RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17256
(768 letters)
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 113 bits (283), Expect = 1e-29
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 612 FRSFGAK--CSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
R FG C+ C + I + + + +D VYHL CF C AC++ S G+ + L ++C
Sbjct: 2 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVC 61
Query: 670 KSHYLELVDGGTTSSDDGADSE-----------SSHSKSKAKRVRTTFTEEQLQ 712
+ E S G + +R+ T Q
Sbjct: 62 EQDIYEWTKINGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFD 115
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 107 bits (268), Expect = 4e-28
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVT 104
S+ + + KR+RTT T EQL++L + LDSNP + L+ IA GL KRV
Sbjct: 2 SSGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVV 61
Query: 105 QVWFQNSRARQKKH 118
QVWFQN+RAR++K
Sbjct: 62 QVWFQNTRARERKS 75
Score = 106 bits (265), Expect = 9e-28
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 684 SDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVT 743
S + + KR+RTT T EQL++L + LDSNP + L+ IA GL KRV
Sbjct: 2 SSGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVV 61
Query: 744 QVWFQNSRARQKKH 757
QVWFQN+RAR++K
Sbjct: 62 QVWFQNTRARERKS 75
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 104 bits (262), Expect = 2e-27
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S KR RT T++QL+VL+ F ++++P + ++ +A +GL ++V + WF+N+ ++
Sbjct: 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62
Query: 116 KKH 118
++
Sbjct: 63 RQS 65
Score = 104 bits (262), Expect = 2e-27
Identities = 20/63 (31%), Positives = 42/63 (66%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S KR RT T++QL+VL+ F ++++P + ++ +A +GL ++V + WF+N+ ++
Sbjct: 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62
Query: 755 KKH 757
++
Sbjct: 63 RQS 65
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 105 bits (264), Expect = 2e-26
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 617 AKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
CS C + I +S+ V +A+ +VYHL CF C C+ +L G+ F + C+
Sbjct: 70 GACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129
Query: 677 VDGGTTSSDDGADSE---------------SSHSKSKAKRVRTTFTEEQLQ 712
+ G +S S + +R+ T Q
Sbjct: 130 LINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFD 180
Score = 52.7 bits (126), Expect = 5e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 615 FGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHY 673
+C+ C I + ++ A D +H C C +C+ QL G +LC++ Y
Sbjct: 4 SWKRCAGCGGKI-ADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
Query: 674 LEL 676
+ L
Sbjct: 63 IRL 65
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 98.3 bits (245), Expect = 4e-25
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S KR+RT+F QL+ +++ F ++ NPD +DL+++AQ TGL+KRV QVWFQN+RA+
Sbjct: 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62
Query: 116 KKHLHTGKMKSSQN 129
+++L +
Sbjct: 63 RRNLLRQENGGVSG 76
Score = 98.3 bits (245), Expect = 4e-25
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S KR+RT+F QL+ +++ F ++ NPD +DL+++AQ TGL+KRV QVWFQN+RA+
Sbjct: 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62
Query: 755 KKHLHTGKMKSSQN 768
+++L +
Sbjct: 63 RRNLLRQENGGVSG 76
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 101 bits (254), Expect = 5e-25
Identities = 36/63 (57%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHED-RVLCK 670
F+ FG KC+ C GI + VR+A+D VYHL CFAC CKRQL+TG+EF L ED R++CK
Sbjct: 115 FKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 174
Query: 671 SHY 673
+ Y
Sbjct: 175 ADY 177
Score = 53.8 bits (129), Expect = 2e-08
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCK 670
C+ C + I ++ KA D +H C C C L E + V CK
Sbjct: 55 GGTPEIPMCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPL--AERCFSRGESVYCK 111
Query: 671 SHYLEL 676
+ +
Sbjct: 112 DDFFKR 117
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 99.4 bits (248), Expect = 7e-25
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 612 FRSFGAK--CSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
R FG C+ C + I + + + +D VYHL CF C AC++ G+ + L ++C
Sbjct: 60 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 119
Query: 670 KSHYLELV 677
+ E
Sbjct: 120 EQDIYEWT 127
Score = 51.7 bits (124), Expect = 4e-08
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYLEL 676
C C + I + KA D +H C +C+ C +L G R LC+ YL L
Sbjct: 4 TCGGCQQNI-GDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 62
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 100 bits (251), Expect = 8e-25
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHED-RVLCK 670
F+ FG KC+ C GI + VR+A+D VYHL CFAC CKRQL+TG+EF L ED R++CK
Sbjct: 61 FKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 120
Query: 671 SHYLELVDGGTTSSDDGADSESSHSKSK 698
+ Y GG+ S + S
Sbjct: 121 ADYETAKQGGSGGSGGSGGGTPMVAASP 148
Score = 50.6 bits (121), Expect = 2e-07
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
C+ C + I ++ KA D +H C C C L E + V CK + +
Sbjct: 8 MCAGCDQHILDR-FILKALDRHWHSKCLKCSDCHVPL--AERCFSRGESVYCKDDFFKR 63
Score = 33.3 bits (76), Expect = 0.13
Identities = 3/41 (7%), Positives = 6/41 (14%), Gaps = 2/41 (4%)
Query: 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQ 653
+ + A H + Q
Sbjct: 125 TAKQGGSGGSGGSGGGT--PMVAASPERHDGGLQANPVEVQ 163
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 92.8 bits (231), Expect = 3e-23
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S + RT FT+ QL+VLQ F ++ P + E+++ + L RV VWFQN+R +
Sbjct: 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKA 62
Query: 116 KKH 118
+K
Sbjct: 63 RKS 65
Score = 92.8 bits (231), Expect = 3e-23
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S + RT FT+ QL+VLQ F ++ P + E+++ + L RV VWFQN+R +
Sbjct: 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKA 62
Query: 755 KKH 757
+K
Sbjct: 63 RKS 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 92.2 bits (229), Expect = 5e-23
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRAR 114
S S R RT + E L +LQ+ + PD + + ++ L K +FQN R
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Query: 115 QKKH 118
K
Sbjct: 63 VKHS 66
Score = 92.2 bits (229), Expect = 5e-23
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRAR 753
S S R RT + E L +LQ+ + PD + + ++ L K +FQN R
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Query: 754 QKKH 757
K
Sbjct: 63 VKHS 66
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 91.6 bits (228), Expect = 6e-23
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
K RVRT E+QL L+ + + PD E++ ++TGLS RV +VWFQN R + KK
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Score = 91.6 bits (228), Expect = 6e-23
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
K RVRT E+QL L+ + + PD E++ ++TGLS RV +VWFQN R + KK
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 90.2 bits (224), Expect = 3e-22
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 54 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRA 113
S S A + + EQL L+ +F + P ++E + ++TGLS R + WF + R
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61
Query: 114 RQKKHLHTGKMKSS 127
+ + SS
Sbjct: 62 HCRNLKGSRSGPSS 75
Score = 90.2 bits (224), Expect = 3e-22
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 693 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRA 752
S S A + + EQL L+ +F + P ++E + ++TGLS R + WF + R
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61
Query: 753 RQKKHLHTGKMKSS 766
+ + SS
Sbjct: 62 HCRNLKGSRSGPSS 75
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 84.1 bits (208), Expect = 3e-20
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
+ T+EQ+ L+A+F PD ++ R+ ++TGL++ + WF + R R ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 118 H 118
Sbjct: 62 G 62
Score = 84.1 bits (208), Expect = 3e-20
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
+ T+EQ+ L+A+F PD ++ R+ ++TGL++ + WF + R R ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
Query: 757 H 757
Sbjct: 62 G 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 86.2 bits (213), Expect = 6e-20
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 669 CKSHYLELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQD 728
CK + +E + + ++ RTT + L+ +F S P Q+
Sbjct: 57 CKLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQE 116
Query: 729 LERIAQITGLSKRVTQVWFQNSRARQKK 756
+ R+A+ L K V +VWF N R R+K+
Sbjct: 117 IMRMAEELNLEKEVVRVWFCNRRQREKR 144
Score = 84.7 bits (209), Expect = 2e-19
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 32 FQLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLE 91
+ + A+ +E + + ++ RTT + L+ +F S P Q++
Sbjct: 59 LKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIM 118
Query: 92 RIAQITGLSKRVTQVWFQNSRARQKK 117
R+A+ L K V +VWF N R R+K+
Sbjct: 119 RMAEELNLEKEVVRVWFCNRRQREKR 144
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 81.8 bits (202), Expect = 3e-19
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHED-RVLCK 670
+ FG C C + + A + YH CFAC +CK + G+ +AL + + C
Sbjct: 11 WGKFGEFCHGCSLLM--TGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCG 68
Query: 671 SHYLELV 677
+ E+V
Sbjct: 69 KCHNEVV 75
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 80.9 bits (200), Expect = 5e-19
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 60 AKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
+ + + TE+Q+++L+ NF ++ +PD L IA GL++ TQ WF+ A ++
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
Score = 80.9 bits (200), Expect = 5e-19
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 699 AKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
+ + + TE+Q+++L+ NF ++ +PD L IA GL++ TQ WF+ A ++
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 77.9 bits (192), Expect = 6e-18
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
R +G +C C + I V A YH CF C C+ G+ + +C+
Sbjct: 11 QRLYGTRCFSCDQFI--EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
Query: 672 HYLELVDGGTTS 683
L + G +S
Sbjct: 69 CSLPVSVSGPSS 80
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 77.8 bits (192), Expect = 7e-18
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S +R RTTFT QL VL+A F PD E +A L + QVWF+N RA+
Sbjct: 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62
Query: 116 KKHLHTGKMKSSQN 129
++ +
Sbjct: 63 RQQQQQQQNGGQSG 76
Score = 77.8 bits (192), Expect = 7e-18
Identities = 26/74 (35%), Positives = 35/74 (47%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S +R RTTFT QL VL+A F PD E +A L + QVWF+N RA+
Sbjct: 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62
Query: 755 KKHLHTGKMKSSQN 768
++ +
Sbjct: 63 RQQQQQQQNGGQSG 76
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 77.3 bits (190), Expect = 2e-17
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 42 GADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSK 101
G+ + + + K K K T+ Q+++L+ +F S P +L+R+ T LS+
Sbjct: 1 GSSGSSGAYPDFAPQKFKEK------TQGQVKILEDSFLKSSFPTQAELDRLRVETKLSR 54
Query: 102 RVTQVWFQNSRARQKKH--LHTGKMKSSQNRPKYG 134
R WF R + M S ++ P G
Sbjct: 55 REIDSWFSERRKLRDSMEQAVLDSMGSGKSGPSSG 89
Score = 75.4 bits (185), Expect = 7e-17
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 687 GADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVW 746
G+ S A + T+ Q+++L+ +F S P +L+R+ T LS+R W
Sbjct: 1 GSSGSSGAYPDFAPQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSW 60
Query: 747 FQNSRARQKKH 757
F R +
Sbjct: 61 FSERRKLRDSM 71
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 76.7 bits (189), Expect = 6e-17
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 611 CF-RSFGAKCSKCCRGIASSDWVRKARDHVYHLA--CFACEACKRQLSTGEEFALHEDRV 667
C+ ++ C C I + +H + CF C C + L G++F E V
Sbjct: 57 CYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMV 115
Query: 668 LCKSHY 673
C
Sbjct: 116 FCSVEC 121
Score = 56.3 bits (136), Expect = 8e-10
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
+C+ C I S+ +A + +HL F C C L GE + + D+ +CK Y++
Sbjct: 5 RCAGCDELI-FSNEYTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKN 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 75.4 bits (185), Expect = 7e-17
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVT 104
S+ + + + K K K T EQL+VLQA+F S ++L R+ T L++R
Sbjct: 2 SSGSSGPDFTPQKFKEK------TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 55
Query: 105 QVWFQNSRARQKKHLHTGKMKSSQ 128
WF + + ++ S
Sbjct: 56 DAWFTEKKKSKALKEEKMEIDESN 79
Score = 73.9 bits (181), Expect = 2e-16
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 707 TEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTGKMKSS 766
T EQL+VLQA+F S ++L R+ T L++R WF + + ++ S
Sbjct: 19 TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDES 78
Query: 767 Q 767
Sbjct: 79 N 79
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 74.2 bits (182), Expect = 1e-16
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 51 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 110
S S +K K EQL+ L+++F + P ++L+R+ T +++R WF
Sbjct: 2 SSGSSGPTKYKE----RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSE 57
Query: 111 SRARQKKH 118
R +
Sbjct: 58 RRKKVNAE 65
Score = 74.2 bits (182), Expect = 1e-16
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 690 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 749
S S +K K EQL+ L+++F + P ++L+R+ T +++R WF
Sbjct: 2 SSGSSGPTKYKE----RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSE 57
Query: 750 SRARQKKH 757
R +
Sbjct: 58 RRKKVNAE 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 76.6 bits (188), Expect = 2e-16
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKR---QLSTGEEFALHEDRVLCKSHYL 674
K + G +D V A +Y C+ QLS L K
Sbjct: 23 KQRRIKLGFTQAD-VGLALGTLYGNVFSQTTICRFEALQLSFKNMCKL-------KPLLN 74
Query: 675 ELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQ 734
+ ++ +SS + + ++ + ++ RT+ L+++F P ++ +A
Sbjct: 75 KWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLAD 134
Query: 735 ITGLSKRVTQVWFQNSRARQKK 756
L K V +VWF N R ++K+
Sbjct: 135 SLQLEKEVVRVWFCNRRQKEKR 156
Score = 74.7 bits (183), Expect = 9e-16
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 47 DHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV 106
T+ + ++ + ++ RT+ L+++F P ++ +A L K V +V
Sbjct: 86 SPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145
Query: 107 WFQNSRARQKK 117
WF N R ++K+
Sbjct: 146 WFCNRRQKEKR 156
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 75.1 bits (184), Expect = 5e-16
Identities = 23/85 (27%), Positives = 33/85 (38%)
Query: 33 QLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER 92
L+ + + S+S KR RT+ L+ F P Q +
Sbjct: 69 LLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITH 128
Query: 93 IAQITGLSKRVTQVWFQNSRARQKK 117
IA GL K V +VWF N R + K+
Sbjct: 129 IANQLGLEKDVVRVWFSNRRQKGKR 153
Score = 73.6 bits (180), Expect = 2e-15
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 685 DDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQ 744
+ S+S KR RT+ L+ F P Q + IA GL K V +
Sbjct: 82 NLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141
Query: 745 VWFQNSRARQKK 756
VWF N R + K+
Sbjct: 142 VWFSNRRQKGKR 153
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 74.6 bits (183), Expect = 8e-16
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 681 TTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSK 740
+ SS +S S+ ++ RT+ L+ +F + P +D+ IA+ + K
Sbjct: 83 SLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEK 142
Query: 741 RVTQVWFQNSRARQKK 756
V +VWF N R ++K+
Sbjct: 143 EVIRVWFSNRRQKEKR 158
Score = 73.1 bits (179), Expect = 2e-15
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 44 DSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRV 103
S +S S+ ++ RT+ L+ +F + P +D+ IA+ + K V
Sbjct: 85 SSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEV 144
Query: 104 TQVWFQNSRARQKK 117
+VWF N R ++K+
Sbjct: 145 IRVWFSNRRQKEKR 158
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 70.5 bits (173), Expect = 3e-15
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 44 DSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRV 103
D +D K K +R RTTF+ QL L+ F+ PD E +AQ T L++
Sbjct: 2 DISDCESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 61
Query: 104 TQVWFQNSRARQKKH 118
QVWFQN RAR +K
Sbjct: 62 IQVWFQNRRARLRKQ 76
Score = 69.3 bits (170), Expect = 7e-15
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 685 DDGADSESSHS---KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKR 741
+D +D ES K K +R RTTF+ QL L+ F+ PD E +AQ T L++
Sbjct: 1 EDISDCESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEA 60
Query: 742 VTQVWFQNSRARQKKH 757
QVWFQN RAR +K
Sbjct: 61 RIQVWFQNRRARLRKQ 76
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 73.0 bits (178), Expect = 3e-15
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 14/148 (9%)
Query: 610 ICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
I F + +G SD +R + +L +G E + L
Sbjct: 22 IPQAIFAQRVLCRSQG-TLSDLLRNPKPW-------------SKLKSGRETFRRMWKWLQ 67
Query: 670 KSHYLELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDL 729
+ + + + + K+ R FT+ Q + L A F+ + P +
Sbjct: 68 EPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQ 127
Query: 730 ERIAQITGLSKRVTQVWFQNSRARQKKH 757
I+Q GL +F N+R R
Sbjct: 128 ITISQQLGLELSTVSNFFMNARRRSLDK 155
Score = 65.7 bits (159), Expect = 1e-12
Identities = 17/75 (22%), Positives = 27/75 (36%)
Query: 44 DSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRV 103
+ K+ R FT+ Q + L A F+ + P + I+Q GL
Sbjct: 81 ACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELST 140
Query: 104 TQVWFQNSRARQKKH 118
+F N+R R
Sbjct: 141 VSNFFMNARRRSLDK 155
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 69.4 bits (170), Expect = 5e-15
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
C C + A D V+H+ CF C C+ QL G+ F E R C+ Y+
Sbjct: 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVERRAYCEGCYVAT 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 71.2 bits (174), Expect = 9e-15
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 35 DSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIA 94
+ + + + SK ++ RT+FT + ++ L A F+ + P GQ++ +A
Sbjct: 68 LNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMA 127
Query: 95 QITGLSKRVTQVWFQNSRARQKK 117
+ + V +VWF N R K
Sbjct: 128 KELNYDREVVRVWFSNRRQTLKN 150
Score = 71.2 bits (174), Expect = 1e-14
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 673 YLELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERI 732
+L + SK ++ RT+FT + ++ L A F+ + P GQ++ +
Sbjct: 67 WLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEM 126
Query: 733 AQITGLSKRVTQVWFQNSRARQKK 756
A+ + V +VWF N R K
Sbjct: 127 AKELNYDREVVRVWFSNRRQTLKN 150
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 67.8 bits (166), Expect = 2e-14
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 611 CF-RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
A C +C G A ++ + + +YH CF C C +Q G F E R C
Sbjct: 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYC 63
Query: 670 KSHYLEL 676
+ + L
Sbjct: 64 EHDFQML 70
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 67.4 bits (165), Expect = 3e-14
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 613 RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSH 672
S A C +C G A ++ + + +YH CF C C +Q G F E R C+
Sbjct: 8 GSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHD 66
Query: 673 YLEL 676
+ L
Sbjct: 67 FQML 70
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 67.0 bits (164), Expect = 3e-14
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 60 AKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
T TE+Q+++L+ NF ++ +PD L IA GL++ TQ WF+ A ++
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Score = 67.0 bits (164), Expect = 3e-14
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 699 AKRVRTTFTEEQLQVLQANFQ-LDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
T TE+Q+++L+ NF ++ +PD L IA GL++ TQ WF+ A ++
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 67.9 bits (165), Expect = 4e-14
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 682 TSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKR 741
SS + KS + T EQL +L++ F P ++ +++A+ +GL++
Sbjct: 8 HSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLART 67
Query: 742 VTQVWFQNSRARQKK 756
WF ++R K
Sbjct: 68 DIVSWFGDTRYAWKN 82
Score = 66.4 bits (161), Expect = 1e-13
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 44 DSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRV 103
S + KS + T EQL +L++ F P ++ +++A+ +GL++
Sbjct: 9 SSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTD 68
Query: 104 TQVWFQNSRARQKK 117
WF ++R K
Sbjct: 69 IVSWFGDTRYAWKN 82
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 66.2 bits (162), Expect = 5e-14
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S +R RT FT+EQL+ L+ FQ PD E++A+ L + +VWF+N RA+
Sbjct: 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62
Query: 116 KKH 118
++
Sbjct: 63 RRS 65
Score = 66.2 bits (162), Expect = 5e-14
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S +R RT FT+EQL+ L+ FQ PD E++A+ L + +VWF+N RA+
Sbjct: 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62
Query: 755 KKH 757
++
Sbjct: 63 RRS 65
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 66.4 bits (162), Expect = 6e-14
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 611 CF-RSFGAKCSKCCRGI---ASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDR 666
C+ KC+ C I V +H CF C+ C L+ + F H+++
Sbjct: 9 CYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKRFVFHQEQ 67
Query: 667 VLCKSHYLEL 676
V C +L
Sbjct: 68 VYCPDCAKKL 77
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 65.4 bits (160), Expect = 1e-13
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120
+R RT FT+ Q++VL+ F+++ P LE +AQ L Q+WFQN RA+ K+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 121 TGKM 124
+
Sbjct: 62 ESQF 65
Score = 65.4 bits (160), Expect = 1e-13
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759
+R RT FT+ Q++VL+ F+++ P LE +AQ L Q+WFQN RA+ K+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 760 TGKM 763
+
Sbjct: 62 ESQF 65
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 65.9 bits (161), Expect = 1e-13
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S +R RT+FT+EQ++ L+ F+ PD ER+A L + QVWF N RA+
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 62
Query: 116 KKHLHTGKMKSSQN 129
++ +
Sbjct: 63 RREEKLRNQRRQSG 76
Score = 65.9 bits (161), Expect = 1e-13
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S +R RT+FT+EQ++ L+ F+ PD ER+A L + QVWF N RA+
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 62
Query: 755 KKHLHTGKMKSSQN 768
++ +
Sbjct: 63 RREEKLRNQRRQSG 76
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 64.6 bits (158), Expect = 2e-13
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
+R RT FT +QLQ L+A FQ + PD E IA T L++ +VWF+N RA+ +K
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61
Score = 64.6 bits (158), Expect = 2e-13
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
+R RT FT +QLQ L+A FQ + PD E IA T L++ +VWF+N RA+ +K
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 64.5 bits (157), Expect = 5e-13
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
C +C + + + + A V+H++CF C C +LS G +A R+ CK H+ +L
Sbjct: 17 TCVECQKTVYPMERL-LANQQVFHISCFRCSYCNNKLSLG-TYASLHGRIYCKPHFNQL 73
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 63.5 bits (154), Expect = 5e-13
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 69 EEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
+ L +L+A + L++ P ++L +IA L V + WF+ +A Q
Sbjct: 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
Score = 63.5 bits (154), Expect = 5e-13
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 708 EEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
+ L +L+A + L++ P ++L +IA L V + WF+ +A Q
Sbjct: 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 62.8 bits (153), Expect = 1e-12
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 611 CF-RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
C R KC C + I + D + + V+H CF C CK+ + TG F + C
Sbjct: 9 CTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFPKGEDFYC 67
Query: 670 KSHYLEL 676
+ +
Sbjct: 68 VTCHETK 74
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 62.4 bits (152), Expect = 1e-12
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
S + C +C + I + + +H CF C C++ + T F +++ C Y
Sbjct: 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIPKDNQNFCVPCY 61
Query: 674 LEL 676
+
Sbjct: 62 EKQ 64
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 63.2 bits (154), Expect = 2e-12
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEAC 650
R KC C + I + D + + V+H CF+ +
Sbjct: 62 TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 63.2 bits (154), Expect = 2e-12
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
S + C +C + I + ++ +H CF C C L+ E F ++++LC
Sbjct: 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLA-NETFVAKDNKILCNKCT 61
Query: 674 LEL 676
Sbjct: 62 TRE 64
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 62.4 bits (152), Expect = 2e-12
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
F KC C R + + A D V+H CF C C S F + R C+
Sbjct: 11 LAMFSPKCGGCNRPVLEN--YLSAMDTVWHPECFVCGDCFTSFS-TGSFFELDGRPFCEL 67
Query: 672 HYLEL 676
HY
Sbjct: 68 HYHHR 72
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 61.6 bits (150), Expect = 3e-12
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
S + CS C + + +H CF C C++ L + F + C Y
Sbjct: 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVPDKGAHYCVPCY 61
Query: 674 LEL 676
Sbjct: 62 ENK 64
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 59.9 bits (146), Expect = 9e-12
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 57 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 116
K K+ + +++ + + L+ F+ + + ++ E +A+ G++ +VWF N R R K
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
Score = 59.9 bits (146), Expect = 9e-12
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 696 KSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQK 755
K K+ + +++ + + L+ F+ + + ++ E +A+ G++ +VWF N R R K
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 60.2 bits (146), Expect = 1e-11
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 611 CF-RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
C+ +F C++C + I D +H CF C C+R L+ E F + +LC
Sbjct: 9 CYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTCQDSELLC 67
Query: 670 KSHYLEL 676
Y
Sbjct: 68 NDCYCSA 74
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 59.3 bits (144), Expect = 2e-11
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
S + C KC + I +S + +D +H CF C C ++L+ G+ F ED+ C Y
Sbjct: 3 SGSSGCVKCNKAI-TSGGIT-YQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCY 59
Query: 674 LEL 676
Sbjct: 60 KNF 62
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 58.8 bits (143), Expect = 2e-11
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 64 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
TFT QL+ L+ F PD E +A GL++ QVWFQN RA+ +K
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
Score = 58.8 bits (143), Expect = 2e-11
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 703 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
TFT QL+ L+ F PD E +A GL++ QVWFQN RA+ +K
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 59.1 bits (143), Expect = 2e-11
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVR--KARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
S + C+ C I+ + + +H CF C+ C L G F D +LC
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPD 61
Query: 672 HYLEL 676
++
Sbjct: 62 CGKDI 66
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 59.3 bits (144), Expect = 2e-11
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 611 CF-RSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
C+ F +C++C + + RD +H C C C+ L G++F ++ C
Sbjct: 9 CYENKFAPRCARCSKTLTQG--GVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYC 65
Query: 670 KSHYLEL 676
+ + EL
Sbjct: 66 VACFGEL 72
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 58.9 bits (143), Expect = 2e-11
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
S + C +C + I ++ V R+ +H CF C AC++QLS G+ F +D C + +
Sbjct: 3 SGSSGCVQCKKPI-TTGGVT-YREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCF 59
Query: 674 LEL 676
+L
Sbjct: 60 CDL 62
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 58.9 bits (142), Expect = 6e-11
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIA---------------QITGLS 100
S S + R T+ +E L V+++ F + PD E IA + ++
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 101 KRVTQVWFQNSRARQKKH 118
WF N R K+
Sbjct: 63 SLKVYNWFANRRKEIKRR 80
Score = 58.9 bits (142), Expect = 6e-11
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIA---------------QITGLS 739
S S + R T+ +E L V+++ F + PD E IA + ++
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 740 KRVTQVWFQNSRARQKKH 757
WF N R K+
Sbjct: 63 SLKVYNWFANRRKEIKRR 80
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 57.3 bits (139), Expect = 7e-11
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
C C R I V A +H+ F C C++ G + C++HY
Sbjct: 3 MGVPICGACRRPIEGR--VVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHY 59
Query: 674 LEL 676
+L
Sbjct: 60 NQL 62
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 57.2 bits (138), Expect = 1e-10
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVR--KARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
S + C C + I+ + +D +H CF C C L G+ F + C+
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQK 61
Query: 672 HYLELVDGGTTSS 684
+ + S
Sbjct: 62 CGSGMDTDISGPS 74
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 57.0 bits (138), Expect = 2e-10
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLE 675
G KC C R + ++ V + +H CF C C++ L + A+H+ V CKS Y +
Sbjct: 7 GNKCGACGRTVYHAEEV-QCDGRSFHRCCFLCMVCRKNLDST-TVAIHDAEVYCKSCYGK 64
Query: 676 L 676
Sbjct: 65 K 65
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 56.7 bits (136), Expect = 2e-10
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 64 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 122
++ + VL+A + ++ P+ +L +I+ GL + + WF+ + Q + +G
Sbjct: 9 PINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSRSG 67
Score = 56.7 bits (136), Expect = 2e-10
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 703 RTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLHTG 761
++ + VL+A + ++ P+ +L +I+ GL + + WF+ + Q + +G
Sbjct: 9 PINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNSRSG 67
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 56.6 bits (136), Expect = 2e-10
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 62 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
T+EQL +L++ F +D +++ QITGL + WF ++R K
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61
Score = 56.6 bits (136), Expect = 2e-10
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 701 RVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
T+EQL +L++ F +D +++ QITGL + WF ++R K
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 59.6 bits (144), Expect = 2e-10
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 607 SVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDR 666
S + C +C + + +++ V +H +CF C C + L A +
Sbjct: 106 SRMAQKVGGSDGCPRCGQAVYAAEKV-IGAGKSWHKSCFRCAKCGKSL-ESTTLADKDGE 163
Query: 667 VLCKSHYLEL 676
+ CK Y +
Sbjct: 164 IYCKGCYAKN 173
Score = 55.0 bits (132), Expect = 9e-09
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLE 675
G KC C + + ++ V + +H +CF C CK+ L + A+H D + CKS Y +
Sbjct: 7 GKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNLDST-TVAVHGDEIYCKSCYGK 64
Query: 676 L 676
Sbjct: 65 K 65
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 56.2 bits (136), Expect = 2e-10
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 611 CFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFAL-HEDRVLC 669
C+ + KC+ C + I D + +A YH CF C C R L G F + ++ C
Sbjct: 10 CYVATLEKCATCSQPIL--DRILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHC 66
Query: 670 KSHYLEL 676
+
Sbjct: 67 IEDFHRK 73
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 56.3 bits (136), Expect = 4e-10
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
C KC GI V KARD H CF C C L + E + C++H
Sbjct: 27 LCDKCGSGI--VGAVVKARDKYRHPECFVCADCNLNLKQK-GYFFVEGELYCETHARAR 82
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 55.5 bits (134), Expect = 5e-10
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
C KC GI K RD H C+ C C L + ED++ C+ H
Sbjct: 13 QKLPMCDKCGTGI--VGVFVKLRDRHRHPECYVCTDCGTNLK-QKGHFFVEDQIYCEKHA 69
Query: 674 LEL 676
E
Sbjct: 70 RER 72
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 54.8 bits (132), Expect = 8e-10
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 611 CFRSFGA-KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
+ G C+ C I + A D +H++CF C+ C L+ E+ + C
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSL-LALDKQWHVSCFKCQTCSVILT--GEYISKDGVPYC 65
Query: 670 KSHYLEL 676
+S Y
Sbjct: 66 ESDYHAQ 72
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 54.4 bits (131), Expect = 9e-10
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLEL 676
C +C I V KA ++ +H CF C+ C+ L+ F + R LC+ +
Sbjct: 7 GCHQCGEFIIGR--VIKAMNNSWHPECFRCDLCQEVLADI-GFVKNAGRHLCRPCHNRE 62
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 54.0 bits (130), Expect = 2e-09
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 682 TSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKR 741
TS+++ + K ++ RT F+ QL VL FQ Q ++ ++ I LS +
Sbjct: 5 TSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYK 64
Query: 742 VTQVWFQNSRARQKK 756
+ WFQN R + K+
Sbjct: 65 QVKTWFQNQRMKSKR 79
Score = 51.0 bits (122), Expect = 2e-08
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 43 ADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKR 102
+ + + K ++ RT F+ QL VL FQ Q ++ ++ I LS +
Sbjct: 5 TSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYK 64
Query: 103 VTQVWFQNSRARQKK 117
+ WFQN R + K+
Sbjct: 65 QVKTWFQNQRMKSKR 79
Score = 32.1 bits (73), Expect = 0.11
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 1 GADSESSHSKSKAKRVRTTFTEEQLQVLQANFQ 33
+ K ++ RT F+ QL VL FQ
Sbjct: 10 SVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQ 42
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 53.6 bits (129), Expect = 2e-09
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 684 SDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVT 743
S + E K +R RT FTE QL L+ F+ D +A+ GLS+
Sbjct: 2 SSGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61
Query: 744 QVWFQNSRARQKK 756
+ W+QN R + KK
Sbjct: 62 KTWYQNRRMKWKK 74
Score = 52.9 bits (127), Expect = 4e-09
Identities = 24/73 (32%), Positives = 35/73 (47%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVT 104
S+ + E K +R RT FTE QL L+ F+ D +A+ GLS+
Sbjct: 2 SSGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQV 61
Query: 105 QVWFQNSRARQKK 117
+ W+QN R + KK
Sbjct: 62 KTWYQNRRMKWKK 74
Score = 34.0 bits (78), Expect = 0.019
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 1 GADSESSHSKSKAKRVRTTFTEEQLQVLQANFQ 33
+ E K +R RT FTE QL L+ F+
Sbjct: 5 SSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFE 37
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 53.6 bits (129), Expect = 3e-09
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHY 673
C+ C + I A +H F C CK + F + + C+ Y
Sbjct: 23 KRTPMCAHCNQVIRGP--FLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCY 79
Query: 674 LEL 676
+
Sbjct: 80 EKF 82
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 52.4 bits (126), Expect = 6e-09
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC-K 670
+KC KC + + ++ V + +H C CE C + L+ G A H+ + C K
Sbjct: 5 SSGMASKCPKCDKTVYFAEKV-SSLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHK 62
Query: 671 SHYLEL 676
Y L
Sbjct: 63 PCYATL 68
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 51.5 bits (123), Expect = 1e-08
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGE-EFALHEDRVLCKSHYLEL 676
C+ C + + + H +H +CF C C+ L G E + C H +
Sbjct: 17 LCALCGEHLYVLERL-CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75
Query: 677 VDGGTT 682
G ++
Sbjct: 76 DSGPSS 81
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 54.1 bits (129), Expect = 2e-08
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 21/125 (16%)
Query: 652 RQLSTGEEFALHEDRVLCKSHYLELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQL 711
+ T + AL+ V + + + K +R R +
Sbjct: 68 TPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQ 127
Query: 712 QVLQANFQLDSNPDGQDLERIAQI---------------------TGLSKRVTQVWFQNS 750
Q+L ++ NP ++ E + + +++ WF N
Sbjct: 128 QILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187
Query: 751 RARQK 755
R +
Sbjct: 188 RKEEA 192
Score = 53.0 bits (126), Expect = 5e-08
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 21/105 (20%)
Query: 33 QLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER 92
++ G + K +R R + Q+L ++ NP ++ E
Sbjct: 88 EVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERET 147
Query: 93 IAQI---------------------TGLSKRVTQVWFQNSRARQK 116
+ + +++ WF N R +
Sbjct: 148 LVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 4e-08
Identities = 132/708 (18%), Positives = 189/708 (26%), Gaps = 280/708 (39%)
Query: 124 MKSSQNRP---KYG----YYPEPNKSFL---VIKPQF---LEEASLLF-HDLHVQIVTE- 168
M + RP +G P SF ++ QF L E + F D E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 169 -KRFLGGVIGNGDEKKNYVKEKVNQWIDCVKKLSEAAKKSPQAAF-SVVTKSLQC-EWAF 225
+FLG YV V S F V+ L E +
Sbjct: 61 VGKFLG-----------YVSSLVEP--------------SKVGQFDQVLNLCLTEFENCY 95
Query: 226 LQR------VVNHCQDEYIPL---REIIHSTLVPSIFEHEISSSEHE--LF--------H 266
L+ Q+ L +E+I + + I + LF
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 267 LPTRFGGLG-INDPVETAQHAFAVTSEKCKVLVDSLLKQEQLNLQEHNQCVKNAINTELV 325
L FGG G +D E + + T VLV L+K L E
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQ-TY---HVLVGDLIKFSAETLSE-------------- 197
Query: 326 RKETEYQEKQERILSSLPPAKQRVLTRIVEGQSSHWL---NVIPKSSDNFDLSPVQFRDA 382
L ++V T+ + WL + P D P+ +
Sbjct: 198 -------------LIRTTLDAEKVFTQGLNILE--WLENPSNTP-DKDYLLSIPI----S 237
Query: 383 LALRYNHGLKGLPTYCDGCGGEMSVTHALNCKKGGLVKHGHDYLRDECIMMASYAWNGIV 442
L G+ L Y VT K G G LR + A+ G+V
Sbjct: 238 CPL---IGVIQLAHYV--------VT----AKLLGF-TPGE--LRS-YLKGATGHSQGLV 278
Query: 443 KEPIMRDSSSTSPALIADFKINGVWEAGGTAFFDNRIVNADAPSYSSQTWNTIAKRHAQE 502
+ IA WE +FF + + A + + I R E
Sbjct: 279 -----------TAVAIA---ETDSWE----SFFVS-VRKA----ITVLFF--IGVR-CYE 312
Query: 503 KHLKYNTAAEDLRASF-------TP-LVCS--TDGAL---------HLEFHSFLKRIAL- 542
+ + L S +P L S T + HL + I+L
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLV 371
Query: 543 ------VLSEKWKKMYGHVLSWLRVRTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYI 596
V+S G S L ++L LR + P G D
Sbjct: 372 NGAKNLVVS-------GPPQS----------LYGLNLTLRKAK---APSGLD-------- 403
Query: 597 RVRILLKGRLSVLICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLST 656
+ RI F RK + F L
Sbjct: 404 QSRIP----------FSE------------------RKLKFSN----RF--------LPV 423
Query: 657 GEEFALHEDRVLCKSHYL----ELVDGGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQ 712
F H SH L +L++ D ++ S ++K V TF L+
Sbjct: 424 ASPF--H-------SHLLVPASDLIN-----KDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 713 VLQANFQLDSNPDGQDLERIA-QITGLSKRVTQVWFQNSRARQKKHLH 759
VL + ERI I V W Q K H
Sbjct: 470 VLSGS----------ISERIVDCII--RLPVK--W---ETTTQFKATH 500
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 51.1 bits (122), Expect = 4e-08
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 15/75 (20%)
Query: 612 FRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
R FG + G + G EF ++R++ +
Sbjct: 63 IRLFGNSGAGGSGGH--------------MGSGGDVMVVGEPTLMGGEFGDEDERLITRL 108
Query: 672 HYLELVDGGTTSSDD 686
+ D D+
Sbjct: 109 ENTQF-DAANGIDDE 122
Score = 50.4 bits (120), Expect = 8e-08
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYL 674
+C+ C IA ++ A D +H C C +C+ QL G +LC++ Y+
Sbjct: 5 WKRCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63
Query: 675 EL 676
L
Sbjct: 64 RL 65
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 50.0 bits (118), Expect = 5e-08
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 54 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDG----QDLERIAQITGLSKRVTQVWFQ 109
S S A + RT F++ L L+ + G + +E +A + + + W
Sbjct: 2 SSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIG 61
Query: 110 NSRARQKKHLHTGKMKSSQNRPKYG 134
N R + + M + P G
Sbjct: 62 NRRRKYR------LMGIEVSGPSSG 80
Score = 47.6 bits (112), Expect = 3e-07
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 693 SHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDG----QDLERIAQITGLSKRVTQVWFQ 748
S S A + RT F++ L L+ + G + +E +A + + + W
Sbjct: 2 SSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIG 61
Query: 749 NSRARQKK 756
N R + +
Sbjct: 62 NRRRKYRL 69
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 49.7 bits (118), Expect = 5e-08
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 614 SFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKS 671
S + C C + I + V +A + YH +C C C + + GEE L + +
Sbjct: 3 SGSSGCDSCEKYI--TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 49.7 bits (119), Expect = 6e-08
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCK-SHYLEL 676
KC KC + + ++ V + +H C CE C + L++G A HE + C Y +
Sbjct: 2 KCPKCDKEVYFAERV-TSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPCYSAM 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 7e-08
Identities = 82/604 (13%), Positives = 176/604 (29%), Gaps = 199/604 (32%)
Query: 118 HLHTGKMKSSQNRPKYGYYPEPNKSFLVIKPQFLEEASLLFHDLHVQIVTEKRFLGGVIG 177
H H M +Y Y V + F++ + + V + ++
Sbjct: 1 HHHHHHMDFETGEHQYQY----KDILSVFEDAFVD-------NFDCKDVQD--MPKSILS 47
Query: 178 NGDEKKNYVKEK--VNQ-----WIDCVKKLSEAAKKSPQAAFSVVTKSLQCEWAFL-QRV 229
+E + + K V+ W K+ E +K F V + L+ + FL +
Sbjct: 48 K-EEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQK-----F--VEEVLRINYKFLMSPI 98
Query: 230 VNHCQDEYIPLREIIHSTLVPSIFEHEISSSEHELFHLPTRFGGLGINDPVETAQHAFAV 289
+ PS+ L+ ND A++ V
Sbjct: 99 KTEQRQ--------------PSMMTRMYIEQRDRLY-----------NDNQVFAKYN--V 131
Query: 290 TSEKCKVLVDSLLKQEQLNLQEHNQCV--------KNAINTELVRKETEYQEKQERILSS 341
+ + L L+Q L L+ + K + ++ ++
Sbjct: 132 SRLQ-PYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--------SYKVQCK 179
Query: 342 LPPAKQRVLTRIVEGQSSHWLNVIPKSSDNFDLSPVQFRDALALRYNHGLKGLPTYCDGC 401
+ +I WLN+ +S L +Q L + + P +
Sbjct: 180 MD-------FKI------FWLNLKNCNSPETVLEMLQ---KLLYQID------PNWTSRS 217
Query: 402 GGEMSVTHALNCKKGGLVKHGHDYLRDECIMMASYAWNGIVKEPIMRDSSSTSPALIADF 461
++ ++ + LR + Y N ++ ++ + + +
Sbjct: 218 DHSSNIKLRIHSIQ--------AELRR-LLKSKPYE-NCLL---VLLN--------VQNA 256
Query: 462 KINGVWEAGGTAFFDNR--------------IVNADAPSYSSQTWNTIAKRHAQEKHL-- 505
K W A F+ ++A ++ S +++ + K L
Sbjct: 257 KA---WNA-----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 506 KY-NTAAEDLRA---SFTPLVCSTDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLRV 561
KY + +DL + P S L + WK HV ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAES---IRDGLATW-----DNWK----HVNCD-KL 355
Query: 562 RTEFSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRILLKG------RLSVL------ 609
T I+++ SL +++P + M+ R+ + LS++
Sbjct: 356 TT---IIES-SL------NVLEPAEYRK----MFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 610 ICFRSFGAKCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLC 669
K K + +++ + + + ++ E+ALH ++
Sbjct: 402 SDVMVVVNKLHK--YSLVEKQP-KESTISIPSI------YLELKVKLENEYALH-RSIV- 450
Query: 670 KSHY 673
HY
Sbjct: 451 -DHY 453
Score = 48.7 bits (115), Expect = 7e-06
Identities = 61/394 (15%), Positives = 118/394 (29%), Gaps = 112/394 (28%)
Query: 419 VKHGHDYLRDECIMMASYAWNGIVKEP-----------IMRDSSSTSPALIADF-----K 462
K D + +++ + I+ + ++ F +
Sbjct: 35 CKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQKFVEEVLR 88
Query: 463 INGVWEAGGTAF-FDNRIVNADAPSYSSQ---TWNT---IAKRHA--QEKHLKYNTAAED 513
IN + + + R + Y Q +N AK + + +LK A +
Sbjct: 89 INYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 514 LRASFTPLVCSTDGA----LHLEFHSFLKRIALVLSEK--WKKMYGHVLSWL---RVRTE 564
LR + L+ G+ + V KM + WL +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV----------ALDVCLSYKVQCKMDFKIF-WLNLKNCNSP 195
Query: 565 FSILKAVSLRLRGTRQIVKPYGFDDGAGLMYIRVRI-LLKGRLSVLICFRSFGAKCSKCC 623
++L+ + L QI + I++RI ++ L L+ + + + C
Sbjct: 196 ETVLEMLQKLLY---QIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPY-----ENC 246
Query: 624 RGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVDGGTTS 683
+ +V + + F L CK L+ TT
Sbjct: 247 LLVL---------LNVQNAKAW------------NAFNLS-----CKI----LL---TTR 273
Query: 684 SDDGADSESSHSKSK--AKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER---------I 732
D S+ + + T T ++++ L + LD P QDL R +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP--QDLPREVLTTNPRRL 330
Query: 733 AQITGLSKRVTQVWFQNSRARQKKHLHTGKMKSS 766
+ I + W N + L T ++SS
Sbjct: 331 SIIAESIRDGLATW-DNWKHVNCDKLTT-IIESS 362
Score = 44.1 bits (103), Expect = 2e-04
Identities = 72/429 (16%), Positives = 131/429 (30%), Gaps = 105/429 (24%)
Query: 21 TEEQLQVLQA-NFQLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQ----LQVL 75
E L++LQ +Q+D N +DH+ + S +R + L V
Sbjct: 195 PETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV- 249
Query: 76 QANFQLDSNPDGQDLERIAQ--------ITGLSKRVTQVWFQNSRARQKKHLHTGKMKSS 127
L + Q+ + +T K+VT A H+ S
Sbjct: 250 -----LL---NVQNAKAWNAFNLSCKILLTTRFKQVTDF----LSAATTTHI-------S 290
Query: 128 QNRPKYGYYPEPNKS----FLVIKPQFLEEASLLFHDLHVQIVTEKRFLGGVIGNGDEKK 183
+ P+ KS +L +PQ L L + + I+ E + + D K
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWK 348
Query: 184 NYVKEKVNQWID-CVKKLSEAAKKSPQAAFSV----V---TKSLQCEWAFL-----QRVV 230
+ +K+ I+ + L A + SV T L W + VV
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 231 NHCQD------EYIPLREIIHSTLVPSIFEHEISSSEH----ELFHLPTRFGGLGINDPV 280
N + I S + + E + H + +++P F + P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 281 E-------TAQHAFAVT-SEKC----KVLVD-SLLKQEQLNLQEHNQCVKNAINTEL--V 325
H + E+ V +D L+Q ++ +I L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQL 527
Query: 326 RKETEYQEKQERILSSLPPAKQRVLTRIVEGQSSHWLNVIPKSSDNFDLSP----VQFRD 381
+ Y + P +R++ I L+ +PK +N S ++
Sbjct: 528 KFYKPYICDND-------PKYERLVNAI--------LDFLPKIEENLICSKYTDLLR--- 569
Query: 382 ALALRYNHG 390
+AL
Sbjct: 570 -IALMAEDE 577
Score = 42.5 bits (99), Expect = 6e-04
Identities = 72/530 (13%), Positives = 133/530 (25%), Gaps = 184/530 (34%)
Query: 227 QRVVNHCQDEYIPLREIIHSTLVPSIFEHEISSSEHELFHLPTRFGGLGINDPVETAQHA 286
+ +++ +D ++ + V + + +S E + H+ + D V
Sbjct: 19 KDILSVFEDAFVDNFDCKD---VQDMPKSILSKEEID--HI------IMSKDAVSGTLRL 67
Query: 287 FAVTSEK----CKVLVDSLLKQEQLNLQE--HNQCVKNAINTELVRKETEYQEKQERILS 340
F K + V+ +L+ L + + ++ T Y E+++R+ +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR------MYIEQRDRLYN 121
Query: 341 SLPPAKQRVLTRIVEGQSSHWLNVIPKSSDNFDLSPV-QFRDAL-ALRYN-----HGLKG 393
+ ++R+ P + R AL LR G+ G
Sbjct: 122 DNQVFAKYNVSRL---------------------QPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 394 LPTYCDGCGGEMSVTHALNCKKGGLVKHGHDYLRDECIMMASYAWNGIVKEPIMRDSSST 453
G K + D +
Sbjct: 161 -------SG------------KTWVAL---DVCLSYKV---------------------- 176
Query: 454 SPALIADFKINGVWEAGGTAFFDNRIVNADAPSYSSQTWNTIAKRHAQEKHLKYNTAAED 513
D +I + W + ++ E L+ +
Sbjct: 177 ------------------QCKMDFKI-------F----WLNLKNCNSPETVLE---MLQK 204
Query: 514 LRASFTPLVCS---TDGALHLEFHSFLKRIALVLSEKWKKMYGHVLSWLR-VRTEFSILK 569
L P S + L HS + +L K Y + L L V+
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNA-KAWN 260
Query: 570 AVSLR---LRGTRQI-VKPYGFDDGAGLMYIRVRI--LLKG-----RLSVLICFRSFGAK 618
A +L L TR V D + + + S+L K
Sbjct: 261 AFNLSCKILLTTRFKQV----TDFLSAATTTHISLDHHSMTLTPDEVKSLL-------LK 309
Query: 619 CSKC---------CRG-------IASSDWVRKAR-DHVYHLACF----ACEACKRQLSTG 657
C IA S A D+ H+ C E+ L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 658 E------EFALHEDRVLCKSHYLELVDGGTTSSDDGADSESSHSKSKAKR 701
E ++ + L L+ SD H S ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Score = 35.6 bits (81), Expect = 0.077
Identities = 40/303 (13%), Positives = 90/303 (29%), Gaps = 77/303 (25%)
Query: 16 VRTTFTEEQLQVLQANF-----------QLDSNP---DGFGADSTDHTDSESSHSKSKAK 61
T T ++++ L + L +NP D + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 62 RVRTTFTEEQLQVLQAN-----------FQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 110
++ T E L VL+ F ++ I + ++ +WF
Sbjct: 354 KLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAH-----------IP--TILLSLIWFDV 399
Query: 111 SRARQKKHLHTGKMKSSQNR-PKYGYYPEPNKSFLVIKPQFLEEASLLFHDLHVQIVTEK 169
++ ++ S + PK P+ +L +K + E + LH IV
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYA-----LHRSIVDHY 453
Query: 170 RFLGGVIGNG---DEKKNYV-------------KEKVN---------QWIDCVKKLSEAA 204
+ Y E++ ++++ +K+ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDS 511
Query: 205 KKSPQAAFSVVTKSLQCEWAFLQRVVNHCQDEYIPLREIIHSTLVPSIFEHEISSSEHEL 264
+ A + +LQ + + ++ + I+ +P I E+ I S +L
Sbjct: 512 --TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIEENLICSKYTDL 567
Query: 265 FHL 267
+
Sbjct: 568 LRI 570
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 48.2 bits (115), Expect = 2e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLD---SNPDGQDLERIAQITGLSKRVTQVWFQNSR 112
S S ++ RT ++ QL LQ FQ + P+ +L A GL++ ++WFQN R
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL---AASLGLTQTQVKIWFQNKR 59
Query: 113 ARQKK 117
++ KK
Sbjct: 60 SKIKK 64
Score = 48.2 bits (115), Expect = 2e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLD---SNPDGQDLERIAQITGLSKRVTQVWFQNSR 751
S S ++ RT ++ QL LQ FQ + P+ +L A GL++ ++WFQN R
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL---AASLGLTQTQVKIWFQNKR 59
Query: 752 ARQKK 756
++ KK
Sbjct: 60 SKIKK 64
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 51.9 bits (123), Expect = 2e-07
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 21/98 (21%)
Query: 679 GGTTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI--- 735
+ D+ S + K +R R + Q+L + NP ++ E + +
Sbjct: 122 QQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNR 181
Query: 736 ------------------TGLSKRVTQVWFQNSRARQK 755
+++ WF N R +
Sbjct: 182 AECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219
Score = 51.9 bits (123), Expect = 2e-07
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 21/105 (20%)
Query: 33 QLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER 92
L D+ S + K +R R + Q+L + NP ++ E
Sbjct: 115 FLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREA 174
Query: 93 IAQI---------------------TGLSKRVTQVWFQNSRARQK 116
+ + +++ WF N R +
Sbjct: 175 LVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 49.3 bits (117), Expect = 3e-07
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYLEL 676
+C+ C IA ++ A D +H C C +C+ QL G +LC++ Y+ L
Sbjct: 63 RCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 46.9 bits (112), Expect = 3e-07
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
KR RT F+ EQL L+ F + + ++++ GL++ ++WF+N RA+ KK
Sbjct: 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
Score = 46.9 bits (112), Expect = 3e-07
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
KR RT F+ EQL L+ F + + ++++ GL++ ++WF+N RA+ KK
Sbjct: 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 48.1 bits (114), Expect = 4e-07
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 618 KCSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLS-TGEEFALHEDRVLCKSHYLEL 676
C C + I + KA D +H C +C+ C +L G R LC+ YL L
Sbjct: 5 TCGGCQQNIGDR-YFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 63
Score = 45.0 bits (106), Expect = 6e-06
Identities = 11/91 (12%), Positives = 23/91 (25%), Gaps = 21/91 (23%)
Query: 611 CFRSFGAKCSKCCRGIAS---------------SDWVRKARDHVYHLACFACEACKRQLS 655
C C C + D++R + +
Sbjct: 30 CL-----SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTL 84
Query: 656 TGEEFALHEDRVLCKSHYLELVDGGTTSSDD 686
G EF ++R++ + + D D+
Sbjct: 85 MGGEFGDEDERLITRLENTQF-DAANGIDDE 114
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 46.7 bits (111), Expect = 6e-07
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 53 SSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 112
S +K ++ R FT+ Q L+ F+ + E +A + L+ ++WFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 113 ARQKKHLHTGKMKSS 127
+ K+ + +
Sbjct: 62 YKTKRAQNEKGYEGH 76
Score = 46.7 bits (111), Expect = 6e-07
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 692 SSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSR 751
S +K ++ R FT+ Q L+ F+ + E +A + L+ ++WFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 752 ARQKKHLHTGKMKSS 766
+ K+ + +
Sbjct: 62 YKTKRAQNEKGYEGH 76
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 46.1 bits (110), Expect = 6e-07
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
+++RT F++ QL L+ FQ Q ++ ++ I LS + + WFQN R + K+
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Score = 46.1 bits (110), Expect = 6e-07
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
+++RT F++ QL L+ FQ Q ++ ++ I LS + + WFQN R + K+
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Score = 27.6 bits (62), Expect = 2.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 12 KAKRVRTTFTEEQLQVLQANFQ 33
+++RT F++ QL L+ FQ
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQ 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 46.3 bits (110), Expect = 7e-07
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S K + F+ +Q L+ F+ + +R+A++ LS+R + WFQN RA+
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 116 KK 117
++
Sbjct: 63 RR 64
Score = 46.3 bits (110), Expect = 7e-07
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S K + F+ +Q L+ F+ + +R+A++ LS+R + WFQN RA+
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 755 KK 756
++
Sbjct: 63 RR 64
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 46.8 bits (111), Expect = 8e-07
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 51 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 110
+ + K K+ RT+FT Q+ L+ F + +A+ ++ + WFQN
Sbjct: 8 PYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67
Query: 111 SRARQKKHLHTGKMKSSQ 128
R + ++ + Q
Sbjct: 68 RRTKWRRQTAEEREAERQ 85
Score = 46.8 bits (111), Expect = 8e-07
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 690 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQN 749
+ + K K+ RT+FT Q+ L+ F + +A+ ++ + WFQN
Sbjct: 8 PYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67
Query: 750 SRARQKKHLHTGKMKSSQ 767
R + ++ + Q
Sbjct: 68 RRTKWRRQTAEEREAERQ 85
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 47.1 bits (111), Expect = 8e-07
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI---------------------T 97
K +R R + Q+L ++ NP ++ E + +
Sbjct: 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSN 67
Query: 98 GLSKRVTQVWFQNSRARQKKH 118
+++ WF N R +
Sbjct: 68 LVTEVRVYNWFANRRKEEAFR 88
Score = 47.1 bits (111), Expect = 8e-07
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQI---------------------T 736
K +R R + Q+L ++ NP ++ E + +
Sbjct: 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSN 67
Query: 737 GLSKRVTQVWFQNSRARQKKH 757
+++ WF N R +
Sbjct: 68 LVTEVRVYNWFANRRKEEAFR 88
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 46.1 bits (109), Expect = 1e-06
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 684 SDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQ----LDSNPDGQDLERIAQITGLS 739
S + S + KR RT FT EQ + + A + D + ++R Q TG+
Sbjct: 2 SSGSSGSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVP 61
Query: 740 KRVTQVWFQNSRARQKK 756
++V +VW N++
Sbjct: 62 RQVLKVWLHNNKHSGPS 78
Score = 43.8 bits (103), Expect = 7e-06
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQ----LDSNPDGQDLERIAQITGLS 100
S+ + S + KR RT FT EQ + + A + D + ++R Q TG+
Sbjct: 2 SSGSSGSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVP 61
Query: 101 KRVTQVWFQNSRARQKK 117
++V +VW N++
Sbjct: 62 RQVLKVWLHNNKHSGPS 78
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 46.0 bits (109), Expect = 1e-06
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 32 FQLDSNPDGFGADSTDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQ 88
Q + + DG + S + R FT+E +++L++ F + D +
Sbjct: 3 TQKNKSADGLVFNVVTQDMINKSTKPYRGHR----FTKENVRILESWFAKNIENPYLDTK 58
Query: 89 DLERIAQITGLSKRVTQV--WFQNSRARQK 116
LE + + T LS+ Q+ W N R ++K
Sbjct: 59 GLENLMKNTSLSR--IQIKNWVSNRRRKEK 86
Score = 43.3 bits (102), Expect = 1e-05
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 681 TTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITG 737
++ +KS FT+E +++L++ F + D + LE + + T
Sbjct: 9 ADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTS 68
Query: 738 LSKRVTQV--WFQNSRARQK 755
LS+ Q+ W N R ++K
Sbjct: 69 LSR--IQIKNWVSNRRRKEK 86
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 45.7 bits (108), Expect = 2e-06
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGL 99
+ T S +RT FT QL L+ F + + L R IA L
Sbjct: 19 NPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFN-----KYLSRARRVEIAATLEL 73
Query: 100 SKRVTQVWFQNSRARQKK 117
++ ++WFQN R +QKK
Sbjct: 74 NETQVKIWFQNRRMKQKK 91
Score = 44.9 bits (106), Expect = 5e-06
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 681 TTSSDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQI 735
+ S +RT FT QL L+ F + + L R IA
Sbjct: 16 VKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFN-----KYLSRARRVEIAAT 70
Query: 736 TGLSKRVTQVWFQNSRARQKK 756
L++ ++WFQN R +QKK
Sbjct: 71 LELNETQVKIWFQNRRMKQKK 91
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 44.2 bits (105), Expect = 3e-06
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQKK 117
++ RT FT QL L+ F+ + + L++ TQV WFQN RA+ K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE--TQVKIWFQNRRAKAKR 57
Score = 44.2 bits (105), Expect = 3e-06
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQKK 756
++ RT FT QL L+ F+ + + L++ TQV WFQN RA+ K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTE--TQVKIWFQNRRAKAKR 57
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 44.7 bits (106), Expect = 3e-06
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 120
+R RTTFT Q+ L+ +F L ++ L ++WF+N R R K
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Query: 121 TGKMKS 126
K +S
Sbjct: 63 QHKDQS 68
Score = 44.7 bits (106), Expect = 3e-06
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKHLH 759
+R RTTFT Q+ L+ +F L ++ L ++WF+N R R K
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Query: 760 TGKMKS 765
K +S
Sbjct: 63 QHKDQS 68
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 43.5 bits (103), Expect = 5e-06
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVWFQNSRARQ 115
+R RT FT +QL L+ F + + R +A L + +VWFQN R +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKE-----NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56
Query: 116 KK 117
K+
Sbjct: 57 KR 58
Score = 43.5 bits (103), Expect = 5e-06
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVWFQNSRARQ 754
+R RT FT +QL L+ F + + R +A L + +VWFQN R +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKE-----NYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56
Query: 755 KK 756
K+
Sbjct: 57 KR 58
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 43.5 bits (103), Expect = 6e-06
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQKKH 118
++ R F++ Q+ L+ F+ + E +A + L+ TQV WFQN R + K+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTP--TQVKIWFQNHRYKMKRQ 60
Query: 119 LHTGKMK 125
+
Sbjct: 61 AKDKAAQ 67
Score = 43.5 bits (103), Expect = 6e-06
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQKKH 757
++ R F++ Q+ L+ F+ + E +A + L+ TQV WFQN R + K+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTP--TQVKIWFQNHRYKMKRQ 60
Query: 758 LHTGKMK 764
+
Sbjct: 61 AKDKAAQ 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 43.2 bits (102), Expect = 8e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 54 SHSKSKAKRVRTTFTEEQLQVLQANFQLDS-NPDGQDLERIAQITGLSKRVTQVWFQNSR 112
S S + E L+ F + PD + L+ +++ S R Q WF++ R
Sbjct: 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRR 61
Query: 113 ARQKK 117
+ K
Sbjct: 62 NQDKP 66
Score = 43.2 bits (102), Expect = 8e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 693 SHSKSKAKRVRTTFTEEQLQVLQANFQLDS-NPDGQDLERIAQITGLSKRVTQVWFQNSR 751
S S + E L+ F + PD + L+ +++ S R Q WF++ R
Sbjct: 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRR 61
Query: 752 ARQKK 756
+ K
Sbjct: 62 NQDKP 66
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 43.3 bits (102), Expect = 9e-06
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
+ ++ R +T+ QL+ L+ + + RI+ T LS+R +WFQN R ++
Sbjct: 3 HMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 62
Query: 116 KKHLHTGKMKS 126
KK ++ K S
Sbjct: 63 KKVINKLKTTS 73
Score = 43.3 bits (102), Expect = 9e-06
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
+ ++ R +T+ QL+ L+ + + RI+ T LS+R +WFQN R ++
Sbjct: 3 HMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 62
Query: 755 KKHLHTGKMKS 765
KK ++ K S
Sbjct: 63 KKVINKLKTTS 73
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 43.3 bits (102), Expect = 1e-05
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 48 HTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKR 102
H + + ++ + KR RT++T Q L+ F + + L R IA L++R
Sbjct: 16 HLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFN-----RYLTRRRRIEIAHALSLTER 70
Query: 103 VTQVWFQNSRARQKK 117
++WFQN R + KK
Sbjct: 71 QIKIWFQNRRMKWKK 85
Score = 41.8 bits (98), Expect = 5e-05
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 690 SESSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQ 744
+ + ++ + KR RT++T Q L+ F + + L R IA L++R +
Sbjct: 19 TSTVNANGETKRQRTSYTRYQTLELEKEFHFN-----RYLTRRRRIEIAHALSLTERQIK 73
Query: 745 VWFQNSRARQKK 756
+WFQN R + KK
Sbjct: 74 IWFQNRRMKWKK 85
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 43.0 bits (101), Expect = 1e-05
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 684 SDDGADSESSHSKSKAKRVRTTFTEEQLQVLQANFQ----LDSNPDGQDLERIAQITGLS 739
S + S S S KR RT FT EQ + + A + D +E+ TG+
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVR 61
Query: 740 KRVTQVWFQNSRARQKK 756
++V ++W N++
Sbjct: 62 RQVLKIWMHNNKNSGPS 78
Score = 40.7 bits (95), Expect = 1e-04
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 45 STDHTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQ----LDSNPDGQDLERIAQITGLS 100
S+ + S S S KR RT FT EQ + + A + D +E+ TG+
Sbjct: 2 SSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVR 61
Query: 101 KRVTQVWFQNSRARQKK 117
++V ++W N++
Sbjct: 62 RQVLKIWMHNNKNSGPS 78
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 42.3 bits (100), Expect = 2e-05
Identities = 11/67 (16%), Positives = 27/67 (40%)
Query: 58 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
+ + Q+ L+ F + +A+ L++ ++WFQN R + K+
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 118 HLHTGKM 124
+ ++
Sbjct: 62 KQLSSEL 68
Score = 42.3 bits (100), Expect = 2e-05
Identities = 11/67 (16%), Positives = 27/67 (40%)
Query: 697 SKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
+ + Q+ L+ F + +A+ L++ ++WFQN R + K+
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 757 HLHTGKM 763
+ ++
Sbjct: 62 KQLSSEL 68
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 42.5 bits (100), Expect = 2e-05
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 53 SSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVW 107
+ + +R R T+T Q L+ F + L R +A L++R ++W
Sbjct: 13 IAGTNGLRRRGRQTYTRYQTLELEKEFHTN-----HYLTRRRRIEMAHALSLTERQIKIW 67
Query: 108 FQNSRARQKK 117
FQN R + KK
Sbjct: 68 FQNRRMKLKK 77
Score = 42.5 bits (100), Expect = 2e-05
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 692 SSHSKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVW 746
+ + +R R T+T Q L+ F + L R +A L++R ++W
Sbjct: 13 IAGTNGLRRRGRQTYTRYQTLELEKEFHTN-----HYLTRRRRIEMAHALSLTERQIKIW 67
Query: 747 FQNSRARQKK 756
FQN R + KK
Sbjct: 68 FQNRRMKLKK 77
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQK 116
++ R F++ Q+ L+ F+ + +++A + L+ TQV WFQN R + K
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS--TQVKIWFQNRRYKSK 58
Score = 41.8 bits (99), Expect = 2e-05
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQV--WFQNSRARQK 755
++ R F++ Q+ L+ F+ + +++A + L+ TQV WFQN R + K
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTS--TQVKIWFQNRRYKSK 58
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
S S ++ R +++ QL+ L+ + + +I+ T LS+R +WFQN R ++
Sbjct: 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKE 62
Query: 116 KK 117
KK
Sbjct: 63 KK 64
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
S S ++ R +++ QL+ L+ + + +I+ T LS+R +WFQN R ++
Sbjct: 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKE 62
Query: 755 KK 756
KK
Sbjct: 63 KK 64
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 41.2 bits (97), Expect = 4e-05
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVWFQNSRA 113
KR RT +T QL L+ F + + + R +A + L++R ++WFQN R
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFN-----KYISRPRRVELAVMLNLTERHIKIWFQNRRM 56
Query: 114 RQKK 117
+ KK
Sbjct: 57 KWKK 60
Score = 41.2 bits (97), Expect = 4e-05
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLER-----IAQITGLSKRVTQVWFQNSRA 752
KR RT +T QL L+ F + + + R +A + L++R ++WFQN R
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFN-----KYISRPRRVELAVMLNLTERHIKIWFQNRRM 56
Query: 753 RQKK 756
+ KK
Sbjct: 57 KWKK 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 41.3 bits (97), Expect = 5e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRARQ 115
FT+E +++L++ F + D + LE + + T LS+ Q+ W RA++
Sbjct: 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR--IQIKNWVAARRAKE 60
Query: 116 KKH 118
K
Sbjct: 61 KTI 63
Score = 41.3 bits (97), Expect = 5e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRARQ 754
FT+E +++L++ F + D + LE + + T LS+ Q+ W RA++
Sbjct: 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR--IQIKNWVAARRAKE 60
Query: 755 KKH 757
K
Sbjct: 61 KTI 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 39.8 bits (93), Expect = 1e-04
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 615 FGAKCSKCCRGIASSDWVRKARDHVYHL--ACFACEACKRQLSTGEEFALHEDRVLCK 670
C C I + +H CF C C + L G++F E V C
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCS 57
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 39.8 bits (93), Expect = 1e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 619 CSKCCRGIASSDWVRKARDHVYHLACFACEACKRQLSTGEEFALHEDRVLCKSHYLELVD 678
C KC I ++ YH F C C ++L + + + C + ++
Sbjct: 18 CQKCHAIIDEQ--PLIFKNDPYHPDHFNCANCGKEL--TADARELKGELYCLPCHDKMGV 73
Query: 679 GGTTS 683
G +S
Sbjct: 74 SGPSS 78
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
++ R +T+ Q L+ F + +A++ L++R ++WFQN R +
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68
Query: 116 KK 117
KK
Sbjct: 69 KK 70
Score = 39.5 bits (92), Expect = 2e-04
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
++ R +T+ Q L+ F + +A++ L++R ++WFQN R +
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68
Query: 755 KK 756
KK
Sbjct: 69 KK 70
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 65 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 118
T+F+ Q+ L+ F + +A+ ++ + WFQN R + ++
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 704 TTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKKH 757
T+F+ Q+ L+ F + +A+ ++ + WFQN R + ++
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 38.9 bits (91), Expect = 3e-04
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 61 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 117
KR R T+T Q L+ F + + IA L++R ++WFQN R + KK
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59
Score = 38.9 bits (91), Expect = 3e-04
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 700 KRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQITGLSKRVTQVWFQNSRARQKK 756
KR R T+T Q L+ F + + IA L++R ++WFQN R + KK
Sbjct: 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 38.4 bits (90), Expect = 3e-04
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 58 SKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSR 112
S ++ ++L F + P + E +A+ G++ +QV WF N R
Sbjct: 1 SSGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV--SQVSNWFGNKR 58
Query: 113 ARQKK 117
R KK
Sbjct: 59 IRYKK 63
Score = 38.4 bits (90), Expect = 3e-04
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 697 SKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSR 751
S ++ ++L F + P + E +A+ G++ +QV WF N R
Sbjct: 1 SSGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV--SQVSNWFGNKR 58
Query: 752 ARQKK 756
R KK
Sbjct: 59 IRYKK 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 37.7 bits (88), Expect = 6e-04
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 67 FTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRARQKK 117
FT+E +++L++ F + D + LE + + T LS+ Q+ W N R ++K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR--IQIKNWVSNRRRKEKT 58
Score = 37.7 bits (88), Expect = 6e-04
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 706 FTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRARQKK 756
FT+E +++L++ F + D + LE + + T LS+ Q+ W N R ++K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR--IQIKNWVSNRRRKEKT 58
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 36.7 bits (85), Expect = 0.003
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 58 SKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSR 112
+E +Q+L+ P Q+ ++Q T LS QV WF N+R
Sbjct: 3 HHHHHHSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLST--LQVCNWFINAR 60
Query: 113 ARQKKHLHTGKMKSSQNRP 131
R + K
Sbjct: 61 RRLLPDMLRKDGKDPNQFT 79
Score = 36.3 bits (84), Expect = 0.004
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 697 SKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSR 751
+E +Q+L+ P Q+ ++Q T LS QV WF N+R
Sbjct: 3 HHHHHHSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLST--LQVCNWFINAR 60
Query: 752 ARQKKHLHTGKMKSSQN 768
R + K
Sbjct: 61 RRLLPDMLRKDGKDPNQ 77
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 35.8 bits (83), Expect = 0.004
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 60 AKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRAR 114
A+R R F ++ ++L F + P + E +A+ G++ V+QV WF N R R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT--VSQVSNWFGNKRIR 58
Query: 115 QKKHLHTGKMKSSQNR 130
KK++ GK + N
Sbjct: 59 YKKNI--GKFQEEANI 72
Score = 35.8 bits (83), Expect = 0.004
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 699 AKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRAR 753
A+R R F ++ ++L F + P + E +A+ G++ V+QV WF N R R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT--VSQVSNWFGNKRIR 58
Query: 754 QKKHLHTGKMKSSQN 768
KK++ GK + N
Sbjct: 59 YKKNI--GKFQEEAN 71
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 35.9 bits (83), Expect = 0.004
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 60 AKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRAR 114
A+R R F ++ ++L F + P + E +A+ G++ V+QV WF N R R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT--VSQVSNWFGNKRIR 58
Query: 115 QKKHLHTGKMKSSQNRPKYGYYPEPNKS 142
KK++ GK + N
Sbjct: 59 YKKNI--GKFQEEANIYAAKTAVTATNV 84
Score = 35.2 bits (81), Expect = 0.009
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 699 AKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQNSRAR 753
A+R R F ++ ++L F + P + E +A+ G++ V+QV WF N R R
Sbjct: 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGIT--VSQVSNWFGNKRIR 58
Query: 754 QKKHLHTGKMKSSQN 768
KK++ GK + N
Sbjct: 59 YKKNI--GKFQEEAN 71
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 35.9 bits (83), Expect = 0.004
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQN 110
S S K+ + E +++L+ P ++ + +++ T LS Q+ WF N
Sbjct: 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL--LQISNWFIN 60
Query: 111 SRARQKKHLHTGKMKSSQNRPKYG 134
+R R + + ++ + P G
Sbjct: 61 ARRRILPDMLQ-QRRNDPSGPSSG 83
Score = 35.1 bits (81), Expect = 0.008
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQN 749
S S K+ + E +++L+ P ++ + +++ T LS Q+ WF N
Sbjct: 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL--LQISNWFIN 60
Query: 750 SRARQKKHL 758
+R R +
Sbjct: 61 ARRRILPDM 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 35.2 bits (81), Expect = 0.005
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 57 KSKAKRVRTTFTEEQLQVLQANFQLDS-NPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 115
+ + +L+ F + +PD + LE +++ R Q WF+ R ++
Sbjct: 3 SGSSGTA------QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQE 56
Query: 116 KK 117
K
Sbjct: 57 KP 58
Score = 35.2 bits (81), Expect = 0.005
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 696 KSKAKRVRTTFTEEQLQVLQANFQLDS-NPDGQDLERIAQITGLSKRVTQVWFQNSRARQ 754
+ + +L+ F + +PD + LE +++ R Q WF+ R ++
Sbjct: 3 SGSSGTA------QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQE 56
Query: 755 KK 756
K
Sbjct: 57 KP 58
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 34.7 bits (80), Expect = 0.009
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQN 110
S S K R + V+++ P + ++IA T L+ QV WF N
Sbjct: 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL--LQVNNWFIN 60
Query: 111 SRARQKK 117
+R R +
Sbjct: 61 ARRRILQ 67
Score = 34.7 bits (80), Expect = 0.009
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSN---PDGQDLERIAQITGLSKRVTQV--WFQN 749
S S K R + V+++ P + ++IA T L+ QV WF N
Sbjct: 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL--LQVNNWFIN 60
Query: 750 SRARQKK 756
+R R +
Sbjct: 61 ARRRILQ 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 32.9 bits (74), Expect = 0.076
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 56 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIA----------------QITGL 99
S + R R + Q+L + NP ++ E + + GL
Sbjct: 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 61
Query: 100 -SKRVTQV----WFQNSRARQKKHLHTGKMKSSQNRP 131
S VT+V WF N R +++ M + +
Sbjct: 62 GSNLVTEVRVYNWFANRR-KEEAFRQKLAMDAYSSNS 97
Score = 32.2 bits (72), Expect = 0.14
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 695 SKSKAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIA----------------QITGL 738
S + R R + Q+L + NP ++ E + + GL
Sbjct: 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 61
Query: 739 -SKRVTQV----WFQNSRARQK 755
S VT+V WF N R +
Sbjct: 62 GSNLVTEVRVYNWFANRRKEEA 83
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 31.9 bits (73), Expect = 0.089
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 85 PDGQDLERIAQITGLSKRVTQV--WFQNSRARQKKHLHTGKMKSSQNR 130
P + +++AQ TGL+ QV WF N+R R + M NR
Sbjct: 26 PSEEQKKQLAQDTGLTI--LQVNNWFINARRRIVQ-----PMIDQSNR 66
Score = 31.9 bits (73), Expect = 0.091
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 724 PDGQDLERIAQITGLSKRVTQV--WFQNSRARQKK 756
P + +++AQ TGL+ QV WF N+R R +
Sbjct: 26 PSEEQKKQLAQDTGLTI--LQVNNWFINARRRIVQ 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.47
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 22 EEQ-LQVLQANFQL---DSNP 38
E+Q L+ LQA+ +L DS P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
Score = 31.5 bits (70), Expect = 0.47
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 69 EEQ-LQVLQANFQL---DSNP 85
E+Q L+ LQA+ +L DS P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
Score = 31.5 bits (70), Expect = 0.47
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 708 EEQ-LQVLQANFQL---DSNP 724
E+Q L+ LQA+ +L DS P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
Score = 30.7 bits (68), Expect = 0.99
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 188 EKVNQWIDCVKKLSEAAKK-SPQAAFSVVTKS 218
EK Q + KKL + K + +A ++ K+
Sbjct: 18 EK--QAL---KKLQASLKLYADDSAPALAIKA 44
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth
muscle, myosin subfragment 2, heavy meromyosin,
essential light chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 30.4 bits (69), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 4 SESSHSKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGF 41
S+ ++ V FT+ Q+Q + FQL D + DGF
Sbjct: 35 SQKRRAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGF 73
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 679 GGTTSSDDGADSESSHSKSKAKR----VRTTFTEEQLQVLQANFQL-DSNPDG 726
G + + K +A+R V FT+ Q+Q + FQL D + DG
Sbjct: 20 EGGDAPAAPPAPKPPSQKRRAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDG 72
Score = 29.2 bits (66), Expect = 4.2
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 51 SESSHSKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDG 87
S+ ++ V FT+ Q+Q + FQL D + DG
Sbjct: 35 SQKRRAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDG 72
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 29.7 bits (67), Expect = 2.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 65 TTFTEEQLQVLQANF-QLDSNPDG----QDLERIAQITG--LSKRVTQVWFQN 110
T F+ Q+ L + F LD +G +D +RI ++ L R+ +F
Sbjct: 21 TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSE 73
Score = 29.7 bits (67), Expect = 2.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 704 TTFTEEQLQVLQANF-QLDSNPDG----QDLERIAQITG--LSKRVTQVWFQN 749
T F+ Q+ L + F LD +G +D +RI ++ L R+ +F
Sbjct: 21 TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSE 73
Score = 28.2 bits (63), Expect = 7.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 18 TTFTEEQLQVLQANF-QLDSNPDGF 41
T F+ Q+ L + F LD +G
Sbjct: 21 TGFSHSQITRLYSRFTSLDKGENGT 45
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle;
rigor-like, squid, contractIle protein; 2.60A
{Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B*
3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 29.0 bits (66), Expect = 3.7
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 11 SKAKRVRTTFTEEQLQVLQANFQL-DSNPDGF 41
++ R ++ Q+Q L+ F + D + DGF
Sbjct: 1 AEEAPRRVKLSQRQMQELKEAFTMIDQDRDGF 32
Score = 27.5 bits (62), Expect = 10.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 58 SKAKRVRTTFTEEQLQVLQANFQL-DSNPDG 87
++ R ++ Q+Q L+ F + D + DG
Sbjct: 1 AEEAPRRVKLSQRQMQELKEAFTMIDQDRDG 31
Score = 27.5 bits (62), Expect = 10.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 697 SKAKRVRTTFTEEQLQVLQANFQL-DSNPDG 726
++ R ++ Q+Q L+ F + D + DG
Sbjct: 1 AEEAPRRVKLSQRQMQELKEAFTMIDQDRDG 31
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 28.6 bits (65), Expect = 4.4
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 9 SKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGF 41
+ A V T ++Q+Q ++ F + D + DGF
Sbjct: 1 ADKAASGVLTKLPQKQIQEMKEAFSMIDVDRDGF 34
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 29.1 bits (64), Expect = 6.4
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 616 GAKCSKCCRGIASSDWVRKARDHVYHLACFACEAC 650
G C KC + + W + + H + AC A
Sbjct: 296 GPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAA 330
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.9 bits (63), Expect = 7.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 4 SESSHSKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGF 41
+ + V + F E +++ + F + D N DG
Sbjct: 3 KAKRRAAEGSSNVFSMFDETEIEDFKEAFTVIDQNADGI 41
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium
binding, ME binding protein-toxin complex; 2.20A
{Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 48 HTDSESSHSKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGQ 88
+ ++ K+ R TEEQ Q ++ F L D++ G
Sbjct: 3 YKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGT 44
Score = 27.9 bits (63), Expect = 8.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 6 SSHSKSKAKRVRTTFTEEQLQVLQANFQL-DSNPDGF 41
++ K+ R TEEQ Q ++ F L D++ G
Sbjct: 8 VVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGT 44
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 28.2 bits (63), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 64 RTTFTEEQLQVLQANFQ-LDSNPDG----QDLERI 93
T F++ L L F+ LD N G DL++I
Sbjct: 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI 54
Score = 28.2 bits (63), Expect = 8.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 703 RTTFTEEQLQVLQANFQ-LDSNPDG----QDLERI 732
T F++ L L F+ LD N G DL++I
Sbjct: 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI 54
Score = 28.2 bits (63), Expect = 8.4
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 RTTFTEEQLQVLQANFQ-LDSNPDGF 41
T F++ L L F+ LD N G+
Sbjct: 20 ETGFSQASLLRLHHRFRALDRNKKGY 45
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Length = 148
Score = 27.6 bits (61), Expect = 9.6
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 59 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT 97
+ K + ++E +++V +A P + IA +T
Sbjct: 13 QMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLT 51
Score = 27.6 bits (61), Expect = 9.6
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 698 KAKRVRTTFTEEQLQVLQANFQLDSNPDGQDLERIAQIT 736
+ K + ++E +++V +A P + IA +T
Sbjct: 13 QMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLT 51
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.50A {Geobacillus stearothermophilus}
Length = 202
Score = 27.9 bits (61), Expect = 10.0
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 38 PDGFGADSTDHT-DSESSHSKSKAKRVRTT-FTEEQLQVLQANFQLDSNPDGQDLERIAQ 95
P + + T + + H + + + L + ++ +
Sbjct: 83 PSWYETNQAVPTWNYVAVHVYGNVELINDQGEVMQSLHDMVEKYEAPGSRYQLSEVDAGM 142
Query: 96 ITGLSKRVTQVWFQNSRARQKKHLHTGKMKSSQNRPK 132
++G++K + R GK K SQN P
Sbjct: 143 LSGMNKGIQAFKIIIKRI-------EGKAKLSQNHPA 172
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.388
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,475,314
Number of extensions: 684642
Number of successful extensions: 1847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 282
Length of query: 768
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 667
Effective length of database: 3,881,772
Effective search space: 2589141924
Effective search space used: 2589141924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)