..|+++| .+..|... ++++||+.||.++..
T Consensus 6 yC~~~y~-~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 6 SGEGCYV-ATLEKCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CCCCCCC-SSCCBCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBC-TTSCEECCTTCCCEEHHHHHHHTT
T ss_pred ECHHHhh-cCCCccccCCCeecc--eeEEECCccccHHhcCcccCCCcc-CCCeeEECCCCEEECHHHHHHHhc
Confidence 5568998 799999999999994 489999999999999999999999 57778876 689999999987664
No 151
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=8.4e-14 Score=129.12 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=84.9
Q ss_pred ccchhhhhhhhhhHH-HHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIALVL-SEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~-~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.+.|..|.++|.+.. +.+.++ .||+.||+|+.|+..+. |....++.+++.+| |.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~---------------~~~~~~~~~~g~~y----C~ 59 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDS------YWHSRCLKCSSCQAQLG---------------DIGTSSYTKSGMIL----CR 59 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTE------EECHHHHCCSSSCCCTT---------------TSEECCEEETTEEE----CH
T ss_pred CCCCcccCCEeCCcEEEEECCc------eeHhhCCCcCCCCCccc---------------ccCCeEEEECCeee----cH
Confidence 355999999999874 667777 99999999999995432 11124678888994 56
Q ss_pred hhhhhhccc--ccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 609 LICFRSFGA--KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 609 ~~y~~~f~~--~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.||.++|++ +|++|+++|.+++ +.+.++ ++..|+.|+++++++||..||.+...
T Consensus 60 ~cy~~~f~~~~~C~~C~~~I~~~~--~~~~g~--------------~~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 60 NDYIRLFGNSGAGGSGGHMGSGGD--VMVVGE--------------PTLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp HHHHHHHCCCCSSSCSSCCSCCEE--SSSSSS--------------SSCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred HHHHHHcCCCCccccCCCCcCchh--eEEcCC--------------cCCCCCccEecCCEeEccCcchhchh
Confidence 999999999 9999999999763 344442 23479999999999999999987654
No 152
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.34 E-value=2.3e-13 Score=132.75 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=55.0
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
...+.||.||.||..|+..||..|+.++||+..+|++||..+||++.+|+|||||||+|+|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345678899999999999999999999999999999999999999999999999999999986543
No 153
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.33 E-value=2.3e-13 Score=118.45 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=55.8
Q ss_pred CccccccccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
.++++.|+.|+.+|+..|+..|.. ++||+..++..||..+||++.+|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345566899999999999999999 999999999999999999999999999999999873
No 154
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.33 E-value=2.4e-13 Score=117.28 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=55.2
Q ss_pred ccccccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 700 KRVRTTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 700 rr~Rt~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
++.|+.|+.+|+..|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 344667999999999999999 9999999999999999999999999999999999997543
No 155
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.32 E-value=3.6e-13 Score=129.46 Aligned_cols=61 Identities=33% Similarity=0.616 Sum_probs=58.2
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHh
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk 756 (768)
.++++|.|+.|+..|+..||..|..++||+..++..||.++||++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567888999999999999999999999999999999999999999999999999999987
No 156
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=9.3e-13 Score=110.71 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=58.0
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.+|+++|++|+++|.+. ++.|+++.||++||+|..|+++|..|..|++.++++||..||..+..
T Consensus 2 s~~~~~C~~C~~~I~~~--~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR--VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CCSCCSCSSSCCCCSSC--CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCcCCcccCCCEecCe--eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 36889999999999964 88999999999999999999999668899999999999999987654
No 157
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.31 E-value=1.9e-13 Score=110.91 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=46.7
Q ss_pred HHHHHHhhcc-ccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhh
Q psy17256 709 EQLQVLQANF-QLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHL 758 (768)
Q Consensus 709 ~Ql~~Le~~F-~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~ 758 (768)
.|+..||..| ..++||+...+..||.++||+++||+|||||||+|+|+..
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 4799999999 6799999999999999999999999999999999999754
No 158
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=2e-12 Score=109.49 Aligned_cols=66 Identities=21% Similarity=0.476 Sum_probs=59.3
Q ss_pred hhcccccccCCCCCCC--CcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 613 RSFGAKCSKCCRGIAS--SDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~--~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
++|+++|.+|+++|.+ .+.++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++...
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f~~ 69 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSGMDTD 69 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBC-SSSCEEEETTEEEETTTTCCCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcC-CCCceEeECCEEECHHHhhhhhCC
Confidence 4689999999999996 45689999999999999999999999 578899999999999999887653
No 159
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.6e-13 Score=110.08 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=49.9
Q ss_pred ccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 704 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
...+.+|+..||..|..++||+..++..||.++||++++|+|||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 345689999999999999999999999999999999999999999999997763
No 160
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.30 E-value=6.4e-13 Score=128.20 Aligned_cols=61 Identities=33% Similarity=0.500 Sum_probs=57.5
Q ss_pred CccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhh
Q psy17256 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757 (768)
Q Consensus 697 ~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~ 757 (768)
++++|.|+.|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999984
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.29 E-value=4.8e-13 Score=111.62 Aligned_cols=66 Identities=29% Similarity=0.622 Sum_probs=59.1
Q ss_pred hhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccc
Q psy17256 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELV 677 (768)
Q Consensus 611 y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~ 677 (768)
|...++++|.+|+++|.+.|.++.|.++.||.+||+|..|+++|..+ .|+..+|++||+.||.++.
T Consensus 6 y~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHT
T ss_pred ccCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhh
Confidence 34588999999999999888889999999999999999999999655 7889999999999997654
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1e-12 Score=109.94 Aligned_cols=65 Identities=29% Similarity=0.659 Sum_probs=59.4
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
.++++|.+|+++|.+.+.++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHHcc
Confidence 47889999999999877789999999999999999999999 688899999999999999887753
No 163
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.29 E-value=1.4e-12 Score=109.06 Aligned_cols=65 Identities=18% Similarity=0.497 Sum_probs=58.9
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
++|+++|.+|+++|.+.+.+|.|+++.||.+||+|..|+++|. +..|+.+++++||+.||.++..
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC-SSSEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC-CCccCccCCeEECHHHHhHHhC
Confidence 4688999999999998778999999999999999999999995 4579999999999999987765
No 164
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=2e-12 Score=108.12 Aligned_cols=65 Identities=20% Similarity=0.448 Sum_probs=58.7
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
++|+++|.+|+++|.+.+.++.|+++.||.+||+|..|+++| .+..|+..++.+||+.||.++..
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBT-TTSCEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcC-CCCccCCcCCeEECHHHHHHHcc
Confidence 468899999999999766799999999999999999999999 45679999999999999987765
No 165
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.25 E-value=1.3e-12 Score=129.66 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=53.9
Q ss_pred CCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcC---------------------CCcccccccccccHHH
Q psy17256 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------------LSKRVTQVWFQNSRAR 114 (768)
Q Consensus 56 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~vqvWFqNrRak 114 (768)
..++.||.|+.|+..|+.+||+.|+.++||+...|++||..++ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4567889999999999999999999999999999999999999 9999999999999998
Q ss_pred Hhh
Q psy17256 115 QKK 117 (768)
Q Consensus 115 ~k~ 117 (768)
++.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=3.3e-12 Score=106.86 Aligned_cols=64 Identities=23% Similarity=0.522 Sum_probs=57.8
Q ss_pred hcccccccCCCCCCC--CcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIAS--SDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~--~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++++|.+|+++|.+ .+.++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKDISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC-TTSCCEECSSSEECHHHHHTCCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC-CCCccEeECCEEEChhHcCcccC
Confidence 577899999999997 55789999999999999999999999 57889999999999999987664
No 167
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.23 E-value=1.1e-12 Score=127.83 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhccc
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~~~ 762 (768)
..+.+|.|+.|+..|+..|+..|..++||+...+..||..+||++.+|+|||||||+|+|+....+.
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~~~ 160 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHH 160 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-----
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCCCC
Confidence 3556888999999999999999999999999999999999999999999999999999999766554
No 168
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=3.5e-12 Score=105.29 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHhhh---hCCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhccc
Q psy17256 66 TFTEEQLQVLQANFQ---LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 121 (768)
Q Consensus 66 ~~t~~Ql~~Le~~F~---~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~~ 121 (768)
.|+.+|+..|+..|. .++||+..+|++||..+||++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 599999999999999 99999999999999999999999999999999999986543
No 169
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.21 E-value=2.7e-12 Score=105.52 Aligned_cols=63 Identities=24% Similarity=0.501 Sum_probs=56.1
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
++|+++|.+|+++|.+ .++.|+++.||.+||+|..|+++| .+..|+..++.+||+.||.++..
T Consensus 2 ~~~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 2 SMGVPICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCCCEETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBC-SSSCCEEETTEEECHHHHHHHCS
T ss_pred CcCCCCCcccCCEecc--eEEEECccccccCcCEECCCCCCC-CCCceEeECCcEECHHHHHHHhC
Confidence 3678999999999994 378999999999999999999999 56789999999999999987654
No 170
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.20 E-value=4.2e-12 Score=104.11 Aligned_cols=61 Identities=23% Similarity=0.518 Sum_probs=54.2
Q ss_pred cccccccCCCCCCCCcceeeecCceec--ccCccccccccccCCCCceEeecCcccc-ccccccc
Q psy17256 615 FGAKCSKCCRGIASSDWVRKARDHVYH--LACFACEACKRQLSTGEEFALHEDRVLC-KSHYLEL 676 (768)
Q Consensus 615 f~~~C~~C~~~I~~~e~~~~a~~~~~H--~~CF~C~~C~~~L~~G~~f~~~~g~~~C-~~~y~e~ 676 (768)
|+++|.+|+++|.+++.+|.|+++.|| .+||+|..|+++| .|..|+.++|++|| ..||..+
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhhh
Confidence 688999999999976678999999999 9999999999999 67889999999999 7777543
No 171
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=2.4e-12 Score=117.87 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=80.5
Q ss_pred ccchhhhhhhhhhH-HHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIALV-LSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~~-~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.+.|..|.++|.+. .+.+.++ .||+.||+|+.|+..+.. . | ..+|.+++.+ ||.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~------~wH~~CF~C~~C~~~L~~-~-------------g-~~~~~~~g~~----yC~ 57 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQ------YWHEDCLSCDLCGCRLGE-V-------------G-RRLYYKLGRK----LCR 57 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSS------EECTTTCCCSSSCSCCCC-S-------------S-SCCCCBTTBC----CCH
T ss_pred CCCCcCCCCeeCCcEEEEECch------hHHHhcCcccccCCchhc-C-------------C-CeeEEECCee----ech
Confidence 35699999999988 5677787 999999999999954320 0 1 1457788888 556
Q ss_pred hhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 609 LICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.||.++|+++|..|.. + .+|. |..++..|+.|.++++++||..||.+...
T Consensus 58 ~~y~~~f~~~c~~c~~---~--~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 58 RDYLRLGGSGGHMGSG---G--DVMV---------------VGEPTLMGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp HHHHHHHTSCCSSCBS---C--SCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTTCCC
T ss_pred HHHHHHhCcccCcCCC---C--ceeE---------------cCCccCCCCeeEEcCCEeecchhhhcccc
Confidence 9999999999998862 1 2332 45666689999999999999999987654
No 172
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=7.9e-12 Score=103.86 Aligned_cols=62 Identities=29% Similarity=0.691 Sum_probs=56.2
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.|+++|.+|+++|.+. .+.|+++.||++||+|..|+++| .+..|+.+++++||+.||.++..
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG--GVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp CCCCBCSSSCCBCCSS--EEESSSSEEETTTSBCSSSCCBC-TTSCCEESSSSEECHHHHHHHTC
T ss_pred CCCCCCcccCCeeccc--eEEECccccCCCCCccCCCCCcC-CcCceEeeCCeEECHHHHHHHhc
Confidence 5788999999999865 68999999999999999999999 57789999999999999987765
No 173
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=7.9e-12 Score=109.35 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=60.3
Q ss_pred hhhhhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 608 VLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 608 ~~~y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
+..+...++++|.+|+++|.+ .++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++..
T Consensus 17 ~~~~~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 17 EHIPAGKRTPMCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp EEECTTTCCCBBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBC-SSSCBEESSSCEECHHHHHHHTS
T ss_pred ccCCCCCCCCCCccCCCEecc--eEEEECCccccccCCccCCCCCCC-CCCEeEeECCEEECHHHHHHHcC
Confidence 355778899999999999974 478899999999999999999999 46679999999999999988765
No 174
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=5.2e-12 Score=107.00 Aligned_cols=65 Identities=28% Similarity=0.628 Sum_probs=58.0
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
..++++|.+|+++|.+.+.++.|+++.||.+||+|..|+++|..+ .|+..+|++||+.||.++.+
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEEETTEEECHHHHHHHCC
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEeECCeEeCHHHHHHHhh
Confidence 456789999999999778899999999999999999999999544 68999999999999987654
No 175
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=4.9e-12 Score=104.40 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=50.6
Q ss_pred ccccHHHHHHHhhccc---cCCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 704 TTFTEEQLQVLQANFQ---LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~---~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
..|+.+|+..|+..|. .++||+..++..||..+||++.||++||||||+|+||....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3689999999999999 99999999999999999999999999999999999987544
No 176
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.17 E-value=8.6e-12 Score=103.39 Aligned_cols=62 Identities=32% Similarity=0.700 Sum_probs=56.0
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++++|.+|+++|.+. ++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++..
T Consensus 3 ~~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG--GITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCCTT--CEEETTEEECTTTTBCTTTCCBC-TTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeCcc--eEEECccccccCcCEECCCCCCC-CCCccEeECCEEECHHHhHHHhc
Confidence 5788999999999864 78899999999999999999999 57789999999999999987654
No 177
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.15 E-value=1.3e-11 Score=102.58 Aligned_cols=62 Identities=26% Similarity=0.492 Sum_probs=54.7
Q ss_pred cccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 615 FGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 615 f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
++++|.+|+++|.+ .++.|+++.||++||+|..|+++|.. ..|+.+++++||+.||.+....
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~-~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLAD-IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSS-SCCEEETTEEECHHHHHHHHCC
T ss_pred CCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCC-CccEeECCeEECHHHhhhhcCC
Confidence 56799999999995 47999999999999999999999954 4688899999999999877653
No 178
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.11 E-value=2.9e-11 Score=102.22 Aligned_cols=66 Identities=24% Similarity=0.526 Sum_probs=57.5
Q ss_pred hhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccc-cccccccc
Q psy17256 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCK-SHYLELVD 678 (768)
Q Consensus 611 y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~-~~y~e~~~ 678 (768)
.+..++++|.+|+++|.+++. +.|+++.||.+||+|..|+++| .+..|+.+++++||+ .||.++..
T Consensus 4 ~~~~~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f~ 70 (76)
T 2cu8_A 4 GSSGMASKCPKCDKTVYFAEK-VSSLGKDWHKFCLKCERCSKTL-TPGGHAEHDGKPFCHKPCYATLFG 70 (76)
T ss_dssp SCCCCCCBCTTTCCBCCTTTE-EEETTEEEETTTCBCSSSCCBC-CTTSCEEETTEEECTTTHHHHHSC
T ss_pred ccCCCCCCCcCCCCEeECCeE-EEECCeEeeCCCCCCCCCCCcc-CCCceEeECCEEecchHHHHHhcc
Confidence 456788999999999996654 6799999999999999999999 466799999999999 79987664
No 179
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.10 E-value=2e-11 Score=122.30 Aligned_cols=62 Identities=19% Similarity=0.379 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcC---------------------CCcccccccccccH
Q psy17256 54 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------------LSKRVTQVWFQNSR 112 (768)
Q Consensus 54 ~~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~---------------------l~~~~vqvWFqNrR 112 (768)
.+..++.||.|+.|++.|+.+||+.|+.++||+..+|++||..+| |++.+|++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345677899999999999999999999999999999999999987 89999999999999
Q ss_pred HHH
Q psy17256 113 ARQ 115 (768)
Q Consensus 113 ak~ 115 (768)
+..
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 853
No 180
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.09 E-value=2e-11 Score=108.92 Aligned_cols=64 Identities=22% Similarity=0.527 Sum_probs=57.5
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++++|.+|+++|.+.+.++.|+++.||.+||+|..|+++| .+..|+..++++||+.||.++..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~ 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTREDS 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTCCC
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhhcC
Confidence 56789999999998655689999999999999999999999 67789999999999999987654
No 181
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.09 E-value=3.6e-11 Score=102.57 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=53.8
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
..++++|.+|+++|.+ .+|.|+++.||++||+|..|+++|. +..| .+++++||+.||.++..
T Consensus 12 ~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 12 GLGKYICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKELT-ADAR-ELKGELYCLPCHDKMGV 73 (79)
T ss_dssp CCCCCBCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBCC-TTCE-EETTEEECHHHHHTTSC
T ss_pred ccCCCCCccCCCEecc--eEEEECcceeCCCCCEeCCCCCccC-CCCE-eECCEEeCHHHHHHhCC
Confidence 4567899999999994 4789999999999999999999995 4444 88999999999987765
No 182
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=7.4e-11 Score=101.35 Aligned_cols=62 Identities=21% Similarity=0.548 Sum_probs=52.0
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceE--eecCcccccccccccccC
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFA--LHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~--~~~g~~~C~~~y~e~~~~ 679 (768)
+.+|.+|+++|...+.+ .|+++.||.+||+|..|+++|.. ..|. .+++++||+.||.++..+
T Consensus 15 ~~~C~~C~~~I~~~e~v-~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 15 GDLCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWP-GGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SCBCSSSCCBCCTTTBC-CBTTBCCBTTTCBCSSSCCBCCT-TSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCcccCCCcccceEE-EECCCeeCCCcCEEcCCCCCcCC-CceeEeCcCCEEEChHHHHhhhcC
Confidence 46899999999876665 59999999999999999999954 4465 468999999999887653
No 183
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=4.2e-11 Score=97.32 Aligned_cols=47 Identities=23% Similarity=0.619 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHH
Q psy17256 69 EEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115 (768)
Q Consensus 69 ~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~ 115 (768)
.+|+..|+.+|..|++|+..++..||..+||+.++|||||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999853
No 184
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.05 E-value=4.4e-11 Score=110.90 Aligned_cols=64 Identities=27% Similarity=0.587 Sum_probs=56.4
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccC-CCCceEeecCcccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYLELV 677 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~-~G~~f~~~~g~~~C~~~y~e~~ 677 (768)
..++++|.+|+++|.+. .++.|+++.||.+||+|..|+++|. .|..|+.+++++||+.||.+++
T Consensus 58 ~~~~~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp CSSCSBBSSSSSBCCSS-SEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred CccCCcCcCCCCCcCCc-EEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 46678999999999964 4588999999999999999999996 3678999999999999998754
No 185
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.04 E-value=2.8e-11 Score=103.20 Aligned_cols=60 Identities=32% Similarity=0.620 Sum_probs=54.1
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++|.+|+++|.+. ++.|+++.||.+||+|..|+++| .+..|+.+++++||+.||.++..
T Consensus 15 ~~~C~~C~~~I~~~--~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--FVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCSSSCCCCCSS--CEECSSCEECTTTTSCSSSCCCH-HHHCCEESSSCEECHHHHHHHHS
T ss_pred CCccccCCCCccCc--EEEECcceeCcCcCeeCCCCCCC-CCCCeEeECCEEECHHHHHHHhC
Confidence 57999999999964 89999999999999999999999 56678999999999999987765
No 186
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=7.2e-11 Score=103.00 Aligned_cols=61 Identities=31% Similarity=0.592 Sum_probs=54.0
Q ss_pred cccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 615 FGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 615 f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
...+|.+|+++|.+ .+|.|+++.||.+||+|..|+++|. +..|+.+++++||+.||.++..
T Consensus 24 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp SCCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTT-TSCCEEETTEEECHHHHHHHSS
T ss_pred cCCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCC-CCCeEeECCEEECHHHHHHHhC
Confidence 45799999999996 4799999999999999999999994 5568889999999999987765
No 187
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.4e-10 Score=99.17 Aligned_cols=61 Identities=26% Similarity=0.621 Sum_probs=53.4
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
.++|.+|+++|..++ ++.|+++.||.+||+|..|+++|. + .|+.+++++||+.||.++...
T Consensus 15 ~~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~~~g~~yC~~~y~~~fg~ 75 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ-SLLALDKQWHVSCFKCQTCSVILT-G-EYISKDGVPYCESDYHAQFGS 75 (80)
T ss_dssp CSCCTTTCCCCSSSC-CEEETTEEECTTTCBCSSSCCBCS-S-CCEEETTEEECTTHHHHHTTC
T ss_pred CCCCcCcCCeeCCCe-EEEECCcccccccCCcCcCCCCcC-C-CeEEECCEEECHHHHHHHcCC
Confidence 468999999998654 577999999999999999999994 5 599999999999999887653
No 188
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.01 E-value=5.8e-11 Score=110.38 Aligned_cols=95 Identities=19% Similarity=0.357 Sum_probs=71.4
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccCCcccCCCCCCcccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDGGTTSSDDGADSESS 693 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~~~~s~~~g~~~~~~ 693 (768)
.|+++|.+|+++|..++ ++.|+|+.||++||+|..|+++| .+..|+.++|++||+.||.++...
T Consensus 1 ~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~~~~-------------- 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKNHAV-------------- 64 (126)
T ss_dssp -CCCBBTTTSSBCCSSC-EEEETTEEECGGGSBCTTTCCBC-TTSEEEEETTEEEEHHHHHHHSCC--------------
T ss_pred CcCCCCccCCCEeCCce-EEeeCCCCccCCCCCcCCCCCCC-CcCEEEeECCEEechHHhCcCcCc--------------
Confidence 37899999999999653 68899999999999999999999 577899999999999999876542
Q ss_pred cCCCccccccccccH--HHHHHHhhccc--cCCCCCHHH
Q psy17256 694 HSKSKAKRVRTTFTE--EQLQVLQANFQ--LDSNPDGQD 728 (768)
Q Consensus 694 ~~~~k~rr~Rt~~s~--~Ql~~Le~~F~--~~~~p~~~~ 728 (768)
+..+....|.+ ..+..+...|+ ...|-....
T Consensus 65 ----~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C 99 (126)
T 2xqn_T 65 ----VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCC 99 (126)
T ss_dssp ----BCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTT
T ss_pred ----cCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCC
Confidence 23333334442 22445566677 666655443
No 189
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.00 E-value=9.6e-11 Score=100.26 Aligned_cols=63 Identities=29% Similarity=0.659 Sum_probs=53.5
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++++|.+|+++|.+++ ++.|.++.||.+||+|..|+++|. +..|+.+++++||+.||.++..
T Consensus 5 ~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp ---CBCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEEC-SSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCcCcCcCccccCce-eEEeCCcccccccCccCCCCCCCC-CCCeEeeCCEEECHHHHHHHhC
Confidence 34679999999998655 578999999999999999999994 5579999999999999987765
No 190
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=7e-11 Score=96.06 Aligned_cols=46 Identities=22% Similarity=0.613 Sum_probs=44.1
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhH
Q psy17256 708 EEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRAR 753 (768)
Q Consensus 708 ~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak 753 (768)
.+|+..|+.+|..+++|+..++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999985
No 191
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.99 E-value=2.9e-11 Score=120.04 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=53.8
Q ss_pred CCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhC---------------------CCCCccccccccchhHH
Q psy17256 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------------LSKRVTQVWFQNSRARQ 754 (768)
Q Consensus 696 ~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------------ls~~~V~vWFQNrRak~ 754 (768)
.++.+|.|+.|+..|+..|++.|..++||+...|+.||..++ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 467789999999999999999999999999999999999999 99999999999999997
Q ss_pred Hh
Q psy17256 755 KK 756 (768)
Q Consensus 755 kk 756 (768)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 192
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.98 E-value=1.1e-10 Score=102.18 Aligned_cols=67 Identities=27% Similarity=0.648 Sum_probs=57.2
Q ss_pred hhhhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCcccccccccccccC
Q psy17256 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 611 y~~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
|...++.+|.+|+++|.+.+. +.|+++.||.+||+|..|+++|..+ .|+..++++||+.||.++...
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 10 FQAPARETCVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSLG-TYASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp SCSSSSCBCTTTCCBCCTTSE-EECSSSEEETTTCBCTTTCCBCCTT-TCCCSSSCCCCHHHHHHHSCC
T ss_pred cCCCCCCcCccCCCccCCcee-EEECCCEECCCCCeeCCCCCCCCCC-CcEeECCEEECHHHHHHHhCC
Confidence 444567899999999997654 6899999999999999999999544 588999999999999887764
No 193
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=2.3e-10 Score=96.57 Aligned_cols=60 Identities=25% Similarity=0.595 Sum_probs=52.5
Q ss_pred cccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccc-cccccccc
Q psy17256 617 AKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCK-SHYLELVD 678 (768)
Q Consensus 617 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~-~~y~e~~~ 678 (768)
++|.+|+++|..++ .+.|+++.||.+||+|..|+++|. +..|+.+++++||+ .||.++..
T Consensus 1 p~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAE-RVTSLGKDWHRPCLKCEKCGKTLT-SGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGG-EEEETTEEEETTTCBCTTTCCBCC-TTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECce-EEEECCccccCCCCCccccCccCC-CCceECcCCeEeeCHHHHHHHhC
Confidence 58999999999654 478999999999999999999995 44799999999999 69987765
No 194
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.91 E-value=4e-10 Score=97.09 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=51.8
Q ss_pred ccCCHHHHHHHHHhhhh---CCCCCHHHHHHHHHHcCCCcccccccccccHHHHhhhcc
Q psy17256 65 TTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120 (768)
Q Consensus 65 t~~t~~Ql~~Le~~F~~---~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k~~~~ 120 (768)
..|+..++..|+..|.. ++||+..+|++||..+||++.||++||||+|+|+++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999987 999999999999999999999999999999999987643
No 195
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.89 E-value=4.3e-10 Score=102.73 Aligned_cols=63 Identities=29% Similarity=0.633 Sum_probs=55.5
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCC-CCceEeecCcccccccccccccC
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLST-GEEFALHEDRVLCKSHYLELVDG 679 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~g~~~C~~~y~e~~~~ 679 (768)
.++|.+|+++|.+. .++.|+++.||.+||+|..|+++|.. |..|+.+++++||+.||.++...
T Consensus 3 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp CBCBSSSCSCBCSS-EEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred CCCCcCCCCeeCCc-EEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 36899999999954 47889999999999999999999963 67899999999999999887654
No 196
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.87 E-value=3.6e-10 Score=97.44 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=52.4
Q ss_pred ccccHHHHHHHhhcccc---CCCCCHHHHHHHHHHhCCCCCccccccccchhHHHhhhhc
Q psy17256 704 TTFTEEQLQVLQANFQL---DSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHT 760 (768)
Q Consensus 704 t~~s~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~kk~~~~ 760 (768)
..|+.+++..|+..|.. ++||+..++..||.++||++.||++||||+|+|+++....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 46788999999999977 9999999999999999999999999999999999987543
No 197
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=2.6e-10 Score=105.47 Aligned_cols=64 Identities=27% Similarity=0.593 Sum_probs=56.4
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccC-CCCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~-~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++++|++|+++|.+. .++.|+++.||++||+|..|+.+|. .|..|+.+++++||+.||.++..
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~ 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67 (122)
T ss_dssp SCCCCBSSSSSCCCSS-CCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC
T ss_pred CCCCCCcccCCEeCCc-EEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC
Confidence 4678999999999975 3578999999999999999999995 25779999999999999988765
No 198
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.84 E-value=4.5e-10 Score=112.55 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=53.3
Q ss_pred CCCccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhC---------------------CCCCccccccccchhH
Q psy17256 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITG---------------------LSKRVTQVWFQNSRAR 753 (768)
Q Consensus 695 ~~~k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------------ls~~~V~vWFQNrRak 753 (768)
..++.+|.|+.|+..|+..|+..|..++||+..+|+.||..++ |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4577899999999999999999999999999999999999987 7899999999999986
Q ss_pred H
Q psy17256 754 Q 754 (768)
Q Consensus 754 ~ 754 (768)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 199
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.75 E-value=9.6e-10 Score=122.15 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=53.8
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHHHHh
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRak~k 116 (768)
.++.|+.|+..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456688999999999999999999999999999999999999999999999999876
No 200
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.73 E-value=3.9e-09 Score=98.62 Aligned_cols=61 Identities=30% Similarity=0.694 Sum_probs=54.2
Q ss_pred cccccCCCCCCCCcceeeecCceecccCccccccccccCC-CCceEeecCccccccccccccc
Q psy17256 617 AKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLST-GEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 617 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
++|++|+++|.+. .++.|+++.||++||+|..|+.+|.. |..|+.++|++||+.||.++..
T Consensus 3 ~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 64 (131)
T 2xjy_A 3 LTCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64 (131)
T ss_dssp CBBTTTCCBCCSS-EEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC
T ss_pred ccCcCCCCEeCCc-EEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC
Confidence 6899999999964 36889999999999999999999963 6789999999999999988764
No 201
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=98.69 E-value=3.5e-09 Score=105.38 Aligned_cols=64 Identities=27% Similarity=0.596 Sum_probs=56.1
Q ss_pred hcccccccCCCCCCCCcceeeecCceecccCccccccccccCC-CCceEeecCccccccccccccc
Q psy17256 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLST-GEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 614 ~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~-G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
++.++|++|+++|.+. .++.|+++.||.+||+|..|+.+|.. |..|+.+++++||+.||.++..
T Consensus 3 l~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~ 67 (188)
T 1rut_X 3 LSWKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 67 (188)
T ss_dssp -CCCBBTTTCCBCCCS-EEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS
T ss_pred CCCCcCccCCCEeCCc-eeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc
Confidence 4678999999999964 46889999999999999999999965 6789999999999999987654
No 202
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.66 E-value=5.1e-09 Score=103.60 Aligned_cols=63 Identities=24% Similarity=0.536 Sum_probs=53.5
Q ss_pred hhcccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 613 ~~f~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
....++|.+|+++|... .++.|+++.||.+||+|..|+++|. +..| .++|++||+.||.++..
T Consensus 57 ~~~~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~ 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFG 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCS-EEEEETTEEECSSTTSCTTTCCCCS-SCCE-EETTEEECHHHHHHTTS
T ss_pred CCCCCcCccCCCCccCc-eeEEecCCeEccccCccCCCCCccC-CCce-eECCEeeecCccccccc
Confidence 45567999999999964 4678999999999999999999994 4445 68999999999987764
No 203
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=4e-09 Score=88.97 Aligned_cols=70 Identities=11% Similarity=-0.092 Sum_probs=55.7
Q ss_pred cchhhhhhhhh-hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch-
Q psy17256 531 LEFHSFLKRIA-LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV- 608 (768)
Q Consensus 531 ~~C~~c~k~Ia-~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~- 608 (768)
|.|..|.++|. +..+.+.++ .||+.||.|+.|+..+. + ..++.+++.+ ||.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~g~~----yC~~ 53 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGK------DWHRPCLKCEKCGKTLT---------------S--GGHAEHEGKP----YCNH 53 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTE------EEETTTCBCTTTCCBCC---------------T--TTEEEETTEE----EETT
T ss_pred CcCCCCCCEEECceEEEECCc------cccCCCCCccccCccCC---------------C--CceECcCCeE----eeCH
Confidence 45899999997 666677777 99999999999995433 1 2357788888 456
Q ss_pred hhhhhhcccccccCCCCCC
Q psy17256 609 LICFRSFGAKCSKCCRGIA 627 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I~ 627 (768)
.||.++|+++|.+|++++.
T Consensus 54 ~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 54 PCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp THHHHHSSCCCSSCCCSSS
T ss_pred HHHHHHhCccCCCcCCcee
Confidence 5999999999999997664
No 204
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.62 E-value=3.5e-09 Score=117.64 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=54.5
Q ss_pred ccccccccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccccchhHHH
Q psy17256 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 755 (768)
Q Consensus 698 k~rr~Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQNrRak~k 755 (768)
..++.++.++..|+..|++.|+.++||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 364 ~~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 364 AQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3466788999999999999999999999999999999999999999999999999976
No 205
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.57 E-value=5.8e-09 Score=89.06 Aligned_cols=70 Identities=9% Similarity=-0.099 Sum_probs=46.2
Q ss_pred ccchhhhhhhhh-hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIA-LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia-~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
++.|..|.+.|. ...+.+.++ .||+.||+|+.|+..+.. ..++.+++.+|| .
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~------~~H~~CF~C~~C~~~L~~-----------------~~~~~~~~~~yC----~ 59 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGR------SFHRCCFLCMVCRKNLDS-----------------TTVAIHDAEVYC----K 59 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTE------EEESSSEECSSSCCEECS-----------------SCCEEETTEEEC----S
T ss_pred CCcCcCcCccccCceeEEeCCc------ccccccCccCCCCCCCCC-----------------CCeEeeCCEEEC----H
Confidence 456999999995 555667777 999999999999954331 235777888854 5
Q ss_pred hhhhhhcccccccCCCCC
Q psy17256 609 LICFRSFGAKCSKCCRGI 626 (768)
Q Consensus 609 ~~y~~~f~~~C~~C~~~I 626 (768)
.||.++|+++|.+|++..
T Consensus 60 ~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 60 SCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp HHHHHHCC----------
T ss_pred HHHHHHhCCcccccCCcc
Confidence 899999999999999765
No 206
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=98.54 E-value=1.9e-08 Score=100.36 Aligned_cols=61 Identities=30% Similarity=0.675 Sum_probs=53.3
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
+++|.+|+++|..++. +.|+++.||.+||+|..|+++|. +..|+.+++++||+.||.++..
T Consensus 7 ~~~C~~C~~~I~~~~~-v~a~g~~wH~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEE-VQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp CEECTTTCCEECSSCC-EEETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHHS
T ss_pred CCcCccCCCeecceeE-EEeCCceecCCCCcCcccCCcCC-CCeeEecCCEeeChhhhHhhcC
Confidence 4699999999986654 57999999999999999999994 4569999999999999987754
No 207
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.52 E-value=2.8e-08 Score=97.12 Aligned_cols=60 Identities=25% Similarity=0.583 Sum_probs=50.9
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCccccccccccCCCCceEeecCccccccccccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~G~~f~~~~g~~~C~~~y~e~~~ 678 (768)
.++|.+|+++|.+. .++.|+|+.||.+||+|..|+.+|. +..| .++|++||+.||.++..
T Consensus 6 ~~~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f-~~~g~~yC~~~y~~~f~ 65 (169)
T 2rgt_A 6 IPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPLA-ERCF-SRGESVYCKDDFFKRFG 65 (169)
T ss_dssp -CBBSSSSSBCCSS-SCEECSSCEECTTTSBCTTTCCBCC-SCCE-ESSSCEECHHHHHHHHS
T ss_pred CCccccCCCccCCc-EEEEECCcEEccccCccCCCCCcCC-CCCc-ccCCeeeeccccccccc
Confidence 47999999999864 4678999999999999999999994 4444 78999999999987654
No 208
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.50 E-value=1e-08 Score=86.45 Aligned_cols=69 Identities=6% Similarity=-0.164 Sum_probs=55.0
Q ss_pred cccchhhhhhhhhh----HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccc
Q psy17256 529 LHLEFHSFLKRIAL----VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKG 604 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~----~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~ 604 (768)
.++.|..|.++|.+ ..+.+.++ .||..||.|+.|+..+. + ..++.+++.+||
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~------~wH~~CF~C~~C~~~L~----------------~-~~f~~~~g~~yC- 59 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDS------QWHSECFNCGKCSVSLV----------------G-KGFLTQNKEIFC- 59 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTE------EEEGGGCBCTTTCCBCS----------------S-SCEEEETTEEEE-
T ss_pred cCCCCccCCCcccCCCCceeEEECCc------ccCcccCChhhCCCcCC----------------C-CceEeECCEEEC-
Confidence 35669999999997 67777787 99999999999985432 1 235778888854
Q ss_pred ccchhhhhhhcccccccCCC
Q psy17256 605 RLSVLICFRSFGAKCSKCCR 624 (768)
Q Consensus 605 ~yC~~~y~~~f~~~C~~C~~ 624 (768)
..||.++|+++|+.|.+
T Consensus 60 ---~~cy~~~f~~~C~~~sg 76 (76)
T 1x68_A 60 ---QKCGSGMDTDISGPSSG 76 (76)
T ss_dssp ---TTTTCCCCCCSSSSSCC
T ss_pred ---HHHhhhhhCCcCCCCCC
Confidence 58999999999998863
No 209
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.49 E-value=2.6e-08 Score=71.11 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.3
Q ss_pred CccccccccchhHHHhhhhccc
Q psy17256 741 RVTQVWFQNSRARQKKHLHTGK 762 (768)
Q Consensus 741 ~~V~vWFQNrRak~kk~~~~~~ 762 (768)
+||+||||||||||||++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999987643
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.47 E-value=1.5e-08 Score=86.15 Aligned_cols=77 Identities=6% Similarity=-0.147 Sum_probs=59.2
Q ss_pred cccccccccccccccccccccCCccccchhhhhhhhhhHHHHHhhcccccccccccceEEEecccccccccccccccccc
Q psy17256 505 LKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKP 584 (768)
Q Consensus 505 ~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~ 584 (768)
..|+..|+.. ..++.|..|.++|.+..+.+.++ .||..||+|+.|+..+.
T Consensus 3 ~~yC~~~y~~-------------~~~~~C~~C~~~I~~~~v~a~~~------~~H~~CF~C~~C~~~L~----------- 52 (80)
T 1x3h_A 3 SGSSGKDFLA-------------MFSPKCGGCNRPVLENYLSAMDT------VWHPECFVCGDCFTSFS----------- 52 (80)
T ss_dssp CCCCCCCCCC-------------CCSCBCTTTCCBCCSSCEEETTE------EECTTTCBCSSSCCBSC-----------
T ss_pred CccchhHHhh-------------hcCCccccCCCeecceeEEECCC------eEecCcCChhhCCCCCC-----------
Confidence 3566676654 23567999999999887777787 99999999999995433
Q ss_pred ccccCCCCcceeecccccccccchhhhhhhccccccc
Q psy17256 585 YGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSK 621 (768)
Q Consensus 585 ~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~ 621 (768)
+ ..++.+++.+| |..||.++|+++|++
T Consensus 53 ----~--~~~~~~~~~~y----C~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 53 ----T--GSFFELDGRPF----CELHYHHRRGSGPSS 79 (80)
T ss_dssp ----S--SCCEESSSCEE----CHHHHHHHHSSSCCC
T ss_pred ----C--CcEEeECCEEE----CHHHHHHHcCCCCCC
Confidence 1 23567788884 569999999999964
No 211
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.43 E-value=2e-08 Score=87.60 Aligned_cols=68 Identities=15% Similarity=-0.064 Sum_probs=54.0
Q ss_pred CccccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 527 GALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 527 G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
+..++.|..|.+.|.+..+.+.++ .||+.||.|+.|+..+. + ..++.+++.+|
T Consensus 22 ~~~~~~C~~C~~~I~~~~v~a~~~------~~H~~CF~C~~C~~~L~---~--------------~~f~~~~g~~y---- 74 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGPFLVALGK------SWHPEEFNCAHCKNTMA---Y--------------IGFVEEKGALY---- 74 (90)
T ss_dssp TTCCCBBSSSCCBCCSCEEEETTE------EECTTTCBCSSSCCBCS---S--------------SCBEESSSCEE----
T ss_pred CCCCCCCccCCCEecceEEEECCc------cccccCCccCCCCCCCC---C--------------CEeEeECCEEE----
Confidence 345667999999999888888887 99999999999995433 1 13567788884
Q ss_pred chhhhhhhccccccc
Q psy17256 607 SVLICFRSFGAKCSK 621 (768)
Q Consensus 607 C~~~y~~~f~~~C~~ 621 (768)
|..||.++|+++|+.
T Consensus 75 C~~cy~~~f~~~c~s 89 (90)
T 2dar_A 75 CELCYEKFFASGPSS 89 (90)
T ss_dssp CHHHHHHHTSCCCCC
T ss_pred CHHHHHHHcCCCCCC
Confidence 568999999999963
No 212
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.40 E-value=2e-08 Score=82.89 Aligned_cols=65 Identities=9% Similarity=-0.168 Sum_probs=52.0
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
++.|..|.+.|.+..+.+.++ .||+.||.|+.|+..+. | ..++.+++.+| |..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~--------------~~~~~~~~~~y----C~~ 57 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQ------PWHADCFVCVTCSKKLA---G--------------QRFTAVEDQYY----CVD 57 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTE------EECTTTTBCTTTCCBCT---T--------------SCEEECSSCEE----EHH
T ss_pred cCCCcccCCEeCcceEEECcc------ccccCcCEECCCCCCCC---C--------------CccEeECCEEE----CHH
Confidence 456999999998877777777 99999999999995432 1 23567778884 569
Q ss_pred hhhhhccccccc
Q psy17256 610 ICFRSFGAKCSK 621 (768)
Q Consensus 610 ~y~~~f~~~C~~ 621 (768)
||.++|+++|++
T Consensus 58 cy~~~f~~~C~g 69 (69)
T 2cur_A 58 CYKNFVSGPSSG 69 (69)
T ss_dssp HHHHHHTCSCCC
T ss_pred HhHHHhcCCCCC
Confidence 999999999975
No 213
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.40 E-value=3.4e-08 Score=83.15 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=52.9
Q ss_pred Cccccchhhhhhhhh-hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccc
Q psy17256 527 GALHLEFHSFLKRIA-LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGR 605 (768)
Q Consensus 527 G~~g~~C~~c~k~Ia-~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~ 605 (768)
.+.++.|..|.++|. ...+.+.++ .||+.||.|+.|+..+.. ..++.+++.+
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a~~~------~~H~~CF~C~~C~~~L~~-----------------~~~~~~~g~~---- 58 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSSLGK------DWHKFCLKCERCSKTLTP-----------------GGHAEHDGKP---- 58 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEETTE------EEETTTCBCSSSCCBCCT-----------------TSCEEETTEE----
T ss_pred CCCCCCCcCCCCEeECCeEEEECCe------EeeCCCCCCCCCCCccCC-----------------CceEeECCEE----
Confidence 345677999999998 556667777 999999999999954331 2356788888
Q ss_pred cch-hhhhhhccccccc
Q psy17256 606 LSV-LICFRSFGAKCSK 621 (768)
Q Consensus 606 yC~-~~y~~~f~~~C~~ 621 (768)
||. .||.++|+++|.+
T Consensus 59 yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 59 FCHKPCYATLFGSGPSS 75 (76)
T ss_dssp ECTTTHHHHHSCSSCSC
T ss_pred ecchHHHHHhcccccCC
Confidence 456 5999999999974
No 214
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.39 E-value=3e-08 Score=83.64 Aligned_cols=68 Identities=7% Similarity=-0.166 Sum_probs=52.2
Q ss_pred CCccccchhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccc
Q psy17256 526 DGALHLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLK 603 (768)
Q Consensus 526 ~G~~g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c 603 (768)
+++.++.|..|.+.|. +.++.+.++ .||..||.|+.|+..+.. +.++.+++.+|
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~~-----------------~~~~~~~g~~y- 62 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGE------LYHEQCFVCAQCFQQFPE-----------------GLFYEFEGRKY- 62 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTE------EECTTTCCCTTTCCCCGG-----------------GCSEEETTEEE-
T ss_pred cCCCCCCchhcCCccCCCceEEEeCcc------EeccccCeECCCCCCCCC-----------------CCeEeECCeEe-
Confidence 4455677999999995 666678887 999999999999955431 23577888884
Q ss_pred cccchhhhhhhcccccc
Q psy17256 604 GRLSVLICFRSFGAKCS 620 (768)
Q Consensus 604 ~~yC~~~y~~~f~~~C~ 620 (768)
|..||.++|+++|+
T Consensus 63 ---C~~~y~~~f~~~C~ 76 (77)
T 1g47_A 63 ---CEHDFQMLFAPCWI 76 (77)
T ss_dssp ---CHHHHHHHCCCC--
T ss_pred ---CHHHHHHHhhcccC
Confidence 56999999999995
No 215
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.9e-08 Score=84.87 Aligned_cols=77 Identities=8% Similarity=-0.174 Sum_probs=58.5
Q ss_pred cccccccccccccccccccccCCccccchhhhhhhhh--hHHHHHhhcccccccccccceEEEecccccccccccccccc
Q psy17256 505 LKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIV 582 (768)
Q Consensus 505 ~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~ 582 (768)
..|+..|+.. ..++.|..|.++|. +.++.+.++ .||+.||+|+.|+..+.
T Consensus 3 ~~yC~~~y~~-------------~~~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~--------- 54 (82)
T 2ehe_A 3 SGSSGPCYDN-------------TFANTCAECQQLIGHDSRELFYEDR------HFHEGCFRCCRCQRSLA--------- 54 (82)
T ss_dssp CCCCCCCCCC-------------CCSCBCTTTCCBCCSSCCBCCCSSC------CCBTTTSBCTTTCCBCS---------
T ss_pred ceechhHhCc-------------ccCCcCccCCCccccCcEEEEeCCc------cccccCCeecCCCCccC---------
Confidence 3567777654 24567999999998 667777787 99999999999995432
Q ss_pred ccccccCCCCcceeecccccccccchhhhhhhccccccc
Q psy17256 583 KPYGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSK 621 (768)
Q Consensus 583 ~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~ 621 (768)
+ ..++.+++.+|| ..||.++|+++|++
T Consensus 55 -------~-~~f~~~~~~~~C----~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 55 -------D-EPFTCQDSELLC----NDCYCSAFSSGPSS 81 (82)
T ss_dssp -------S-CCEEEETTEEEE----TTTSSCCGGGSSCC
T ss_pred -------C-CccEeeCCEEEC----HHHHhhhcCCCCCC
Confidence 1 235678888854 58999999999964
No 216
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.38 E-value=2.6e-08 Score=82.38 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=51.4
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
++.|..|.++|.+..+.+.++ .||+.||.|+.|+..+. + ..++.+++.+| |..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~----------------~-~~~~~~~~~~y----C~~ 57 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQ------PWHKECFVCTACRKQLS----------------G-QRFTARDDFAY----CLN 57 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSS------EEETTTSBCSSSCCBCT----------------T-SCCEESSSSEE----CHH
T ss_pred CCCCcccCCeeccceEEECcc------ccCCCCCccCCCCCcCC----------------c-CceEeeCCeEE----CHH
Confidence 456999999998877777777 99999999999995432 1 23567778884 569
Q ss_pred hhhhhccccccc
Q psy17256 610 ICFRSFGAKCSK 621 (768)
Q Consensus 610 ~y~~~f~~~C~~ 621 (768)
||.++|+++|++
T Consensus 58 cy~~~f~~~c~~ 69 (70)
T 2d8z_A 58 CFCDLYASGPSS 69 (70)
T ss_dssp HHHHHTCCCCTT
T ss_pred HHHHHhccccCC
Confidence 999999999964
No 217
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=3.2e-08 Score=84.35 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=50.1
Q ss_pred cchhhhhhhhh-hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 531 LEFHSFLKRIA-LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 531 ~~C~~c~k~Ia-~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
+.|..|.++|. ..++.+.++ .||+.||+|+.|+..+. + .++.+++.+| |..
T Consensus 16 ~~C~~C~~~I~~~~~v~a~~~------~wH~~CF~C~~C~~~L~----------------~--~~~~~~g~~y----C~~ 67 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLALDK------QWHVSCFKCQTCSVILT----------------G--EYISKDGVPY----CES 67 (80)
T ss_dssp SCCTTTCCCCSSSCCEEETTE------EECTTTCBCSSSCCBCS----------------S--CCEEETTEEE----CTT
T ss_pred CCCcCcCCeeCCCeEEEECCc------ccccccCCcCcCCCCcC----------------C--CeEEECCEEE----CHH
Confidence 45999999996 456667777 99999999999984321 1 3578888995 458
Q ss_pred hhhhhccccccc
Q psy17256 610 ICFRSFGAKCSK 621 (768)
Q Consensus 610 ~y~~~f~~~C~~ 621 (768)
||.++|+++|++
T Consensus 68 ~y~~~fg~~C~~ 79 (80)
T 2dj7_A 68 DYHAQFGSGPSS 79 (80)
T ss_dssp HHHHHTTCCSTT
T ss_pred HHHHHcCCCCCC
Confidence 999999999974
No 218
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=4e-08 Score=83.77 Aligned_cols=65 Identities=9% Similarity=-0.049 Sum_probs=49.9
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceee-cccccccccch
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIR-VRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~-~~~~~c~~yC~ 608 (768)
++.|..|.++|.+.++.+.++ .||+.||+|+.|+..+. |. .++.+ ++.+ ||.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~~--------------~f~~~~~g~~----yC~ 67 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGK------AYHPGCFTCVVCHRGLD---GI--------------PFTVDATSQI----HCI 67 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTE------EECTTTCBCSSSCCBCT---TS--------------CEECCTTCCC----EEH
T ss_pred CCccccCCCeecceeEEECCc------cccHHhcCcccCCCccC---CC--------------eeEECCCCEE----ECH
Confidence 456999999999887788887 99999999999985432 11 12333 5677 456
Q ss_pred hhhhhhccccccc
Q psy17256 609 LICFRSFGAKCSK 621 (768)
Q Consensus 609 ~~y~~~f~~~C~~ 621 (768)
.||.++|+++|++
T Consensus 68 ~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 68 EDFHRKFASGPSS 80 (81)
T ss_dssp HHHHHHTTSSSCC
T ss_pred HHHHHHhcCcCCC
Confidence 9999999999974
No 219
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.35 E-value=1.3e-07 Score=67.55 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.0
Q ss_pred ccccccccccHHHHhhhcccCC
Q psy17256 102 RVTQVWFQNSRARQKKHLHTGK 123 (768)
Q Consensus 102 ~~vqvWFqNrRak~k~~~~~~~ 123 (768)
+||+|||||||+|||++.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999877643
No 220
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.35 E-value=4.2e-08 Score=83.37 Aligned_cols=77 Identities=10% Similarity=-0.079 Sum_probs=58.5
Q ss_pred cccccccccccccccccccccCCccccchhhhhhhhhhHHHHHhhcccccccccccceEEEecccccccccccccccccc
Q psy17256 505 LKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKP 584 (768)
Q Consensus 505 ~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~ 584 (768)
..|+..|+.+ ..++.|..|.+.|.+..+.+.++ .||..||+|+.|+..+.
T Consensus 3 ~~yC~~cy~~-------------~~~~~C~~C~~~I~~~~v~a~~~------~~H~~CF~C~~C~~~L~----------- 52 (80)
T 2cuq_A 3 SGSSGPCYEN-------------KFAPRCARCSKTLTQGGVTYRDQ------PWHRECLVCTGCQTPLA----------- 52 (80)
T ss_dssp CCSCCCCCCC-------------CSSCCCTTTCCCCCSCCEESSSS------EECTTTCBCSSSCCBCT-----------
T ss_pred cEEcHHHHcc-------------ccCCcCCCCCCEecCcEEEECCc------hhhhhhCCcccCCCcCC-----------
Confidence 3566676654 23567999999998887777777 99999999999995432
Q ss_pred ccccCCCCcceeecccccccccchhhhhhhccccccc
Q psy17256 585 YGFDDGAGLMYIRVRILLKGRLSVLICFRSFGAKCSK 621 (768)
Q Consensus 585 ~~~~dg~~~~~~~~~~~~c~~yC~~~y~~~f~~~C~~ 621 (768)
+ ..++.+++.+| |..||.++|+++|+.
T Consensus 53 -----~-~~~~~~~~~~y----C~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 53 -----G-QQFTSRDEDPY----CVACFGELFASGPSS 79 (80)
T ss_dssp -----T-CCEEECSSSEE----EHHHHHHHTTCSTTC
T ss_pred -----C-CeeEeECCEEE----CHHHHHHHcCCCCCC
Confidence 1 23567788884 569999999999963
No 221
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.34 E-value=4.4e-08 Score=81.41 Aligned_cols=66 Identities=9% Similarity=-0.169 Sum_probs=52.2
Q ss_pred cccchhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 529 LHLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 529 ~g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
.++.|..|.++|. +.++.+.++ .||..||.|+.|+..+. + ..++.+++.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~~~~y---- 56 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQ------TWHEHCFLCSGCEQPLG---------------S--RSFVPDKGAHY---- 56 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTC------CEETTTCBCTTTCCBTT---------------T--SCEEEETTEEE----
T ss_pred cCCCCccCCCccccCccEEEECcc------ccCcccCeECCCCCcCC---------------C--CccCCcCCeEE----
Confidence 3566999999998 567777887 99999999999995432 1 23567788884
Q ss_pred chhhhhhhccccccc
Q psy17256 607 SVLICFRSFGAKCSK 621 (768)
Q Consensus 607 C~~~y~~~f~~~C~~ 621 (768)
|..||.++|+++|+.
T Consensus 57 C~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 57 CVPCYENKFASGPSS 71 (72)
T ss_dssp EHHHHHHHTSCCCCC
T ss_pred CHHHHHHHccCcCCC
Confidence 569999999999963
No 222
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.31 E-value=7.7e-08 Score=83.63 Aligned_cols=65 Identities=6% Similarity=-0.240 Sum_probs=52.2
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
.+.|..|.+.|.+..+.+.++ .||..||.|+.|+..+. + ..+|.+++.+| |..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~g~~y----C~~ 77 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDK------YRHPECFVCADCNLNLK---------------Q--KGYFFVEGELY----CET 77 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSC------EECTTTCCCSSSCCCTT---------------T--SCCEEETTEEE----CHH
T ss_pred CCCcccCCCEecccEEEECCc------eECccCCEecCCCCCCC---------------C--CCeEeECCEEE----CHH
Confidence 345999999999987777787 99999999999995432 1 23577788884 568
Q ss_pred hhhhhccccccc
Q psy17256 610 ICFRSFGAKCSK 621 (768)
Q Consensus 610 ~y~~~f~~~C~~ 621 (768)
||.++|+++|.+
T Consensus 78 ~y~~~f~p~~~g 89 (89)
T 1x64_A 78 HARARTSGPSSG 89 (89)
T ss_dssp HHHHHSSSCCCC
T ss_pred HHHHHhCCCCCC
Confidence 999999999864
No 223
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.28 E-value=5.3e-08 Score=80.94 Aligned_cols=66 Identities=11% Similarity=-0.131 Sum_probs=51.9
Q ss_pred cccchhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 529 LHLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 529 ~g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
.++.|..|.+.|. +.++.+.++ .||..||.|+.|+..+. + ..++.+++.+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~~~~y---- 56 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGS------SWHETCFICHRCQQPIG---------------T--KSFIPKDNQNF---- 56 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTE------EEETTTTCCSSSCCCCC---------------S--SSEEEETTEEE----
T ss_pred cCCCCccCCCcccCCceEEEECcC------eecccCCcccccCCccC---------------C--CccCccCCeEE----
Confidence 3566999999998 456777787 99999999999995432 1 24567888884
Q ss_pred chhhhhhhccccccc
Q psy17256 607 SVLICFRSFGAKCSK 621 (768)
Q Consensus 607 C~~~y~~~f~~~C~~ 621 (768)
|..||.++|+++|+.
T Consensus 57 C~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 57 CVPCYEKQHASGPSS 71 (72)
T ss_dssp EHHHHHHHTSSCCCC
T ss_pred CHHHHhHHhCCCCCC
Confidence 569999999999963
No 224
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.23 E-value=1.2e-07 Score=80.52 Aligned_cols=66 Identities=6% Similarity=-0.302 Sum_probs=52.4
Q ss_pred CccccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 527 GALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 527 G~~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
+...+.|..|.+.|.+..+.+.++ .||+.||.|+.|+..+. + .+|.+++.+|
T Consensus 12 ~~~~~~C~~C~~~I~~~~v~a~~~------~~H~~CF~C~~C~~~L~---------------~---~~f~~~g~~y---- 63 (79)
T 2cor_A 12 GLGKYICQKCHAIIDEQPLIFKND------PYHPDHFNCANCGKELT---------------A---DARELKGELY---- 63 (79)
T ss_dssp CCCCCBCTTTCCBCCSCCCCCSSS------CCCTTTSBCSSSCCBCC---------------T---TCEEETTEEE----
T ss_pred ccCCCCCccCCCEecceEEEECcc------eeCCCCCEeCCCCCccC---------------C---CCEeECCEEe----
Confidence 334566999999999888888888 99999999999995433 1 1367888884
Q ss_pred chhhhhhhcccccc
Q psy17256 607 SVLICFRSFGAKCS 620 (768)
Q Consensus 607 C~~~y~~~f~~~C~ 620 (768)
|..||.++|++++.
T Consensus 64 C~~cy~~~f~p~~s 77 (79)
T 2cor_A 64 CLPCHDKMGVSGPS 77 (79)
T ss_dssp CHHHHHTTSCCSSC
T ss_pred CHHHHHHhCCCCCC
Confidence 56899999999774
No 225
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.23 E-value=1.1e-07 Score=81.26 Aligned_cols=65 Identities=17% Similarity=0.019 Sum_probs=51.7
Q ss_pred cccchhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 529 LHLEFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 529 ~g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
.++.|..|.+.|. ++++.+.++ .||+.||+|+.|+..+. + ..++.+++.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~~~~y---- 66 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGT------VWHKDCFTCSNCKQVIG---------------T--GSFFPKGEDFY---- 66 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSC------EEETTTCCCSSSCCCCT---------------T--SCEEEETTEEE----
T ss_pred cCCcCccCCcccccCceEEEECcc------ccccccCchhhCCCccC---------------C--CccEeeCCEEE----
Confidence 3566999999998 677778887 99999999999995433 1 24577888884
Q ss_pred chhhhhhhcccccc
Q psy17256 607 SVLICFRSFGAKCS 620 (768)
Q Consensus 607 C~~~y~~~f~~~C~ 620 (768)
|..||.++|+++|.
T Consensus 67 C~~cy~~~f~~~~~ 80 (82)
T 1x63_A 67 CVTCHETKFASGPS 80 (82)
T ss_dssp EHHHHHHHTSCCCS
T ss_pred CHHHHHHHhCCCCC
Confidence 56999999999985
No 226
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.23 E-value=1.1e-07 Score=77.67 Aligned_cols=63 Identities=14% Similarity=0.007 Sum_probs=50.2
Q ss_pred cccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 529 LHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.++.|..|.+.|.+..+.+.++ .||+.||.|+.|+..+. + ..++.+++.+| |.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~----------------~-~~~~~~~g~~y----C~ 56 (66)
T 1nyp_A 4 GVPICGACRRPIEGRVVNAMGK------QWHVEHFVCAKCEKPFL----------------G-HRHYERKGLAY----CE 56 (66)
T ss_dssp CCCEETTTTEECCSCEECCTTS------BEETTTCBCTTTCCBCS----------------S-SCCEEETTEEE----CH
T ss_pred CCCCCcccCCEecceEEEECcc------ccccCcCEECCCCCCCC----------------C-CceEeECCcEE----CH
Confidence 3456999999999887778887 99999999999995432 1 24577888885 56
Q ss_pred hhhhhhcccc
Q psy17256 609 LICFRSFGAK 618 (768)
Q Consensus 609 ~~y~~~f~~~ 618 (768)
.||.++|+++
T Consensus 57 ~~y~~~f~~k 66 (66)
T 1nyp_A 57 THYNQLFGDV 66 (66)
T ss_dssp HHHHHHCSCC
T ss_pred HHHHHHhCCC
Confidence 8999999975
No 227
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.20 E-value=1.6e-07 Score=79.92 Aligned_cols=67 Identities=9% Similarity=-0.109 Sum_probs=52.3
Q ss_pred cccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcce-eecccccccccc
Q psy17256 529 LHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMY-IRVRILLKGRLS 607 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~-~~~~~~~c~~yC 607 (768)
.++.|..|.++|.+..+.+.++ .||+.||.|+.|+..+. +|.. ++ .+++.+| |
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~g~~-f~~~~~~~~~----C 67 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGPFMVAGEF------KYHPECFACMSCKVIIE---------------DGDA-YALVQHATLY----C 67 (81)
T ss_dssp SSCBCTTTCCBCCSCCBCCTTC------CBCTTSCBCTTTCCBCC---------------TTSC-EEECSSSCEE----E
T ss_pred cCCcCccCCCCcCceEEEECCc------eeccccCCccCCCCccC---------------CCCc-EEEeeCCEEE----C
Confidence 4667999999999888888888 99999999999995432 2222 23 4677884 5
Q ss_pred hhhhhhhccccccc
Q psy17256 608 VLICFRSFGAKCSK 621 (768)
Q Consensus 608 ~~~y~~~f~~~C~~ 621 (768)
..||.++|++.|.+
T Consensus 68 ~~c~~~~~~~~~sg 81 (81)
T 1x6a_A 68 GKCHNEVVSGPSSG 81 (81)
T ss_dssp HHHHHHHHCTTSCC
T ss_pred HHHHHHHhcCCCCC
Confidence 68999999999864
No 228
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.19 E-value=9e-08 Score=81.26 Aligned_cols=65 Identities=5% Similarity=-0.221 Sum_probs=51.8
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
.+.|..|.+.|.+.++.+.++ .||..||.|+.|+..+. + ..++.+++.+| |..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~--------------~~~~~~~g~~y----C~~ 67 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDR------HRHPECYVCTDCGTNLK---Q--------------KGHFFVEDQIY----CEK 67 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSC------EECTTTTSCSSSCCCHH---H--------------HCCEESSSCEE----CHH
T ss_pred CCccccCCCCccCcEEEECcc------eeCcCcCeeCCCCCCCC---C--------------CCeEeECCEEE----CHH
Confidence 456999999999887777787 99999999999995543 1 13567778884 568
Q ss_pred hhhhhccccccc
Q psy17256 610 ICFRSFGAKCSK 621 (768)
Q Consensus 610 ~y~~~f~~~C~~ 621 (768)
||.++|++++.+
T Consensus 68 cy~~~~~p~g~g 79 (79)
T 1x62_A 68 HARERVSGPSSG 79 (79)
T ss_dssp HHHHHHSSCCCC
T ss_pred HHHHHhCCCCCC
Confidence 999999999753
No 229
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.12 E-value=2.1e-07 Score=77.35 Aligned_cols=63 Identities=8% Similarity=-0.101 Sum_probs=49.3
Q ss_pred ccchhhhhhhhhh----HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccc
Q psy17256 530 HLEFHSFLKRIAL----VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGR 605 (768)
Q Consensus 530 g~~C~~c~k~Ia~----~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~ 605 (768)
++.|..|.++|.+ .++.+.++ .||..||.|+.|+..+. | ..++.+++.+|
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~------~wH~~CF~C~~C~~~L~---~--------------~~f~~~~g~~y--- 58 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEER------QWHNDCFNCKKCSLSLV---G--------------RGFLTERDDIL--- 58 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSC------EECTTTCBCSSSCCBCT---T--------------SCCEECSSSEE---
T ss_pred CCCCcCCCccccCCCCcceEEECCc------ccCcccCEeccCCCcCC---C--------------CccEeECCEEE---
Confidence 4569999999986 66677787 99999999999995432 1 23466788885
Q ss_pred cchhhhhhhccccc
Q psy17256 606 LSVLICFRSFGAKC 619 (768)
Q Consensus 606 yC~~~y~~~f~~~C 619 (768)
|..||.++|++++
T Consensus 59 -C~~c~~~~~~p~~ 71 (72)
T 1x4l_A 59 -CPDCGKDISGPSS 71 (72)
T ss_dssp -CHHHHHTCCCSSC
T ss_pred -ChhHcCcccCCCC
Confidence 5689999999987
No 230
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.07 E-value=3.3e-07 Score=75.73 Aligned_cols=64 Identities=14% Similarity=-0.058 Sum_probs=50.7
Q ss_pred ccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 530 HLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 530 g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
.+.|..|.+.|.+..+.+.++ .||+.||+|+.|+..+. + ..++.+++.+| |..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~f~~~~g~~y----C~~ 57 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNN------SWHPECFRCDLCQEVLA---------------D--IGFVKNAGRHL----CRP 57 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTE------EECTTTSBCSSSCCBCS---------------S--SCCEEETTEEE----CHH
T ss_pred CCcCccCCCEecceEEEECcc------cccccCCEeCCCCCcCC---------------C--CccEeECCeEE----CHH
Confidence 355999999999888888887 99999999999995433 1 23566788885 568
Q ss_pred hhhhhcccccc
Q psy17256 610 ICFRSFGAKCS 620 (768)
Q Consensus 610 ~y~~~f~~~C~ 620 (768)
||.++|++++.
T Consensus 58 c~~~~~~~~~~ 68 (70)
T 2d8x_A 58 CHNREKASGPS 68 (70)
T ss_dssp HHHHHHCCCSC
T ss_pred HhhhhcCCCCC
Confidence 99999998764
No 231
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.05 E-value=4.2e-07 Score=79.29 Aligned_cols=66 Identities=8% Similarity=-0.214 Sum_probs=50.0
Q ss_pred ccchhhhhhhhhh-HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 530 HLEFHSFLKRIAL-VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 530 g~~C~~c~k~Ia~-~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
++.|..|.+.|.+ ..+.+.++ .||..||.|+.|...+. + ..++.+++.+ ||.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~------~~H~~CF~C~~C~~~L~---------------~--~~~~~~~g~~----yC~ 67 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQ------VFHISCFRCSYCNNKLS---------------L--GTYASLHGRI----YCK 67 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSS------EEETTTCBCTTTCCBCC---------------T--TTCCCSSSCC----CCH
T ss_pred CCcCccCCCccCCceeEEECCC------EECCCCCeeCCCCCCCC---------------C--CCcEeECCEE----ECH
Confidence 3569999999964 34456676 99999999999985433 1 1256777888 456
Q ss_pred hhhhhhcccccccC
Q psy17256 609 LICFRSFGAKCSKC 622 (768)
Q Consensus 609 ~~y~~~f~~~C~~C 622 (768)
.||.++|+++|.-+
T Consensus 68 ~~y~~~f~~kc~~~ 81 (91)
T 2d8y_A 68 PHFNQLFKSKGNYD 81 (91)
T ss_dssp HHHHHHSCCCSCCC
T ss_pred HHHHHHhCCCcCcc
Confidence 99999999999733
No 232
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.05 E-value=4.7e-07 Score=83.59 Aligned_cols=72 Identities=10% Similarity=-0.117 Sum_probs=56.7
Q ss_pred chhhhhhhhh--hHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccchh
Q psy17256 532 EFHSFLKRIA--LVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSVL 609 (768)
Q Consensus 532 ~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~ 609 (768)
.|..|.+.|. +.++.+.++ .||..||.|+.|+..+. .|. .++.+++.+| |..
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~------~~H~~CF~C~~C~~~L~---------------~g~-~f~~~~g~~y----C~~ 63 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDK------VYHLECFKCAACQKHFS---------------VGD-RYLLINSDIV----CEQ 63 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSC------CCCTTTCBCTTTCCBCC---------------TTC-EEEECSSSEE----EGG
T ss_pred cccCCCCeecCCceEEEECCc------ccccccCccccCCCCCC---------------CCC-cEEeeCCEEE----cHH
Confidence 6999999998 566777787 99999999999996542 111 3567778885 558
Q ss_pred hhhhhcccccccCCCCCCCC
Q psy17256 610 ICFRSFGAKCSKCCRGIASS 629 (768)
Q Consensus 610 ~y~~~f~~~C~~C~~~I~~~ 629 (768)
||.++|+++|..|+.++...
T Consensus 64 cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 64 DIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp GHHHHHHHHTCCCCCCSCCS
T ss_pred HhHHHhccccCCCCCCCccC
Confidence 99999999999998877644
No 233
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=97.95 E-value=9.2e-07 Score=81.69 Aligned_cols=63 Identities=17% Similarity=0.048 Sum_probs=48.2
Q ss_pred cccchhhhhhhhhhHH-HHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccc
Q psy17256 529 LHLEFHSFLKRIALVL-SEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLS 607 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~~~-~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC 607 (768)
..+.|..|.++|.+.. +.+.++ .||+.||+|+.|+..+. +....+|.+++.+ ||
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~------~wH~~CF~C~~C~~~L~---------------~~g~~f~~~dg~~----yC 114 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDS------YWHSRCLKCSSCQAQLG---------------DIGTSSYTKSGMI----LC 114 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTE------EEETTTSBCTTTCCBGG---------------GTTCCCBCSSSCC----BC
T ss_pred cCCcCcCCCCCcCCcEEEEeCCc------EEcccccCcCcCCCccc---------------ccCCceEEECCEE----eC
Confidence 3566999999999885 677787 99999999999995432 1001357788888 45
Q ss_pred hhhhhhhcc
Q psy17256 608 VLICFRSFG 616 (768)
Q Consensus 608 ~~~y~~~f~ 616 (768)
..||.++||
T Consensus 115 ~~cy~~~Fg 123 (123)
T 2l4z_A 115 RNDYIRLFG 123 (123)
T ss_dssp HHHHHHHCC
T ss_pred HHHhhhhcC
Confidence 689999986
No 234
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.87 E-value=1.1e-06 Score=72.97 Aligned_cols=65 Identities=8% Similarity=-0.126 Sum_probs=48.9
Q ss_pred ccchhhhhhhhhh--HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccc
Q psy17256 530 HLEFHSFLKRIAL--VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLS 607 (768)
Q Consensus 530 g~~C~~c~k~Ia~--~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC 607 (768)
++.|..|.++|.. ..+.+.++ .||..||.|+.|+..+. + ..++.+++.+| |
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~------~~H~~CF~C~~C~~~L~----------------~-~~~~~~~~~~y----C 57 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDR------VFHVGCFVCSTCRAQLR----------------G-QHFYAVERRAY----C 57 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSS------EECTTTCBCSSSCCBCT----------------T-SCEEESSSCEE----E
T ss_pred CCCCccCCCccCCCceEEEECCC------eEcccCCcccccCCcCC----------------c-CcCEeeCCeEE----C
Confidence 4569999999974 56677787 99999999999995432 1 23577788884 5
Q ss_pred hhhhhhhcccccccC
Q psy17256 608 VLICFRSFGAKCSKC 622 (768)
Q Consensus 608 ~~~y~~~f~~~C~~C 622 (768)
..||.++|+ +|..+
T Consensus 58 ~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 58 EGCYVATLE-SGPSS 71 (72)
T ss_dssp HHHHHHHHH-TCSSC
T ss_pred HHHHHHHHc-cCCCC
Confidence 689999984 56554
No 235
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.84 E-value=1.8e-06 Score=72.10 Aligned_cols=64 Identities=13% Similarity=-0.060 Sum_probs=49.8
Q ss_pred cccchhhhhhhhhhHHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeecccccccccch
Q psy17256 529 LHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRLSV 608 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~yC~ 608 (768)
.++.|..|.++|.+..+.+.++ .||+.||.|+.|+..+. +|. .++.+++.+|| .
T Consensus 4 ~~~~C~~C~~~I~~~~v~a~~~------~wH~~CF~C~~C~~~L~---------------~~~-~f~~~~~~~yC----~ 57 (73)
T 1wig_A 4 GSSGCDSCEKYITGRVLEAGEK------HYHPSCALCVRCGQMFA---------------EGE-EMYLQGSSIWH----P 57 (73)
T ss_dssp SCCSCSSSCCCCSSCCBCCSSC------CBCTTTSCCSSSCCCCC---------------SSC-CCEEETTEEEC----T
T ss_pred CcCCcccCCCEecCeeEEeCCC------CCCCCcCEeCCCCCCCC---------------CCC-eeEeeCCEEEC----h
Confidence 4567999999999988888887 99999999999995432 122 46778888855 5
Q ss_pred hhhhhhcccc
Q psy17256 609 LICFRSFGAK 618 (768)
Q Consensus 609 ~~y~~~f~~~ 618 (768)
.||.++++..
T Consensus 58 ~C~~~~~~~~ 67 (73)
T 1wig_A 58 ACRQAARTED 67 (73)
T ss_dssp THHHHTSSSS
T ss_pred HHChHhhccc
Confidence 7898888764
No 236
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=97.78 E-value=1.7e-06 Score=71.51 Aligned_cols=61 Identities=8% Similarity=-0.162 Sum_probs=46.9
Q ss_pred cccchhhhhhhhhh--HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcceeeccccccccc
Q psy17256 529 LHLEFHSFLKRIAL--VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGRL 606 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~--~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~y 606 (768)
.++.|..|.+.|.. .++.+.++ .||+.||.|+.|+..+.. +.++.+++.+|
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~------~~H~~CF~C~~C~~~L~~-----------------~~~~~~~g~~y---- 62 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGE------LYHEQCFVCAQCFQQFPE-----------------GLFYEFEGRKY---- 62 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTE------EEETTTSSCTTTCCCCGG-----------------GCCEEETTEEE----
T ss_pred CCccchhcCccccCCceEEEeCcC------eeCcCCCcccCCCCCCCC-----------------CCeEeECCeEe----
Confidence 45669999999984 35667787 899999999999965431 23567888884
Q ss_pred chhhhhhhcc
Q psy17256 607 SVLICFRSFG 616 (768)
Q Consensus 607 C~~~y~~~f~ 616 (768)
|..||.++||
T Consensus 63 C~~~y~~lf~ 72 (72)
T 3f6q_B 63 CEHDFQMLFA 72 (72)
T ss_dssp CHHHHHHHTC
T ss_pred CHHHHHHhhC
Confidence 5689999886
No 237
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.77 E-value=3e-06 Score=72.35 Aligned_cols=65 Identities=8% Similarity=-0.188 Sum_probs=46.3
Q ss_pred ccchhhhhhhhhh-HHHHHhhcccccccccccceEEEeccccccccccccccccccccccCCCCcc-eeecccccccccc
Q psy17256 530 HLEFHSFLKRIAL-VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLM-YIRVRILLKGRLS 607 (768)
Q Consensus 530 g~~C~~c~k~Ia~-~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~-~~~~~~~~c~~yC 607 (768)
.+.|..|.+.|.. ..+.+.++ .||..||+|+.|+..+.. + .++ +.+++.+| |
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~------~wH~~CF~C~~C~~~L~~---------------~-~~~~~~~~g~~y----C 68 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGH------FFHRSCFRCHTCEATLWP---------------G-GYEQHPGDGHFY----C 68 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTB------CCBTTTCBCSSSCCBCCT---------------T-SEECCTTTCCCE----E
T ss_pred CCCCcccCCCcccceEEEECCC------eeCCCcCEEcCCCCCcCC---------------C-ceeEeCcCCEEE----C
Confidence 4569999999953 34556777 999999999999954331 1 111 24677885 5
Q ss_pred hhhhhhhcccccc
Q psy17256 608 VLICFRSFGAKCS 620 (768)
Q Consensus 608 ~~~y~~~f~~~C~ 620 (768)
..||.++|+.-+.
T Consensus 69 ~~~y~~~~~~~~~ 81 (82)
T 2co8_A 69 LQHLPQTDSGPSS 81 (82)
T ss_dssp TTTCCCCCCCCCC
T ss_pred hHHHHhhhcCCCC
Confidence 5899999987654
No 238
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=4.1e-06 Score=70.37 Aligned_cols=69 Identities=4% Similarity=-0.156 Sum_probs=50.2
Q ss_pred cccccccccccccccccccccCCccccchhhhhhhhhh-----HHHHHhhcccccccccccceEEEeccccccccccccc
Q psy17256 505 LKYNTAAEDLRASFTPLVCSTDGALHLEFHSFLKRIAL-----VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTR 579 (768)
Q Consensus 505 ~ky~~~c~~~~~~F~Pl~~s~~G~~g~~C~~c~k~Ia~-----~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~~~~~g~r 579 (768)
..|+..|+.+. .++.|..|.++|.+ ..+.+.++ .||+.||+|+.|+..+. |
T Consensus 3 ~~yC~~cy~~~-------------~~~~C~~C~~~I~~~g~~~~~~~a~~~------~~H~~CF~C~~C~~~L~---~-- 58 (77)
T 2egq_A 3 SGSSGDCYKNF-------------VAKKCAGCKNPITGFGKGSSVVAYEGQ------SWHDYCFHCKKCSVNLA---N-- 58 (77)
T ss_dssp SSCCTTCCCSC-------------CCCCCSSSCCCCCCCSSCCCEEEETTE------EEETTTCBCSSSCCBCT---T--
T ss_pred CeEchhHhchh-------------hCccCcccCCcccCCCCCceeEEECcc------eeCcccCEehhcCCCCC---C--
Confidence 35677776552 45679999999986 66777787 99999999999995432 1
Q ss_pred cccccccccCCCCcceeecccccccccchhhhhh
Q psy17256 580 QIVKPYGFDDGAGLMYIRVRILLKGRLSVLICFR 613 (768)
Q Consensus 580 ~~~~~~~~~dg~~~~~~~~~~~~c~~yC~~~y~~ 613 (768)
..++.+++.+| |..||.+
T Consensus 59 ------------~~f~~~~~~~y----C~~cy~~ 76 (77)
T 2egq_A 59 ------------KRFVFHQEQVY----CPDCAKK 76 (77)
T ss_dssp ------------SCCCEETTEEC----CHHHHHH
T ss_pred ------------CccEeECCEEE----ChHHhcc
Confidence 23567888885 4578865
No 239
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.38 E-value=1.6e-05 Score=67.46 Aligned_cols=38 Identities=8% Similarity=-0.132 Sum_probs=32.5
Q ss_pred cccchhhhhhhhhhHHHHHhhcccccccccccceEEEecccccc
Q psy17256 529 LHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRVRTEFSILKAVS 572 (768)
Q Consensus 529 ~g~~C~~c~k~Ia~~~~~~~~~~~s~~~~wh~~~~~c~~c~~~~ 572 (768)
.++.|..|.+.|.+..+.+.++ .||+.||.|+.|+..+
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~------~wH~~CF~C~~C~~~L 51 (81)
T 1v6g_A 14 YGTRCFSCDQFIEGEVVSALGK------TYHPDCFVCAVCRLPF 51 (81)
T ss_dssp CCCBCTTTCCBCCSCCEEETTE------EECTTTSSCSSSCCCC
T ss_pred hCCcCccccCEeccceEEECCc------eeCccCCccccCCCCC
Confidence 4567999999999888888887 9999999999999543
No 240
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=97.25 E-value=2.1e-05 Score=63.81 Aligned_cols=58 Identities=12% Similarity=-0.034 Sum_probs=43.7
Q ss_pred ccchhhhhhhhh--hHHHHHhhcccccccccc--cceEEEeccccccccccccccccccccccCCCCcceeecccccccc
Q psy17256 530 HLEFHSFLKRIA--LVLSEKWKKMYGHVLSWL--RVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKGR 605 (768)
Q Consensus 530 g~~C~~c~k~Ia--~~~~~~~~~~~s~~~~wh--~~~~~c~~c~~~~~~~~g~r~~~~~~~~~dg~~~~~~~~~~~~c~~ 605 (768)
++.|..|.++|. +..+.+.++ .|| +.||+|+.|+..+. | ..++.+++.+||+
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~------~wH~~~~CF~C~~C~~~L~---~--------------~~f~~~~g~~yC~- 57 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNF------SWHASTECFLCSCCSKCLI---G--------------QKFMPVEGMVFCS- 57 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTE------EEETTTTTSBCTTTCCBCT---T--------------SCCEEETTEEESS-
T ss_pred cCCCcCCCCeeccCceEEEECCC------ccCCCCCCEECCCCCCcCC---C--------------CceEEECCEEecC-
Confidence 456999999999 677888888 999 99999999995432 1 2357788888663
Q ss_pred cchhhhhh
Q psy17256 606 LSVLICFR 613 (768)
Q Consensus 606 yC~~~y~~ 613 (768)
..||.+
T Consensus 58 --~~C~~k 63 (65)
T 2iyb_E 58 --VECKKR 63 (65)
T ss_dssp --HHHHHT
T ss_pred --HHHhhh
Confidence 255544
No 241
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.40 E-value=0.0011 Score=45.61 Aligned_cols=29 Identities=28% Similarity=0.722 Sum_probs=25.1
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACF 645 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF 645 (768)
..+|..|++.+.+.|.++ +.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~-~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN-CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC-SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE-ECCeEecccCC
Confidence 468999999999886655 88999999998
No 242
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.99 E-value=0.57 Score=37.94 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccc
Q psy17256 72 LQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 110 (768)
Q Consensus 72 l~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqN 110 (768)
.+.|+++|...+.+.......|+.+.+|+..+|+-||..
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 467999999999999999999999999999999999953
No 243
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.13 E-value=0.6 Score=37.84 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=37.0
Q ss_pred HHHHHhhccccCCCCCHHHHHHHHHHhCCCCCcccccccc
Q psy17256 710 QLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 749 (768)
Q Consensus 710 Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQN 749 (768)
-.+.|+++|...+.+.......|..+..|+..||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999953
No 244
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=35.29 E-value=9.7 Score=27.50 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=9.4
Q ss_pred ChHHHHHHHHhhcccccccccccc
Q psy17256 491 TWNTIAKRHAQEKHLKYNTAAEDL 514 (768)
Q Consensus 491 s~~~~~~~ae~eK~~ky~~~c~~~ 514 (768)
+|+.......+.+.|+|+..|++.
T Consensus 6 spP~s~~h~~~~~eRpYCe~CEVF 29 (42)
T 3e2u_E 6 DPPHSTHHGSRGEERPYCEICEMF 29 (42)
T ss_dssp --------------CCEETTTTEE
T ss_pred CCCcccccCCCcccCcccccceec
Confidence 444444444456779999999986
No 245
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=33.32 E-value=21 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.8
Q ss_pred CccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCccccccccc
Q psy17256 64 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQ 109 (768)
Q Consensus 64 Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFq 109 (768)
|..|+.++.......+... .+......++|..+|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4468888877665555443 22222367899999999999999964
No 246
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=32.10 E-value=44 Score=27.62 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCccccccccc
Q psy17256 60 AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQ 109 (768)
Q Consensus 60 ~rr~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFq 109 (768)
+++.+..|+.++.......+... . ...++|..+|++..+|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34456679998866555556433 2 356899999999999999974
No 247
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.93 E-value=18 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=12.3
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 1 ~~~C~~C~k~f~~~~~l 17 (27)
T 1znf_A 1 XYKCGLCERSFVEKSAL 17 (27)
T ss_dssp -CBCSSSCCBCSSHHHH
T ss_pred CccCCCCCCcCCCHHHH
Confidence 46799999999864443
No 248
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.54 E-value=21 Score=21.51 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=12.4
Q ss_pred CCcCCCCCCCCCcchh
Q psy17256 395 PTYCDGCGGEMSVTHA 410 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~ 410 (768)
|..|+.||..|.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 5689999999986443
No 249
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=30.40 E-value=19 Score=31.52 Aligned_cols=36 Identities=31% Similarity=0.547 Sum_probs=23.1
Q ss_pred hhhhcccccccCCCCCCCCcceeeec-------C---ceecccCcc
Q psy17256 611 CFRSFGAKCSKCCRGIASSDWVRKAR-------D---HVYHLACFA 646 (768)
Q Consensus 611 y~~~f~~~C~~C~~~I~~~e~~~~a~-------~---~~~H~~CF~ 646 (768)
|-+---..|..|+..|.-++.-+-.. + .-||..||.
T Consensus 20 yAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred EeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 55555569999999998876332211 1 125888884
No 250
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.74 E-value=24 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=12.3
Q ss_pred CCcCCCCCCCCCcchh
Q psy17256 395 PTYCDGCGGEMSVTHA 410 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~ 410 (768)
|..|+.||..|.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 5679999999976433
No 251
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=29.58 E-value=24 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.8
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 56899999999864433
No 252
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.30 E-value=27 Score=22.44 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=12.4
Q ss_pred CCcCCCCCCCCCcchh
Q psy17256 395 PTYCDGCGGEMSVTHA 410 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~ 410 (768)
|..|+.||..|.....
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 5689999999986433
No 253
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.99 E-value=14 Score=22.01 Aligned_cols=17 Identities=29% Similarity=0.772 Sum_probs=12.6
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 2 p~~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQL 18 (26)
Confidence 56799999999764443
No 254
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.53 E-value=16 Score=22.09 Aligned_cols=17 Identities=35% Similarity=0.866 Sum_probs=12.9
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp SEECSSSCCEESCHHHH
T ss_pred CccCCCCCcccCCHHHH
Confidence 56799999999864443
No 255
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=25.02 E-value=40 Score=29.82 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCccCCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccccHH
Q psy17256 63 VRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRA 113 (768)
Q Consensus 63 ~Rt~~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqNrRa 113 (768)
+|..+|.++...+-..+..+..+. ..++|..+|++..+|.-|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 467899999888777775554432 347899999999999999877655
No 256
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.91 E-value=31 Score=20.78 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=12.3
Q ss_pred CCcCCCCCCCCCcchh
Q psy17256 395 PTYCDGCGGEMSVTHA 410 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~ 410 (768)
|..|+.||..|.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 4689999999976443
No 257
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.80 E-value=18 Score=21.72 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.4
Q ss_pred CCcCCCCCCCCCcchh
Q psy17256 395 PTYCDGCGGEMSVTHA 410 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~ 410 (768)
|..|+.||..|.....
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 5689999999986443
No 258
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.15 E-value=22 Score=21.55 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=12.9
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 3 ~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CEECTTTCCEESCHHHH
T ss_pred CccCCCCCcccCCHHHH
Confidence 57899999999864443
No 259
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=21.91 E-value=50 Score=24.20 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=22.0
Q ss_pred ccccCCCCCCCCc--ceeeecCceecccCc--------ccccccccc
Q psy17256 618 KCSKCCRGIASSD--WVRKARDHVYHLACF--------ACEACKRQL 654 (768)
Q Consensus 618 ~C~~C~~~I~~~e--~~~~a~~~~~H~~CF--------~C~~C~~~L 654 (768)
.|.-|...+..++ .++..-+..||..|+ .|..|...+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 5667777664422 223334777888885 466666665
No 260
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.78 E-value=34 Score=24.39 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhhhhCCCCCHHHHHHHHHHcCCCcccccccccc
Q psy17256 67 FTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 110 (768)
Q Consensus 67 ~t~~Ql~~Le~~F~~~~~p~~~~r~~la~~l~l~~~~vqvWFqN 110 (768)
++.++...+...+... ....++|..+|++..+|.-|+..
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 5566655555555433 24678999999999999999864
No 261
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.58 E-value=22 Score=21.36 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=12.6
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CEECTTTSCEESCHHHH
T ss_pred CccCCCCCCccCChhHH
Confidence 46799999999764443
No 262
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.30 E-value=23 Score=22.60 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.0
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 2 p~~C~~C~k~f~~~~~L 18 (32)
T 2kfq_A 2 AFACPACPKRFMRSDAL 18 (32)
T ss_dssp CSSSSSSCTTHHHHHTT
T ss_pred CCCCCCCCcccCCHHHH
Confidence 57899999999864444
No 263
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.61 E-value=20 Score=21.82 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=12.6
Q ss_pred CCcCCCCCCCCCcchhh
Q psy17256 395 PTYCDGCGGEMSVTHAL 411 (768)
Q Consensus 395 ~~~C~~c~~~~~~~H~l 411 (768)
|..|+.||..|.....|
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSL 18 (29)
Confidence 46799999999764443
No 264
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=20.97 E-value=25 Score=26.76 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=30.2
Q ss_pred cccccHHHHHHHhhccccCCCCCHHHHHHHHHHhCCCCCccccccc
Q psy17256 703 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQ 748 (768)
Q Consensus 703 Rt~~s~~Ql~~Le~~F~~~~~p~~~~r~~LA~~lgls~~~V~vWFQ 748 (768)
|..|+.++.......+... .........+|.++|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568887766654434333 22222367899999999999999964
No 265
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.88 E-value=22 Score=24.50 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.0
Q ss_pred CCCCCcCCCCCCCCCcchhhc
Q psy17256 392 KGLPTYCDGCGGEMSVTHALN 412 (768)
Q Consensus 392 ~~~~~~C~~c~~~~~~~H~l~ 412 (768)
..-|..|+.||..|.....|.
T Consensus 5 gekp~~C~~CgK~F~~~s~L~ 25 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTLE 25 (36)
T ss_dssp SCCCCEETTTTEECSCHHHHH
T ss_pred CccCeECCCCCCccCCHhHcc
Confidence 346889999999998755443
No 266
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=20.35 E-value=31 Score=34.74 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=26.2
Q ss_pred ccccccCCCCCCCCcceeeecCceecccCc----------ccccccccc
Q psy17256 616 GAKCSKCCRGIASSDWVRKARDHVYHLACF----------ACEACKRQL 654 (768)
Q Consensus 616 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF----------~C~~C~~~L 654 (768)
-+.|..|...|..+-.... .+..||..|+ .|..|+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSS-SCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCc-cChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4589999988887622211 4677999998 566776655
No 267
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.33 E-value=39 Score=21.91 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=13.7
Q ss_pred CCCCcCCCCCCCCCcchh
Q psy17256 393 GLPTYCDGCGGEMSVTHA 410 (768)
Q Consensus 393 ~~~~~C~~c~~~~~~~H~ 410 (768)
.-|..|+.||..|.....
T Consensus 9 ~k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSSBCCTTTCCCBSSHHH
T ss_pred CCCccCCCCCcccCcHHH
Confidence 346889999999986433
Done!