Query psy17257
Match_columns 778
No_of_seqs 492 out of 3010
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:21:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3665|consensus 100.0 2.9E-75 6.3E-80 677.9 36.9 655 11-776 2-679 (699)
2 PLN00113 leucine-rich repeat r 99.4 3.9E-12 8.4E-17 159.0 14.4 228 86-368 69-297 (968)
3 PLN00113 leucine-rich repeat r 99.3 4.3E-12 9.3E-17 158.6 13.4 245 86-368 118-369 (968)
4 cd00116 LRR_RI Leucine-rich re 99.2 3.2E-11 6.8E-16 130.8 12.1 199 76-325 15-235 (319)
5 cd00116 LRR_RI Leucine-rich re 99.2 3.1E-11 6.7E-16 130.9 11.6 195 86-328 81-295 (319)
6 KOG3207|consensus 99.2 4.7E-11 1E-15 127.7 8.8 190 86-324 121-314 (505)
7 KOG4194|consensus 99.2 6.6E-12 1.4E-16 137.8 1.8 241 86-367 173-428 (873)
8 KOG2120|consensus 99.1 2.1E-11 4.6E-16 124.3 2.5 116 196-322 257-374 (419)
9 KOG4341|consensus 99.1 3.4E-11 7.3E-16 128.2 4.0 241 86-367 138-384 (483)
10 KOG2120|consensus 99.1 7E-11 1.5E-15 120.6 5.5 177 87-315 211-391 (419)
11 KOG4341|consensus 99.1 3.2E-11 7E-16 128.4 2.5 80 71-151 150-232 (483)
12 KOG4194|consensus 99.1 5.8E-11 1.3E-15 130.5 2.8 203 50-288 73-281 (873)
13 KOG1909|consensus 99.0 5.1E-10 1.1E-14 117.1 5.8 230 86-368 58-311 (382)
14 KOG0444|consensus 98.9 7.2E-11 1.6E-15 130.2 -1.8 91 51-148 45-139 (1255)
15 KOG0444|consensus 98.8 1.4E-10 2.9E-15 128.1 -4.1 200 86-325 150-353 (1255)
16 KOG3665|consensus 98.8 2.9E-07 6.3E-12 108.9 22.7 324 108-523 59-402 (699)
17 KOG1909|consensus 98.8 1.5E-08 3.2E-13 106.3 8.9 220 86-367 30-282 (382)
18 PF14580 LRR_9: Leucine-rich r 98.8 8.1E-09 1.8E-13 101.4 6.3 105 197-318 40-147 (175)
19 PLN03210 Resistant to P. syrin 98.7 5.2E-08 1.1E-12 123.3 12.2 239 85-366 633-880 (1153)
20 PF14580 LRR_9: Leucine-rich r 98.7 1.4E-08 3.1E-13 99.7 5.4 130 108-286 18-150 (175)
21 PLN03210 Resistant to P. syrin 98.7 9.2E-08 2E-12 121.1 11.7 197 86-323 611-814 (1153)
22 PRK15387 E3 ubiquitin-protein 98.6 9.5E-08 2.1E-12 113.6 10.3 117 226-369 343-459 (788)
23 KOG0618|consensus 98.6 2.6E-09 5.6E-14 123.7 -2.8 107 196-322 380-487 (1081)
24 KOG3207|consensus 98.5 1.7E-08 3.6E-13 108.5 -0.1 243 46-367 64-313 (505)
25 KOG0618|consensus 98.5 1.5E-08 3.3E-13 117.5 -0.9 150 110-321 360-510 (1081)
26 KOG0617|consensus 98.4 5.9E-09 1.3E-13 98.8 -6.0 154 108-324 32-186 (264)
27 PRK15370 E3 ubiquitin-protein 98.4 3.8E-07 8.2E-12 109.0 5.8 55 86-148 220-275 (754)
28 PRK15370 E3 ubiquitin-protein 98.3 8.5E-07 1.8E-11 106.0 8.0 98 199-324 262-359 (754)
29 PRK15387 E3 ubiquitin-protein 98.3 5.8E-07 1.3E-11 107.0 6.3 57 86-148 242-315 (788)
30 KOG0617|consensus 98.3 1E-08 2.2E-13 97.3 -8.3 152 86-288 33-185 (264)
31 PLN03200 cellulose synthase-in 98.2 4.3E-05 9.2E-10 98.0 19.4 326 423-777 98-459 (2102)
32 KOG1947|consensus 98.2 2E-06 4.3E-11 98.6 6.8 92 196-288 266-374 (482)
33 PLN03200 cellulose synthase-in 98.2 5.8E-05 1.3E-09 96.8 19.8 211 532-777 72-287 (2102)
34 KOG1259|consensus 98.2 5.2E-07 1.1E-11 92.7 1.4 108 196-324 304-412 (490)
35 KOG1259|consensus 98.2 6.8E-07 1.5E-11 91.8 1.6 127 109-288 284-411 (490)
36 KOG2982|consensus 98.1 8.6E-06 1.9E-10 84.0 9.0 108 87-236 46-157 (418)
37 KOG0472|consensus 98.1 8.8E-07 1.9E-11 94.4 1.8 112 193-324 429-541 (565)
38 KOG1947|consensus 98.1 5.9E-06 1.3E-10 94.7 8.8 170 108-326 242-442 (482)
39 KOG1859|consensus 98.1 2.2E-07 4.8E-12 105.1 -3.8 109 196-324 184-292 (1096)
40 COG5238 RNA1 Ran GTPase-activa 98.1 2.9E-05 6.3E-10 79.2 10.8 197 86-330 30-261 (388)
41 KOG0166|consensus 98.0 0.00084 1.8E-08 75.6 22.2 340 395-777 75-470 (514)
42 cd00020 ARM Armadillo/beta-cat 98.0 2.6E-05 5.5E-10 71.2 8.7 115 559-682 5-120 (120)
43 KOG0472|consensus 97.9 5.6E-06 1.2E-10 88.5 2.8 166 71-288 373-540 (565)
44 KOG4237|consensus 97.9 1.4E-06 3E-11 92.9 -2.7 90 50-147 62-152 (498)
45 PLN03150 hypothetical protein; 97.7 6.7E-05 1.5E-09 89.1 8.8 108 200-323 419-527 (623)
46 PF13855 LRR_8: Leucine rich r 97.7 2.2E-05 4.8E-10 63.2 3.2 15 308-322 46-60 (61)
47 COG4886 Leucine-rich repeat (L 97.7 3.2E-05 7E-10 86.8 5.3 107 197-325 184-291 (394)
48 KOG2123|consensus 97.6 1.5E-05 3.2E-10 81.6 0.8 106 197-317 17-123 (388)
49 KOG2982|consensus 97.6 0.00011 2.3E-09 76.2 6.1 129 194-326 66-214 (418)
50 COG4886 Leucine-rich repeat (L 97.5 7.7E-05 1.7E-09 83.7 5.0 129 196-366 160-288 (394)
51 PF13855 LRR_8: Leucine rich r 97.5 5.2E-05 1.1E-09 61.0 2.6 59 225-288 1-61 (61)
52 PLN03150 hypothetical protein; 97.5 0.00024 5.2E-09 84.4 8.7 86 226-325 419-504 (623)
53 KOG1644|consensus 97.3 0.00026 5.6E-09 69.8 4.0 87 196-286 61-150 (233)
54 KOG1859|consensus 97.2 3.7E-05 8.1E-10 87.7 -2.3 106 199-326 164-269 (1096)
55 COG5238 RNA1 Ran GTPase-activa 97.2 0.0014 2.9E-08 67.4 8.7 231 86-367 58-315 (388)
56 PF12799 LRR_4: Leucine Rich r 97.1 0.00057 1.2E-08 51.1 3.9 42 199-247 1-42 (44)
57 PF05804 KAP: Kinesin-associat 97.1 0.0076 1.7E-07 71.5 14.8 197 533-771 264-460 (708)
58 KOG2739|consensus 97.0 0.00017 3.7E-09 73.8 0.4 67 196-264 62-128 (260)
59 KOG2739|consensus 96.8 0.00054 1.2E-08 70.2 2.1 108 196-318 40-150 (260)
60 KOG0166|consensus 96.8 0.04 8.7E-07 62.4 17.0 301 436-774 76-417 (514)
61 KOG0531|consensus 96.8 0.00044 9.6E-09 78.2 1.3 107 196-324 92-199 (414)
62 KOG4224|consensus 96.8 0.0083 1.8E-07 63.7 10.2 302 423-774 207-518 (550)
63 KOG1644|consensus 96.7 0.0014 3.1E-08 64.6 4.0 111 198-324 41-153 (233)
64 PF05804 KAP: Kinesin-associat 96.7 0.033 7.1E-07 66.2 16.0 227 532-774 304-543 (708)
65 PF04826 Arm_2: Armadillo-like 96.7 0.039 8.4E-07 57.9 14.8 217 514-777 16-246 (254)
66 KOG0532|consensus 96.7 0.00014 3E-09 81.3 -3.5 105 200-326 144-249 (722)
67 KOG0531|consensus 96.7 0.00047 1E-08 78.0 0.3 35 278-324 234-268 (414)
68 KOG4308|consensus 96.7 0.00018 4E-09 81.9 -3.0 194 88-328 89-307 (478)
69 PF12799 LRR_4: Leucine Rich r 96.7 0.002 4.3E-08 48.2 3.6 35 226-265 2-37 (44)
70 PF03224 V-ATPase_H_N: V-ATPas 96.5 0.03 6.6E-07 60.8 13.2 171 532-775 119-294 (312)
71 KOG4224|consensus 96.5 0.019 4.1E-07 61.1 10.7 231 532-775 140-387 (550)
72 cd00020 ARM Armadillo/beta-cat 96.5 0.036 7.7E-07 50.2 11.3 100 532-639 21-120 (120)
73 KOG3864|consensus 96.4 0.0028 6E-08 62.7 3.9 65 86-150 101-166 (221)
74 KOG4658|consensus 96.0 0.0073 1.6E-07 74.0 5.5 109 196-322 542-653 (889)
75 KOG1048|consensus 96.0 0.06 1.3E-06 63.0 12.5 236 532-777 247-579 (717)
76 KOG4237|consensus 95.8 0.0049 1.1E-07 66.5 2.3 97 214-326 263-361 (498)
77 KOG4658|consensus 95.8 0.0085 1.8E-07 73.4 4.6 113 193-321 565-678 (889)
78 KOG4579|consensus 95.6 0.0035 7.6E-08 58.3 0.4 108 200-324 28-136 (177)
79 KOG2122|consensus 95.5 0.15 3.4E-06 62.9 13.1 140 539-684 415-561 (2195)
80 KOG4199|consensus 95.3 2.3 5E-05 45.5 19.5 295 401-771 122-423 (461)
81 PF00514 Arm: Armadillo/beta-c 95.1 0.035 7.6E-07 40.6 4.2 40 597-638 1-40 (41)
82 PRK15386 type III secretion pr 94.8 0.081 1.8E-06 58.8 7.9 21 373-393 235-256 (426)
83 KOG0532|consensus 94.7 0.0043 9.4E-08 69.7 -2.4 129 196-368 118-247 (722)
84 PF10508 Proteasom_PSMB: Prote 94.6 1.4 3E-05 51.2 17.7 179 466-664 74-256 (503)
85 KOG2123|consensus 94.5 0.0078 1.7E-07 62.2 -0.9 81 196-282 38-123 (388)
86 KOG3864|consensus 94.3 0.019 4.1E-07 57.0 1.2 84 201-287 103-187 (221)
87 KOG4308|consensus 94.0 0.0072 1.6E-07 69.1 -2.6 195 86-324 115-331 (478)
88 smart00185 ARM Armadillo/beta- 93.8 0.11 2.4E-06 37.4 4.4 39 598-638 2-40 (41)
89 KOG4199|consensus 93.7 6.5 0.00014 42.2 18.6 197 424-639 189-403 (461)
90 PRK15386 type III secretion pr 93.6 0.16 3.5E-06 56.5 7.1 74 196-288 49-124 (426)
91 KOG2160|consensus 93.4 11 0.00024 40.8 20.3 170 532-707 138-309 (342)
92 KOG4579|consensus 93.4 0.025 5.3E-07 52.8 0.2 85 196-288 50-135 (177)
93 smart00367 LRR_CC Leucine-rich 92.0 0.17 3.8E-06 33.0 2.9 24 108-131 1-24 (26)
94 COG5064 SRP1 Karyopherin (impo 90.8 18 0.00038 39.0 17.4 151 593-774 270-424 (526)
95 PF01602 Adaptin_N: Adaptin N 89.5 15 0.00032 42.7 18.0 102 423-545 74-179 (526)
96 KOG1410|consensus 89.3 30 0.00064 40.6 18.7 236 439-709 52-309 (1082)
97 PF03224 V-ATPase_H_N: V-ATPas 88.5 26 0.00057 37.9 17.9 107 532-642 164-272 (312)
98 KOG1222|consensus 88.5 4.6 9.9E-05 45.1 11.5 154 505-684 259-415 (791)
99 COG5064 SRP1 Karyopherin (impo 88.4 2.7 5.9E-05 44.9 9.4 182 559-777 112-298 (526)
100 KOG1241|consensus 87.7 21 0.00045 42.4 16.6 283 423-732 405-706 (859)
101 PF10508 Proteasom_PSMB: Prote 87.4 18 0.00039 42.1 16.6 181 511-713 78-259 (503)
102 KOG1020|consensus 87.3 27 0.00058 44.7 18.1 186 456-678 898-1105(1692)
103 KOG3763|consensus 87.0 0.43 9.3E-06 54.2 2.7 99 218-324 211-312 (585)
104 PF04826 Arm_2: Armadillo-like 86.8 1.7 3.6E-05 45.7 6.9 153 600-763 4-175 (254)
105 PRK14707 hypothetical protein; 85.6 1.5E+02 0.0032 39.9 24.6 310 381-716 118-435 (2710)
106 smart00367 LRR_CC Leucine-rich 83.6 1.1 2.4E-05 29.1 2.4 23 198-220 1-23 (26)
107 PRK09687 putative lyase; Provi 83.4 7.7 0.00017 41.4 10.2 92 650-751 89-189 (280)
108 KOG3763|consensus 83.1 1.5 3.2E-05 50.0 4.7 83 196-282 215-307 (585)
109 KOG0414|consensus 83.0 29 0.00064 43.2 15.5 104 377-500 885-990 (1251)
110 PF13516 LRR_6: Leucine Rich r 82.8 1 2.3E-05 28.5 2.0 21 109-130 2-22 (24)
111 KOG0168|consensus 81.9 48 0.001 40.0 16.2 70 386-456 169-242 (1051)
112 PF11701 UNC45-central: Myosin 81.9 40 0.00087 32.5 13.7 146 514-678 7-155 (157)
113 PF13504 LRR_7: Leucine rich r 81.8 0.99 2.1E-05 26.3 1.5 14 225-238 1-14 (17)
114 PF05536 Neurochondrin: Neuroc 81.7 1.1E+02 0.0024 36.0 19.6 322 421-771 95-458 (543)
115 PF13516 LRR_6: Leucine Rich r 81.4 1.1 2.3E-05 28.5 1.7 19 199-218 2-20 (24)
116 cd00256 VATPase_H VATPase_H, r 78.9 83 0.0018 35.7 16.6 242 440-777 158-409 (429)
117 KOG4500|consensus 77.3 27 0.00058 39.0 11.5 142 534-682 240-390 (604)
118 PF08045 CDC14: Cell division 75.0 8.2 0.00018 40.4 6.9 80 546-629 118-197 (257)
119 PF00514 Arm: Armadillo/beta-c 73.9 4 8.6E-05 29.6 3.1 38 643-682 4-41 (41)
120 PRK14707 hypothetical protein; 72.9 2.4E+02 0.0052 38.2 19.6 269 385-716 332-602 (2710)
121 PF06371 Drf_GBD: Diaphanous G 72.2 5.6 0.00012 39.3 4.8 83 597-681 96-186 (187)
122 PF13513 HEAT_EZ: HEAT-like re 71.8 6.8 0.00015 30.2 4.2 54 625-680 2-55 (55)
123 smart00368 LRR_RI Leucine rich 70.0 4.2 9.1E-05 27.0 2.2 22 199-221 2-23 (28)
124 PF00560 LRR_1: Leucine Rich R 68.3 2.9 6.3E-05 26.0 1.1 13 226-238 1-13 (22)
125 KOG1788|consensus 68.2 31 0.00067 42.4 10.0 75 581-662 657-731 (2799)
126 smart00368 LRR_RI Leucine rich 67.7 6.6 0.00014 26.1 2.8 21 110-131 3-23 (28)
127 PF13646 HEAT_2: HEAT repeats; 66.8 35 0.00075 28.7 8.1 87 610-745 1-87 (88)
128 PF05536 Neurochondrin: Neuroc 64.4 84 0.0018 36.9 13.0 139 532-684 71-215 (543)
129 PF07814 WAPL: Wings apart-lik 60.9 66 0.0014 35.7 10.8 89 553-642 257-358 (361)
130 PF13306 LRR_5: Leucine rich r 60.4 15 0.00033 33.3 4.9 14 221-234 54-67 (129)
131 PF09759 Atx10homo_assoc: Spin 60.3 5.4 0.00012 35.6 1.7 33 733-765 42-76 (102)
132 KOG0946|consensus 60.1 2.3E+02 0.0049 34.4 14.9 175 424-638 61-240 (970)
133 PF10165 Ric8: Guanine nucleot 56.7 3.5E+02 0.0077 30.9 17.7 278 389-679 1-358 (446)
134 smart00370 LRR Leucine-rich re 55.2 9.4 0.0002 24.5 1.8 15 224-238 1-15 (26)
135 smart00369 LRR_TYP Leucine-ric 55.2 9.4 0.0002 24.5 1.8 15 224-238 1-15 (26)
136 PF01602 Adaptin_N: Adaptin N 54.3 3.9E+02 0.0085 30.7 22.4 150 584-754 322-487 (526)
137 PF11841 DUF3361: Domain of un 54.2 40 0.00088 32.6 6.6 72 561-637 58-129 (160)
138 smart00365 LRR_SD22 Leucine-ri 52.8 8.5 0.00018 25.3 1.3 15 224-238 1-15 (26)
139 KOG4535|consensus 52.3 2.3E+02 0.0049 32.4 12.6 81 602-684 476-561 (728)
140 smart00185 ARM Armadillo/beta- 50.9 16 0.00034 25.8 2.7 31 719-750 11-41 (41)
141 cd00256 VATPase_H VATPase_H, r 50.4 2.8E+02 0.0062 31.5 13.6 127 623-775 157-288 (429)
142 PF12031 DUF3518: Domain of un 50.0 68 0.0015 33.2 7.8 67 500-574 161-229 (257)
143 PHA00679 hypothetical protein 47.9 13 0.00028 28.7 1.7 38 669-709 6-43 (71)
144 PF11701 UNC45-central: Myosin 45.6 48 0.001 32.0 5.8 137 607-776 2-140 (157)
145 PF12530 DUF3730: Protein of u 44.9 2.5E+02 0.0055 29.0 11.5 105 622-754 13-117 (234)
146 KOG4500|consensus 44.7 58 0.0013 36.4 6.7 219 551-775 73-367 (604)
147 PF13306 LRR_5: Leucine rich r 44.4 31 0.00066 31.3 4.2 81 196-286 9-91 (129)
148 KOG2122|consensus 41.2 3.1E+02 0.0066 35.9 12.6 177 423-638 234-422 (2195)
149 KOG1048|consensus 40.7 2.5E+02 0.0054 33.9 11.6 117 532-652 580-697 (717)
150 KOG1062|consensus 39.5 8E+02 0.017 30.0 17.6 49 404-457 160-210 (866)
151 PF03810 IBN_N: Importin-beta 39.5 64 0.0014 26.4 5.0 54 650-706 13-75 (77)
152 KOG4242|consensus 38.8 96 0.0021 35.3 7.4 22 307-328 436-457 (553)
153 PF14938 SNAP: Soluble NSF att 38.7 30 0.00066 36.8 3.6 116 607-725 132-266 (282)
154 COG5231 VMA13 Vacuolar H+-ATPa 38.6 3.6E+02 0.0077 29.3 11.1 179 544-777 217-412 (432)
155 smart00638 LPD_N Lipoprotein N 38.4 5.5E+02 0.012 30.3 14.5 134 610-755 359-514 (574)
156 PF07814 WAPL: Wings apart-lik 37.3 1.5E+02 0.0032 32.9 8.9 162 610-774 23-216 (361)
157 COG5099 RNA-binding protein of 34.7 8E+02 0.017 30.3 14.9 232 423-683 501-744 (777)
158 PF04063 DUF383: Domain of unk 34.5 3.2E+02 0.0068 27.4 9.8 90 561-652 52-145 (192)
159 PF07723 LRR_2: Leucine Rich R 33.8 34 0.00073 22.4 1.8 26 200-225 1-26 (26)
160 KOG1991|consensus 33.2 1.1E+03 0.023 29.7 16.9 210 417-640 495-712 (1010)
161 KOG0212|consensus 31.9 8.9E+02 0.019 28.5 13.6 190 441-662 265-461 (675)
162 KOG1293|consensus 30.9 4.4E+02 0.0096 31.3 11.2 119 557-684 415-535 (678)
163 PF11841 DUF3361: Domain of un 30.3 2.7E+02 0.0058 27.1 8.1 84 602-685 5-92 (160)
164 PF02985 HEAT: HEAT repeat; I 29.6 79 0.0017 21.2 3.2 28 653-682 2-29 (31)
165 PRK09687 putative lyase; Provi 28.9 6.4E+02 0.014 26.8 11.7 59 610-682 25-83 (280)
166 PF12717 Cnd1: non-SMC mitotic 28.9 1.1E+02 0.0023 30.1 5.5 60 624-689 2-61 (178)
167 PF06025 DUF913: Domain of Unk 28.4 61 0.0013 36.2 3.9 22 597-618 350-371 (379)
168 smart00364 LRR_BAC Leucine-ric 28.2 31 0.00066 22.7 0.9 14 225-238 2-15 (26)
169 PTZ00429 beta-adaptin; Provisi 27.9 1.2E+03 0.026 28.6 18.4 25 725-750 261-285 (746)
170 COG5098 Chromosome condensatio 27.4 3.2E+02 0.007 32.7 9.3 140 378-549 859-1004(1128)
171 KOG2025|consensus 27.3 1.2E+03 0.026 28.3 21.1 196 424-644 122-363 (892)
172 KOG4242|consensus 27.2 75 0.0016 36.1 4.2 34 114-148 192-227 (553)
173 KOG1241|consensus 27.2 1.2E+03 0.026 28.4 16.5 271 386-681 170-476 (859)
174 cd03717 SOCS_SOCS_like SOCS (s 27.0 53 0.0012 23.7 2.1 19 9-27 1-19 (39)
175 KOG4218|consensus 25.1 3.8E+02 0.0081 29.1 8.6 27 580-606 405-431 (475)
176 KOG1832|consensus 24.8 1.4E+03 0.031 28.5 20.6 115 594-708 587-737 (1516)
177 PF04869 Uso1_p115_head: Uso1 23.7 2.4E+02 0.0053 30.6 7.4 169 438-639 50-231 (312)
178 PF13646 HEAT_2: HEAT repeats; 23.5 86 0.0019 26.2 3.2 43 720-775 31-73 (88)
179 KOG2734|consensus 23.3 3.3E+02 0.0071 30.9 8.1 40 580-621 335-374 (536)
180 KOG0403|consensus 23.1 2.4E+02 0.0051 32.0 7.0 179 552-750 71-263 (645)
181 KOG1078|consensus 22.0 1.5E+03 0.033 27.7 17.8 118 652-774 283-414 (865)
182 KOG2213|consensus 21.7 8.4E+02 0.018 27.3 10.7 24 648-676 209-232 (460)
183 KOG0473|consensus 21.1 7.1 0.00015 40.0 -4.6 84 196-288 39-123 (326)
184 PF05918 API5: Apoptosis inhib 20.8 1.4E+03 0.031 26.9 17.5 133 610-754 195-349 (556)
185 KOG3678|consensus 20.4 4.2E+02 0.009 30.2 8.2 182 588-777 244-436 (832)
No 1
>KOG3665|consensus
Probab=100.00 E-value=2.9e-75 Score=677.94 Aligned_cols=655 Identities=30% Similarity=0.432 Sum_probs=557.9
Q ss_pred CCcHHHHHHHHHHhhHHHhhhhcCCCcccccccccccccCCCCChHHHHHHHHHHHhcCCcccchhhHhhccCCCCceeE
Q psy17257 11 PESLVDQCIRYLLHSVDRFTFKFHDVNKFRCEDVKFRCEDVKFPREISEKFLSMYEKSGGIVIDSFVDTFLTKDITHMKS 90 (778)
Q Consensus 11 p~sL~dlCi~~v~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~LP~ei~~~ll~~l~~~~~~l~d~~~~~f~~~~~~~L~~ 90 (778)
++||.++-...++.+|. .|. + ......|+++.++++...++......+......+.. ..++++
T Consensus 2 ~~sl~~~a~~~ia~~i~-------ng~-y-------~~~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~--~f~ltk 64 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQ-------NGS-Y-------NNLQYELDPKSSNKIYSELLLKKFELTPEFLERIIR--KFNLTK 64 (699)
T ss_pred CCchhhhhHHHHHHHHh-------cCC-c-------cccceecChhhhHHHHHHHHhccCCCchhHHHhhhh--hheeEE
Confidence 57899999999999887 343 3 446678999999999998887544345555555543 379999
Q ss_pred EEeeCCccCHHHHHhhccCCccEEecCCCCCCCHh----------HH-HH-HH-hcCCCCceeecCCCCCCCccccchhh
Q psy17257 91 VKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQA----------SL-EV-LN-MSSDQLYSLSLGPHCSMFPDCLESEV 157 (778)
Q Consensus 91 L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~----------~l-~~-L~-~~~~~L~~L~Ls~c~~~~~~~~~~~~ 157 (778)
+++.+..+....++.+..+.|++|.|++...+... .+ .. +. ++.++|++|+++|......+|..
T Consensus 65 i~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~--- 141 (699)
T KOG3665|consen 65 IDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPK--- 141 (699)
T ss_pred eeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHH---
Confidence 99999999999999888777999999887533221 11 11 22 36689999999996655333321
Q ss_pred hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccc
Q psy17257 158 VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMF 237 (778)
Q Consensus 158 ~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i 237 (778)
.+...+|+|++|.++|..+ ..+++..++.++|+|.+||||++++
T Consensus 142 -----------------------------------kig~~LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 142 -----------------------------------KIGTMLPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred -----------------------------------HHhhhCcccceEEecCcee-cchhHHHHhhccCccceeecCCCCc
Confidence 2336899999999999999 6777888999999999999999999
Q ss_pred cCCcccchHHHhccccccEEEcCCCCCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEE
Q psy17257 238 LFDNKDLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSL 316 (778)
Q Consensus 238 ~~~~~~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~L 316 (778)
+ ++.+++.+ .+|++|.|.+..+.. ..+..+++|++|++||+|...... +. .....+++. ...||+|++|
T Consensus 186 ~----nl~GIS~L-knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~--~~--~ii~qYlec-~~~LpeLrfL 255 (699)
T KOG3665|consen 186 S----NLSGISRL-KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND--DT--KIIEQYLEC-GMVLPELRFL 255 (699)
T ss_pred c----CcHHHhcc-ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc--ch--HHHHHHHHh-cccCccccEE
Confidence 9 89999999 699999999999865 677889999999999999998732 11 122345553 6789999999
Q ss_pred eecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC-CccccCCCceEEeCCCCHHHHHHHHHh
Q psy17257 317 DISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG-ASHRHDIPALRVAGDCNEAQLLIAAKA 395 (778)
Q Consensus 317 DLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~-~~~~~~i~~l~v~g~~~~~qil~al~~ 395 (778)
|+||+.+..+-+ + .++. .||+|+.+++.+|... ++..++++ +.+.++.+....++.|
T Consensus 256 DcSgTdi~~~~l-e-----------------~ll~-sH~~L~~i~~~~~~~~~~~~~~~i~---~ln~at~~s~i~~L~~ 313 (699)
T KOG3665|consen 256 DCSGTDINEEIL-E-----------------ELLN-SHPNLQQIAALDCLALSAVSSTEIR---VLNTATLDSSIQALTY 313 (699)
T ss_pred ecCCcchhHHHH-H-----------------HHHH-hCccHhhhhhhhhhccccccccCce---eeeecchhHHHHHHHH
Confidence 999998865433 2 3674 9999999999987644 22234444 5555556666666666
Q ss_pred cC--ChHHHHHHHHHHHHHhcc---ccccCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy17257 396 YI--DRPEMLQQVLNDLYHIFR---YDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHI 470 (778)
Q Consensus 396 y~--~R~~~~~~aL~~L~~l~~---~~~~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~ 470 (778)
|. +|+..+.++++.++.+++ ...+.+.++|+++|+.+|+.|+. ..|..|+|||++|+++.. .++++.++..+
T Consensus 314 ~~~l~r~~~v~~cl~~l~~~~~~~~~~~~~~~~~~l~~i~~sm~~~~s--~~~i~~~~CL~~i~~~~~-~~l~~~~~~~~ 390 (699)
T KOG3665|consen 314 YLNLKRPSEVSRCLNELLDLLKSLDSTREYDISECLKLIINSMNTFSS--SNQIQGSACLIHIVKHTK-QRLSPLLVSLL 390 (699)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC--hhhhhHHHHHHHHHHhhh-hccChHHHHHH
Confidence 65 588899999999999887 33455789999999999999998 788999999999999998 89999999999
Q ss_pred HHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCC
Q psy17257 471 ITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVD 550 (778)
Q Consensus 471 i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s 550 (778)
+..||++|+. ..++++|+++++|++.++....+++.+. ++.+..++.+| +..|+.++.+....++++.
T Consensus 391 l~~LLn~v~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 458 (699)
T KOG3665|consen 391 LKVLLNLVEK---LDTLDSNDELTLCNSIILLLSLLVSRRK---LLSVLDHHEQD------NIQQRLTVCLSISTACQVV 458 (699)
T ss_pred HHHHHHhhhc---ccccccchhHHHHHHHHHHHHHHHHHHH---Hhhccchhhhh------hhhHHHHHhhcchhHHHHH
Confidence 9999999988 4578999999999999999999999887 88888888877 8888888888889999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHH
Q psy17257 551 NAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNM 630 (778)
Q Consensus 551 ~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~ 630 (778)
..++...+..+++..++..+. +.....|+.+++|+ ++|++||++|++|+.|++.+|++++++|++.| ++.+++++|
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~i 534 (699)
T KOG3665|consen 459 SITKVNVGELGIVLTLLLRIK-LRKIYWCDDVLEFT--ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKI 534 (699)
T ss_pred HHHHhccchhHHHHHHHHHHH-hhccchhhHHHHHH--HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHH
Confidence 999999999999999999999 88888999999998 99999999999999999999999999999999 899999999
Q ss_pred HhhhhhhhhhhhhhhcccchhHHH--HHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhcc
Q psy17257 631 MGLLGNVAEVKSLRPKLMTSKFIE--VFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIER 708 (778)
Q Consensus 631 lgll~niaev~~l~~~l~~~~~i~--~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~ 708 (778)
||+++|+|+|.++++.+|..+++. +|..++..+ +++|+||+|||||||++++|++ +...+.|+++.+.|+++|.+
T Consensus 535 l~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w-~~~ersY~~~siLa~ll~~~~~--~~~~~~r~~~~~~l~e~i~~ 611 (699)
T KOG3665|consen 535 LGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW-DSIERSYNAASILALLLSDSEK--TTECVFRNSVNELLVEAISR 611 (699)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHhCCCc--CccccchHHHHHHHHHHhhc
Confidence 999999999999999999999988 888877776 7899999999999999999988 45789999999999999999
Q ss_pred CCCCCccceecccchh-hHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhcc
Q psy17257 709 WPIDSERNINYRSFEP-IIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 709 w~~~~~~~v~yrsf~p-~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
|+.+..++++||||.| |.+++++++.||+||||+||++|++++||+ ||+++.++||.+.+.++..++
T Consensus 612 ~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 679 (699)
T KOG3665|consen 612 WLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-YCKLVRESNGFELIENIRVLS 679 (699)
T ss_pred cCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-hhhhhHhccchhhhhhcchhH
Confidence 9999999999999999 999999999999999999999999999999 999999999999999887653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.36 E-value=3.9e-12 Score=158.97 Aligned_cols=228 Identities=18% Similarity=0.150 Sum_probs=150.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.+++.....+. .++|+.|+|++| ++++.-...+...+++|++|+|++|.+. +..+. ...+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--~~~p~-----~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFT--GSIPR-----GSIP 140 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccc--cccCc-----cccC
Confidence 4799999999887654433443 688999999998 5764333455556789999999999875 22210 0011
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+... .+...+.+ +..++.+++|+.|++++|.+ .+. ++..+.++++|++||+++|.++ +. ..
T Consensus 141 ~L~~L~Ls-------~n~~~~~~----p~~~~~l~~L~~L~L~~n~l-~~~-~p~~~~~l~~L~~L~L~~n~l~-~~-~p 205 (968)
T PLN00113 141 NLETLDLS-------NNMLSGEI----PNDIGSFSSLKVLDLGGNVL-VGK-IPNSLTNLTSLEFLTLASNQLV-GQ-IP 205 (968)
T ss_pred CCCEEECc-------CCcccccC----ChHHhcCCCCCEEECccCcc-ccc-CChhhhhCcCCCeeeccCCCCc-Cc-CC
Confidence 11111111 11112211 12237788888888888877 432 3335667888888888888876 32 13
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+.++ ++|+.|++++|.+++..+..++++++|++||+++|.. + |.. |. .+..+++|+.|++++|.+.
T Consensus 206 ~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~--~~~---p~-----~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 206 RELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL-T--GPI---PS-----SLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred hHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee-c--ccc---Ch-----hHhCCCCCCEEECcCCeee
Confidence 457777 6888888888888777777888888888888888876 2 211 21 3677888888888888765
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+. +|..+ ...++|+.|.|.+|.+.
T Consensus 274 ~~-------------------~p~~l-~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 274 GP-------------------IPPSI-FSLQKLISLDLSDNSLS 297 (968)
T ss_pred cc-------------------CchhH-hhccCcCEEECcCCeec
Confidence 31 23333 25688999999988754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.34 E-value=4.3e-12 Score=158.57 Aligned_cols=245 Identities=20% Similarity=0.180 Sum_probs=135.1
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCC--ccccchhhhhcccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMF--PDCLESEVVVGEKQ 163 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~--~~~~~~~~~l~e~~ 163 (778)
.+|++|+|++|.+++.... -..++|++|++++| .+++.....+ ..+++|+.|+|++|.... +..+. ..
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n-~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~-------~l 187 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNN-MLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLT-------NL 187 (968)
T ss_pred CCCCEEECcCCccccccCc-cccCCCCEEECcCC-cccccCChHH-hcCCCCCEEECccCcccccCChhhh-------hC
Confidence 5899999998887642221 12467889999887 4654322344 346788888888887641 11111 00
Q ss_pred ccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCccc
Q psy17257 164 RADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKD 243 (778)
Q Consensus 164 p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~ 243 (778)
+..+.+... .+...+.+ +..+.++++|+.|++++|.+ ++. ++..+..+++|++||+++|.++ +. .
T Consensus 188 ~~L~~L~L~-------~n~l~~~~----p~~l~~l~~L~~L~L~~n~l-~~~-~p~~l~~l~~L~~L~L~~n~l~-~~-~ 252 (968)
T PLN00113 188 TSLEFLTLA-------SNQLVGQI----PRELGQMKSLKWIYLGYNNL-SGE-IPYEIGGLTSLNHLDLVYNNLT-GP-I 252 (968)
T ss_pred cCCCeeecc-------CCCCcCcC----ChHHcCcCCccEEECcCCcc-CCc-CChhHhcCCCCCEEECcCceec-cc-c
Confidence 111111110 11111111 12236677777777777776 432 2334566777777777777765 32 1
Q ss_pred chHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 244 LSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 244 l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
...+.++ ++|+.|.+++|.+.+..+..+.++++|++||+++|.+ + |.+ |. .+..+++|+.|++++|.+
T Consensus 253 p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~--~~~---p~-----~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 253 PSSLGNL-KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-S--GEI---PE-----LVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ChhHhCC-CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-c--cCC---Ch-----hHcCCCCCcEEECCCCcc
Confidence 2346666 5777777777777666666677777777777777765 1 111 21 245666677777766665
Q ss_pred CCCcccccc-C---C-CCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 324 AGRGVAEFS-S---K-GSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 324 ~~~~~~~~~-~---~-~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+....... . . .........+.+|.... ..++|+.|.|.+|.+.
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeE
Confidence 432110000 0 0 00000112234555553 6788999999888753
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.25 E-value=3.2e-11 Score=130.82 Aligned_cols=199 Identities=18% Similarity=0.157 Sum_probs=103.3
Q ss_pred hhHhhccCCCCceeEEEeeCCccCHHHHHhhc-----cCCccEEecCCCCCCC--HhHHHHHH---hcCCCCceeecCCC
Q psy17257 76 FVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKCANVS--QASLEVLN---MSSDQLYSLSLGPH 145 (778)
Q Consensus 76 ~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~~~lt--~~~l~~L~---~~~~~L~~L~Ls~c 145 (778)
+...|... .+|+.++++++.+++.+...+. .+.|++|+++++ .++ ...+..+. ..+++|+.|++++|
T Consensus 15 ~~~~~~~l--~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 15 ATELLPKL--LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred hHHHHHHH--hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 33444432 3577788887777766554332 345777777776 344 23332211 23567788888777
Q ss_pred CCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHH---Hhc
Q psy17257 146 CSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQ---LYR 222 (778)
Q Consensus 146 ~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~---~~~ 222 (778)
.... .... .+ ..+... ++|++|++++|.+ ++.++.. .+.
T Consensus 92 ~~~~--~~~~--~~--------------------------------~~l~~~-~~L~~L~ls~~~~-~~~~~~~l~~~l~ 133 (319)
T cd00116 92 ALGP--DGCG--VL--------------------------------ESLLRS-SSLQELKLNNNGL-GDRGLRLLAKGLK 133 (319)
T ss_pred CCCh--hHHH--HH--------------------------------HHHhcc-CcccEEEeeCCcc-chHHHHHHHHHHH
Confidence 6641 1100 00 011122 5567777776666 4433322 233
Q ss_pred cC-CCCCeEeccCccccCCcccch----HHHhccccccEEEcCCCCCcchh----hHhhcCCCCccEEeccCCCCCCCCC
Q psy17257 223 DM-PHLTHLNLSKCMFLFDNKDLS----FLAEFKDTLVSLVLFNVSIVKDN----LDHICSLPLLRRLDISVSSDYPDYG 293 (778)
Q Consensus 223 ~l-p~L~~LdLS~~~i~~~~~~l~----~L~~l~~~L~~L~L~~~~~~~~~----~~~l~~L~~L~~LdLS~~~~~~~~g 293 (778)
.+ ++|+.|++++|.++ +.. .. .+..+ ++|++|++++|.+++.. ...+..+++|++|++++|.+ ++.+
T Consensus 134 ~~~~~L~~L~L~~n~l~-~~~-~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~ 209 (319)
T cd00116 134 DLPPALEKLVLGRNRLE-GAS-CEALAKALRAN-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEG 209 (319)
T ss_pred hCCCCceEEEcCCCcCC-chH-HHHHHHHHHhC-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHH
Confidence 44 66677777766665 221 11 13333 46677777666665322 22344455677777766655 2111
Q ss_pred CCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 294 NYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 294 ~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
...+...+..+++|++||+++|.+.+
T Consensus 210 ------~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 210 ------ASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ------HHHHHHHhcccCCCCEEecCCCcCch
Confidence 02233334556667777777766543
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=3.1e-11 Score=130.88 Aligned_cols=195 Identities=20% Similarity=0.231 Sum_probs=114.7
Q ss_pred CceeEEEeeCCccCHHHHHhhc----cCCccEEecCCCCCCCHhHHHHHH---hcC-CCCceeecCCCCCCCccccchhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL----SHHVQELELIKCANVSQASLEVLN---MSS-DQLYSLSLGPHCSMFPDCLESEV 157 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~----~~~L~~LdLs~~~~lt~~~l~~L~---~~~-~~L~~L~Ls~c~~~~~~~~~~~~ 157 (778)
.+|++|++++|.+.+.....+. .++|++|++++| .+++.+...+. ... ++|+.|++++|.... .....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~-- 156 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-ASCEA-- 156 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-hHHHH--
Confidence 4677777777666533322221 134777777776 46554443222 223 567777777776541 11000
Q ss_pred hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHH---hccCCCCCeEeccC
Q psy17257 158 VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQL---YRDMPHLTHLNLSK 234 (778)
Q Consensus 158 ~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~---~~~lp~L~~LdLS~ 234 (778)
....+..+++|++|++++|.+ ++.++..+ +..+++|++|++++
T Consensus 157 ---------------------------------~~~~~~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 157 ---------------------------------LAKALRANRDLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred ---------------------------------HHHHHHhCCCcCEEECcCCCC-chHHHHHHHHHHHhCCCCCEEeccC
Confidence 001235667888888888888 65554433 34456888888888
Q ss_pred ccccCCcccch----HHHhccccccEEEcCCCCCcchhhHhhc-----CCCCccEEeccCCCCCCCCCCCCCCchhhHHH
Q psy17257 235 CMFLFDNKDLS----FLAEFKDTLVSLVLFNVSIVKDNLDHIC-----SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSY 305 (778)
Q Consensus 235 ~~i~~~~~~l~----~L~~l~~~L~~L~L~~~~~~~~~~~~l~-----~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~ 305 (778)
|.++ +. .+. .+..+ ++|++|++++|.+++..+..+. ..++|++|++++|.+ ++.|. ..+..
T Consensus 203 n~i~-~~-~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i-~~~~~------~~l~~ 272 (319)
T cd00116 203 NGLT-DE-GASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI-TDDGA------KDLAE 272 (319)
T ss_pred CccC-hH-HHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC-CcHHH------HHHHH
Confidence 8876 22 122 23345 6788888888887753333322 247888888888876 32221 23333
Q ss_pred HHhcCCCCCEEeecCCCCCCCcc
Q psy17257 306 IIFKLPHLVSLDISGTNLAGRGV 328 (778)
Q Consensus 306 ~~~~lp~L~~LDLSgn~l~~~~~ 328 (778)
....+++|++||+++|.+..++.
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHhcCCCccEEECCCCCCcHHHH
Confidence 45667888888888888876643
No 6
>KOG3207|consensus
Probab=99.18 E-value=4.7e-11 Score=127.74 Aligned_cols=190 Identities=20% Similarity=0.179 Sum_probs=142.2
Q ss_pred CceeEEEeeCCccCHHHHH-hhc-cCCccEEecCCCCCCCH-hHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQ-KLL-SHHVQELELIKCANVSQ-ASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~-~L~-~~~L~~LdLs~~~~lt~-~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
.+|+.+.|+++.+.+.+.. ... +++++.||||+| -++. ..+..+++.+++|+.|+|+.|++..+.+..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-------- 191 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-------- 191 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCcccc--------
Confidence 5799999999999887763 332 789999999998 4543 344678889999999999999987542211
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNK 242 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~ 242 (778)
....+++|+.|.|++|.+ +..++..++..+|+|+.|++++|... ..
T Consensus 192 -------------------------------~~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~-~~- 237 (505)
T KOG3207|consen 192 -------------------------------TTLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEII-LI- 237 (505)
T ss_pred -------------------------------chhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhccccc-ce-
Confidence 113568999999999999 88888889999999999999998432 10
Q ss_pred cchHHHhccccccEEEcCCCCCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 243 DLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 243 ~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
....-.-+ ..|++|+|++|++.+ +....++.++.|+.|+++.+.+ .+-.+ .+.+.+. ....+|+|++|+++.|
T Consensus 238 ~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi--~si~~--~d~~s~~-kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 238 KATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGI--ASIAE--PDVESLD-KTHTFPKLEYLNISEN 311 (505)
T ss_pred ecchhhhh-hHHhhccccCCcccccccccccccccchhhhhccccCc--chhcC--CCccchh-hhcccccceeeecccC
Confidence 11122334 589999999999865 3455688999999999999987 22211 1112333 2578999999999999
Q ss_pred CCC
Q psy17257 322 NLA 324 (778)
Q Consensus 322 ~l~ 324 (778)
++.
T Consensus 312 ~I~ 314 (505)
T KOG3207|consen 312 NIR 314 (505)
T ss_pred ccc
Confidence 874
No 7
>KOG4194|consensus
Probab=99.17 E-value=6.6e-12 Score=137.76 Aligned_cols=241 Identities=16% Similarity=0.149 Sum_probs=143.7
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.++++|+|+++.|++-+...|. ..+|..|.|+.| .+|.--. ..+++++.|+.|+|..|..-.-++..+.+.-+-...
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccC-cccccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 6899999999988876655443 347888888887 5764222 333567888888888887542222211100000000
Q ss_pred cccccccchhhhcccCCCCCC------------CcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEec
Q psy17257 165 ADDFMMTDFEININGRATSSG------------SLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNL 232 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g------------~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdL 232 (778)
.+.++ .+.-+.+..+-| .++....+++.+++.|+.|++|+|.+ ..-.+. ....+++|+.|||
T Consensus 251 ---klqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI-~rih~d-~WsftqkL~~LdL 324 (873)
T KOG4194|consen 251 ---KLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI-QRIHID-SWSFTQKLKELDL 324 (873)
T ss_pred ---hhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh-heeecc-hhhhcccceeEec
Confidence 00000 000000000000 01111123457888888888888877 433333 5567888999999
Q ss_pred cCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 233 SKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 233 S~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
|+|.++ .+ ..+..+ ..|+.|+|+.|.+..-.-..+..+++|+.||+++|.+ + +.+ +.-+..+..+
T Consensus 325 s~N~i~----~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s--~~I-----EDaa~~f~gl 391 (873)
T KOG4194|consen 325 SSNRIT----RLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-S--WCI-----EDAAVAFNGL 391 (873)
T ss_pred cccccc----cCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-E--EEE-----ecchhhhccc
Confidence 998887 34 246666 6888889988887643334567788999999999987 1 122 1111236779
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
|.|+.|++.||++.. +... +|. -.+.|+.|+|.++.+
T Consensus 392 ~~LrkL~l~gNqlk~--I~kr----------------Afs--gl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKS--IPKR----------------AFS--GLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhheeecCceeee--cchh----------------hhc--cCcccceecCCCCcc
Confidence 999999999998742 2211 232 357788899988873
No 8
>KOG2120|consensus
Probab=99.12 E-value=2.1e-11 Score=124.34 Aligned_cols=116 Identities=26% Similarity=0.257 Sum_probs=67.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhcc-CCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCC-cchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRD-MPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSI-VKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~-lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~-~~~~~~~l~ 273 (778)
.+|+.|..||++.|.+ +.+.+..++.+ -++|+.|+||++.-.++...++.+..-+++|..|+|+++.- ++.....+.
T Consensus 257 ~scs~L~~LNlsWc~l-~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFL-FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HhhhhHhhcCchHhhc-cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 6667777777777766 33334333333 45677777776653212213444443336777777776653 345556667
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
+++-|+||.+|.|..+. |...+. +...|.|.+||+-|+-
T Consensus 336 kf~~L~~lSlsRCY~i~--------p~~~~~--l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDII--------PETLLE--LNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcCCC--------hHHeee--eccCcceEEEEecccc
Confidence 77777777777776521 222222 5677888888887773
No 9
>KOG4341|consensus
Probab=99.12 E-value=3.4e-11 Score=128.21 Aligned_cols=241 Identities=22% Similarity=0.281 Sum_probs=173.9
Q ss_pred CceeEEEeeCCc-cCHHHHHhhc--cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 86 THMKSVKLRNAE-VSDSGMQKLL--SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 86 ~~L~~L~L~~~~-isd~~l~~L~--~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
..|+++.+++|. +.+..+..+. +++++.|++.+|.++|+..+..++..|++|++|+|.+|..++...+. .+++.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk---~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK---YLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH---HHHHh
Confidence 579999999998 8888888665 89999999999999999999999999999999999999888643322 35677
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc-ccCCc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM-FLFDN 241 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~ 241 (778)
||...++...|.=+|.+ -| ...+...+++++.+.+.||.-...+.+..+...++.+-.+|+-.|. ++ |.
T Consensus 215 C~kL~~lNlSwc~qi~~----~g-----v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~ 284 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG----NG-----VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-DE 284 (483)
T ss_pred hhhHHHhhhccCchhhc----Cc-----chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-ch
Confidence 77655555544332211 01 1134467777888878888654566677677778888888877654 44 33
Q ss_pred ccchHHHhccccccEEEcCCCCCc-chhhHhhc-CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeec
Q psy17257 242 KDLSFLAEFKDTLVSLVLFNVSIV-KDNLDHIC-SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDIS 319 (778)
Q Consensus 242 ~~l~~L~~l~~~L~~L~L~~~~~~-~~~~~~l~-~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLS 319 (778)
++--+...+..|+.|..+++... +..+..++ ++++|++|-++.|+.+++.|. +.+..+++.|+.+|+-
T Consensus 285 -~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f---------t~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 285 -DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF---------TMLGRNCPHLERLDLE 354 (483)
T ss_pred -HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh---------hhhhcCChhhhhhccc
Confidence 33334444468899999888754 44455544 688999999999988765442 2356889999999999
Q ss_pred CCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 320 GTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 320 gn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
++..+.++... .+. +..+.|+.+.|.+|..
T Consensus 355 ~~~~~~d~tL~-----------------sls-~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 355 ECGLITDGTLA-----------------SLS-RNCPRLRVLSLSHCEL 384 (483)
T ss_pred ccceehhhhHh-----------------hhc-cCCchhccCChhhhhh
Confidence 99887665211 244 4788999999987763
No 10
>KOG2120|consensus
Probab=99.10 E-value=7e-11 Score=120.61 Aligned_cols=177 Identities=21% Similarity=0.274 Sum_probs=115.6
Q ss_pred ceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
+|+.|+|.+..++|.....+. +.+|++|||+.|+.+|..++..+..+|+.|..|+|+.|...++.. . +
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V-t--v-------- 279 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV-T--V-------- 279 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh-h--H--------
Confidence 455555555555544444333 456777777777777766666666666777777777776543211 0 0
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcc-cChhHHHHHhccCCCCCeEeccCcc-ccCCccc
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTL-MSQSICTQLYRDMPHLTHLNLSKCM-FLFDNKD 243 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l-~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~~~ 243 (778)
....--++|+.||++|+.- +....+..+.+.||+|.+||||.|. ++ ++ -
T Consensus 280 ---------------------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~-~~-~ 330 (419)
T KOG2120|consen 280 ---------------------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK-ND-C 330 (419)
T ss_pred ---------------------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC-ch-H
Confidence 0112346899999999852 1456788889999999999999776 44 32 3
Q ss_pred chHHHhccccccEEEcCCCCCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCE
Q psy17257 244 LSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVS 315 (778)
Q Consensus 244 l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~ 315 (778)
+..+.++ +.|++|+++.|-... ..+-.+...|.|.+||+-++-. |+. ++.+...+|+|+.
T Consensus 331 ~~~~~kf-~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs---dt~--------mel~~e~~~~lki 391 (419)
T KOG2120|consen 331 FQEFFKF-NYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS---DTT--------MELLKEMLSHLKI 391 (419)
T ss_pred HHHHHhc-chheeeehhhhcCCChHHeeeeccCcceEEEEeccccC---chH--------HHHHHHhCccccc
Confidence 5567788 799999999997543 3344577889999999987753 222 3333456777654
No 11
>KOG4341|consensus
Probab=99.09 E-value=3.2e-11 Score=128.35 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=68.6
Q ss_pred cccchhhHhhccCCCCceeEEEeeCCc-cCHHHHHhhc--cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCC
Q psy17257 71 IVIDSFVDTFLTKDITHMKSVKLRNAE-VSDSGMQKLL--SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCS 147 (778)
Q Consensus 71 ~l~d~~~~~f~~~~~~~L~~L~L~~~~-isd~~l~~L~--~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~ 147 (778)
.+.++.+..|.. .++++++|++.+|. ++|..+..+. +++|+.|++..|..+|+..++.+++.|++|++|++++|..
T Consensus 150 ~v~~sslrt~~~-~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 150 AVGDSSLRTFAS-NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred cCCcchhhHHhh-hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 366777777765 44799999999998 9999888665 8999999999998999999999999999999999999998
Q ss_pred CCcc
Q psy17257 148 MFPD 151 (778)
Q Consensus 148 ~~~~ 151 (778)
+..+
T Consensus 229 i~~~ 232 (483)
T KOG4341|consen 229 ISGN 232 (483)
T ss_pred hhcC
Confidence 8543
No 12
>KOG4194|consensus
Probab=99.06 E-value=5.8e-11 Score=130.48 Aligned_cols=203 Identities=18% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc--cCCccEEecCCCCCCCHhHH
Q psy17257 50 DVKFPREISEKFLSMYEKSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL--SHHVQELELIKCANVSQASL 127 (778)
Q Consensus 50 ~~~LP~ei~~~ll~~l~~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~--~~~L~~LdLs~~~~lt~~~l 127 (778)
.+.+|+.. +.++ -.+.++++..+..|.+. .+|++++++++.++... .+. ..+|+.|+|.+| .|+.-.-
T Consensus 73 ~g~lp~~t--~~Ld---lsnNkl~~id~~~f~nl--~nLq~v~l~~N~Lt~IP--~f~~~sghl~~L~L~~N-~I~sv~s 142 (873)
T KOG4194|consen 73 KGFLPSQT--QTLD---LSNNKLSHIDFEFFYNL--PNLQEVNLNKNELTRIP--RFGHESGHLEKLDLRHN-LISSVTS 142 (873)
T ss_pred CCcCccce--eeee---ccccccccCcHHHHhcC--Ccceeeeeccchhhhcc--cccccccceeEEeeecc-ccccccH
Confidence 45666654 2222 23345888888888865 69999999998875321 222 356999999987 4544322
Q ss_pred HHHHhcCCCCceeecCCCCCCC-cc-ccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEE
Q psy17257 128 EVLNMSSDQLYSLSLGPHCSMF-PD-CLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFS 205 (778)
Q Consensus 128 ~~L~~~~~~L~~L~Ls~c~~~~-~~-~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~ 205 (778)
+.+. ..+.|++|+||.|.... +. +.+. +.+. +.+++ ....|+.-..+....+.+|.+|.
T Consensus 143 e~L~-~l~alrslDLSrN~is~i~~~sfp~------~~ni-----~~L~L-------a~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 143 EELS-ALPALRSLDLSRNLISEIPKPSFPA------KVNI-----KKLNL-------ASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred HHHH-hHhhhhhhhhhhchhhcccCCCCCC------CCCc-----eEEee-------ccccccccccccccccchheeee
Confidence 3332 24578888888876641 10 1110 0000 00000 00112111112226667888888
Q ss_pred ecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH--HHhccccccEEEcCCCCCcchhhHhhcCCCCccEEec
Q psy17257 206 LIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF--LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDI 283 (778)
Q Consensus 206 Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~--L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdL 283 (778)
|+.|++ +.-.. ..++++|+|+.|||..|.+. .+.+ +..+ ++|+.|.|..|++..-.-..+..|.++++|++
T Consensus 204 LsrNri-ttLp~-r~Fk~L~~L~~LdLnrN~ir----ive~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 204 LSRNRI-TTLPQ-RSFKRLPKLESLDLNRNRIR----IVEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred cccCcc-cccCH-HHhhhcchhhhhhcccccee----eehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 888887 44333 36777888888888888776 3322 3445 56666667666654311122445566666666
Q ss_pred cCCCC
Q psy17257 284 SVSSD 288 (778)
Q Consensus 284 S~~~~ 288 (778)
+.|++
T Consensus 277 ~~N~l 281 (873)
T KOG4194|consen 277 ETNRL 281 (873)
T ss_pred ccchh
Confidence 66655
No 13
>KOG1909|consensus
Probab=98.98 E-value=5.1e-10 Score=117.09 Aligned_cols=230 Identities=20% Similarity=0.207 Sum_probs=157.1
Q ss_pred CceeEEEeeCCc---cCHHHHHhh-------c-cCCccEEecCCCCCCCHhHHHH---HHhcCCCCceeecCCCCCCCcc
Q psy17257 86 THMKSVKLRNAE---VSDSGMQKL-------L-SHHVQELELIKCANVSQASLEV---LNMSSDQLYSLSLGPHCSMFPD 151 (778)
Q Consensus 86 ~~L~~L~L~~~~---isd~~l~~L-------~-~~~L~~LdLs~~~~lt~~~l~~---L~~~~~~L~~L~Ls~c~~~~~~ 151 (778)
+.|+.+++++-. +.+..+.++ . +++|+.||||.| -+...+++. +.+++.+|++|.|.+|..- +.
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ 135 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PE 135 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCC-hh
Confidence 367777776532 333333322 1 558999999987 577666643 3356888999999988764 22
Q ss_pred ccchh-hhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChh---HHHHHhccCCCC
Q psy17257 152 CLESE-VVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQS---ICTQLYRDMPHL 227 (778)
Q Consensus 152 ~~~~~-~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~---~l~~~~~~lp~L 227 (778)
..... .++.+ . .....++.-++|+++..++|++ .+. .+...++..|.|
T Consensus 136 ag~~l~~al~~-----------l----------------~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 136 AGGRLGRALFE-----------L----------------AVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTL 187 (382)
T ss_pred HHHHHHHHHHH-----------H----------------HHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcccc
Confidence 21100 00000 0 0012236678999999999998 443 456678889999
Q ss_pred CeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcc----hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchh
Q psy17257 228 THLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVK----DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPND 301 (778)
Q Consensus 228 ~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~----~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~ 301 (778)
+.+-++.|.+...++.+ .++..| ++|+.|+|.+|-++. .+-..++.+++|+.|.+++|.+ .+.|+. .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll-~~~Ga~-----a 260 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL-ENEGAI-----A 260 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc-ccccHH-----H
Confidence 99999999986222111 246677 899999999999874 2345688899999999999998 666766 6
Q ss_pred hHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 302 MLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 302 ~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
....+....|.|+.|++.||.++-++...... -+ ...|.|..|.|.+|.++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~---------------~~-~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAA---------------CM-AEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHH---------------HH-hcchhhHHhcCCccccc
Confidence 66666777999999999999988765432111 11 14688999999999863
No 14
>KOG0444|consensus
Probab=98.95 E-value=7.2e-11 Score=130.20 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCChHHHHH-HHHHHH-hcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHH--hhccCCccEEecCCCCCCCHhH
Q psy17257 51 VKFPREISEK-FLSMYE-KSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQ--KLLSHHVQELELIKCANVSQAS 126 (778)
Q Consensus 51 ~~LP~ei~~~-ll~~l~-~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~--~L~~~~L~~LdLs~~~~lt~~~ 126 (778)
..+|.|++.- -++.+. ..++ +. +..+-+++. ++|+++.++.+.+...|+. .+....|+.||||.| +++. .
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~-L~-~vhGELs~L--p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~E-v 118 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQ-LI-SVHGELSDL--PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLRE-V 118 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhh-hH-hhhhhhccc--hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhh-c
Confidence 4677877652 233333 2222 22 223334433 5889999998887776663 566788999999998 5653 1
Q ss_pred HHHHHhcCCCCceeecCCCCCC
Q psy17257 127 LEVLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 127 l~~L~~~~~~L~~L~Ls~c~~~ 148 (778)
...+ +..+++-.|+||.|++-
T Consensus 119 P~~L-E~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 119 PTNL-EYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred chhh-hhhcCcEEEEcccCccc
Confidence 2233 45578999999998763
No 15
>KOG0444|consensus
Probab=98.85 E-value=1.4e-10 Score=128.10 Aligned_cols=200 Identities=19% Similarity=0.178 Sum_probs=117.6
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhh-hhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEV-VVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~-~l~e~~p 164 (778)
+.|-.|+|+++.+..-....-+..+|+.|+|++|. +....+..+ ..+++|+.|.+++..-.. +.++... .+.
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~TqRTl-~N~Ptsld~l~---- 222 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQRTL-DNIPTSLDDLH---- 222 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccccchh-hcCCCchhhhh----
Confidence 67888899998865433333335679999999983 544444433 245677888888765431 2222100 000
Q ss_pred cccccccchhhhcccCCCCCC-CcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCccc
Q psy17257 165 ADDFMMTDFEININGRATSSG-SLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKD 243 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g-~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~ 243 (778)
.+.|. ..+. .++.. +..+.++++|+.|+||+|.+ +. +..-.....+|+.|++|.|+++ .
T Consensus 223 ----NL~dv--------DlS~N~Lp~v-Pecly~l~~LrrLNLS~N~i-te--L~~~~~~W~~lEtLNlSrNQLt----~ 282 (1255)
T KOG0444|consen 223 ----NLRDV--------DLSENNLPIV-PECLYKLRNLRRLNLSGNKI-TE--LNMTEGEWENLETLNLSRNQLT----V 282 (1255)
T ss_pred ----hhhhc--------cccccCCCcc-hHHHhhhhhhheeccCcCce-ee--eeccHHHHhhhhhhccccchhc----c
Confidence 00000 0011 11111 22336777888888888777 43 2212334567777777777777 4
Q ss_pred ch-HHHhccccccEEEcCCCCCc-chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 244 LS-FLAEFKDTLVSLVLFNVSIV-KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 244 l~-~L~~l~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
++ ++-++ ++|+.|.+.+|+++ +.+|..|+++.+|+++..++|.+ +.....+..|+.|+.|.++.|
T Consensus 283 LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L------------ElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 283 LPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL------------ELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred chHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc------------ccCchhhhhhHHHHHhccccc
Confidence 54 46666 67777777777765 34556677777777777777765 111224677888888888888
Q ss_pred CCCC
Q psy17257 322 NLAG 325 (778)
Q Consensus 322 ~l~~ 325 (778)
.+++
T Consensus 350 rLiT 353 (1255)
T KOG0444|consen 350 RLIT 353 (1255)
T ss_pred ceee
Confidence 8764
No 16
>KOG3665|consensus
Probab=98.83 E-value=2.9e-07 Score=108.91 Aligned_cols=324 Identities=19% Similarity=0.227 Sum_probs=185.1
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
.-+++..++.+. .+....+..+.+ +.|++|.|++....-.+.... . .... ..++.+. ++
T Consensus 59 ~f~ltki~l~~~-~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~----~-~idi-~~lL~~~-Ln----------- 117 (699)
T KOG3665|consen 59 KFNLTKIDLKNV-TLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDD----A-TIDI-ISLLKDL-LN----------- 117 (699)
T ss_pred hheeEEeeccce-ecchhHHHHHhh--ccccccCCcchHhhhhhhhhh----h-hccH-HHHHHHH-Hh-----------
Confidence 446888888876 455555555543 349999999887652111100 0 0000 0000111 10
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcc
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVK 266 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~ 266 (778)
-..-.+|++|+++|....+..-+..+...+|.|++|.+++-.+..+ +... -.+. ++|.+|++++.+++.
T Consensus 118 -------~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF~~lc~sF-pNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 118 -------EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND--DFSQLCASF-PNLRSLDISGTNISN 187 (699)
T ss_pred -------HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch--hHHHHhhcc-CccceeecCCCCccC
Confidence 1344689999999987644434455666799999999999877623 2333 3455 899999999999875
Q ss_pred hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCcc-ccccCCCCCCCCCccCC
Q psy17257 267 DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGV-AEFSSKGSPDVPYVTTD 345 (778)
Q Consensus 267 ~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~-~~~~~~~s~~~~~~~~~ 345 (778)
+..++.|++|++|-+.+-.+ .+ + ..+.. +.+|.+|+.||+|......+.. ...
T Consensus 188 --l~GIS~LknLq~L~mrnLe~-e~---~-----~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~q-------------- 241 (699)
T KOG3665|consen 188 --LSGISRLKNLQVLSMRNLEF-ES---Y-----QDLID-LFNLKKLRVLDISRDKNNDDTKIIEQ-------------- 241 (699)
T ss_pred --cHHHhccccHHHHhccCCCC-Cc---h-----hhHHH-HhcccCCCeeeccccccccchHHHHH--------------
Confidence 36788999999998876655 21 1 22333 6789999999999998765431 110
Q ss_pred cccccc--ccCccceEeeccccCCCCccc-------cCCCceEEeCCCCHHHHHHHHHhcCCh-H------HHHHHHHHH
Q psy17257 346 IPGLAS--RVDRPLEFLGLYGTKHGASHR-------HDIPALRVAGDCNEAQLLIAAKAYIDR-P------EMLQQVLND 409 (778)
Q Consensus 346 i~~l~~--~~~~~L~~L~L~~t~~~~~~~-------~~i~~l~v~g~~~~~qil~al~~y~~R-~------~~~~~aL~~ 409 (778)
+++ ...|+|+||+.++|+...--. ..++.+.+.+ ....+.... . ......++.
T Consensus 242 ---Ylec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~--------~~~~~~~~~~~i~~ln~at~~s~i~~ 310 (699)
T KOG3665|consen 242 ---YLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD--------CLALSAVSSTEIRVLNTATLDSSIQA 310 (699)
T ss_pred ---HHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh--------hhccccccccCceeeeecchhHHHHH
Confidence 110 246899999999998542110 1111121111 000000000 0 001111111
Q ss_pred HHHhccccccCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHHHhcCCCchhhh
Q psy17257 410 LYHIFRYDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDR-PVLSSLTKRHIITTILNGMHMHLEDDTMM 488 (778)
Q Consensus 410 L~~l~~~~~~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~-~~~~~~~~~~~i~~LL~am~~~~~~~~l~ 488 (778)
+-+........ ..+.|+..+...-.. ....-....+.+..++++|+.|+...+++
T Consensus 311 L~~~~~l~r~~------------------------~v~~cl~~l~~~~~~~~~~~~~~~~~~l~~i~~sm~~~~s~~~i~ 366 (699)
T KOG3665|consen 311 LTYYLNLKRPS------------------------EVSRCLNELLDLLKSLDSTREYDISECLKLIINSMNTFSSSNQIQ 366 (699)
T ss_pred HHHHHHhcChH------------------------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCChhhhh
Confidence 11111111111 222333333322221 11223346678889999999999977776
Q ss_pred h-hHHhhhccCcCCccccccHHHHHHHHHHHHhhhc
Q psy17257 489 R-NGCLTLCQFKIPQDVQFDYDRLVRILLHIITEME 523 (778)
Q Consensus 489 ~-n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~ 523 (778)
. .|+..++..+.-+-.++.+.++.+.+++.+....
T Consensus 367 ~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~~~ 402 (699)
T KOG3665|consen 367 GSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEKLD 402 (699)
T ss_pred HHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhccc
Confidence 5 4666666666644557788999999999888653
No 17
>KOG1909|consensus
Probab=98.79 E-value=1.5e-08 Score=106.29 Aligned_cols=220 Identities=17% Similarity=0.229 Sum_probs=157.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-----cCCccEEecCCCCCCCHh-------HHHHHH---hcCCCCceeecCCCCCCCc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKCANVSQA-------SLEVLN---MSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~-------~l~~L~---~~~~~L~~L~Ls~c~~~~~ 150 (778)
..+++|+|+++.+...+.+.++ .+.|++.++|.- +|+. .+..++ ..++.|+.|+||.|.+- +
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G-~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG-P 106 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC-c
Confidence 5899999999999988777554 468888888874 4431 222232 24669999999999874 2
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHH------------
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICT------------ 218 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~------------ 218 (778)
..... | ..+++++..|++|.+.+|.+ ...+=.
T Consensus 107 ~g~~~-------------------l----------------~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~ 150 (382)
T KOG1909|consen 107 KGIRG-------------------L----------------EELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVN 150 (382)
T ss_pred cchHH-------------------H----------------HHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHH
Confidence 33220 1 14568899999999999998 443211
Q ss_pred HHhccCCCCCeEeccCccccCCcc-cch-HHHhccccccEEEcCCCCCcch----hhHhhcCCCCccEEeccCCCCCCCC
Q psy17257 219 QLYRDMPHLTHLNLSKCMFLFDNK-DLS-FLAEFKDTLVSLVLFNVSIVKD----NLDHICSLPLLRRLDISVSSDYPDY 292 (778)
Q Consensus 219 ~~~~~lp~L~~LdLS~~~i~~~~~-~l~-~L~~l~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~~LdLS~~~~~~~~ 292 (778)
....+-|.|++++.+.|.+.+++. .+. .+..+ +.|+.+.+..|.+... ....+..|++|++|||.+|.+ +..
T Consensus 151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~e 228 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLE 228 (382)
T ss_pred hccCCCcceEEEEeeccccccccHHHHHHHHHhc-cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhH
Confidence 123456899999999999872221 111 24455 7999999999987532 335678999999999999987 433
Q ss_pred CCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 293 GNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 293 g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
|. ..+...+..+|+|+.|.++.|.+.+.|+... ..++. +..|+|+.|.+-+|.+
T Consensus 229 gs------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~--------------~~al~-~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 229 GS------VALAKALSSWPHLRELNLGDCLLENEGAIAF--------------VDALK-ESAPSLEVLELAGNEI 282 (382)
T ss_pred HH------HHHHHHhcccchheeecccccccccccHHHH--------------HHHHh-ccCCCCceeccCcchh
Confidence 32 3566668899999999999999998887542 11354 3678999999988874
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=8.1e-09 Score=101.44 Aligned_cols=105 Identities=28% Similarity=0.367 Sum_probs=47.8
Q ss_pred cCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHH-hccccccEEEcCCCCCcc-hhhHhhc
Q psy17257 197 KAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLA-EFKDTLVSLVLFNVSIVK-DNLDHIC 273 (778)
Q Consensus 197 ~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~-~l~~~L~~L~L~~~~~~~-~~~~~l~ 273 (778)
.+.+|+.|++++|.+ +. +. .+..+++|+.|++++|.++ ++. ++. .+ ++|++|.+++|++.+ ..+..+.
T Consensus 40 ~l~~L~~L~Ls~N~I-~~--l~-~l~~L~~L~~L~L~~N~I~----~i~~~l~~~l-p~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQI-TK--LE-GLPGLPRLKTLDLSNNRIS----SISEGLDKNL-PNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp T-TT--EEE-TTS---S----T-T----TT--EEE--SS-------S-CHHHHHH--TT--EEE-TTS---SCCCCGGGG
T ss_pred hhcCCCEEECCCCCC-cc--cc-CccChhhhhhcccCCCCCC----ccccchHHhC-CcCCEEECcCCcCCChHHhHHHH
Confidence 467788888888887 33 22 3445788888888888887 553 343 45 788888888888754 4456677
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEee
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDL 318 (778)
.+++|++|++.+|++ +... .+=..++..+|+|+.||-
T Consensus 111 ~l~~L~~L~L~~NPv-~~~~-------~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPV-CEKK-------NYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp G-TT--EEE-TT-GG-GGST-------THHHHHHHH-TT-SEETT
T ss_pred cCCCcceeeccCCcc-cchh-------hHHHHHHHHcChhheeCC
Confidence 888899999988887 2211 222335778999999874
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.71 E-value=5.2e-08 Score=123.31 Aligned_cols=239 Identities=16% Similarity=0.225 Sum_probs=114.8
Q ss_pred CCceeEEEeeCCc-cCHHHHHhhc-cCCccEEecCCCCCCCHhHHH-HHHhcCCCCceeecCCCCCCCccccchhhhhcc
Q psy17257 85 ITHMKSVKLRNAE-VSDSGMQKLL-SHHVQELELIKCANVSQASLE-VLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGE 161 (778)
Q Consensus 85 ~~~L~~L~L~~~~-isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~-~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e 161 (778)
.++|+.++|+++. +... ..+. .++|+.|+|++|..+. .++ .+ ..+++|+.|++++|... ..++....
T Consensus 633 l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~--~lp~si-~~L~~L~~L~L~~c~~L--~~Lp~~i~--- 702 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLV--ELPSSI-QYLNKLEDLDMSRCENL--EILPTGIN--- 702 (1153)
T ss_pred CCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCcc--ccchhh-hccCCCCEEeCCCCCCc--CccCCcCC---
Confidence 4689999999875 3321 1232 5789999999986553 232 33 45689999999998765 22221000
Q ss_pred ccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcccc--C
Q psy17257 162 KQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFL--F 239 (778)
Q Consensus 162 ~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~--~ 239 (778)
....+.+. + ++....+ .+-...++|+.|++++|.+ .. ++.. ..+++|+.|+++++... .
T Consensus 703 -l~sL~~L~----L---sgc~~L~-------~~p~~~~nL~~L~L~~n~i-~~--lP~~-~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 703 -LKSLYRLN----L---SGCSRLK-------SFPDISTNISWLDLDETAI-EE--FPSN-LRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred -CCCCCEEe----C---CCCCCcc-------ccccccCCcCeeecCCCcc-cc--cccc-ccccccccccccccchhhcc
Confidence 00000000 0 0000000 0101224556666666554 21 2211 13455555555543211 0
Q ss_pred Cc-ccchH-HHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEe
Q psy17257 240 DN-KDLSF-LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317 (778)
Q Consensus 240 ~~-~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LD 317 (778)
+. ..+.. .....++|+.|.+++|.....++..++++++|++|++++|..+. ..|. ...+++|+.|+
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~------~LP~------~~~L~sL~~L~ 831 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE------TLPT------GINLESLESLD 831 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC------eeCC------CCCccccCEEE
Confidence 00 00100 11111467777777776655666667777777777777765422 1121 12466777777
Q ss_pred ecCCCCCCCccccccCCC-CC-CCCCccCCccccccccCccceEeeccccC
Q psy17257 318 ISGTNLAGRGVAEFSSKG-SP-DVPYVTTDIPGLASRVDRPLEFLGLYGTK 366 (778)
Q Consensus 318 LSgn~l~~~~~~~~~~~~-s~-~~~~~~~~i~~l~~~~~~~L~~L~L~~t~ 366 (778)
+++|..... ........ .. -.......+|..+. ..++|++|.|.+|.
T Consensus 832 Ls~c~~L~~-~p~~~~nL~~L~Ls~n~i~~iP~si~-~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 832 LSGCSRLRT-FPDISTNISDLNLSRTGIEEVPWWIE-KFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCCcccc-ccccccccCEeECCCCCCccChHHHh-cCCCCCEEECCCCC
Confidence 777653221 10000000 00 00012234555553 66778888887765
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.4e-08 Score=99.66 Aligned_cols=130 Identities=28% Similarity=0.330 Sum_probs=55.7
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
+.++++|+|.++ .|+ .+..++..+.+|+.|+|++|.... +.
T Consensus 18 ~~~~~~L~L~~n-~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~---l~--------------------------------- 58 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIS--TIENLGATLDKLEVLDLSNNQITK---LE--------------------------------- 58 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----T---------------------------------
T ss_pred cccccccccccc-ccc--cccchhhhhcCCCEEECCCCCCcc---cc---------------------------------
Confidence 457889999998 564 345565556899999999998752 11
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcch
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~ 267 (778)
++ ..+++|+.|++++|.+ +.-+ ..+...+|+|++|++++|.+. +-.++..+..+ ++|++|+|.+|+++..
T Consensus 59 -----~l-~~L~~L~~L~L~~N~I-~~i~-~~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l-~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 59 -----GL-PGLPRLKTLDLSNNRI-SSIS-EGLDKNLPNLQELYLSNNKIS-DLNELEPLSSL-PKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -----T-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS----SCCCCGGGGG--TT--EEE-TT-GGGGS
T ss_pred -----Cc-cChhhhhhcccCCCCC-Cccc-cchHHhCCcCCEEECcCCcCC-ChHHhHHHHcC-CCcceeeccCCcccch
Confidence 12 5689999999999999 4421 113356999999999999997 43356778888 7999999999998752
Q ss_pred ---hhHhhcCCCCccEEeccCC
Q psy17257 268 ---NLDHICSLPLLRRLDISVS 286 (778)
Q Consensus 268 ---~~~~l~~L~~L~~LdLS~~ 286 (778)
-...+..+|+|+.||-..-
T Consensus 129 ~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 129 KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TTHHHHHHHH-TT-SEETTEET
T ss_pred hhHHHHHHHHcChhheeCCEEc
Confidence 2345788999999986544
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.65 E-value=9.2e-08 Score=121.10 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=114.6
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
.+|+.|+|+++.+..-.-..-..++|+.|+|+++..++. ++.+ ..+++|+.|+|++|.... .++... + ..+.
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~l-s~l~~Le~L~L~~c~~L~--~lp~si--~-~L~~ 682 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE--IPDL-SMATNLETLKLSDCSSLV--ELPSSI--Q-YLNK 682 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc--CCcc-ccCCcccEEEecCCCCcc--ccchhh--h-ccCC
Confidence 589999999998763211122367899999999865532 2233 347899999999997652 222100 0 0000
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
.+ .+.+ +.....+.++. . .++++|+.|++++|..+. .++ ...++|+.|++++|.+. .++
T Consensus 683 L~----~L~L---~~c~~L~~Lp~----~-i~l~sL~~L~Lsgc~~L~--~~p---~~~~nL~~L~L~~n~i~----~lP 741 (1153)
T PLN03210 683 LE----DLDM---SRCENLEILPT----G-INLKSLYRLNLSGCSRLK--SFP---DISTNISWLDLDETAIE----EFP 741 (1153)
T ss_pred CC----EEeC---CCCCCcCccCC----c-CCCCCCCEEeCCCCCCcc--ccc---cccCCcCeeecCCCccc----ccc
Confidence 00 0000 00001111111 1 256788888888876521 122 22467888888888776 455
Q ss_pred HHHhccccccEEEcCCCCCc---c---hhh-HhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEee
Q psy17257 246 FLAEFKDTLVSLVLFNVSIV---K---DNL-DHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~---~---~~~-~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDL 318 (778)
....+ ++|++|.+.++... + ... ......++|+.|++++|.... ..|. .+.++++|+.|++
T Consensus 742 ~~~~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------~lP~-----si~~L~~L~~L~L 809 (1153)
T PLN03210 742 SNLRL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPS-----SIQNLHKLEHLEI 809 (1153)
T ss_pred ccccc-cccccccccccchhhccccccccchhhhhccccchheeCCCCCCcc------ccCh-----hhhCCCCCCEEEC
Confidence 43355 67888877765421 1 011 112235789999999987632 2232 3688999999999
Q ss_pred cCCCC
Q psy17257 319 SGTNL 323 (778)
Q Consensus 319 Sgn~l 323 (778)
++|..
T Consensus 810 s~C~~ 814 (1153)
T PLN03210 810 ENCIN 814 (1153)
T ss_pred CCCCC
Confidence 99864
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=9.5e-08 Score=113.58 Aligned_cols=117 Identities=18% Similarity=0.083 Sum_probs=59.7
Q ss_pred CCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHH
Q psy17257 226 HLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSY 305 (778)
Q Consensus 226 ~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~ 305 (778)
+|+.||+|+|.++ .++.+ . ++|+.|.+++|.+.. ++.. ..+|+.|++++|.+ + .+ |
T Consensus 343 ~Lq~LdLS~N~Ls----~LP~l--p-~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~L-t---~L---P------ 398 (788)
T PRK15387 343 GLQELSVSDNQLA----SLPTL--P-SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRL-T---SL---P------ 398 (788)
T ss_pred ccceEecCCCccC----CCCCC--C-cccceehhhcccccc-Cccc---ccccceEEecCCcc-c---CC---C------
Confidence 5666666666665 34322 1 356666666666542 2211 24577777777765 2 11 1
Q ss_pred HHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCCC
Q psy17257 306 IIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGA 369 (778)
Q Consensus 306 ~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~~ 369 (778)
...++|+.||+|+|.+.+-+........-.-....++.||.-+. ..+.|++|.|.+|++..
T Consensus 399 --~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 399 --VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLSE 459 (788)
T ss_pred --CcccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHh-hccCCCeEECCCCCCCc
Confidence 11346777777777765321100000000000012234555442 56788888888888653
No 23
>KOG0618|consensus
Probab=98.63 E-value=2.6e-09 Score=123.66 Aligned_cols=107 Identities=23% Similarity=0.314 Sum_probs=61.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
...++|+.|+|++|.+ +. .....+.+++.|++|+||+|.++ .++ .+.++ ..|++|..++|.+.- .+.+..
T Consensus 380 ~~~~hLKVLhLsyNrL-~~-fpas~~~kle~LeeL~LSGNkL~----~Lp~tva~~-~~L~tL~ahsN~l~~--fPe~~~ 450 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRL-NS-FPASKLRKLEELEELNLSGNKLT----TLPDTVANL-GRLHTLRAHSNQLLS--FPELAQ 450 (1081)
T ss_pred ccccceeeeeeccccc-cc-CCHHHHhchHHhHHHhcccchhh----hhhHHHHhh-hhhHHHhhcCCceee--chhhhh
Confidence 5556666666666655 22 12234555666666666666665 443 35555 466666666666542 236667
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
+++|+.+|+|.|++ +.+.. .. .-.-|+|++||+|||.
T Consensus 451 l~qL~~lDlS~N~L--~~~~l--------~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNL--SEVTL--------PE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchh--hhhhh--------hh-hCCCcccceeeccCCc
Confidence 77777777777776 22211 11 1111677777777775
No 24
>KOG3207|consensus
Probab=98.52 E-value=1.7e-08 Score=108.52 Aligned_cols=243 Identities=21% Similarity=0.200 Sum_probs=150.1
Q ss_pred ccccC-CCCChHHHHHHHHHHHhcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-----cCCccEEecCCC
Q psy17257 46 FRCED-VKFPREISEKFLSMYEKSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKC 119 (778)
Q Consensus 46 ~~~~~-~~LP~ei~~~ll~~l~~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~ 119 (778)
|.++. ..+|.+....+.+.|..+.+.-+|.....+.. +-.+.--|+..+. ..+|++..|.++
T Consensus 64 Fik~~kV~~p~d~~~t~~ery~e~~s~~sd~~~~~si~------------nK~vE~iGfDki~akQsn~kkL~~IsLdn~ 131 (505)
T KOG3207|consen 64 FIKPGKVKFPTDLLRTFKERYYEKYSYSSDLESVLSIS------------NKQVEFIGFDKIAAKQSNLKKLREISLDNY 131 (505)
T ss_pred ccCCccCCCCccHHHHHHHHHHHhhcCCcchhhHhhhc------------CceeEEecHHHHHHHhhhHHhhhheeecCc
Confidence 34433 56778887777777665444223331122221 1122223444332 357888888888
Q ss_pred CCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCC
Q psy17257 120 ANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAP 199 (778)
Q Consensus 120 ~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~ 199 (778)
.+........++.|++++.|+|++|-+. .|.+ ...+..++|
T Consensus 132 -~V~~~~~~~~~k~~~~v~~LdLS~NL~~--nw~~------------------------------------v~~i~eqLp 172 (505)
T KOG3207|consen 132 -RVEDAGIEEYSKILPNVRDLDLSRNLFH--NWFP------------------------------------VLKIAEQLP 172 (505)
T ss_pred -cccccchhhhhhhCCcceeecchhhhHH--hHHH------------------------------------HHHHHHhcc
Confidence 5766555556678899999999998654 3322 024568899
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
+|+.|+++.|++....+ ...-..+++|+.|.|+.|+++ -. ++.. +..+ ++|+.|.|..|.....-...-.-++.|
T Consensus 173 ~Le~LNls~Nrl~~~~~-s~~~~~l~~lK~L~l~~CGls-~k-~V~~~~~~f-Psl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFIS-SNTTLLLSHLKQLVLNSCGLS-WK-DVQWILLTF-PSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred cchhcccccccccCCcc-ccchhhhhhhheEEeccCCCC-HH-HHHHHHHhC-CcHHHhhhhcccccceecchhhhhhHH
Confidence 99999999998732211 112235889999999999987 22 3443 4455 899999999885211111112235678
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccce
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLE 358 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~ 358 (778)
+.|||++|++...+. +. ..+.+|.|+.|+++.|.+..-...+. ++..-. ...|+|+
T Consensus 249 ~~LdLs~N~li~~~~---------~~-~~~~l~~L~~Lnls~tgi~si~~~d~-------------~s~~kt-~~f~kL~ 304 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQ---------GY-KVGTLPGLNQLNLSSTGIASIAEPDV-------------ESLDKT-HTFPKLE 304 (505)
T ss_pred hhccccCCccccccc---------cc-ccccccchhhhhccccCcchhcCCCc-------------cchhhh-cccccce
Confidence 999999999843211 11 37889999999999998754222111 001122 2678999
Q ss_pred EeeccccCC
Q psy17257 359 FLGLYGTKH 367 (778)
Q Consensus 359 ~L~L~~t~~ 367 (778)
+|.+..+++
T Consensus 305 ~L~i~~N~I 313 (505)
T KOG3207|consen 305 YLNISENNI 313 (505)
T ss_pred eeecccCcc
Confidence 999999884
No 25
>KOG0618|consensus
Probab=98.51 E-value=1.5e-08 Score=117.47 Aligned_cols=150 Identities=23% Similarity=0.256 Sum_probs=101.4
Q ss_pred CccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC-CccccchhhhhccccccccccccchhhhcccCCCCCCCcc
Q psy17257 110 HVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM-FPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLT 188 (778)
Q Consensus 110 ~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~-~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~ 188 (778)
.|++|.+.+| .+++..++.+. +..+|+.|+|+.|++. +|++
T Consensus 360 ~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas------------------------------------ 401 (1081)
T KOG0618|consen 360 ALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS------------------------------------ 401 (1081)
T ss_pred HHHHHHHhcC-cccccchhhhc-cccceeeeeecccccccCCHH------------------------------------
Confidence 4677777776 57777777664 3567888888888764 2221
Q ss_pred cchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchh
Q psy17257 189 YKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN 268 (778)
Q Consensus 189 ~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~ 268 (778)
...+++.|+.|+||||++ +. ++.-+..++.|+.|-.-+|.+. ..+.+.++ +.|+.++++.|+++...
T Consensus 402 -----~~~kle~LeeL~LSGNkL-~~--Lp~tva~~~~L~tL~ahsN~l~----~fPe~~~l-~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 402 -----KLRKLEELEELNLSGNKL-TT--LPDTVANLGRLHTLRAHSNQLL----SFPELAQL-PQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred -----HHhchHHhHHHhcccchh-hh--hhHHHHhhhhhHHHhhcCCcee----echhhhhc-CcceEEecccchhhhhh
Confidence 236777888888888887 33 4456667888888888888877 67777787 68888888888876544
Q ss_pred hHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 269 LDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 269 ~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
+...-.-++|++||+|+|.. +.+ .. ..+..+..+...|++-+
T Consensus 469 l~~~~p~p~LkyLdlSGN~~----l~~-d~------~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTR----LVF-DH------KTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhCCCcccceeeccCCcc----ccc-ch------hhhHHhhhhhheecccC
Confidence 43333337888888888874 122 11 12455666666676666
No 26
>KOG0617|consensus
Probab=98.42 E-value=5.9e-09 Score=98.81 Aligned_cols=154 Identities=22% Similarity=0.193 Sum_probs=113.3
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
..+++.|.||+| +++... +.+++ +.+|+.|++++|... ..+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vp-pnia~-l~nlevln~~nnqie---~lp--------------------------------- 72 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVP-PNIAE-LKNLEVLNLSNNQIE---ELP--------------------------------- 72 (264)
T ss_pred hhhhhhhhcccC-ceeecC-CcHHH-hhhhhhhhcccchhh---hcC---------------------------------
Confidence 356777888887 565321 34443 468999999887652 222
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcc
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVK 266 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~ 266 (778)
.-++++|+|+.|+++-|++ . .++.-++++|.|+.||+++|++. .. .+++ +..+ ..|+.|.|+++.+.
T Consensus 73 -----~~issl~klr~lnvgmnrl-~--~lprgfgs~p~levldltynnl~-e~-~lpgnff~m-~tlralyl~dndfe- 140 (264)
T KOG0617|consen 73 -----TSISSLPKLRILNVGMNRL-N--ILPRGFGSFPALEVLDLTYNNLN-EN-SLPGNFFYM-TTLRALYLGDNDFE- 140 (264)
T ss_pred -----hhhhhchhhhheecchhhh-h--cCccccCCCchhhhhhccccccc-cc-cCCcchhHH-HHHHHHHhcCCCcc-
Confidence 1137889999999998887 3 34557889999999999999987 43 3543 5556 68999999998874
Q ss_pred hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 267 DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 267 ~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
-++..++++++|+.|.+.+|..++ .|. -++.+..|+.|.|-||++.
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll~-------lpk-----eig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLLS-------LPK-----EIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cCChhhhhhcceeEEeeccCchhh-------CcH-----HHHHHHHHHHHhcccceee
Confidence 356779999999999999988732 232 3678899999999999864
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.36 E-value=3.8e-07 Score=109.00 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=34.5
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHH-HHHhcCCCCceeecCCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLE-VLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~-~L~~~~~~L~~L~Ls~c~~~ 148 (778)
.+|+.|+|++|.++.-. ..+ ..+|+.|+|++| +++. ++ .+ .++|+.|++++|.+.
T Consensus 220 ~nL~~L~Ls~N~LtsLP-~~l-~~~L~~L~Ls~N-~L~~--LP~~l---~s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 220 GNIKTLYANSNQLTSIP-ATL-PDTIQEMELSIN-RITE--LPERL---PSALQSLDLFHNKIS 275 (754)
T ss_pred cCCCEEECCCCccccCC-hhh-hccccEEECcCC-ccCc--CChhH---hCCCCEEECcCCccC
Confidence 37889999988876311 112 246888888887 4542 21 22 247888888877653
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.33 E-value=8.5e-07 Score=106.02 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=51.0
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
++|+.|++++|.+ +. ++..+ .++|+.|++++|.++ .++.- +.++|+.|++++|.++. ++..+ .++|
T Consensus 262 s~L~~L~Ls~N~L-~~--LP~~l--~~sL~~L~Ls~N~Lt----~LP~~--lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL 327 (754)
T PRK15370 262 SALQSLDLFHNKI-SC--LPENL--PEELRYLSVYDNSIR----TLPAH--LPSGITHLNVQSNSLTA-LPETL--PPGL 327 (754)
T ss_pred CCCCEEECcCCcc-Cc--ccccc--CCCCcEEECCCCccc----cCccc--chhhHHHHHhcCCcccc-CCccc--cccc
Confidence 3677777777766 32 22111 246777777777666 33321 11356666666666542 22222 2466
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.|++++|.+ + .+ |. .-.++|+.|++++|++.
T Consensus 328 ~~L~Ls~N~L-t---~L---P~-------~l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 328 KTLEAGENAL-T---SL---PA-------SLPPELQVLDVSKNQIT 359 (754)
T ss_pred eeccccCCcc-c---cC---Ch-------hhcCcccEEECCCCCCC
Confidence 6667766665 2 01 21 11256777777777653
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=5.8e-07 Score=106.99 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=34.8
Q ss_pred CceeEEEeeCCccCHHH-----HH----------hh--ccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSG-----MQ----------KL--LSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~-----l~----------~L--~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~ 148 (778)
++|++|+|++|.++.-. +. .+ ...+|+.|++++| +++. ++ ...++|+.|++++|.+.
T Consensus 242 ~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt~--LP---~~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTS--LP---VLPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCC-cccc--cc---ccccccceeECCCCccc
Confidence 56777777777654321 11 11 0245777888887 4652 22 23468999999999765
No 30
>KOG0617|consensus
Probab=98.26 E-value=1e-08 Score=97.30 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=115.2
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
.++++|.|+.++++-.....-...+|+.|+++++ .+++- ...+ .+++.|+.|+++-|+... .+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~l-p~~i-ssl~klr~lnvgmnrl~~---lp----------- 95 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEEL-PTSI-SSLPKLRILNVGMNRLNI---LP----------- 95 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhc-Chhh-hhchhhhheecchhhhhc---Cc-----------
Confidence 4788899999986633222222457999999997 56431 1233 457899999999877642 11
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
.+| +.+|.|+.|++++|.+ +...++--+..+..|+.|.++.|.+. -++
T Consensus 96 --------------------------rgf-gs~p~levldltynnl-~e~~lpgnff~m~tlralyl~dndfe----~lp 143 (264)
T KOG0617|consen 96 --------------------------RGF-GSFPALEVLDLTYNNL-NENSLPGNFFYMTTLRALYLGDNDFE----ILP 143 (264)
T ss_pred --------------------------ccc-CCCchhhhhhcccccc-ccccCCcchhHHHHHHHHHhcCCCcc----cCC
Confidence 245 7889999999999998 66666555666788999999999886 444
Q ss_pred -HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 246 -FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 246 -~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
.++++ ++|+.|.+..+.+. ..+..++.++.|+.|.|.+|+.
T Consensus 144 ~dvg~l-t~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 144 PDVGKL-TNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhhhh-cceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 48888 79999999998876 3688899999999999999987
No 31
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.21 E-value=4.3e-05 Score=98.01 Aligned_cols=326 Identities=16% Similarity=0.150 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHHHhcCCC-chhhhhhHHhhhccCc
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKD--RPVLSSLTKRHIITTILNGMHMHLE-DDTMMRNGCLTLCQFK 499 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~--~~~~~~~~~~~~i~~LL~am~~~~~-~~~l~~n~~l~l~~~~ 499 (778)
..++..++..++.. +...+..+.+.||+|+...- ..+...-....+|-.|+..++.-+. +.-+++.....|.|-.
T Consensus 98 ~GaIppLV~LL~sG--s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs 175 (2102)
T PLN03200 98 GGCIPPLLSLLKSG--SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLC 175 (2102)
T ss_pred cCChHHHHHHHHCC--CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHh
Confidence 56777788888776 46688899999999998641 1111112235667777777765432 2234455444544433
Q ss_pred CCccccccHHH------HHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHH
Q psy17257 500 IPQDVQFDYDR------LVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDR 573 (778)
Q Consensus 500 il~~~~f~~~~------~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~ 573 (778)
.-.+ ++.+ +...+++.+.. . | +.+|.-|+.++..++.. +++.+..+.+.|.|..++++++..
T Consensus 176 ~~~e---n~~~~IIeaGaVp~LV~LLsS-~-d------~~lQ~eAa~aLa~Lass-~ee~~~aVIeaGaVP~LV~LL~sg 243 (2102)
T PLN03200 176 GSTD---GFWSATLEAGGVDILVKLLSS-G-N------SDAQANAASLLARLMMA-FESSISKVLDAGAVKQLLKLLGQG 243 (2102)
T ss_pred cCcc---chHHHHHHcCCHHHHHHHHcC-C-C------HHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHccC
Confidence 3222 1211 23355555543 2 4 77888888877555433 355677777889999999999752
Q ss_pred HhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCC-------CcHHHHHHHHhhhhhhhhhhhhhhc
Q psy17257 574 IEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFP-------EKDELLRNMMGLLGNVAEVKSLRPK 646 (778)
Q Consensus 574 ~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~-------~~~~l~~~~lgll~niaev~~l~~~ 646 (778)
.. ..+-+-+-.+|+||.-.++++.+..++.||++.+++++..-. ....++++.+..|+||+.-.
T Consensus 244 ~~----~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~----- 314 (2102)
T PLN03200 244 NE----VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM----- 314 (2102)
T ss_pred CC----hHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-----
Confidence 11 122244556789999999999999999999999999997421 23568999999999999442
Q ss_pred ccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHh--ccCCC-----------ccccccccHH----HHHHHHHHHhcc-
Q psy17257 647 LMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIA--SDGPE-----------AWTIRYPARE----KVLAKMVEAIER- 708 (778)
Q Consensus 647 l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~--~~~~~-----------~w~~~~~~r~----~~~~~~~~~i~~- 708 (778)
..++..+.+++++.. ..++.=-++|.|+-++ .+++. .|++....|. -+.+....|+..
T Consensus 315 ---~~ll~~L~~ll~s~r-d~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl 390 (2102)
T PLN03200 315 ---SALILYLGELSESPR-SPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL 390 (2102)
T ss_pred ---hhhHHHHHHhhcccc-hHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh
Confidence 457888888888743 3444445667776662 22221 2554322111 112333334322
Q ss_pred CCCCC-ccceecc-cchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 709 WPIDS-ERNINYR-SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 709 w~~~~-~~~v~yr-sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.+.+. ++.+... .=+|+..||.+.. +++|-=|+||+..+|.. +..++..+.+.||++.|-.+..+++
T Consensus 391 ~gN~~l~~~L~~~daik~LV~LL~~~~-~evQ~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s 459 (2102)
T PLN03200 391 YGNAYLSRKLNHAEAKKVLVGLITMAT-ADVQEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSS 459 (2102)
T ss_pred cCChHHHHHHHhccchhhhhhhhccCC-HHHHHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 22222 1122111 1257888888664 69999999999999985 5788999999999999988887653
No 32
>KOG1947|consensus
Probab=98.19 E-value=2e-06 Score=98.58 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=58.3
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCC----Ccc-----
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS----IVK----- 266 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~----~~~----- 266 (778)
..|++|+.|.+.+|.-+++.++..+...+|+|++|++++|....+. .+..+...+++|+.|.+.... ++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~-~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS-GLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-HHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 4588888888888873388888888888888888888877654233 243332223666666554433 111
Q ss_pred -------hhh-HhhcCCCCccEEeccCCCC
Q psy17257 267 -------DNL-DHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 267 -------~~~-~~l~~L~~L~~LdLS~~~~ 288 (778)
... ..+..+++|+++.+..+..
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 111 1245678888888887773
No 33
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.18 E-value=5.8e-05 Score=96.83 Aligned_cols=211 Identities=18% Similarity=0.148 Sum_probs=158.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccH-HHH--HHHHhcC
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETA-INC--ARFLNNG 608 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p-~~c--~~f~~~~ 608 (778)
..+|.-|+.++..+... ++-+..+...|.+.-++++++... ...=+-+-.+|.+++-... +.. ..+++.|
T Consensus 72 ~~vk~nAaaaL~nLS~~--e~nk~~Iv~~GaIppLV~LL~sGs-----~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~G 144 (2102)
T PLN03200 72 LGAKVNAAAVLGVLCKE--EDLRVKVLLGGCIPPLLSLLKSGS-----AEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG 144 (2102)
T ss_pred HHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHHHCCC-----HHHHHHHHHHHHHHHcCcchhhhhhhhhhhcC
Confidence 56777777777777655 555666667889999999986542 2223556667788765432 323 3478999
Q ss_pred ChHHHHHHHhhCCC-cHHHHHHHHhhhhhhhhhhhhh-hcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCC
Q psy17257 609 GMELFLNCLQYFPE-KDELLRNMMGLLGNVAEVKSLR-PKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE 686 (778)
Q Consensus 609 g~~~~~~~l~~f~~-~~~l~~~~lgll~niaev~~l~-~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~ 686 (778)
|+..+++.++.-.. +..+++...+.|.|++-.++=+ ...++...+..+..+|.+ ++-++.++||.+|+++++..++
T Consensus 145 aVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS--~d~~lQ~eAa~aLa~Lass~ee 222 (2102)
T PLN03200 145 VVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS--GNSDAQANAASLLARLMMAFES 222 (2102)
T ss_pred ChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCChH
Confidence 99999999996432 2336677789999999998744 445677889999999988 4568889999999999985332
Q ss_pred ccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchH
Q psy17257 687 AWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGI 766 (778)
Q Consensus 687 ~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~ 766 (778)
.|+.|.+ .--..++.++|+....+.+|-.|+||+.++|+.+ ..+-..+++.||+
T Consensus 223 -------~~~aVIe------------------aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s-~e~r~~Iv~aGgI 276 (2102)
T PLN03200 223 -------SISKVLD------------------AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS-KEAKQAIADAGGI 276 (2102)
T ss_pred -------HHHHHHH------------------CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCH
Confidence 3444433 3345789999987777899999999999999974 6788899999999
Q ss_pred HHHHHHhhccC
Q psy17257 767 ELLQNLLDNEN 777 (778)
Q Consensus 767 ~~l~~~~~~~~ 777 (778)
+.|-++...|.
T Consensus 277 p~LI~lL~sp~ 287 (2102)
T PLN03200 277 PALINATVAPS 287 (2102)
T ss_pred HHHHHHHhCcc
Confidence 99988876554
No 34
>KOG1259|consensus
Probab=98.18 E-value=5.2e-07 Score=92.68 Aligned_cols=108 Identities=28% Similarity=0.327 Sum_probs=80.4
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHH-HhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFL-AEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L-~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
.-.|.++.|++|.|.+..- . .+..+++|++||+|+|.++ .+.+. .++ .|.++|+|++|.+. .+..+++
T Consensus 304 KL~Pkir~L~lS~N~i~~v---~-nLa~L~~L~~LDLS~N~Ls----~~~Gwh~KL-GNIKtL~La~N~iE--~LSGL~K 372 (490)
T KOG1259|consen 304 KLAPKLRRLILSQNRIRTV---Q-NLAELPQLQLLDLSGNLLA----ECVGWHLKL-GNIKTLKLAQNKIE--TLSGLRK 372 (490)
T ss_pred hhccceeEEeccccceeee---h-hhhhcccceEeecccchhH----hhhhhHhhh-cCEeeeehhhhhHh--hhhhhHh
Confidence 6678999999999988322 2 3557899999999999887 56553 356 58889999887763 3455778
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+-+|..||+++|++-. . +... .++++|.|++|.+-+|.+.
T Consensus 373 LYSLvnLDl~~N~Ie~----l-----deV~-~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEE----L-----DEVN-HIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhheeccccccchhh----H-----HHhc-ccccccHHHHHhhcCCCcc
Confidence 8889999999998711 1 2222 3788999999999999875
No 35
>KOG1259|consensus
Probab=98.16 E-value=6.8e-07 Score=91.83 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=98.3
Q ss_pred CCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcc
Q psy17257 109 HHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLT 188 (778)
Q Consensus 109 ~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~ 188 (778)
+.|++||||+| .|+. +..-.+..+.++.|+++.|+...-+
T Consensus 284 q~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N~i~~v~------------------------------------- 323 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQNRIRTVQ------------------------------------- 323 (490)
T ss_pred hhhhhcccccc-chhh--hhhhhhhccceeEEeccccceeeeh-------------------------------------
Confidence 36888898887 4543 2111134678889999888765211
Q ss_pred cchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcc-h
Q psy17257 189 YKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVK-D 267 (778)
Q Consensus 189 ~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~-~ 267 (778)
. +..+++|+.|++|+|.+ +. +.-+-..+.|.+.|.++.|.+. +++++.++ -+|..|++.+|++.. +
T Consensus 324 ----n-La~L~~L~~LDLS~N~L-s~--~~Gwh~KLGNIKtL~La~N~iE----~LSGL~KL-YSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 324 ----N-LAELPQLQLLDLSGNLL-AE--CVGWHLKLGNIKTLKLAQNKIE----TLSGLRKL-YSLVNLDLSSNQIEELD 390 (490)
T ss_pred ----h-hhhcccceEeecccchh-Hh--hhhhHhhhcCEeeeehhhhhHh----hhhhhHhh-hhheeccccccchhhHH
Confidence 1 26789999999999988 33 2223346889999999999998 89999999 699999999999864 5
Q ss_pred hhHhhcCCCCccEEeccCCCC
Q psy17257 268 NLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~ 288 (778)
.+..|+++|.|++|.+.+|++
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred HhcccccccHHHHHhhcCCCc
Confidence 677899999999999999997
No 36
>KOG2982|consensus
Probab=98.13 E-value=8.6e-06 Score=83.98 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=79.6
Q ss_pred ceeEEEeeCCccCHHHH-Hhhc--cCCccEEecCCCCCCCH-hHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 87 HMKSVKLRNAEVSDSGM-QKLL--SHHVQELELIKCANVSQ-ASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l-~~L~--~~~L~~LdLs~~~~lt~-~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
-+.-+.+.+|.|...|- ..+. ++.+++|||.+| .|++ ..+.++.+.++.|+.|+|+.|....+ +.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~-------- 114 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD--IK-------- 114 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc--cc--------
Confidence 34566777888765543 3443 678999999998 6875 44567778999999999999887532 11
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM 236 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~ 236 (778)
..-....+|++|-|.|+.+ +.......+..+|.++.|.+|.|+
T Consensus 115 ------------------------------~lp~p~~nl~~lVLNgT~L-~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 115 ------------------------------SLPLPLKNLRVLVLNGTGL-SWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ------------------------------cCcccccceEEEEEcCCCC-Chhhhhhhhhcchhhhhhhhccch
Confidence 0002456899999999888 666677788889999999999884
No 37
>KOG0472|consensus
Probab=98.13 E-value=8.8e-07 Score=94.41 Aligned_cols=112 Identities=23% Similarity=0.228 Sum_probs=88.5
Q ss_pred hhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHh
Q psy17257 193 GYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDH 271 (778)
Q Consensus 193 ~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~ 271 (778)
.+++++++|..|++++|-+ .+ ++.-++.+-.|+.||+|.|.+. .++ ++..+ ..|+.+..+++++..-.+..
T Consensus 429 ~~l~~l~kLt~L~L~NN~L-n~--LP~e~~~lv~Lq~LnlS~NrFr----~lP~~~y~l-q~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLL-ND--LPEEMGSLVRLQTLNLSFNRFR----MLPECLYEL-QTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred HHHHhhhcceeeecccchh-hh--cchhhhhhhhhheecccccccc----cchHHHhhH-HHHHHHHhccccccccChHH
Confidence 3568999999999999987 43 4445667778999999999887 554 45555 57787877888877655566
Q ss_pred hcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 272 ICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 272 l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.++.+|..||+.+|.+.+ .|. +++++.+|++|+++||++.
T Consensus 501 l~nm~nL~tLDL~nNdlq~-------IPp-----~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQ-------IPP-----ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchhh-------CCh-----hhccccceeEEEecCCccC
Confidence 8999999999999998721 132 6899999999999999985
No 38
>KOG1947|consensus
Probab=98.12 E-value=5.9e-06 Score=94.69 Aligned_cols=170 Identities=25% Similarity=0.292 Sum_probs=101.1
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
+++|+.|+++++..+++.++..++..|++|+.|.+.+|..+++.++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl---------------------------------- 287 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL---------------------------------- 287 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH----------------------------------
Confidence 4566666666665566666666666666666666666654332221
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc----ccCCcc----------cc-hH-HHhcc
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM----FLFDNK----------DL-SF-LAEFK 251 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~----i~~~~~----------~l-~~-L~~l~ 251 (778)
..+...+++|++|++++|..+++.++..+..++|+|+.|.+.... ++ +.. .+ .. +..+
T Consensus 288 ----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~-~~~l~~~~~~~~d~~~~~~~~~~- 361 (482)
T KOG1947|consen 288 ----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLT-DLSLSGLLTLTSDDLAELILRSC- 361 (482)
T ss_pred ----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHH-HHHHHHhhccCchhHhHHHHhcC-
Confidence 134578899999999999876777788788889988887766443 22 100 01 11 2334
Q ss_pred ccccEEEcCCCCCcchh-hHhhcCCCC--------------ccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEE
Q psy17257 252 DTLVSLVLFNVSIVKDN-LDHICSLPL--------------LRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSL 316 (778)
Q Consensus 252 ~~L~~L~L~~~~~~~~~-~~~l~~L~~--------------L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~L 316 (778)
++|+.+.+..+...+.. ...+.++++ ++.|+++.+...++ ..+......+..+..+
T Consensus 362 ~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~---------~~l~~~~~~~~~~~~l 432 (482)
T KOG1947|consen 362 PKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD---------KGLRCLADSCSNLKDL 432 (482)
T ss_pred CCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc---------cchHHHhhhhhccccC
Confidence 67777777766643322 223344444 46777777765332 1222212227778888
Q ss_pred eecCCCCCCC
Q psy17257 317 DISGTNLAGR 326 (778)
Q Consensus 317 DLSgn~l~~~ 326 (778)
+++++...+.
T Consensus 433 ~~~~~~~~~~ 442 (482)
T KOG1947|consen 433 DLSGCRVITL 442 (482)
T ss_pred CccCcccccc
Confidence 8888876544
No 39
>KOG1859|consensus
Probab=98.09 E-value=2.2e-07 Score=105.14 Aligned_cols=109 Identities=26% Similarity=0.302 Sum_probs=81.7
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
.-+|.|++|||+.|++ ++ +. .+..|++|++||||+|.+. .++.++.-..+|..|++++|.++. +..+.+|
T Consensus 184 qll~ale~LnLshNk~-~~--v~-~Lr~l~~LkhLDlsyN~L~----~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKF-TK--VD-NLRRLPKLKHLDLSYNCLR----HVPQLSMVGCKLQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHhhhhccchhhh-hh--hH-HHHhcccccccccccchhc----cccccchhhhhheeeeecccHHHh--hhhHHhh
Confidence 5678999999999999 54 23 6778999999999999998 666655433469999999998763 4557789
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
++|++||+|+|-+ .+ + .-|. .++.+..|+.|.+-||.+.
T Consensus 254 ksL~~LDlsyNll-~~---h-----seL~-pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLL-SE---H-----SELE-PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhh-hc---c-----hhhh-HHHHHHHHHHHhhcCCccc
Confidence 9999999999977 21 1 1122 1556667777777777654
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=2.9e-05 Score=79.24 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=136.3
Q ss_pred CceeEEEeeCCccCHHHHHhhc-----cCCccEEecCCCCCCCHh-------HH----HHHHhcCCCCceeecCCCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKCANVSQA-------SL----EVLNMSSDQLYSLSLGPHCSMF 149 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~-------~l----~~L~~~~~~L~~L~Ls~c~~~~ 149 (778)
..++.++|++|.|+..+.+.++ -.+|+..++|.- +|+. .+ +.+. .|+.|+..+||.|.+-.
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAFGS 106 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccccCc
Confidence 3688999999999998888776 357888887764 3331 11 1232 58999999999987742
Q ss_pred ccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccCh---hHHH--------
Q psy17257 150 PDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQ---SICT-------- 218 (778)
Q Consensus 150 ~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~---~~l~-------- 218 (778)
...+. + .+++++-..|.+|.+++|.+ .. .-+.
T Consensus 107 -~~~e~-------------------L----------------~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~ 149 (388)
T COG5238 107 -EFPEE-------------------L----------------GDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAY 149 (388)
T ss_pred -ccchH-------------------H----------------HHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHH
Confidence 11110 0 15668888999999999987 32 1111
Q ss_pred -HHhccCCCCCeEeccCccccCCcccchH--HHhccccccEEEcCCCCCcch-----hhHhhcCCCCccEEeccCCCCCC
Q psy17257 219 -QLYRDMPHLTHLNLSKCMFLFDNKDLSF--LAEFKDTLVSLVLFNVSIVKD-----NLDHICSLPLLRRLDISVSSDYP 290 (778)
Q Consensus 219 -~~~~~lp~L~~LdLS~~~i~~~~~~l~~--L~~l~~~L~~L~L~~~~~~~~-----~~~~l~~L~~L~~LdLS~~~~~~ 290 (778)
.-..+-|.|++.+...|.+.++.....+ +..- .+|+.+.+..|.+-.. +...++.+++|+.|||.+|.+ +
T Consensus 150 nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf-t 227 (388)
T COG5238 150 NKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-T 227 (388)
T ss_pred HhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch-h
Confidence 1134568999999999998744322222 3343 5899999999987543 233466789999999999987 3
Q ss_pred CCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCcccc
Q psy17257 291 DYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAE 330 (778)
Q Consensus 291 ~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~ 330 (778)
-.| ...+.......+.|+.|.+..|-+.+.|+..
T Consensus 228 ~~g------S~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 228 LEG------SRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred hhh------HHHHHHHhcccchhhhccccchhhccccHHH
Confidence 222 2456666778888999999999998887643
No 41
>KOG0166|consensus
Probab=98.00 E-value=0.00084 Score=75.55 Aligned_cols=340 Identities=18% Similarity=0.246 Sum_probs=229.0
Q ss_pred hcCChHHHHHHHHHHHHHhccccccCChHH-----HHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCC--------
Q psy17257 395 AYIDRPEMLQQVLNDLYHIFRYDTCVDIEH-----ALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPV-------- 461 (778)
Q Consensus 395 ~y~~R~~~~~~aL~~L~~l~~~~~~~~~~e-----~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~-------- 461 (778)
.|.+.+.....+...++.++..+...++.+ ++.-.++.+..+. +..+|+++.-+|.||+.+...+.
T Consensus 75 ~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 75 LYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 455555445555555566665455444433 3445666665332 34679999989999988543321
Q ss_pred ----------------------------CChHHHHHHHH-----HHHHHHhcCCCchhhhhhHHhhhccCcCCcc--ccc
Q psy17257 462 ----------------------------LSSLTKRHIIT-----TILNGMHMHLEDDTMMRNGCLTLCQFKIPQD--VQF 506 (778)
Q Consensus 462 ----------------------------~~~~~~~~~i~-----~LL~am~~~~~~~~l~~n~~l~l~~~~il~~--~~f 506 (778)
.++..|.-+++ -||..+ .-++...+.||.-.+|.|.---.+ .+|
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l-~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL-NKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh-ccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 12222222222 222222 112223578888777777744433 356
Q ss_pred cHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHH
Q psy17257 507 DYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVA 586 (778)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~ 586 (778)
|--+-+--++..+..+. | +.+...|+-.++.++.. +.+...++-+.|.+..+++++..... .+.-=+
T Consensus 233 ~~v~~iLp~L~~ll~~~-D------~~Vl~Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~~~-----~v~~Pa 299 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHST-D------EEVLTDACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHSSP-----KVVTPA 299 (514)
T ss_pred HHHHHHHHHHHHHHhcC-C------HHHHHHHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCCCc-----ccccHH
Confidence 65555556677777666 7 88888888888888776 56666677799999999988865532 222346
Q ss_pred HHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCC
Q psy17257 587 WSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSD 665 (778)
Q Consensus 587 ~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~ 665 (778)
+.++=||+--+-..=+..|+.|++..|...+..-+ ++.+...+.=++.||+-- ++-....|+..++..+.++|++.
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-- 376 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-- 376 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--
Confidence 67788877666666688999999999999999765 333667688888888755 44556789999999999999994
Q ss_pred CchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHH
Q psy17257 666 GIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWAL 745 (778)
Q Consensus 666 ~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~ 745 (778)
+.+..-=||=+|+|+.+.|...| ...|++. . + -+||+.||.|-++.- ..=++=|+
T Consensus 377 ef~~rKEAawaIsN~ts~g~~~q----------i~yLv~~--------g-i-----I~plcdlL~~~D~~i-i~v~Ld~l 431 (514)
T KOG0166|consen 377 EFDIRKEAAWAISNLTSSGTPEQ----------IKYLVEQ--------G-I-----IKPLCDLLTCPDVKI-ILVALDGL 431 (514)
T ss_pred chHHHHHHHHHHHhhcccCCHHH----------HHHHHHc--------C-C-----chhhhhcccCCChHH-HHHHHHHH
Confidence 67788889999999999774222 2333321 1 1 179999997776665 66677777
Q ss_pred HHhcc---cCC----ccccchhhhhchHHHHHHHhhccC
Q psy17257 746 ANLTK---VYP----EKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 746 ~~~~~---~~~----~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.++-. +.. +.||.|+++.||++.++.+..|.+
T Consensus 432 ~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen 470 (514)
T KOG0166|consen 432 ENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHEN 470 (514)
T ss_pred HHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcccc
Confidence 76543 333 789999999999999999998865
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.00 E-value=2.6e-05 Score=71.21 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=96.7
Q ss_pred hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhh
Q psy17257 559 RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638 (778)
Q Consensus 559 ~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~nia 638 (778)
+.|.++.+++.+++.. ..+.+.++.+++|++..+|+.+..|++.++++.++++|.. +++.++...++.|+|++
T Consensus 5 ~~~~i~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 5 QAGGLPALVSLLSSSD-----ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLA 77 (120)
T ss_pred HcCChHHHHHHHHcCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHc
Confidence 4566777777775442 4666889999999999999999999999999999999996 47889999999999999
Q ss_pred hhhh-hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 639 EVKS-LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 639 ev~~-l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
.... -+..+.+...++.+.++|++ ++.++.-.|+.+|++|++
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLAS 120 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhhC
Confidence 8874 44555667789999999988 478999999999999864
No 43
>KOG0472|consensus
Probab=97.90 E-value=5.6e-06 Score=88.45 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=113.8
Q ss_pred cccchhhHhhccCCCCceeEEEeeCCccCH--HHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC
Q psy17257 71 IVIDSFVDTFLTKDITHMKSVKLRNAEVSD--SGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 71 ~l~d~~~~~f~~~~~~~L~~L~L~~~~isd--~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~ 148 (778)
++++--...|.....--+++++++.+++.. .++..+. .-.+.++++++ .++ -+.......++|..|+|++|-.-
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lk-elvT~l~lsnn-~is--fv~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELK-ELVTDLVLSNN-KIS--FVPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHH-HHHHHHHhhcC-ccc--cchHHHHhhhcceeeecccchhh
Confidence 355544455654333458899999888653 2222221 12455666665 342 12222245689999999988552
Q ss_pred CccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCC
Q psy17257 149 FPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLT 228 (778)
Q Consensus 149 ~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~ 228 (778)
.++ .++ +.+..|+.|+++.|+| . .++..+..+..|+
T Consensus 449 ---~LP-------------------------------------~e~-~~lv~Lq~LnlS~NrF-r--~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 449 ---DLP-------------------------------------EEM-GSLVRLQTLNLSFNRF-R--MLPECLYELQTLE 484 (565)
T ss_pred ---hcc-------------------------------------hhh-hhhhhhheeccccccc-c--cchHHHhhHHHHH
Confidence 222 022 5566799999999988 3 3555777777788
Q ss_pred eEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 229 HLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 229 ~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
.+-.|.|++. ..+.+++.++ .+|+.|+|.+|.+. .+|+.+++|++|+||++++|++
T Consensus 485 tllas~nqi~--~vd~~~l~nm-~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 485 TLLASNNQIG--SVDPSGLKNM-RNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHhcccccc--ccChHHhhhh-hhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 8888888886 2234568889 79999999998865 5788999999999999999997
No 44
>KOG4237|consensus
Probab=97.86 E-value=1.4e-06 Score=92.92 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHH
Q psy17257 50 DVKFPREISEKFLSMYEKSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLE 128 (778)
Q Consensus 50 ~~~LP~ei~~~ll~~l~~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~ 128 (778)
+..||++..+ +....++ ++.--.+.|+.. .+|++|+|++|.|+..+..+|. .+.|.+|-+.++++|++-. .
T Consensus 62 P~~LP~~tve----irLdqN~-I~~iP~~aF~~l--~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k 133 (498)
T KOG4237|consen 62 PANLPPETVE----IRLDQNQ-ISSIPPGAFKTL--HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-K 133 (498)
T ss_pred cccCCCcceE----EEeccCC-cccCChhhccch--hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-h
Confidence 4455665433 2123333 554455667654 5788888888887766665554 4556666666645676411 2
Q ss_pred HHHhcCCCCceeecCCCCC
Q psy17257 129 VLNMSSDQLYSLSLGPHCS 147 (778)
Q Consensus 129 ~L~~~~~~L~~L~Ls~c~~ 147 (778)
...+.+..|+.|.+.-|..
T Consensus 134 ~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred hHhhhHHHHHHHhcChhhh
Confidence 2223345666666655544
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.75 E-value=6.7e-05 Score=89.07 Aligned_cols=108 Identities=21% Similarity=0.182 Sum_probs=77.0
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
.++.|+|++|.+ ++. ++..+..+++|+.|+|++|.+. + .++ .+..+ ++|+.|+|++|++++.++..++++++|
T Consensus 419 ~v~~L~L~~n~L-~g~-ip~~i~~L~~L~~L~Ls~N~l~-g--~iP~~~~~l-~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGL-RGF-IPNDISKLRHLQSINLSGNSIR-G--NIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCc-ccc-CCHHHhCCCCCCEEECCCCccc-C--cCChHHhCC-CCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 377888888887 543 3335677888888898888886 4 233 47777 688888888888888788888888888
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
++||+++|.+ + |.. |. .+ .....++..+++++|..
T Consensus 493 ~~L~Ls~N~l-~--g~i---P~-~l---~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNSL-S--GRV---PA-AL---GGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCcc-c--ccC---Ch-HH---hhccccCceEEecCCcc
Confidence 8888888876 2 333 32 11 22245677888888853
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.74 E-value=2.2e-05 Score=63.19 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=6.9
Q ss_pred hcCCCCCEEeecCCC
Q psy17257 308 FKLPHLVSLDISGTN 322 (778)
Q Consensus 308 ~~lp~L~~LDLSgn~ 322 (778)
..+++|++|++++|+
T Consensus 46 ~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 46 SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTSTTESEEEETSSS
T ss_pred cCCCCCCEEeCcCCc
Confidence 444444444444443
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.72 E-value=3.2e-05 Score=86.75 Aligned_cols=107 Identities=27% Similarity=0.303 Sum_probs=54.5
Q ss_pred cCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc-ccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 197 KAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM-FLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 197 ~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..++|+.|++++|.+ ++ ++........|+.|++++|. +. .+..+.++ .++..|.+.++++.. .+..+..+
T Consensus 184 ~~~~L~~L~ls~N~i-~~--l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~-~~l~~l~l~~n~~~~-~~~~~~~l 254 (394)
T COG4886 184 NLSNLNNLDLSGNKI-SD--LPPEIELLSALEELDLSNNSIIE----LLSSLSNL-KNLSGLELSNNKLED-LPESIGNL 254 (394)
T ss_pred hhhhhhheeccCCcc-cc--CchhhhhhhhhhhhhhcCCccee----cchhhhhc-ccccccccCCceeee-ccchhccc
Confidence 344555555555544 22 11111222335555555552 22 23334444 344444444444322 13456677
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
++|+.|++++|.+ + + +.. +..+.+|+.||++++.+..
T Consensus 255 ~~l~~L~~s~n~i-~-~----------i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 255 SNLETLDLSNNQI-S-S----------ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccceeccccccc-c-c----------ccc-ccccCccCEEeccCccccc
Confidence 7788888888776 1 1 111 5677888888888887653
No 48
>KOG2123|consensus
Probab=97.63 E-value=1.5e-05 Score=81.56 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=87.2
Q ss_pred cCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcc-hhhHhhcCC
Q psy17257 197 KAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSL 275 (778)
Q Consensus 197 ~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L 275 (778)
-+.+.+.||..||.+ +| +. ++..+|.|++|.||-|.|+ .+..+..| ++|+.|.|..|.+.+ +-+.-+.++
T Consensus 17 dl~~vkKLNcwg~~L-~D--Is-ic~kMp~lEVLsLSvNkIs----sL~pl~rC-trLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGL-DD--IS-ICEKMPLLEVLSLSVNKIS----SLAPLQRC-TRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHHhhhhcccCCCc-cH--HH-HHHhcccceeEEeeccccc----cchhHHHH-HHHHHHHHHhcccccHHHHHHHhcC
Confidence 355778999999999 55 44 8999999999999999999 89999999 799999999999865 455668899
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEe
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LD 317 (778)
|+|+.|-|-.|+.....| ..+=...+..||+|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag------~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAG------QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccc------hhHHHHHHHHcccchhcc
Confidence 999999999998743322 133334678999999997
No 49
>KOG2982|consensus
Probab=97.58 E-value=0.00011 Score=76.16 Aligned_cols=129 Identities=19% Similarity=0.181 Sum_probs=90.4
Q ss_pred hhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHH-HhccccccEEEcCCCCCcchhh-Hh
Q psy17257 194 YILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFL-AEFKDTLVSLVLFNVSIVKDNL-DH 271 (778)
Q Consensus 194 ~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L-~~l~~~L~~L~L~~~~~~~~~~-~~ 271 (778)
|...++.++.|+|.+|.+...+++..++.++|.|+.|+||+|++.. +|..+ ... .+|++|.|.+..+.+... ..
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s---~I~~lp~p~-~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS---DIKSLPLPL-KNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC---ccccCcccc-cceEEEEEcCCCCChhhhhhh
Confidence 4577889999999999994446788899999999999999999872 23333 356 599999999988876433 34
Q ss_pred hcCCCCccEEeccCCCC---CCCCCCCCCCch------------h---hHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 272 ICSLPLLRRLDISVSSD---YPDYGNYSPNPN------------D---MLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 272 l~~L~~L~~LdLS~~~~---~~~~g~~~~~p~------------~---~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
+..+|+++.|.+|.|.. .-|+....++.. + ....+.+.+|++..+-+..|.+.+.
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccch
Confidence 66789999999998843 112211111110 1 1122456678888888888877543
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.54 E-value=7.7e-05 Score=83.71 Aligned_cols=129 Identities=29% Similarity=0.343 Sum_probs=91.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ ++ ++......++|+.|++++|.+. +++.......+|++|.++++... ..+..+.++
T Consensus 160 ~~l~~L~~L~l~~N~l-~~--l~~~~~~~~~L~~L~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~ 231 (394)
T COG4886 160 RNLPNLKNLDLSFNDL-SD--LPKLLSNLSNLNNLDLSGNKIS----DLPPEIELLSALEELDLSNNSII-ELLSSLSNL 231 (394)
T ss_pred hccccccccccCCchh-hh--hhhhhhhhhhhhheeccCCccc----cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc
Confidence 6788999999999988 43 3334447889999999999988 77765323256999999888532 345557778
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
+++..|.++.|+.. + + + .....+++|+.||+++|.+.. ++.+ ....
T Consensus 232 ~~l~~l~l~~n~~~-~---~---~-----~~~~~l~~l~~L~~s~n~i~~--------------------i~~~--~~~~ 277 (394)
T COG4886 232 KNLSGLELSNNKLE-D---L---P-----ESIGNLSNLETLDLSNNQISS--------------------ISSL--GSLT 277 (394)
T ss_pred ccccccccCCceee-e---c---c-----chhccccccceeccccccccc--------------------cccc--cccC
Confidence 88888888877761 1 0 1 136788899999999998752 2232 2556
Q ss_pred cceEeeccccC
Q psy17257 356 PLEFLGLYGTK 366 (778)
Q Consensus 356 ~L~~L~L~~t~ 366 (778)
.|++|.+.+..
T Consensus 278 ~l~~L~~s~n~ 288 (394)
T COG4886 278 NLRELDLSGNS 288 (394)
T ss_pred ccCEEeccCcc
Confidence 78888888766
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.54 E-value=5.2e-05 Score=61.02 Aligned_cols=59 Identities=29% Similarity=0.380 Sum_probs=50.8
Q ss_pred CCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 225 PHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 225 p~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
|+|+.|++++|.++ .++ .+..+ ++|++|++++|.+..-.+..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~----~i~~~~f~~l-~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT----EIPPDSFSNL-PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES----EECTTTTTTG-TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC----ccCHHHHcCC-CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 68999999999998 554 46778 8999999999999765566789999999999999863
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.50 E-value=0.00024 Score=84.39 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=71.3
Q ss_pred CCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHH
Q psy17257 226 HLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSY 305 (778)
Q Consensus 226 ~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~ 305 (778)
.++.|+|++|.+. +.. ...+.++ ++|+.|+|++|.+.+.++..++.+++|+.||+++|.+ + |.. |.
T Consensus 419 ~v~~L~L~~n~L~-g~i-p~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~l-s--g~i---P~----- 484 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFI-PNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-N--GSI---PE----- 484 (623)
T ss_pred EEEEEECCCCCcc-ccC-CHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCC-C--CCC---ch-----
Confidence 4788999999987 432 3458888 7999999999999988888899999999999999987 2 322 32
Q ss_pred HHhcCCCCCEEeecCCCCCC
Q psy17257 306 IIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 306 ~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+..+++|+.||+++|++.+
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred HHhcCCCCCEEECcCCcccc
Confidence 37889999999999999864
No 53
>KOG1644|consensus
Probab=97.26 E-value=0.00026 Score=69.76 Aligned_cols=87 Identities=25% Similarity=0.287 Sum_probs=43.9
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcch---hhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKD---NLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~---~~~~l 272 (778)
.+++.|.+|.+++|++ +.-+.. +...+|+|..|-+++|++. .-+++.++..| ++|++|.+.+|..... -...+
T Consensus 61 p~l~rL~tLll~nNrI-t~I~p~-L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~-p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRI-TRIDPD-LDTFLPNLKTLILTNNSIQ-ELGDLDPLASC-PKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCccccceEEecCCcc-eeeccc-hhhhccccceEEecCcchh-hhhhcchhccC-CccceeeecCCchhcccCceeEEE
Confidence 4555666666666665 332211 3334556666666665554 22244455555 4666666666555431 11234
Q ss_pred cCCCCccEEeccCC
Q psy17257 273 CSLPLLRRLDISVS 286 (778)
Q Consensus 273 ~~L~~L~~LdLS~~ 286 (778)
..+|+|+.||.+.-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 55555666555443
No 54
>KOG1859|consensus
Probab=97.23 E-value=3.7e-05 Score=87.67 Aligned_cols=106 Identities=24% Similarity=0.197 Sum_probs=80.0
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
..|.+.+.++|.++ .+...+.-+|.|++||||+|+++ +...|..| ++|++|+|++|.+..-.--....++ |
T Consensus 164 n~L~~a~fsyN~L~---~mD~SLqll~ale~LnLshNk~~----~v~~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV---LMDESLQLLPALESLNLSHNKFT----KVDNLRRL-PKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred hhHhhhhcchhhHH---hHHHHHHHHHHhhhhccchhhhh----hhHHHHhc-ccccccccccchhccccccchhhhh-h
Confidence 36777788888872 23445566899999999999999 78888888 7999999999987531111122344 9
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
..|.+++|.. +.|. .+.++.+|+.||+|+|-+.+.
T Consensus 235 ~~L~lrnN~l------------~tL~-gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 235 QLLNLRNNAL------------TTLR-GIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred eeeeecccHH------------Hhhh-hHHhhhhhhccchhHhhhhcc
Confidence 9999999987 2233 278899999999999987653
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=0.0014 Score=67.36 Aligned_cols=231 Identities=17% Similarity=0.117 Sum_probs=142.8
Q ss_pred CceeEEEeeCCc---cCHHHHHh-------h-ccCCccEEecCCCCCCCHhHHH---HHHhcCCCCceeecCCCCCCCcc
Q psy17257 86 THMKSVKLRNAE---VSDSGMQK-------L-LSHHVQELELIKCANVSQASLE---VLNMSSDQLYSLSLGPHCSMFPD 151 (778)
Q Consensus 86 ~~L~~L~L~~~~---isd~~l~~-------L-~~~~L~~LdLs~~~~lt~~~l~---~L~~~~~~L~~L~Ls~c~~~~~~ 151 (778)
.+|+.++++... ..|..... + .||+|+..+||.| -++...+. .+....++|.+|.|++|..- |.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~ 135 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PI 135 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCC-cc
Confidence 578888888643 33433332 2 3899999999998 46654443 33345679999999999764 21
Q ss_pred ccchhh-hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChh--HHHHHhccCCCCC
Q psy17257 152 CLESEV-VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQS--ICTQLYRDMPHLT 228 (778)
Q Consensus 152 ~~~~~~-~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~--~l~~~~~~lp~L~ 228 (778)
...... ++-+ + . ...-...-|.|++.....|++.++. -+...+.+-.+|.
T Consensus 136 aG~rigkal~~-------------l------------a--~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 136 AGGRIGKALFH-------------L------------A--YNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chhHHHHHHHH-------------H------------H--HHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 111100 0000 0 0 0012356788999999988873332 2343455556899
Q ss_pred eEeccCccccCCcccch-----HHHhccccccEEEcCCCCCcch----hhHhhcCCCCccEEeccCCCCCCCCCCCCCCc
Q psy17257 229 HLNLSKCMFLFDNKDLS-----FLAEFKDTLVSLVLFNVSIVKD----NLDHICSLPLLRRLDISVSSDYPDYGNYSPNP 299 (778)
Q Consensus 229 ~LdLS~~~i~~~~~~l~-----~L~~l~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p 299 (778)
.+.+..|.|. ..+ +. ++..+ .+|+.|++.+|-++-. ....++..+.|+.|.+.+|-. +..|+-
T Consensus 189 ~vki~qNgIr-peg-v~~L~~~gl~y~-~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll-s~~G~~---- 260 (388)
T COG5238 189 EVKIQQNGIR-PEG-VTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL-SNEGVK---- 260 (388)
T ss_pred eEEeeecCcC-cch-hHHHHHHHHHHh-CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh-ccccHH----
Confidence 9999998886 221 22 34456 6899999999988642 234577788899999998876 444532
Q ss_pred hhhHHHH-HhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 300 NDMLSYI-IFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 300 ~~~L~~~-~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
..+... -...|+|..|...+|...++.+.. ...+.+.+...|-|.+|.+.|+.+
T Consensus 261 -~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~-------------~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 261 -SVLRRFNEKFVPNLMPLPGDYNERRGGIILD-------------ISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred -HHHHHhhhhcCCCccccccchhhhcCceeee-------------echhhhhhcccHHHHHHHHccCcc
Confidence 333321 245788999999888876554422 223445544556677777776663
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.12 E-value=0.00057 Score=51.12 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=27.7
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHH
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFL 247 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L 247 (778)
++|++|++++|.+ ++ ++..+++|++|+.|++++|.++ +++++
T Consensus 1 ~~L~~L~l~~N~i-~~--l~~~l~~l~~L~~L~l~~N~i~----~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TD--LPPELSNLPNLETLNLSNNPIS----DISPL 42 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSCCS----BEGGG
T ss_pred CcceEEEccCCCC-cc--cCchHhCCCCCCEEEecCCCCC----CCcCC
Confidence 4677888888877 43 4434677888888888888777 56554
No 57
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.09 E-value=0.0076 Score=71.46 Aligned_cols=197 Identities=20% Similarity=0.246 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHH
Q psy17257 533 FVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMEL 612 (778)
Q Consensus 533 ~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~ 612 (778)
-+.|.|+.++-.++.....+. ...+.+++.-++..+++.. ...+-.+.++|.++.= .++|-....+.|.++-
T Consensus 264 qLlrv~~~lLlNLAed~~ve~--kM~~~~iV~~Lv~~Ldr~n-----~ellil~v~fLkkLSi-~~ENK~~m~~~giV~k 335 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVEL--KMVNKGIVSLLVKCLDREN-----EELLILAVTFLKKLSI-FKENKDEMAESGIVEK 335 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHH--HHHhcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHH
Confidence 355688888877776643332 3347888888888876431 2344556677888441 1334467789999999
Q ss_pred HHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccccc
Q psy17257 613 FLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRY 692 (778)
Q Consensus 613 ~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~ 692 (778)
+.+-+.. ++.+++...+++|.|++.-.++|++++...++..+..+|.+. +....|.+||.||..|.+ .= .-
T Consensus 336 L~kLl~s--~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~-~r--~~ 406 (708)
T PF05804_consen 336 LLKLLPS--ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLSMDDE-AR--SM 406 (708)
T ss_pred HHHHhcC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHh-hH--HH
Confidence 8888874 467799999999999999999999999999999999999873 344569999999977532 10 11
Q ss_pred ccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHH
Q psy17257 693 PAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQN 771 (778)
Q Consensus 693 ~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~ 771 (778)
....+.++. +..+|-.+..+.+++=++|++-|++.. .||+.++.+.||++.|=+
T Consensus 407 f~~TdcIp~-----------------------L~~~Ll~~~~~~v~~eliaL~iNLa~~--~rnaqlm~~g~gL~~L~~ 460 (708)
T PF05804_consen 407 FAYTDCIPQ-----------------------LMQMLLENSEEEVQLELIALLINLALN--KRNAQLMCEGNGLQSLMK 460 (708)
T ss_pred HhhcchHHH-----------------------HHHHHHhCCCccccHHHHHHHHHHhcC--HHHHHHHHhcCcHHHHHH
Confidence 122222232 234445556666777678888998884 599999999999876543
No 58
>KOG2739|consensus
Probab=97.03 E-value=0.00017 Score=73.79 Aligned_cols=67 Identities=34% Similarity=0.365 Sum_probs=32.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSI 264 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~ 264 (778)
..+|+|+.|.++.|..-...++.-++..+|+|++|++|+|.+. +-..+.++..+ .+|.+|.+.+|..
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~~l-~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLKEL-ENLKSLDLFNCSV 128 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhhhh-cchhhhhcccCCc
Confidence 3455666666665522011233334445566666666666655 11123344444 3555555555544
No 59
>KOG2739|consensus
Probab=96.85 E-value=0.00054 Score=70.22 Aligned_cols=108 Identities=27% Similarity=0.254 Sum_probs=75.8
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCc--cccCCcccchHHHhccccccEEEcCCCCCcc-hhhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKC--MFLFDNKDLSFLAEFKDTLVSLVLFNVSIVK-DNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~--~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l 272 (778)
-.+.+|+.|++.++.+++-. -+-.+|+|+.|++|.| .+. + .+..+....++|++|++++|++.. ..+..+
T Consensus 40 d~~~~le~ls~~n~gltt~~----~~P~Lp~LkkL~lsdn~~~~~-~--~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT----NFPKLPKLKKLELSDNYRRVS-G--GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred ccccchhhhhhhccceeecc----cCCCcchhhhhcccCCccccc-c--cceehhhhCCceeEEeecCCccccccccchh
Confidence 45567888888888773322 3336899999999999 444 2 344444333899999999999864 344557
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEee
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDL 318 (778)
..+++|..||+.+|.... . . ..=..++.-+|+|++||-
T Consensus 113 ~~l~nL~~Ldl~n~~~~~----l-~---dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN----L-D---DYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhcchhhhhcccCCccc----c-c---cHHHHHHHHhhhhccccc
Confidence 788899999999998721 1 1 122335778999999873
No 60
>KOG0166|consensus
Probab=96.84 E-value=0.04 Score=62.37 Aligned_cols=301 Identities=16% Similarity=0.218 Sum_probs=187.0
Q ss_pred hccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhcc--------CcCCc---cc
Q psy17257 436 HLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQ--------FKIPQ---DV 504 (778)
Q Consensus 436 h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~--------~~il~---~~ 504 (778)
+..+...|..+.+++..+...+............+|..+...+++.-+. .+|...-.+|.| -+..- -|
T Consensus 76 ~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~-~lq~eAAWaLTnIAsgtse~T~~vv~agav 154 (514)
T KOG0166|consen 76 YSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNP-TLQFEAAWALTNIASGTSEQTKVVVDAGAV 154 (514)
T ss_pred hCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCCh-hHHHHHHHHHHHHhcCchhhccccccCCch
Confidence 3344556889999999998887765555666778888999888744322 233332222222 11110 11
Q ss_pred cc-------cHHHHHHHHHHHHhhhcccCCCCCCchhHHHHH---HHHHHHhccCCHHHH----H----Hh-----hhh-
Q psy17257 505 QF-------DYDRLVRILLHIITEMEHESNSNGSNFVLRIAI---YLLNSLACQVDNAHK----I----LL-----GRL- 560 (778)
Q Consensus 505 ~f-------~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av---~il~~l~~~~s~~~~----~----~l-----~~~- 560 (778)
|. ....+++-+.-.+.+...| .+..|=-| .++..++..+....+ + .+ |+.
T Consensus 155 p~fi~Ll~s~~~~v~eQavWALgNIagd------s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 155 PIFIQLLSSPSADVREQAVWALGNIAGD------SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccccC------ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 11 2345555566566555555 22222212 222222222222111 0 11 111
Q ss_pred ----hhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhh
Q psy17257 561 ----GVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGN 636 (778)
Q Consensus 561 ----~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~n 636 (778)
.-++.+|..+..-+... -..++.=+..|+-.+||.+++.=...++.|.+..+++.|+.. +..+++-.|..+||
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGN 305 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccc
Confidence 23555555555554431 113333344455669999999999999999999999999976 56678889999999
Q ss_pred hhhhh-hhhhcccchhHHHHHHHhhcc-CCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCc
Q psy17257 637 VAEVK-SLRPKLMTSKFIEVFANLVSS-KSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE 714 (778)
Q Consensus 637 iaev~-~l~~~l~~~~~i~~~~~ll~~-~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~ 714 (778)
|+-=. +....+++...+++|..+|.. ..+. +.==||=+|++|+- | + ..+. +++++|
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~--ikkEAcW~iSNItA-G----~--~~qi----qaVida--------- 363 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKES--IKKEACWTISNITA-G----N--QEQI----QAVIDA--------- 363 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchh--HHHHHHHHHHHhhc-C----C--HHHH----HHHHHc---------
Confidence 87654 455677789999999999984 3222 33457778888865 4 1 1222 333333
Q ss_pred cceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhh
Q psy17257 715 RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774 (778)
Q Consensus 715 ~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~ 774 (778)
+ =+.++..+|.... ...|-=|+|||-|+|+.=..+-..+|++.|-++-|.++..
T Consensus 364 -~----l~p~Li~~l~~~e-f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~ 417 (514)
T KOG0166|consen 364 -N----LIPVLINLLQTAE-FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT 417 (514)
T ss_pred -c----cHHHHHHHHhccc-hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence 1 1357778887666 7899999999999999666777888999998888887764
No 61
>KOG0531|consensus
Probab=96.80 E-value=0.00044 Score=78.19 Aligned_cols=107 Identities=24% Similarity=0.268 Sum_probs=84.1
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++.+|.+ .. +......+++|++||+|+|.|+ ++.++..+ +.|+.|++.+|.+.. +..+..+
T Consensus 92 ~~~~~l~~l~l~~n~i-~~--i~~~l~~~~~L~~L~ls~N~I~----~i~~l~~l-~~L~~L~l~~N~i~~--~~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKI-EK--IENLLSSLVNLQVLDLSFNKIT----KLEGLSTL-TLLKELNLSGNLISD--ISGLESL 161 (414)
T ss_pred ccccceeeeeccccch-hh--cccchhhhhcchheeccccccc----cccchhhc-cchhhheeccCcchh--ccCCccc
Confidence 6778999999999988 32 3323667999999999999999 88899988 689999999999864 3334558
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHH-HhcCCCCCEEeecCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYI-IFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~-~~~lp~L~~LDLSgn~l~ 324 (778)
+.|+.+++++|.+ .. +... ...+.+|+.+++++|.+.
T Consensus 162 ~~L~~l~l~~n~i-~~-----------ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYNRI-VD-----------IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhcccCCcchh-hh-----------hhhhhhhhccchHHHhccCCchh
Confidence 9999999999987 21 1111 367888999999998865
No 62
>KOG4224|consensus
Probab=96.77 E-value=0.0083 Score=63.73 Aligned_cols=302 Identities=16% Similarity=0.251 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhh-hHHhhhccCcCC
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMR-NGCLTLCQFKIP 501 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~-n~~l~l~~~~il 501 (778)
...+++.+.+.+. .+..+|..++-.+-+|.-..+..+.-++.--.+|..|.+-|+.=.+..+.|- |.+-.|.++.
T Consensus 207 aG~lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-- 282 (550)
T KOG4224|consen 207 AGGLPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-- 282 (550)
T ss_pred cCCchhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--
Confidence 4456666666554 3467888888888887666554433222223467777777766555445542 2333333332
Q ss_pred ccccccHHHHHH----HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhcc--CCHH--HHHHhhhhhhHHHHHHHHHHH
Q psy17257 502 QDVQFDYDRLVR----ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQ--VDNA--HKILLGRLGVIKKMLRLIKDR 573 (778)
Q Consensus 502 ~~~~f~~~~~~~----~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~--~s~~--~~~~l~~~~~~~~ll~~i~~~ 573 (778)
...++-+-. ..++.+ +| .|.--|+...+|- ++-. -.-.+.+.||.+-++.+++..
T Consensus 283 ---~Yq~eiv~ag~lP~lv~Ll----qs----------~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~ 345 (550)
T KOG4224|consen 283 ---EYQREIVEAGSLPLLVELL----QS----------PMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAG 345 (550)
T ss_pred ---hhhhHHHhcCCchHHHHHH----hC----------cchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcC
Confidence 111111100 222222 23 2334455555554 3322 223445789999999999877
Q ss_pred HhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHH
Q psy17257 574 IEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFI 653 (778)
Q Consensus 574 ~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i 653 (778)
-.+.+ ---+-|+|||+.-.+..+-+.|.+.|+++.+.+-+.- .--++|..|-+-+.-.|--++-|..|.+...+
T Consensus 346 dnEei----qchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD--~pvsvqseisac~a~Lal~d~~k~~lld~gi~ 419 (550)
T KOG4224|consen 346 DNEEI----QCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD--GPVSVQSEISACIAQLALNDNDKEALLDSGII 419 (550)
T ss_pred Cchhh----hhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc--CChhHHHHHHHHHHHHHhccccHHHHhhcCCc
Confidence 55422 1236688999999899999999999999998777663 34568888887777777777777788888888
Q ss_pred HHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCC
Q psy17257 654 EVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYH 733 (778)
Q Consensus 654 ~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~ 733 (778)
.++..++.| ..+||+=|||..|+++.||- +.+ ..-|+-|+.|..-| ++| ..+.+ .+|
T Consensus 420 ~iLIp~t~s--~s~Ev~gNaAaAL~Nlss~v-~~Y--------------arviEawd~P~~gi---~g~--L~Rfl-~S~ 476 (550)
T KOG4224|consen 420 PILIPWTGS--ESEEVRGNAAAALINLSSDV-EHY--------------ARVIEAWDHPVQGI---QGR--LARFL-ASH 476 (550)
T ss_pred ceeecccCc--cchhhcccHHHHHHhhhhhh-HHH--------------HHHHHHhcCcchhH---HHH--HHHHH-hhh
Confidence 888888888 57999999999999998852 222 23466788887555 222 22333 377
Q ss_pred CchhhHHHHHHHHHhcccCCccccchhhhh-chHHHHHHHhh
Q psy17257 734 TPECQHWSVWALANLTKVYPEKYCQVVEAE-GGIELLQNLLD 774 (778)
Q Consensus 734 ~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e-~g~~~l~~~~~ 774 (778)
---+-|-|.|.|+|+......+.-.++... .=++++.++.+
T Consensus 477 ~~tf~hia~wTI~qLle~h~~~~~~~i~~~ddii~~~~~~~~ 518 (550)
T KOG4224|consen 477 ELTFRHIARWTIQQLLEDHDLPLTAFIQSSDDIIELLNDIVA 518 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCCccHHHHHhCchhHHHHHHHHHH
Confidence 778899999999999986655655554433 23455555543
No 63
>KOG1644|consensus
Probab=96.73 E-value=0.0014 Score=64.63 Aligned_cols=111 Identities=26% Similarity=0.364 Sum_probs=82.5
Q ss_pred CCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcc-hhhHhhcCC
Q psy17257 198 APKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVK-DNLDHICSL 275 (778)
Q Consensus 198 l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L 275 (778)
+.+...+++++|.+... ..+..+++|..|.+++|.++ .+.+ +...-++|++|.|.+|++-. ..+..+..|
T Consensus 41 ~d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt----~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRIT----RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccchhhc----ccCCCccccceEEecCCcce----eeccchhhhccccceEEecCcchhhhhhcchhccC
Confidence 45667889999887322 25668999999999999999 6643 66655789999999999754 345668899
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
|+|++|.+-+|+. +..-.| . ...+..+|+|+.||..+-...
T Consensus 113 p~L~~Ltll~Npv-~~k~~Y-R------~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 113 PKLEYLTLLGNPV-EHKKNY-R------LYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred CccceeeecCCch-hcccCc-e------eEEEEecCcceEeehhhhhHH
Confidence 9999999999987 221111 0 113678999999999876543
No 64
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.72 E-value=0.033 Score=66.22 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=165.5
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
..+.-.++.++..+.-- .+.+...++.|+++.+.+++...- ...++.++.+|.|++-. ++.+..+++.|.++
T Consensus 304 ~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-----~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIP 375 (708)
T PF05804_consen 304 EELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-----EDLVNVALRLLFNLSFD-PELRSQMVSLGLIP 375 (708)
T ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-----HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcH
Confidence 34554555666544432 567888888899999999997532 35678888999999965 77899999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIR 691 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~ 691 (778)
-+..-|. ++..+..++++|-|++--++-|..+-..+.+..+.++|-+. .+-+|.-.+...+-+++.+..-+=.++
T Consensus 376 kLv~LL~----d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~ 450 (708)
T PF05804_consen 376 KLVELLK----DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMC 450 (708)
T ss_pred HHHHHhC----CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHH
Confidence 9988886 45577789999999999999999898899999999886554 233444444455444444322111111
Q ss_pred ------------cccHHHHHHHHHHHhccCCCCCccc-eecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccc
Q psy17257 692 ------------YPAREKVLAKMVEAIERWPIDSERN-INYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQ 758 (778)
Q Consensus 692 ------------~~~r~~~~~~~~~~i~~w~~~~~~~-v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~ 758 (778)
-..|+.++=+|+..|..|+.+..++ +-|- .|+..++.....+....=++=.++|++.. ..+|-.
T Consensus 451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i--~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ 527 (708)
T PF05804_consen 451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFI--GDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQ 527 (708)
T ss_pred hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHH--HHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHH
Confidence 1145666667899999999765444 4666 67788888878888777788888888874 358888
Q ss_pred hhhhhchHHHHHHHhh
Q psy17257 759 VVEAEGGIELLQNLLD 774 (778)
Q Consensus 759 ~~~~e~g~~~l~~~~~ 774 (778)
.+.+-+=++.|.++..
T Consensus 528 ll~~~~llp~L~~~L~ 543 (708)
T PF05804_consen 528 LLQEYNLLPWLKDLLK 543 (708)
T ss_pred HHHhCCHHHHHHHHhC
Confidence 8888899999988874
No 65
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.71 E-value=0.039 Score=57.86 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=139.9
Q ss_pred HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Q psy17257 514 ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNV 593 (778)
Q Consensus 514 ~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~ 593 (778)
-++..+...+ | +++|++|...++..+.- +.....+.+.|.+.-+...+.... ..+=+-++.++-|+
T Consensus 16 ~Ll~lL~~t~-d------p~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL~~p~-----~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 16 KLLCLLESTE-D------PFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLLNDPN-----PSVREKALNALNNL 81 (254)
T ss_pred HHHHHHhcCC-C------hHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHcCCCC-----hHHHHHHHHHHHhc
Confidence 4555566555 8 99999999888886553 333444445555544444444432 11224577777776
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHH
Q psy17257 594 TDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNA 673 (778)
Q Consensus 594 tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a 673 (778)
....+ + +.-++. .+.-.++-...++-++++|..-|++|+|.+-..+-++ ++ .++|..|.+||.+. .-.+...|
T Consensus 82 s~~~e-n-~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~-~l-~~~i~~ll~LL~~G--~~~~k~~v 154 (254)
T PF04826_consen 82 SVNDE-N-QEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH-ML-ANYIPDLLSLLSSG--SEKTKVQV 154 (254)
T ss_pred CCChh-h-HHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh-hH-HhhHHHHHHHHHcC--ChHHHHHH
Confidence 54432 2 223333 2444445555677789999999999999985555544 34 44899999999984 56788999
Q ss_pred HHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc-cC
Q psy17257 674 AGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK-VY 752 (778)
Q Consensus 674 ~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~-~~ 752 (778)
-.+|.+|+++.. ..++|..| .....|..|+......++.+=|+|.++|+.. ..
T Consensus 155 Lk~L~nLS~np~------------~~~~Ll~~--------------q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 155 LKVLVNLSENPD------------MTRELLSA--------------QVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHHHHhccCHH------------HHHHHHhc--------------cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 999999977421 11222222 2346788999988899999999999999966 22
Q ss_pred Cccccc------------hhhhhc-hHHHHHHHhhccC
Q psy17257 753 PEKYCQ------------VVEAEG-GIELLQNLLDNEN 777 (778)
Q Consensus 753 ~~~y~~------------~~~~e~-g~~~l~~~~~~~~ 777 (778)
++.|.. ++.+++ =.+-|+.+..||+
T Consensus 209 ~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d 246 (254)
T PF04826_consen 209 KEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPD 246 (254)
T ss_pred cccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCC
Confidence 333443 233333 3566778888875
No 66
>KOG0532|consensus
Probab=96.71 E-value=0.00014 Score=81.27 Aligned_cols=105 Identities=27% Similarity=0.334 Sum_probs=69.0
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc-hHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL-SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l-~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
-|+.|-+++|++ +. ++.-++..+.|..||.|+|.+. .+ +.+..+ .+|+.|++..|++.+ +++.++.|+ |
T Consensus 144 pLkvli~sNNkl-~~--lp~~ig~~~tl~~ld~s~nei~----slpsql~~l-~slr~l~vrRn~l~~-lp~El~~Lp-L 213 (722)
T KOG0532|consen 144 PLKVLIVSNNKL-TS--LPEEIGLLPTLAHLDVSKNEIQ----SLPSQLGYL-TSLRDLNVRRNHLED-LPEELCSLP-L 213 (722)
T ss_pred cceeEEEecCcc-cc--CCcccccchhHHHhhhhhhhhh----hchHHhhhH-HHHHHHHHhhhhhhh-CCHHHhCCc-e
Confidence 477888888877 32 1222336777888888888776 44 346666 577777777777653 556666554 7
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
..||+|.|++ + ..| ..+..+..|+.|-|..|.+..-
T Consensus 214 i~lDfScNki-s------~iP-----v~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 214 IRLDFSCNKI-S------YLP-----VDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred eeeecccCce-e------ecc-----hhhhhhhhheeeeeccCCCCCC
Confidence 7888888876 1 112 1367788888888888877643
No 67
>KOG0531|consensus
Probab=96.67 E-value=0.00047 Score=78.01 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred ccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 278 LRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 278 L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
|+.+++++|+... .+ ..+..++++..||++.|.+.
T Consensus 234 L~~l~l~~n~i~~-------~~-----~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISR-------SP-----EGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCcccc-------cc-----ccccccccccccchhhcccc
Confidence 6666777666511 00 12566777888888877764
No 68
>KOG4308|consensus
Probab=96.67 E-value=0.00018 Score=81.95 Aligned_cols=194 Identities=22% Similarity=0.223 Sum_probs=128.1
Q ss_pred eeEEEeeCCccCHHHHHhhc-----cCCccEEecCCCCCCCHhHHHHHHhcC----CCCceeecCCCCCCCccccchhhh
Q psy17257 88 MKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKCANVSQASLEVLNMSS----DQLYSLSLGPHCSMFPDCLESEVV 158 (778)
Q Consensus 88 L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~~l~~L~~~~----~~L~~L~Ls~c~~~~~~~~~~~~~ 158 (778)
+..+.|.+|.+.+.+...+. .+.|+.|++++| .+++.+...+.+.. ..|+.|++..|.....+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~---- 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP---- 163 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH----
Confidence 77888888888888776554 578899999998 57777776665322 35677778777765322211
Q ss_pred hccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHH---HHhc----cCCCCCeEe
Q psy17257 159 VGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICT---QLYR----DMPHLTHLN 231 (778)
Q Consensus 159 l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~---~~~~----~lp~L~~Ld 231 (778)
+ .+-+.+.+.|+.++++.|.+ ...+.. ..+. ...+++.|+
T Consensus 164 l--------------------------------~~~L~~~~~l~~l~l~~n~l-~~~g~~~l~~~l~~~~~~~~~le~L~ 210 (478)
T KOG4308|consen 164 L--------------------------------AAVLEKNEHLTELDLSLNGL-IELGLLVLSQALESAASPLSSLETLK 210 (478)
T ss_pred H--------------------------------HHHHhcccchhHHHHHhccc-chhhhHHHhhhhhhhhcccccHHHHh
Confidence 0 11224578888999998887 333322 2222 356799999
Q ss_pred ccCccccCCcccchH----HHhccccccEEEcCCCCCcchhh----HhhcCC-CCccEEeccCCCCCCCCCCCCCCchhh
Q psy17257 232 LSKCMFLFDNKDLSF----LAEFKDTLVSLVLFNVSIVKDNL----DHICSL-PLLRRLDISVSSDYPDYGNYSPNPNDM 302 (778)
Q Consensus 232 LS~~~i~~~~~~l~~----L~~l~~~L~~L~L~~~~~~~~~~----~~l~~L-~~L~~LdLS~~~~~~~~g~~~~~p~~~ 302 (778)
+++|.++ .. +... +......+..|++.+|...+... +.+..+ ..++++|++.|.+ ++.|. ..
T Consensus 211 L~~~~~t-~~-~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi-~~~~~------~~ 281 (478)
T KOG4308|consen 211 LSRCGVT-SS-SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI-TEKGV------RD 281 (478)
T ss_pred hhhcCcC-hH-HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc-cccch------HH
Confidence 9999987 21 1111 33332226668888888765433 334445 6789999999998 33332 45
Q ss_pred HHHHHhcCCCCCEEeecCCCCCCCcc
Q psy17257 303 LSYIIFKLPHLVSLDISGTNLAGRGV 328 (778)
Q Consensus 303 L~~~~~~lp~L~~LDLSgn~l~~~~~ 328 (778)
+......+++++.|+++.|.+.+-++
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccHHH
Confidence 66668889999999999999875443
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.67 E-value=0.002 Score=48.16 Aligned_cols=35 Identities=34% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCc
Q psy17257 226 HLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 226 ~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~ 265 (778)
+|++|++++|.++ ++++ +.++ ++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~----~l~~~l~~l-~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT----DLPPELSNL-PNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S----SHGGHGTTC-TTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc----ccCchHhCC-CCCCEEEecCCCCC
Confidence 4555555555555 4444 4444 45555555554443
No 70
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.52 E-value=0.03 Score=60.77 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
.+++..|..+++.++++-+....... .+.+..+++.++.....
T Consensus 119 ~~i~~~a~~iLt~Ll~~~~~~~~~~~--~~~l~~ll~~L~~~l~~----------------------------------- 161 (312)
T PF03224_consen 119 SFIQLKAAFILTSLLSQGPKRSEKLV--KEALPKLLQWLSSQLSS----------------------------------- 161 (312)
T ss_dssp HHHHHHHHHHHHHHHTSTTT--HHHH--HHHHHHHHHHHH-TT-H-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHHHHHHhhcC-----------------------------------
Confidence 99999999999999998655443322 34445555555542211
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhh-----ccCCCCchhhHHHHHHHHHHhccCCC
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLV-----SSKSDGIEVSYNAAGVLSHIASDGPE 686 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll-----~~~~~~~evsy~a~gilahl~~~~~~ 686 (778)
++.+++.-++..|+++..+++.|....+.+.+..+.++| .+...++...|.+.-++=.|.++.
T Consensus 162 ----------~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-- 229 (312)
T PF03224_consen 162 ----------SDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEP-- 229 (312)
T ss_dssp ----------HHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSH--
T ss_pred ----------CCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCH--
Confidence 234455667777888888888898888888899999888 455678999999998887776642
Q ss_pred ccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchH
Q psy17257 687 AWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGI 766 (778)
Q Consensus 687 ~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~ 766 (778)
++.+.|.. .| =+.....+++...-.-+.-=|+.++.|++++.++.+++.++..|+.
T Consensus 230 ----------~~~~~~~~-------------~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l 285 (312)
T PF03224_consen 230 ----------EIAEELNK-------------KY-LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL 285 (312)
T ss_dssp ----------HHHHHHHT-------------TS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred ----------HHHHHHhc-------------cc-hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence 12222211 02 3455566777788888888899999999999888899999999999
Q ss_pred HHHHHHhhc
Q psy17257 767 ELLQNLLDN 775 (778)
Q Consensus 767 ~~l~~~~~~ 775 (778)
..|+.+...
T Consensus 286 ~~l~~L~~r 294 (312)
T PF03224_consen 286 KTLQNLSER 294 (312)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhcC
Confidence 999998764
No 71
>KOG4224|consensus
Probab=96.51 E-value=0.019 Score=61.12 Aligned_cols=231 Identities=23% Similarity=0.261 Sum_probs=160.0
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
.-+|+.+|.-+..+++--+.. ..+...|...-+..+-+.+. +.+-.-+..+|-|||.. .++-+..+..||+.
T Consensus 140 vevqcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskd-----irvqrnatgaLlnmThs-~EnRr~LV~aG~lp 211 (550)
T KOG4224|consen 140 VEVQCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKD-----IRVQRNATGALLNMTHS-RENRRVLVHAGGLP 211 (550)
T ss_pred cEEEeeehhhhhhhhccccch--hhhhhccchhhhHhhcccch-----hhHHHHHHHHHHHhhhh-hhhhhhhhccCCch
Confidence 347888898888888873333 33333333332333333332 22334566778998864 66789999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchh--HHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSK--FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWT 689 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~--~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~ 689 (778)
+++..+.. ++.+.|.-.---++|||--..-|..|...+ .++.+++|.++.+ -.|--.|+-.|-.|+||.+-.-.
T Consensus 212 vLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 212 VLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGS--DKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred hhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCC--hHHHHHHHHHHhhhcccchhhhH
Confidence 99999985 588999999999999997777899998766 9999999999954 45777888888888887542221
Q ss_pred cc----cc-----cHHHHHHHH---HHHhccCCCCC--ccceecc-cchhhHHhhccCCCchhhHHHHHHHHHhcccCCc
Q psy17257 690 IR----YP-----AREKVLAKM---VEAIERWPIDS--ERNINYR-SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE 754 (778)
Q Consensus 690 ~~----~~-----~r~~~~~~~---~~~i~~w~~~~--~~~v~yr-sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~ 754 (778)
+. -| .|......+ +..|+.-.... .--|+-- =.+|..+||.+-+..+.|.-||=.+.++..-+ +
T Consensus 288 iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-e 366 (550)
T KOG4224|consen 288 IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-E 366 (550)
T ss_pred HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-h
Confidence 11 11 112111222 23444433332 1123222 23799999999999999999999999999854 6
Q ss_pred cccchhhhhchHHHHHHHhhc
Q psy17257 755 KYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 755 ~y~~~~~~e~g~~~l~~~~~~ 775 (778)
|-.+-..+-|.++.|.++.-+
T Consensus 367 ~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 367 HNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred hhhHHHhhcCchHHHHHHHhc
Confidence 777888999999999988744
No 72
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.46 E-value=0.036 Score=50.16 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
..++.-|+..+..++.. +++....+-+.+.++.+++++... ...+.+.+..+|+|+++..|.....+++.|+++
T Consensus 21 ~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 21 ENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 56777777777776655 455555555668899999988763 245667788999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhh
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAE 639 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niae 639 (778)
.+++++..+ +.++.+.++.+|+|++|
T Consensus 95 ~l~~~l~~~--~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSS--NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhhC
Confidence 999999976 67899999999999875
No 73
>KOG3864|consensus
Probab=96.45 E-value=0.0028 Score=62.68 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=48.3
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
..++.++-+++.|...|++.+. .+.|+.|.+-+|..+.+-.+..++...++|+.|+|++|..++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4677777777777777877665 5677777778877777777777776667788888888877754
No 74
>KOG4658|consensus
Probab=96.04 E-value=0.0073 Score=73.98 Aligned_cols=109 Identities=28% Similarity=0.342 Sum_probs=72.2
Q ss_pred hcCCCccEEEecCCc--ccChhHHHHHhccCCCCCeEeccCccccCCcccc-hHHHhccccccEEEcCCCCCcchhhHhh
Q psy17257 196 LKAPKLRRFSLIGHT--LMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL-SFLAEFKDTLVSLVLFNVSIVKDNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~--l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l-~~L~~l~~~L~~L~L~~~~~~~~~~~~l 272 (778)
..+|+|++|-+.++. + .. .....+..+|.|+.||+|+|.-. + .+ ..++++ -+|+.|++++..+. .+|..+
T Consensus 542 ~~~~~L~tLll~~n~~~l-~~-is~~ff~~m~~LrVLDLs~~~~l-~--~LP~~I~~L-i~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWL-LE-ISGEFFRSLPLLRVLDLSGNSSL-S--KLPSSIGEL-VHLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred CCCCccceEEEeecchhh-hh-cCHHHHhhCcceEEEECCCCCcc-C--cCChHHhhh-hhhhcccccCCCcc-ccchHH
Confidence 456678888887774 3 11 12225677888888888876532 2 34 357777 68888888887765 577778
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
.++++|.+||+..+.... . .| .+...+++|++|.+-+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~----~--~~-----~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLE----S--IP-----GILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHhhheeccccccccc----c--cc-----chhhhcccccEEEeeccc
Confidence 888888888887766421 0 01 135568888888886665
No 75
>KOG1048|consensus
Probab=96.03 E-value=0.06 Score=62.99 Aligned_cols=236 Identities=27% Similarity=0.333 Sum_probs=158.9
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHH--HHHHHHhcCC
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAI--NCARFLNNGG 609 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~--~c~~f~~~~g 609 (778)
+++|..|-+-+ ...|.-+.+-+......|-|..++++++-+. +.+.+=+..+|-|+...+.. |=-..-+++|
T Consensus 247 ~~~qsnaaayl-QHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-----~evq~~acgaLRNLvf~~~~~~NKlai~~~~G 320 (717)
T KOG1048|consen 247 PSVQSNAAAYL-QHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-----DEVQRQACGALRNLVFGKSTDSNKLAIKELNG 320 (717)
T ss_pred hhhhHHHHHHH-HHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-----HHHHHHHHHHHHhhhcccCCcccchhhhhcCC
Confidence 77887765544 4555556666666667777888888777664 44556667788887776665 5456778999
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccC-------CC----CchhhHHHHHHHH
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSK-------SD----GIEVSYNAAGVLS 678 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~-------~~----~~evsy~a~gila 678 (778)
+...++.|++- .|.|+.+.|-|+|=|..+-+.+...+.++-.-.-+-+.+.-. .+ +-+|.|||+|+|-
T Consensus 321 v~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLR 399 (717)
T KOG1048|consen 321 VPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLR 399 (717)
T ss_pred hHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhc
Confidence 99999999976 488899999999999999988887777665544444444211 12 4579999999999
Q ss_pred HHhccCCCccccccccHH--HHHHHHH----HHhccCCCCC--c-------cceecccc---------------------
Q psy17257 679 HIASDGPEAWTIRYPARE--KVLAKMV----EAIERWPIDS--E-------RNINYRSF--------------------- 722 (778)
Q Consensus 679 hl~~~~~~~w~~~~~~r~--~~~~~~~----~~i~~w~~~~--~-------~~v~yrsf--------------------- 722 (778)
++.|.|.++=. .-|+ ...+.|+ .+|++-+.++ - |++.||.-
T Consensus 400 NlSs~~~eaR~---~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~ 476 (717)
T KOG1048|consen 400 NLSSAGQEARE---QMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVG 476 (717)
T ss_pred cccchhHHHHH---HHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCC
Confidence 99997754432 2222 2233333 4454544443 1 23456554
Q ss_pred ------------------------------hh--------------hHHhhccCCCchhhHHHHHHHHHhcccCCc--cc
Q psy17257 723 ------------------------------EP--------------IIQLLRVYHTPECQHWSVWALANLTKVYPE--KY 756 (778)
Q Consensus 723 ------------------------------~p--------------~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~--~y 756 (778)
.| -+.||..+..+..+==+.=||||+|--++. .|
T Consensus 477 ~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~ 556 (717)
T KOG1048|consen 477 PPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEY 556 (717)
T ss_pred CcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhH
Confidence 22 355666666666666677899999984432 44
Q ss_pred -cchh-hhhchHHHHHHHhhccC
Q psy17257 757 -CQVV-EAEGGIELLQNLLDNEN 777 (778)
Q Consensus 757 -~~~~-~~e~g~~~l~~~~~~~~ 777 (778)
|..+ .+|.|++.|-++...++
T Consensus 557 ~~~~v~~kekgl~~l~~ll~~~~ 579 (717)
T KOG1048|consen 557 MRGAVFRKEKGLPPLVELLRNDD 579 (717)
T ss_pred HHhhhhhhccCccHHHHHHhcCC
Confidence 3344 79999999988876553
No 76
>KOG4237|consensus
Probab=95.81 E-value=0.0049 Score=66.48 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=64.9
Q ss_pred hhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCC
Q psy17257 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPD 291 (778)
Q Consensus 214 ~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~ 291 (778)
......-++.+|+|+.|++|+|.++ .+. ++... ..++.|.|..|++....-..+.++..|+.|++.+|++ +.
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~----~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i-t~ 336 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKIT----RIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI-TT 336 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccc----hhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee-EE
Confidence 3344556777888888888888887 342 45566 6788888888876543334566788888888888887 21
Q ss_pred CCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 292 YGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 292 ~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
+ .|. .+..+..|..|++-+|.+.=+
T Consensus 337 ---~--~~~-----aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 337 ---V--APG-----AFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred ---E--ecc-----cccccceeeeeehccCcccCc
Confidence 1 111 245677788888888876543
No 77
>KOG4658|consensus
Probab=95.78 E-value=0.0085 Score=73.43 Aligned_cols=113 Identities=25% Similarity=0.239 Sum_probs=82.9
Q ss_pred hhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHh
Q psy17257 193 GYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDH 271 (778)
Q Consensus 193 ~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~ 271 (778)
+|+..+|.|+.|++++|.- ...++..++.+-+|++||++++.+. .++ ++.+++ .|.+|++..+......+..
T Consensus 565 ~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~----~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS----HLPSGLGNLK-KLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred HHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc----ccchHHHHHH-hhheeccccccccccccch
Confidence 4558899999999998764 3456778889999999999999998 664 699994 9999999988765555566
Q ss_pred hcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 272 ICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 272 l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
+..+++|++|.+-.... ..++ ..+.. +..+.+|+.|.+...
T Consensus 638 ~~~L~~Lr~L~l~~s~~-~~~~-------~~l~e-l~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSAL-SNDK-------LLLKE-LENLEHLENLSITIS 678 (889)
T ss_pred hhhcccccEEEeecccc-ccch-------hhHHh-hhcccchhhheeecc
Confidence 67799999999877653 1111 12222 455666666655443
No 78
>KOG4579|consensus
Probab=95.63 E-value=0.0035 Score=58.27 Aligned_cols=108 Identities=23% Similarity=0.226 Sum_probs=72.5
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
-+..++|++|.+..-.+....+.....|+..+||+|.+. +.+. +....+.++.|+|.+|.+++ ++.++..++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHh
Confidence 456678888877322233334555667777789988887 4432 33322578889998888764 66668888999
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.|+++.|++ . ..|+ .+..+.+|-.||.-+|.+.
T Consensus 103 r~lNl~~N~l-~------~~p~-----vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 103 RSLNLRFNPL-N------AEPR-----VIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhcccccCcc-c------cchH-----HHHHHHhHHHhcCCCCccc
Confidence 9999998887 1 1232 2334778888888887654
No 79
>KOG2122|consensus
Probab=95.46 E-value=0.15 Score=62.87 Aligned_cols=140 Identities=19% Similarity=0.301 Sum_probs=98.5
Q ss_pred HHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHh
Q psy17257 539 IYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQ 618 (778)
Q Consensus 539 v~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~ 618 (778)
-.|+-.|.=.-+...|+.|.+.|.|..|.+..-+- .-..+||-++|||||+.--+-+|=..|-...|.=-|+--+=
T Consensus 415 AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~----~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~L 490 (2195)
T KOG2122|consen 415 ASVLRNLSWRADSNMKKVLRETGSVTALAACALRN----KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTL 490 (2195)
T ss_pred HHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh----cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhc
Confidence 34444443333444667777777777666633222 12578999999999988877777667777777666666666
Q ss_pred hCCC---cHHHHHHHHhhhhhhhhh----hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccC
Q psy17257 619 YFPE---KDELLRNMMGLLGNVAEV----KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 619 ~f~~---~~~l~~~~lgll~niaev----~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~ 684 (778)
+|.. --.|.++.=|+|.||... ...|.-|-+..++..+...|.|. .+-|--||||.|.+|.-..
T Consensus 491 SY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~ 561 (2195)
T KOG2122|consen 491 SYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARS 561 (2195)
T ss_pred cccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhcCC
Confidence 6652 234667788999998765 33666666788899999999985 5788889999999996644
No 80
>KOG4199|consensus
Probab=95.28 E-value=2.3 Score=45.45 Aligned_cols=295 Identities=15% Similarity=0.226 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhccccccCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHH-----HHHH
Q psy17257 401 EMLQQVLNDLYHIFRYDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHII-----TTIL 475 (778)
Q Consensus 401 ~~~~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i-----~~LL 475 (778)
..+.++|+.+..+...+.+.--.+...+|+..+-.-..+..+-..|.+|+..-|.+... -|+.++ ..++
T Consensus 122 ~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~------nrQ~~m~~~il~Li~ 195 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEV------NRQLFMELKILELIL 195 (461)
T ss_pred hHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHH------HHHHHHHhhHHHHHH
Confidence 34666666666655422222124567888887777777777777888888777665432 233332 2344
Q ss_pred HHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHH
Q psy17257 476 NGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKI 555 (778)
Q Consensus 476 ~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~ 555 (778)
..+..+..+. +.|--+..+|=--.+.|...-+. +.. ...+
T Consensus 196 ~~l~~~gk~~-~VRel~~a~r~l~~dDDiRV~fg--------------------------------------~ah-~hAr 235 (461)
T KOG4199|consen 196 QVLNREGKTR-TVRELYDAIRALLTDDDIRVVFG--------------------------------------QAH-GHAR 235 (461)
T ss_pred HHHcccCccH-HHHHHHHHHHHhcCCCceeeecc--------------------------------------hhh-HHHH
Confidence 4555555443 33322222221111211111000 000 1122
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCC--cHHHHHHHHhh
Q psy17257 556 LLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE--KDELLRNMMGL 633 (778)
Q Consensus 556 ~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~--~~~l~~~~lgl 633 (778)
++.+.++...+.+.++-.++-++. .-+-.+++++- + .-+-|+...|.||++.+++|+....+ ..++.+.++.+
T Consensus 236 ~ia~e~~l~~L~Eal~A~~dp~~L-~~l~~tl~~lA-V---r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lsl 310 (461)
T KOG4199|consen 236 TIAKEGILTALTEALQAGIDPDSL-VSLSTTLKALA-V---RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSL 310 (461)
T ss_pred HHHHhhhHHHHHHHHHccCCccHH-HHHHHHHHHHH-H---HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 333444555556666665554221 11122444442 2 35689999999999999999996432 22355779999
Q ss_pred hhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC
Q psy17257 634 LGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS 713 (778)
Q Consensus 634 l~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~ 713 (778)
|.-+|.-+.-.+..+...-.+.+..++.-.++.=.|---++.|++-|.-+.|+.=.. .--...-+..+.|++..|.
T Consensus 311 LralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~--~ie~G~a~~avqAmkahP~-- 386 (461)
T KOG4199|consen 311 LRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAK--AIEAGAADLAVQAMKAHPV-- 386 (461)
T ss_pred HHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHH--HHhcchHHHHHHHHHhCcH--
Confidence 999999999888888888778787776444455667777888888887765432111 0001122333455555443
Q ss_pred ccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHH
Q psy17257 714 ERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQN 771 (778)
Q Consensus 714 ~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~ 771 (778)
..++|-=|-|+|.|+... ..-+|..++.-|--.++..
T Consensus 387 --------------------~a~vQrnac~~IRNiv~r-s~~~~~~~l~~GiE~Li~~ 423 (461)
T KOG4199|consen 387 --------------------AAQVQRNACNMIRNIVVR-SAENRTILLANGIEKLIRT 423 (461)
T ss_pred --------------------HHHHHHHHHHHHHHHHHh-hhhccchHHhccHHHHHHH
Confidence 458999999999999985 5678888888776666654
No 81
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.13 E-value=0.035 Score=40.61 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=37.2
Q ss_pred cHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhh
Q psy17257 597 TAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638 (778)
Q Consensus 597 ~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~nia 638 (778)
+|++++.+++.||++.+++.|+ ..++++++...+.|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999 568999999999999987
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.80 E-value=0.081 Score=58.83 Aligned_cols=21 Identities=14% Similarity=-0.032 Sum_probs=10.6
Q ss_pred cCCCceEEeCCCCH-HHHHHHH
Q psy17257 373 HDIPALRVAGDCNE-AQLLIAA 393 (778)
Q Consensus 373 ~~i~~l~v~g~~~~-~qil~al 393 (778)
+.-+|-.|-|.++. .++..++
T Consensus 235 ~~~~gd~~ygl~~~r~~~~~~~ 256 (426)
T PRK15386 235 HFRLGDIVYGLSSPREKVVNSI 256 (426)
T ss_pred ccccCCEEEeccchHHHHHHHH
Confidence 34455556666553 3344444
No 83
>KOG0532|consensus
Probab=94.67 E-value=0.0043 Score=69.75 Aligned_cols=129 Identities=22% Similarity=0.189 Sum_probs=80.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
.++..|+.|+++.|.+ +. ++.-+..|| |+.|-+|+|+++ .++ .++.. .+|..|+.+.|.+- .++..++.
T Consensus 118 ~~L~~lt~l~ls~Nql-S~--lp~~lC~lp-Lkvli~sNNkl~----~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQL-SH--LPDGLCDLP-LKVLIVSNNKLT----SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred hhhhHHHHhhhccchh-hc--CChhhhcCc-ceeEEEecCccc----cCCcccccc-hhHHHhhhhhhhhh-hchHHhhh
Confidence 5566777777777766 32 222233344 677777777776 343 34433 56777777776653 24555777
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVD 354 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~ 354 (778)
+.+|+.|.+..|+.. ..|. + .. .-.|..||+|.|++..-.+ .| +..
T Consensus 188 l~slr~l~vrRn~l~-------~lp~----E-l~-~LpLi~lDfScNkis~iPv-------------------~f--r~m 233 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE-------DLPE----E-LC-SLPLIRLDFSCNKISYLPV-------------------DF--RKM 233 (722)
T ss_pred HHHHHHHHHhhhhhh-------hCCH----H-Hh-CCceeeeecccCceeecch-------------------hh--hhh
Confidence 777777777777762 1232 1 23 3358999999998764322 13 467
Q ss_pred ccceEeeccccCCC
Q psy17257 355 RPLEFLGLYGTKHG 368 (778)
Q Consensus 355 ~~L~~L~L~~t~~~ 368 (778)
+.|++|-|-++++.
T Consensus 234 ~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQ 247 (722)
T ss_pred hhheeeeeccCCCC
Confidence 78888888888765
No 84
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.55 E-value=1.4 Score=51.22 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC-Ccc--ccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHH
Q psy17257 466 TKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI-PQD--VQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLL 542 (778)
Q Consensus 466 ~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i-l~~--~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il 542 (778)
...+....+..++ .||+ ..+++.++-.|.+-.- ... ..+.-..+...++.++... | ..+...|+.++
T Consensus 74 l~~~~~~~L~~gL-~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~--d------~~Va~~A~~~L 143 (503)
T PF10508_consen 74 LLPQYQPFLQRGL-THPS-PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP--D------LSVAKAAIKAL 143 (503)
T ss_pred HHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC--c------HHHHHHHHHHH
Confidence 3556666666666 4563 4555555554433110 000 0112223445677777644 4 77889999999
Q ss_pred HHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHH-HHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCC
Q psy17257 543 NSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEV-AWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFP 621 (778)
Q Consensus 543 ~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~-~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~ 621 (778)
..++.. +...+.+-+.+.+.++.+.+.+. +.+.++ .+.++.++-..+++.=..-.+.|-++.+++.|+.
T Consensus 144 ~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~------~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-- 213 (503)
T PF10508_consen 144 KKLASH--PEGLEQLFDSNLLSKLKSLMSQS------SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-- 213 (503)
T ss_pred HHHhCC--chhHHHHhCcchHHHHHHHHhcc------CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC--
Confidence 988875 33444443434455555555441 222333 4455777777777776666667777777777775
Q ss_pred CcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCC
Q psy17257 622 EKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKS 664 (778)
Q Consensus 622 ~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~ 664 (778)
+|.=+|.+++.++..+|+-++-...|++...++.+.+++....
T Consensus 214 dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 4454678999999999999888888999999999999997643
No 85
>KOG2123|consensus
Probab=94.51 E-value=0.0078 Score=62.19 Aligned_cols=81 Identities=25% Similarity=0.282 Sum_probs=53.4
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchh-----hH
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN-----LD 270 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~-----~~ 270 (778)
..+|.|+.|.||-|++ +. +. -+..|++|+.|.|..|.|. +-..+..+.++ ++|++|.|..|...+.. ..
T Consensus 38 ~kMp~lEVLsLSvNkI-ss--L~-pl~rCtrLkElYLRkN~I~-sldEL~YLknl-psLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKI-SS--LA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNL-PSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HhcccceeEEeecccc-cc--ch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcC-chhhhHhhccCCcccccchhHHHH
Confidence 5677888888888877 32 22 4456788888888888776 22134456677 68888888877765422 13
Q ss_pred hhcCCCCccEEe
Q psy17257 271 HICSLPLLRRLD 282 (778)
Q Consensus 271 ~l~~L~~L~~Ld 282 (778)
.+.-||+|+.||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 456677777776
No 86
>KOG3864|consensus
Probab=94.25 E-value=0.019 Score=56.96 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=43.2
Q ss_pred ccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCC-CcchhhHhhcCCCCcc
Q psy17257 201 LRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS-IVKDNLDHICSLPLLR 279 (778)
Q Consensus 201 L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~-~~~~~~~~l~~L~~L~ 279 (778)
++.++-+++.+ ..+++. .+..++.++.|.+.+|.-- ++..+..+.+..++|+.|.+++|. +|+..+..+..+++|+
T Consensus 103 IeaVDAsds~I-~~eGle-~L~~l~~i~~l~l~~ck~~-dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSI-MYEGLE-HLRDLRSIKSLSLANCKYF-DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchH-HHHHHH-HHhccchhhhheeccccch-hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 44555555555 455555 4555555555555555433 222344444444555555555554 3444555555555555
Q ss_pred EEeccCCC
Q psy17257 280 RLDISVSS 287 (778)
Q Consensus 280 ~LdLS~~~ 287 (778)
.|.+.+-+
T Consensus 180 ~L~l~~l~ 187 (221)
T KOG3864|consen 180 RLHLYDLP 187 (221)
T ss_pred HHHhcCch
Confidence 55554443
No 87
>KOG4308|consensus
Probab=94.01 E-value=0.0072 Score=69.11 Aligned_cols=195 Identities=22% Similarity=0.272 Sum_probs=122.4
Q ss_pred CceeEEEeeCCccCHHHHHhhc-----c-CCccEEecCCCCCCCHhHHH----HHHhcCCCCceeecCCCCCCCccccch
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-----S-HHVQELELIKCANVSQASLE----VLNMSSDQLYSLSLGPHCSMFPDCLES 155 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-----~-~~L~~LdLs~~~~lt~~~l~----~L~~~~~~L~~L~Ls~c~~~~~~~~~~ 155 (778)
..|..|+++++.+++.+...++ . ..++.|++..| .+++.+-. .+.. ...|+.++++.|.....+...
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~- 191 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLV- 191 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHH-
Confidence 6899999999999999887665 2 46788999998 57765543 3334 778999999999875111100
Q ss_pred hhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhH---HHHHhccCCC-CCeEe
Q psy17257 156 EVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSI---CTQLYRDMPH-LTHLN 231 (778)
Q Consensus 156 ~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~---l~~~~~~lp~-L~~Ld 231 (778)
+. . .+ ..-.....++++|++++|.+ +... +...+...+. +..||
T Consensus 192 ---l~---~---------~l----------------~~~~~~~~~le~L~L~~~~~-t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 192 ---LS---Q---------AL----------------ESAASPLSSLETLKLSRCGV-TSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred ---Hh---h---------hh----------------hhhhcccccHHHHhhhhcCc-ChHHHHHHHHHHhccchhhHHHH
Confidence 00 0 00 00013566888888888887 5433 3334555555 66688
Q ss_pred ccCccccCCcccch----HHHhccccccEEEcCCCCCcc----hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhH
Q psy17257 232 LSKCMFLFDNKDLS----FLAEFKDTLVSLVLFNVSIVK----DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDML 303 (778)
Q Consensus 232 LS~~~i~~~~~~l~----~L~~l~~~L~~L~L~~~~~~~----~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L 303 (778)
+++|.+. |.+ +. .+...+.+++++.++.|++++ .....+..++.++.|+++.|.. .+.+. ..+
T Consensus 240 l~~n~l~-d~g-~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l-~~~~~------~~~ 310 (478)
T KOG4308|consen 240 LASNKLG-DVG-VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL-TDYGV------ELL 310 (478)
T ss_pred HHhcCcc-hHH-HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc-ccHHH------HHH
Confidence 8888886 321 22 233343567888888888875 3445567788888899988887 22211 122
Q ss_pred HHHHhcCCCCCEEeecCCCCC
Q psy17257 304 SYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 304 ~~~~~~lp~L~~LDLSgn~l~ 324 (778)
.........+.++-+.++...
T Consensus 311 ~~~l~~~~~~~~~~l~~~~~~ 331 (478)
T KOG4308|consen 311 LEALERKTPLLHLVLGGTGKG 331 (478)
T ss_pred HHHhhhcccchhhhccccCcc
Confidence 222444555666666655543
No 88
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=93.82 E-value=0.11 Score=37.42 Aligned_cols=39 Identities=18% Similarity=0.372 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhh
Q psy17257 598 AINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638 (778)
Q Consensus 598 p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~nia 638 (778)
+++++.+++.||++.+++.+. .+++++++...+.|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 447889999999999999999 568999999999999997
No 89
>KOG4199|consensus
Probab=93.73 E-value=6.5 Score=42.20 Aligned_cols=197 Identities=17% Similarity=0.283 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCC-CC-----ChHH--HHHHHHHHHHHHhcCCCchhhhhhHHhhh
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRP-VL-----SSLT--KRHIITTILNGMHMHLEDDTMMRNGCLTL 495 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~-~~-----~~~~--~~~~i~~LL~am~~~~~~~~l~~n~~l~l 495 (778)
.+++++..++.+|.....|. +.++.+--|+..+..+ -+ ..+. ...+...|..+...|.+...|- .-+.||
T Consensus 189 ~il~Li~~~l~~~gk~~~VR-el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~-~l~~tl 266 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVR-ELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV-SLSTTL 266 (461)
T ss_pred hHHHHHHHHHcccCccHHHH-HHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH-HHHHHH
Confidence 35566666666665553333 4444444444444332 11 0111 1123556666776666533222 222333
Q ss_pred ccCcCCccccccHHHHHH---------HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHH
Q psy17257 496 CQFKIPQDVQFDYDRLVR---------ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKM 566 (778)
Q Consensus 496 ~~~~il~~~~f~~~~~~~---------~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~l 566 (778)
.-- --++.+|+ .+++++...+ | -+....-+-+.++++.+|-+ -+-|..+-+.|-...+
T Consensus 267 ~~l-------AVr~E~C~~I~e~GGl~tl~~~i~d~n-~---~~~r~l~k~~lslLralAG~--DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 267 KAL-------AVRDEICKSIAESGGLDTLLRCIDDSN-E---QGNRTLAKTCLSLLRALAGS--DSVKSTIVEKGGLDKI 333 (461)
T ss_pred HHH-------HHHHHHHHHHHHccCHHHHHHHHhhhc-h---hhHHHHHHHHHHHHHHHhCC--CchHHHHHHhcChHHH
Confidence 111 12344554 5666776533 2 11122334555666666654 4456666666677777
Q ss_pred HHHHHHHHhh-hccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhh
Q psy17257 567 LRLIKDRIEK-QRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAE 639 (778)
Q Consensus 567 l~~i~~~~~~-~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niae 639 (778)
.+++.+..+. .+|..+|-. +-=++-.+|+....|+|.||-++.+++++.||...-+|++.--++.||+-
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~----i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAI----ISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHcCCChHHHHHHHHH----HHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 7877777766 455555533 23345567999999999999999999999999999999999999999874
No 90
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.59 E-value=0.16 Score=56.51 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=46.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCC-CCCeEeccCcc-ccCCcccchHHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMP-HLTHLNLSKCM-FLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp-~L~~LdLS~~~-i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++++.|++++|.+ +. ++ .+| +|++|++++|. ++ .++... .++|+.|.+++|.....++
T Consensus 49 ~~~~~l~~L~Is~c~L-~s--LP----~LP~sLtsL~Lsnc~nLt----sLP~~L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 49 EEARASGRLYIKDCDI-ES--LP----VLPNELTEITIENCNNLT----TLPGSI--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHhcCCCEEEeCCCCC-cc--cC----CCCCCCcEEEccCCCCcc----cCCchh--hhhhhheEccCcccccccc----
Confidence 4578889999998876 32 22 344 58899988754 33 343321 2578888888874332222
Q ss_pred CCCCccEEeccCCCC
Q psy17257 274 SLPLLRRLDISVSSD 288 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~ 288 (778)
..|++|+++.+..
T Consensus 112 --~sLe~L~L~~n~~ 124 (426)
T PRK15386 112 --ESVRSLEIKGSAT 124 (426)
T ss_pred --cccceEEeCCCCC
Confidence 3577788765543
No 91
>KOG2160|consensus
Probab=93.43 E-value=11 Score=40.85 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=108.8
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
..++.-|..+++.++..-...|. ++-+.++.+.++.++. +.. ++.+-.-++.|+-++.=..|..=..|+.-+|..
T Consensus 138 ~~lR~~Aa~Vigt~~qNNP~~Qe-~v~E~~~L~~Ll~~ls-~~~---~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~ 212 (342)
T KOG2160|consen 138 AELRELAARVIGTAVQNNPKSQE-QVIELGALSKLLKILS-SDD---PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ 212 (342)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHH-HHHHcccHHHHHHHHc-cCC---CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH
Confidence 88999999999999988544454 4444558888888887 221 233334456666664445666779999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIR 691 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~ 691 (778)
.+..||+.=..+.-+++|++-|+..+.+-+.--...+...-+.....-+.++ ..-++--+|-+.+-++++.-..-=+..
T Consensus 213 ~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~-l~~~~~e~~l~~~l~~l~~~~~~~~~~ 291 (342)
T KOG2160|consen 213 VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISS-LDFEVNEAALTALLSLLSELSTRKELF 291 (342)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhc-cchhhhHHHHHHHHHHHHHHhhcchhh
Confidence 9999999866788899999999999987644333333333222222222232 344666677666666666422111121
Q ss_pred --cccHHHHHHHHHHHhc
Q psy17257 692 --YPAREKVLAKMVEAIE 707 (778)
Q Consensus 692 --~~~r~~~~~~~~~~i~ 707 (778)
....+++++.++..++
T Consensus 292 ~~~~~l~e~l~~~~q~~~ 309 (342)
T KOG2160|consen 292 VSLLNLEELLKSLIQIIS 309 (342)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 2245566666666555
No 92
>KOG4579|consensus
Probab=93.39 E-value=0.025 Score=52.81 Aligned_cols=85 Identities=25% Similarity=0.215 Sum_probs=68.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
.....|+..+|++|.+ .+ ..+.+...+|.++.|++++|.++ +++ .+..+ +.|++|+++.|.+.. .+..+..
T Consensus 50 ~~~~el~~i~ls~N~f-k~-fp~kft~kf~t~t~lNl~~neis----dvPeE~Aam-~aLr~lNl~~N~l~~-~p~vi~~ 121 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGF-KK-FPKKFTIKFPTATTLNLANNEIS----DVPEELAAM-PALRSLNLRFNPLNA-EPRVIAP 121 (177)
T ss_pred hCCceEEEEecccchh-hh-CCHHHhhccchhhhhhcchhhhh----hchHHHhhh-HHhhhcccccCcccc-chHHHHH
Confidence 5566888899999988 43 33446667889999999999998 665 48888 899999999999864 4666777
Q ss_pred CCCccEEeccCCCC
Q psy17257 275 LPLLRRLDISVSSD 288 (778)
Q Consensus 275 L~~L~~LdLS~~~~ 288 (778)
|.+|-.||.-+|..
T Consensus 122 L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 122 LIKLDMLDSPENAR 135 (177)
T ss_pred HHhHHHhcCCCCcc
Confidence 88999999877765
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.03 E-value=0.17 Score=32.97 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=17.9
Q ss_pred cCCccEEecCCCCCCCHhHHHHHH
Q psy17257 108 SHHVQELELIKCANVSQASLEVLN 131 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~ 131 (778)
+++|++|+|++|.++|+.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 357788888888778887777665
No 94
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=90.76 E-value=18 Score=39.00 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=103.8
Q ss_pred cccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhh-cccchhHHHHHHHhhccCCCCchhhH
Q psy17257 593 VTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRP-KLMTSKFIEVFANLVSSKSDGIEVSY 671 (778)
Q Consensus 593 ~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~-~l~~~~~i~~~~~ll~~~~~~~evsy 671 (778)
+.|-..+.-...++.|.+.-+++.|.. .+..+|+-.|+-.|||--=...+. -+++--++..|..+|.+..+ .+.-
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~--~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke--~irK 345 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSH--ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE--NIRK 345 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcC--ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh--hhhh
Confidence 667767766788999999999998875 356688999999999976655554 45677889999999999754 4444
Q ss_pred HHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc-
Q psy17257 672 NAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK- 750 (778)
Q Consensus 672 ~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~- 750 (778)
-||=.|++|.- | + .+-.+.+++| ++. -|...||. +-..-.+-=|-||+-|.++
T Consensus 346 EaCWTiSNITA-G----n------teqiqavid~----------nli----PpLi~lls-~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 346 EACWTISNITA-G----N------TEQIQAVIDA----------NLI----PPLIHLLS-SAEYKIKKEACWAISNATSG 399 (526)
T ss_pred hhheeeccccc-C----C------HHHHHHHHhc----------ccc----hHHHHHHH-HHHHHHHHHHHHHHHhhhcc
Confidence 44444444422 1 1 1112333222 111 46666665 3345567789999999998
Q ss_pred --cCCccccchhhhhchHHHHHHHhh
Q psy17257 751 --VYPEKYCQVVEAEGGIELLQNLLD 774 (778)
Q Consensus 751 --~~~~~y~~~~~~e~g~~~l~~~~~ 774 (778)
..|+- .++|++.|-..-|+++.+
T Consensus 400 g~~~PD~-iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 400 GLNRPDI-IRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred ccCCchH-HHHHHHccchhHHHHHHh
Confidence 45553 788999999999988765
No 95
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.53 E-value=15 Score=42.74 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC
Q psy17257 423 EHALVVVLEALDTHLT--ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI 500 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~--~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i 500 (778)
++.+-+++.++++... +..++..|..++-++. ++...+.++..+.+.+. +++. .+.|+..+++.+..-
T Consensus 74 ~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------~~~~~~~l~~~v~~ll~-~~~~-~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 74 PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--------TPEMAEPLIPDVIKLLS-DPSP-YVRKKAALALLKIYR 143 (526)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHH-SSSH-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--------ccchhhHHHHHHHHHhc-CCch-HHHHHHHHHHHHHhc
Confidence 5566777777877544 3347778888888875 34455666666666653 5533 677777776665522
Q ss_pred --CccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHH
Q psy17257 501 --PQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSL 545 (778)
Q Consensus 501 --l~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l 545 (778)
|+.++-. +...+...+. +.| +.++.-|+.++..+
T Consensus 144 ~~p~~~~~~---~~~~l~~lL~--d~~------~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 144 KDPDLVEDE---LIPKLKQLLS--DKD------PSVVSAALSLLSEI 179 (526)
T ss_dssp HCHCCHHGG---HHHHHHHHTT--HSS------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHH---HHHHHhhhcc--CCc------chhHHHHHHHHHHH
Confidence 2222211 2333333332 224 67777777777766
No 96
>KOG1410|consensus
Probab=89.26 E-value=30 Score=40.61 Aligned_cols=236 Identities=21% Similarity=0.222 Sum_probs=122.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhc-CCCchh-hhhh---HHhhhccCcCCcc--ccccHHHH
Q psy17257 439 ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHM-HLEDDT-MMRN---GCLTLCQFKIPQD--VQFDYDRL 511 (778)
Q Consensus 439 ~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~-~~~~~~-l~~n---~~l~l~~~~il~~--~~f~~~~~ 511 (778)
...-|+-|+.||..++...- .+|..+|-++-+.+|+.+.+ -|.-.. ++.. .+-.|..+.-..+ ..+-+..+
T Consensus 52 ~pYs~mlAst~L~Klvs~~t--~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~ 129 (1082)
T KOG1410|consen 52 YPYSQMLASTCLMKLVSRKT--PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDP 129 (1082)
T ss_pred CchHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhh
Confidence 34568899999999987653 57899999999999998876 553222 1110 0111111111111 12334444
Q ss_pred HHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCH--------HHHHHh-h-hhhhHHHHH----HHHHHHHhhh
Q psy17257 512 VRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDN--------AHKILL-G-RLGVIKKML----RLIKDRIEKQ 577 (778)
Q Consensus 512 ~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~--------~~~~~l-~-~~~~~~~ll----~~i~~~~~~~ 577 (778)
.+-+-+.+...+.| .. -++|.|++.++..|+. ...... . ......++. ..+++-.+.+
T Consensus 130 v~~~~kfl~~~~ve------~~--~igv~iLsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~n 201 (1082)
T KOG1410|consen 130 VDDVTKFLQMDNVE------HC--IIGVQILSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLN 201 (1082)
T ss_pred HHHHHHHhccCchH------HH--HHHHHHHHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccC
Confidence 55555555543323 33 4889999999988832 111111 1 111122222 2222222111
Q ss_pred ccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhh-CCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH
Q psy17257 578 RCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY-FPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVF 656 (778)
Q Consensus 578 ~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~-f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~ 656 (778)
+-|+ |..=+.+..+.+-++|+.- |-+.+ ...--.=+++|-.=..-|..+.+..-+..|
T Consensus 202 ---------------lnd~----~q~~L~~~vL~L~l~Cl~FDfiGss--~DEssed~ctVQIPTsWRs~f~d~stlqlf 260 (1082)
T KOG1410|consen 202 ---------------LNDR----AQLGLLMQVLKLNLNCLNFDFIGSS--TDESSEDLCTVQIPTSWRSSFLDSSTLQLF 260 (1082)
T ss_pred ---------------cccH----hHhhHHHHHHHHHhhhccccccccc--cccccccccceecCcHHHHHhcCchHHHHH
Confidence 1122 2222333333444444421 11000 000000124444445567778888888888
Q ss_pred HHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccC
Q psy17257 657 ANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERW 709 (778)
Q Consensus 657 ~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w 709 (778)
.++.+|- .-+.|--|-.+|+.+||-...-. ..+.|...++.+++-+.+-
T Consensus 261 Fdly~sl--p~~~S~~alsclvqlASvRRsLF--N~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 261 FDLYHSL--PPELSELALSCLVQLASVRRSLF--NGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred HHHhccC--CchhhHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence 8888884 45777888888888888543222 3567888888877655543
No 97
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.55 E-value=26 Score=37.89 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhh-hccc-hhHHHHHHHHHhcccccHHHHHHHHhcCC
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEK-QRCD-DILEVAWSAMWNVTDETAINCARFLNNGG 609 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~-~~~d-~~l~~~~s~lwn~tde~p~~c~~f~~~~g 609 (778)
...+.+|+..+..++.. ++-...+-+.+.+..+..+++..... +... ..+=-++-++|-+|=+ |+.++.+...+-
T Consensus 164 ~~~~~~av~~L~~LL~~--~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~ 240 (312)
T PF03224_consen 164 SELQYIAVQCLQNLLRS--KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYL 240 (312)
T ss_dssp H---HHHHHHHHHHHTS--HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSH
T ss_pred cchHHHHHHHHHHHhCc--chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccch
Confidence 44667888888888733 55555555688888888888422221 1111 2222255668888754 667799999999
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS 642 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~ 642 (778)
+..+.++++.-+ +..+.|-+++.+.|+.+...
T Consensus 241 i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 241 IPLLADILKDSI-KEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHH---SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHhcc-cchHHHHHHHHHHHHHhccH
Confidence 999999999987 66799999999999987755
No 98
>KOG1222|consensus
Probab=88.51 E-value=4.6 Score=45.12 Aligned_cols=154 Identities=24% Similarity=0.343 Sum_probs=107.1
Q ss_pred cccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHH
Q psy17257 505 QFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILE 584 (778)
Q Consensus 505 ~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~ 584 (778)
.-+|+|..+-+-..+.+.+ -..|.|+.++-.+|..++.|.+--- ..+|.-+++.++.. ..+ .+-
T Consensus 259 k~e~dr~~kklk~~~~KQe---------qLLrva~ylLlNlAed~~~ElKMrr--kniV~mLVKaLdr~----n~~-Ll~ 322 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQE---------QLLRVAVYLLLNLAEDISVELKMRR--KNIVAMLVKALDRS----NSS-LLT 322 (791)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhhhHHHHHHH--HhHHHHHHHHHccc----chH-HHH
Confidence 5578888887666666653 3568999999999988877755332 23455555544332 212 112
Q ss_pred HHHHHH--HhcccccHHHHHHHHhcCChHHHHHHHhhCCC-cHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhc
Q psy17257 585 VAWSAM--WNVTDETAINCARFLNNGGMELFLNCLQYFPE-KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS 661 (778)
Q Consensus 585 ~~~s~l--wn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~-~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~ 661 (778)
.+.++| -.|.||... +.+.+.+.-+-++-||. ++++....+.|+=|.+.=..+|++.+.--++.+...+|.
T Consensus 323 lv~~FLkKLSIf~eNK~------~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~ 396 (791)
T KOG1222|consen 323 LVIKFLKKLSIFDENKI------VMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD 396 (791)
T ss_pred HHHHHHHHhhhhccchH------HHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC
Confidence 222233 347787664 66667778888888884 577888899999999999999999999999999999998
Q ss_pred cCCCCchhhHHHHHHHHHHhccC
Q psy17257 662 SKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 662 ~~~~~~evsy~a~gilahl~~~~ 684 (778)
+.. ..=.|-.++-|+..|.
T Consensus 397 ~d~----~~~iA~~~lYh~S~dD 415 (791)
T KOG1222|consen 397 SDT----KHGIALNMLYHLSCDD 415 (791)
T ss_pred Ccc----cchhhhhhhhhhccCc
Confidence 842 1224667788886653
No 99
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=88.44 E-value=2.7 Score=44.92 Aligned_cols=182 Identities=25% Similarity=0.383 Sum_probs=121.4
Q ss_pred hhhhHHHHHHHHHHHHhhhccchhHHH--HHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhh
Q psy17257 559 RLGVIKKMLRLIKDRIEKQRCDDILEV--AWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGN 636 (778)
Q Consensus 559 ~~~~~~~ll~~i~~~~~~~~~d~~l~~--~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~n 636 (778)
+.|.|..+++.++.. -...++| +| ++-|+.--+...-+.-++.|++.+|++-|-. .+.++.....=.|||
T Consensus 112 daGvVpRfvefm~~~-----q~~mlqfEAaW-alTNiaSGtt~QTkvVvd~~AVPlfiqlL~s--~~~~V~eQavWALGN 183 (526)
T COG5064 112 DAGVVPRFVEFMDEI-----QRDMLQFEAAW-ALTNIASGTTQQTKVVVDAGAVPLFIQLLSS--TEDDVREQAVWALGN 183 (526)
T ss_pred hccccHHHHHHHHhc-----chhHHHHHHHH-HHhhhccCcccceEEEEeCCchHHHHHHHcC--chHHHHHHHHHHhcc
Confidence 445666666666522 1344555 33 2344433444444577899999999999974 578888889999999
Q ss_pred hhhhhh-hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc--cCCCccccccccHHHHHHHHHHHhccCCCCC
Q psy17257 637 VAEVKS-LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS--DGPEAWTIRYPAREKVLAKMVEAIERWPIDS 713 (778)
Q Consensus 637 iaev~~-l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~--~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~ 713 (778)
||.=.+ .|.....-..++-+..+|.|++.+|-.--||.=.|++|.- ..|..|.. +-+
T Consensus 184 iAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~-------isq------------- 243 (526)
T COG5064 184 IAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSN-------ISQ------------- 243 (526)
T ss_pred ccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHH-------HHH-------------
Confidence 998755 6776667777888889999876666666677777777743 11223321 111
Q ss_pred ccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 714 ERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 714 ~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
+ -|++.=|-.+.-|++-.=|.|||--+.-. |.--..-+++-|-..-|-++..||+
T Consensus 244 -------a-lpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 244 -------A-LPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred -------H-HHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 1 24444444467889999999999887665 6666677777777766777777764
No 100
>KOG1241|consensus
Probab=87.65 E-value=21 Score=42.42 Aligned_cols=283 Identities=13% Similarity=0.186 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCc--C
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFK--I 500 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~--i 500 (778)
.+++..++..|. .....+..++.=++..++..--....+....+.++..++.++..+|. +--|||.++-++. +
T Consensus 405 ~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePr---va~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 405 IQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPR---VASNVCWAFISLAEAA 479 (859)
T ss_pred hhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCch---HHHHHHHHHHHHHHHH
Confidence 667777777777 22334445666688888887665566888999999999999999984 4467777666553 3
Q ss_pred -------Ccccccc--HHHHHHHHHHHHhhhc-ccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhh--hhHHHHHH
Q psy17257 501 -------PQDVQFD--YDRLVRILLHIITEME-HESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRL--GVIKKMLR 568 (778)
Q Consensus 501 -------l~~~~f~--~~~~~~~~l~~~~~~~-~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~--~~~~~ll~ 568 (778)
.|+.+-+ |+.+..-+++.-...+ ++ .+.+.-|+.-+..++..-+.+--..+.+. -+++++=+
T Consensus 480 ~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnq------sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q 553 (859)
T KOG1241|consen 480 YEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQ------SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQ 553 (859)
T ss_pred HHhccCCCCCCccchhHHHHHHHHHhhccccccch------hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 2333444 4455544444443322 22 55777778888888877444433333322 22343333
Q ss_pred HHH-HHH---hhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhh
Q psy17257 569 LIK-DRI---EKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLR 644 (778)
Q Consensus 569 ~i~-~~~---~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~ 644 (778)
.+. +.+ ++...+..-.....+|-+++-..+. =.+-+-..-|.+|++.+++ +....+++.+++-.+-.+|.-.-+
T Consensus 554 ~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~ 631 (859)
T KOG1241|consen 554 TISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKG 631 (859)
T ss_pred HHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHh
Confidence 333 111 1111112222222333333333332 1233456679999999999 667778899999999999886655
Q ss_pred hcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc-ccccHHHHHHHHHHHhccCCCCCccceecccch
Q psy17257 645 PKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI-RYPAREKVLAKMVEAIERWPIDSERNINYRSFE 723 (778)
Q Consensus 645 ~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~-~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~ 723 (778)
. ..|+..|..+|...-. =..-|++|.+---++-|=..+-.. .-|--++++..|+..+.+ ...-|+-+
T Consensus 632 F----~kym~~f~pyL~~gL~-n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss-------~~~hR~vK 699 (859)
T KOG1241|consen 632 F----AKYMPAFKPYLLMGLS-NFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSS-------PNLHRNVK 699 (859)
T ss_pred H----HHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccC-------cccccccc
Confidence 4 5678888777754210 023355544333333221111111 123346788888777765 34457777
Q ss_pred hhHHhhccC
Q psy17257 724 PIIQLLRVY 732 (778)
Q Consensus 724 p~~~ll~~~ 732 (778)
|. +|.+|
T Consensus 700 P~--IlS~F 706 (859)
T KOG1241|consen 700 PA--ILSVF 706 (859)
T ss_pred ch--HHHHH
Confidence 74 34444
No 101
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.45 E-value=18 Score=42.12 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHH
Q psy17257 511 LVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAM 590 (778)
Q Consensus 511 ~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~l 590 (778)
.-..+...+.+. + +.+++.+...+..++.. +......+.+.+++..++..+...- ..+-+.+..+|
T Consensus 78 ~~~~L~~gL~h~--~------~~Vr~l~l~~l~~~~~~-~~~~~~~~~~~~l~~~i~~~L~~~d-----~~Va~~A~~~L 143 (503)
T PF10508_consen 78 YQPFLQRGLTHP--S------PKVRRLALKQLGRIARH-SEGAAQLLVDNELLPLIIQCLRDPD-----LSVAKAAIKAL 143 (503)
T ss_pred HHHHHHHHhcCC--C------HHHHHHHHHHHHHHhcC-CHHHHHHhcCccHHHHHHHHHcCCc-----HHHHHHHHHHH
Confidence 334566666644 4 88999988877776644 3445556667788888888875542 34557778888
Q ss_pred HhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchh
Q psy17257 591 WNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEV 669 (778)
Q Consensus 591 wn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~ev 669 (778)
.++... +..+...++.+++.-+.+.+.+ .++.+.-+++.++-+|+.+ .+.....++..+++.+.+.|.+ +++=|
T Consensus 144 ~~l~~~-~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~--dDiLv 218 (503)
T PF10508_consen 144 KKLASH-PEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS--DDILV 218 (503)
T ss_pred HHHhCC-chhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC--ccHHH
Confidence 998864 5567777788888888777775 2566778899999999877 5577777778889999998988 68889
Q ss_pred hHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC
Q psy17257 670 SYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS 713 (778)
Q Consensus 670 sy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~ 713 (778)
.=||.-+|.-|+. .+ +...--.+..+.++|..-+..=..+.
T Consensus 219 qlnalell~~La~-~~--~g~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 219 QLNALELLSELAE-TP--HGLQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred HHHHHHHHHHHHc-Ch--hHHHHHHhCCHHHHHHHHHhccccCC
Confidence 9999999999998 44 44444466778888888776654444
No 102
>KOG1020|consensus
Probab=87.30 E-value=27 Score=44.67 Aligned_cols=186 Identities=14% Similarity=0.209 Sum_probs=100.5
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhH
Q psy17257 456 MKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVL 535 (778)
Q Consensus 456 ~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~ 535 (778)
-.+...-++..|+++|..+=+..+.+|+ +..+..+..+.+...+ | |-++|+
T Consensus 898 ~erIlDtgvsVRKRvIKIlrdic~e~pd------------------------f~~i~~~cakmlrRv~-D----EEg~I~ 948 (1692)
T KOG1020|consen 898 IERILDTGVSVRKRVIKILRDICEETPD------------------------FSKIVDMCAKMLRRVN-D----EEGNIK 948 (1692)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCC------------------------hhhHHHHHHHHHHHhc-c----chhHHH
Confidence 3445566888999999999999999994 3344455556666555 4 226688
Q ss_pred HHHHHHHHHH-hccCCHHHHHHhhhhhhHHHHHHHHHHHHhh------hccchhHHHHHHHHHhcccccHHHHHHHHhcC
Q psy17257 536 RIAIYLLNSL-ACQVDNAHKILLGRLGVIKKMLRLIKDRIEK------QRCDDILEVAWSAMWNVTDETAINCARFLNNG 608 (778)
Q Consensus 536 ~~av~il~~l-~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~------~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~ 608 (778)
.++.-++-.+ ....++. ..+-|...-+..+++.+....+. +..+..+++..-. +..+|..-+...
T Consensus 949 kLv~etf~klWF~p~~~~-~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~-------~~~~~~~~v~~~ 1020 (1692)
T KOG1020|consen 949 KLVRETFLKLWFTPVPEV-NDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLK-------TMKESVKPVALA 1020 (1692)
T ss_pred HHHHHHHHHHhccCCCcc-cccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhh-------hhhhhhhHHHHh
Confidence 8888777665 2222321 22222222222222222222111 1122333332210 111122222222
Q ss_pred ----ChHHHHHHHhhCC--------CcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCch---hhHHH
Q psy17257 609 ----GMELFLNCLQYFP--------EKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIE---VSYNA 673 (778)
Q Consensus 609 ----g~~~~~~~l~~f~--------~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~e---vsy~a 673 (778)
-+++...||..=- .+.+=...+++.+.=.+---..||+|++++++..+.-+|.+.++.+| +-|++
T Consensus 1021 ~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~v 1100 (1692)
T KOG1020|consen 1021 KVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYV 1100 (1692)
T ss_pred hcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHH
Confidence 2334444443210 01111123677777677667889999999999999999998766555 77777
Q ss_pred HHHHH
Q psy17257 674 AGVLS 678 (778)
Q Consensus 674 ~gila 678 (778)
++|+-
T Consensus 1101 i~Ile 1105 (1692)
T KOG1020|consen 1101 IQILE 1105 (1692)
T ss_pred HHHHH
Confidence 77764
No 103
>KOG3763|consensus
Probab=86.97 E-value=0.43 Score=54.18 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=58.0
Q ss_pred HHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCC--Cc-chhhHhhcCCCCccEEeccCCCCCCCCCC
Q psy17257 218 TQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS--IV-KDNLDHICSLPLLRRLDISVSSDYPDYGN 294 (778)
Q Consensus 218 ~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~--~~-~~~~~~l~~L~~L~~LdLS~~~~~~~~g~ 294 (778)
..+-.+.|.+.+++||+|++. .-..++.+..-.++|+.|+|++|. +. +..+..++. ..|+.|-+.+|++.+ .
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~---t 285 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT---T 285 (585)
T ss_pred HHhhcCCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc---c
Confidence 334556777777777777765 111233344444677777777772 21 112222333 347778888888743 2
Q ss_pred CCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 295 YSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 295 ~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
| ..+.+.+..+....|+|..|| |..+.
T Consensus 286 f-~~~s~yv~~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 286 F-SDRSEYVSAIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred h-hhhHHHHHHHHHhcchheeec--CcccC
Confidence 3 344466676777888888876 66554
No 104
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=86.80 E-value=1.7 Score=45.73 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=103.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHH
Q psy17257 600 NCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSH 679 (778)
Q Consensus 600 ~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilah 679 (778)
..+.+++.+.++-++..|+.- +++.+|++++..+||.|.-..=|.-.-+-.-+..+.++|.++ .-.|.=.|...|++
T Consensus 4 ~~~~~l~~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 4 KHKNILEAQELQKLLCLLEST-EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNN 80 (254)
T ss_pred cccCCcCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHh
Confidence 345678888999999999987 489999999999999987665544333456688889999885 45777788888888
Q ss_pred HhccCCCccccccccHHHHHHHHHHHhcc--CCCCC-----------------ccceecccchhhHHhhccCCCchhhHH
Q psy17257 680 IASDGPEAWTIRYPAREKVLAKMVEAIER--WPIDS-----------------ERNINYRSFEPIIQLLRVYHTPECQHW 740 (778)
Q Consensus 680 l~~~~~~~w~~~~~~r~~~~~~~~~~i~~--w~~~~-----------------~~~v~yrsf~p~~~ll~~~~~~~~q~w 740 (778)
++.+.+..+.+. ....++.+.+.+ |+.+. ..++ .++...|++||... ....|.=
T Consensus 81 ls~~~en~~~Ik-----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G-~~~~k~~ 153 (254)
T PF04826_consen 81 LSVNDENQEQIK-----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSG-SEKTKVQ 153 (254)
T ss_pred cCCChhhHHHHH-----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcC-ChHHHHH
Confidence 888766555441 122333332222 22111 1223 45677899999864 5568889
Q ss_pred HHHHHHHhcccCCccccchhhhh
Q psy17257 741 SVWALANLTKVYPEKYCQVVEAE 763 (778)
Q Consensus 741 a~wa~~~~~~~~~~~y~~~~~~e 763 (778)
|++++-|+.. ||+-==.|+..+
T Consensus 154 vLk~L~nLS~-np~~~~~Ll~~q 175 (254)
T PF04826_consen 154 VLKVLVNLSE-NPDMTRELLSAQ 175 (254)
T ss_pred HHHHHHHhcc-CHHHHHHHHhcc
Confidence 9999999988 465322334333
No 105
>PRK14707 hypothetical protein; Provisional
Probab=85.63 E-value=1.5e+02 Score=39.94 Aligned_cols=310 Identities=16% Similarity=0.131 Sum_probs=191.1
Q ss_pred eCCCCHHHHHHHHHhcCChHHHHHHHHHHHHHhccccccCC--hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCC
Q psy17257 381 AGDCNEAQLLIAAKAYIDRPEMLQQVLNDLYHIFRYDTCVD--IEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKD 458 (778)
Q Consensus 381 ~g~~~~~qil~al~~y~~R~~~~~~aL~~L~~l~~~~~~~~--~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~ 458 (778)
.|.....-..+++..+.++..-.+.+..--.++.+-+.-.. ...-+.+++.|.-++|.+..-+.++-...-.++..+.
T Consensus 118 l~~~~~al~~n~~sk~~~~~~c~~a~a~i~~~~~~~~~~~~~l~~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~ 197 (2710)
T PRK14707 118 LGGYPSALFLNAFSKNLDSGRCERAVARLARHLRREDKARQTLNAQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDR 197 (2710)
T ss_pred ccchhHHHHHHHHhcCCCchHHHHHHHHHHHHhccccchhhhhccccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChh
Confidence 34455666778888888765433332221222322111001 1445788999999999998877666666566655553
Q ss_pred CCCCChHHHHHHHHHHHHHHhcCCCchhh---hhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhH
Q psy17257 459 RPVLSSLTKRHIITTILNGMHMHLEDDTM---MRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVL 535 (778)
Q Consensus 459 ~~~~~~~~~~~~i~~LL~am~~~~~~~~l---~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~ 535 (778)
.. -..-.+-|.++|+|+..+|++..= -+---.-|+++.=+ -..|+-..++ .+++.+++.- | ...-
T Consensus 198 ~~---~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l-~~~~~~q~va-~~lN~lsKwp-~------~~~C 265 (2710)
T PRK14707 198 LR---SAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL-RNELKPQELG-NALNALSKWA-D------TPVC 265 (2710)
T ss_pred hh---cccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH-HHhCChHHHH-HHHHHHhcCC-C------chHH
Confidence 21 222456788999999999965431 11112333443211 2344544444 6788899886 4 3333
Q ss_pred HHHHHHHHHHhccCCHHHHHHhh--hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHH
Q psy17257 536 RIAIYLLNSLACQVDNAHKILLG--RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELF 613 (778)
Q Consensus 536 ~~av~il~~l~~~~s~~~~~~l~--~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~ 613 (778)
+-|+ +.++.++..+ ..... +...+...|+.+..+.+...|.....-.-.-||. .|+-|+. ++..++.-.
T Consensus 266 ~~a~---~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~----d~~l~~~-~~~~~~~~~ 336 (2710)
T PRK14707 266 AAAA---SALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD----DPELCKA-LNARGLSTA 336 (2710)
T ss_pred HHHH---HHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc----cHhhhhc-cchHHHHHH
Confidence 3333 3334444322 22222 3455777888888888888887776666566666 6777644 478889999
Q ss_pred HHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccc
Q psy17257 614 LNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYP 693 (778)
Q Consensus 614 ~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~ 693 (778)
+.+|.+.|++..=.+..-.|-+-++.-.+||+.|- ..-+....+-|.+| ++..+---||--||--+.+.++.=...++
T Consensus 337 LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKW-p~~~~c~~aa~~LA~~l~~d~~l~~~~~~ 414 (2710)
T PRK14707 337 LNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKW-PDTPVCAAAASALAEHVVDDLELRKGLDP 414 (2710)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcC-CCchHHHHHHHHHHHHhccChhhhhhcch
Confidence 99999999888777888888888888889998665 33344455666677 56777777777676665544322211122
Q ss_pred cHHHHHHHHHHHhccCCCCC-ccc
Q psy17257 694 AREKVLAKMVEAIERWPIDS-ERN 716 (778)
Q Consensus 694 ~r~~~~~~~~~~i~~w~~~~-~~~ 716 (778)
..| -....|..+||... |++
T Consensus 415 --Q~v-an~lnalsKWPd~~~C~~ 435 (2710)
T PRK14707 415 --QGV-SNALNALAKWPDLPICGQ 435 (2710)
T ss_pred --hhH-HHHHHHhhcCCcchhHHH
Confidence 233 33468999999875 665
No 106
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.61 E-value=1.1 Score=29.14 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=14.3
Q ss_pred CCCccEEEecCCcccChhHHHHH
Q psy17257 198 APKLRRFSLIGHTLMSQSICTQL 220 (778)
Q Consensus 198 l~~L~~L~Ls~~~l~s~~~l~~~ 220 (778)
||+|+.|+|++|..+++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 45677777777765466665533
No 107
>PRK09687 putative lyase; Provisional
Probab=83.44 E-value=7.7 Score=41.41 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=55.3
Q ss_pred hhHHHHHHHh-hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccce--------ecc
Q psy17257 650 SKFIEVFANL-VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNI--------NYR 720 (778)
Q Consensus 650 ~~~i~~~~~l-l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v--------~yr 720 (778)
++.+..+..+ +++ +.-+|...|++.|.|+-+ +...|.. .+.+.+..+....+..-++.+ +=+
T Consensus 89 ~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~-~~~~~~~------~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ 159 (280)
T PRK09687 89 DNVFNILNNLALED--KSACVRASAINATGHRCK-KNPLYSP------KIVEQSQITAFDKSTNVRFAVAFALSVINDEA 159 (280)
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccc-cccccch------HHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH
Confidence 3456666666 444 468899999999999965 3334521 122222222221111111111 124
Q ss_pred cchhhHHhhccCCCchhhHHHHHHHHHhccc
Q psy17257 721 SFEPIIQLLRVYHTPECQHWSVWALANLTKV 751 (778)
Q Consensus 721 sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~ 751 (778)
...++.++|. ...|.|.+||++|+-++...
T Consensus 160 ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 160 AIPLLINLLK-DPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHhcCCCC
Confidence 6688889998 56778999999999998443
No 108
>KOG3763|consensus
Probab=83.08 E-value=1.5 Score=49.99 Aligned_cols=83 Identities=28% Similarity=0.295 Sum_probs=60.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCc--cccCCcccchHHHhcc-ccccEEEcCCCCCcc------
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKC--MFLFDNKDLSFLAEFK-DTLVSLVLFNVSIVK------ 266 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~--~i~~~~~~l~~L~~l~-~~L~~L~L~~~~~~~------ 266 (778)
.+.|.+..++|++|++-.-+.+..+....|+|..|+||+| .+. +...+.++| ..|++|.|.+|++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~----~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS----SESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc----chhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 5789999999999998555678878888999999999998 454 233343332 269999999999753
Q ss_pred hhhHhhc-CCCCccEEe
Q psy17257 267 DNLDHIC-SLPLLRRLD 282 (778)
Q Consensus 267 ~~~~~l~-~L~~L~~Ld 282 (778)
..+..+. ..|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 2233343 358888887
No 109
>KOG0414|consensus
Probab=83.03 E-value=29 Score=43.22 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=73.5
Q ss_pred ceEEeCCCCHHHHHHHHHhcCChHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHhhcc--ccchhHHHHHHHHHHH
Q psy17257 377 ALRVAGDCNEAQLLIAAKAYIDRPEMLQQVLNDLYHIFRYDTCVDIEHALVVVLEALDTHLT--ERHIQISGSANLFYIV 454 (778)
Q Consensus 377 ~l~v~g~~~~~qil~al~~y~~R~~~~~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~h~~--~~~vq~~gsacL~~L~ 454 (778)
.+...|.++++.+.+++..-.++.- + +....-+.++..+|+++++++.. +..+|.+|+-+|..+
T Consensus 885 e~dlig~tseDd~~d~i~~icE~eL------------l-~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~kl- 950 (1251)
T KOG0414|consen 885 ELDLIGGTSEDDLADLISGICEKEL------------L-YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKL- 950 (1251)
T ss_pred cccccCCCcchhHHHHHHHHHHHHH------------h-cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHH-
Confidence 3566788888888887765543322 1 11122357788999999999765 455999999999877
Q ss_pred hcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC
Q psy17257 455 KMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI 500 (778)
Q Consensus 455 ~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i 500 (778)
..++..-...-...|+.+|+..|+ ..+--|+-..||.+.+
T Consensus 951 -----M~iSa~fces~l~llftimeksp~-p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 951 -----MCISAEFCESHLPLLFTIMEKSPS-PRIRSNLVVALGDLAV 990 (1251)
T ss_pred -----hhhhHHHHHHHHHHHHHHHhcCCC-ceeeecchheccchhh
Confidence 334677777788899999999994 3455578777777654
No 110
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.81 E-value=1 Score=28.55 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=9.2
Q ss_pred CCccEEecCCCCCCCHhHHHHH
Q psy17257 109 HHVQELELIKCANVSQASLEVL 130 (778)
Q Consensus 109 ~~L~~LdLs~~~~lt~~~l~~L 130 (778)
++|++|+|++| .|++.++..|
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34555555555 3555444444
No 111
>KOG0168|consensus
Probab=81.91 E-value=48 Score=40.05 Aligned_cols=70 Identities=21% Similarity=0.221 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhccccccCC----hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhc
Q psy17257 386 EAQLLIAAKAYIDRPEMLQQVLNDLYHIFRYDTCVD----IEHALVVVLEALDTHLTERHIQISGSANLFYIVKM 456 (778)
Q Consensus 386 ~~qil~al~~y~~R~~~~~~aL~~L~~l~~~~~~~~----~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~ 456 (778)
..+++.-++.-. -+.-+.+++.++.+++-+.++.. +.+-+--++.++-+|..+..|++.|++||+||+--
T Consensus 169 ~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 169 AKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred HHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 455666555544 23335567778888776555432 25556667788889999999999999999999853
No 112
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=81.88 E-value=40 Score=32.54 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=89.8
Q ss_pred HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHH--HHHHHH
Q psy17257 514 ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEV--AWSAMW 591 (778)
Q Consensus 514 ~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~--~~s~lw 591 (778)
+++.++...... +.++..|.-+++.+. ...+..+-+.+-+.++.+....-.|..+.+ +++++.
T Consensus 7 ~lL~~L~~~~~~------~~~r~~a~v~l~k~l---------~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lf 71 (157)
T PF11701_consen 7 TLLTSLDMLRQP------EEVRSHALVILSKLL---------DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALF 71 (157)
T ss_dssp HHHHHHHCTTTS------CCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHC
T ss_pred HHHHHhcccCCC------HhHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHh
Confidence 345555543323 667777777776662 222233455666667777766555555544 555555
Q ss_pred hcccccHHHHHHHHh-cCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhh
Q psy17257 592 NVTDETAINCARFLN-NGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVS 670 (778)
Q Consensus 592 n~tde~p~~c~~f~~-~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evs 670 (778)
-+ .|+-|...+. +|-++.++.-..+...+...|..++.+++ .|=+++-+...+.+.+++...+++....++.+|.
T Consensus 72 p~---~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~-aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir 147 (157)
T PF11701_consen 72 PG---PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLS-AACIDKSCRTFISKNYVSWLKELYKNSKDDSEIR 147 (157)
T ss_dssp TT---THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHH-HHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CH
T ss_pred CC---CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHH-HHHccHHHHHHHHHHHHHHHHHHHccccchHHHH
Confidence 53 3666666554 45555565556556678889999999986 4445665666888889999999996544444477
Q ss_pred HHHHHHHH
Q psy17257 671 YNAAGVLS 678 (778)
Q Consensus 671 y~a~gila 678 (778)
..|+=+|+
T Consensus 148 ~~A~v~L~ 155 (157)
T PF11701_consen 148 VLAAVGLC 155 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887775
No 113
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.76 E-value=0.99 Score=26.34 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=5.9
Q ss_pred CCCCeEeccCcccc
Q psy17257 225 PHLTHLNLSKCMFL 238 (778)
Q Consensus 225 p~L~~LdLS~~~i~ 238 (778)
++|+.|+|++|.++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 34555555555544
No 114
>PF05536 Neurochondrin: Neurochondrin
Probab=81.68 E-value=1.1e+02 Score=35.98 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC
Q psy17257 421 DIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI 500 (778)
Q Consensus 421 ~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i 500 (778)
++.+.+-++++++..... ..+...+..||..++-. ..|...-...+.|..|..++.+++.....--+.|..|++..-
T Consensus 95 ~~~~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias~--~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 95 QMVSRIPLLLEILSSSSD-LETVDDALQCLLAIASS--PEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHcC--cHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcc
Confidence 356677888888888776 45566888899999843 345555556678889999988877655555567777777533
Q ss_pred CccccccHHHHHHHHHHHHhhhc-ccCCCCCCchhHHHHHHHHHHHhccCCHH-HHHHhh-h--hhhHHHHHHHHHHHHh
Q psy17257 501 PQDVQFDYDRLVRILLHIITEME-HESNSNGSNFVLRIAIYLLNSLACQVDNA-HKILLG-R--LGVIKKMLRLIKDRIE 575 (778)
Q Consensus 501 l~~~~f~~~~~~~~~l~~~~~~~-~d~~~~~~~~~~~~av~il~~l~~~~s~~-~~~~l~-~--~~~~~~ll~~i~~~~~ 575 (778)
.+..+ ++......++..+...- .+ + ..-.--...+++.+..+.+.. .....+ + ..+...+-++++.|..
T Consensus 172 ~~~~~-~~~~~l~~il~~La~~fs~~----~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~ 245 (543)
T PF05536_consen 172 QKSWA-EDSQLLHSILPSLARDFSSF----H-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLT 245 (543)
T ss_pred hhhhh-hhHHHHHHHHHHHHHHHHhh----c-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCC
Confidence 22222 22222222223333221 01 0 011111234555444444211 111111 1 1334555566666665
Q ss_pred hhccchhHHHHHHHH------Hhccccc--HH-HHHHHHhcCChHHHHH--HHhhCCCcHH-------------HHHHHH
Q psy17257 576 KQRCDDILEVAWSAM------WNVTDET--AI-NCARFLNNGGMELFLN--CLQYFPEKDE-------------LLRNMM 631 (778)
Q Consensus 576 ~~~~d~~l~~~~s~l------wn~tde~--p~-~c~~f~~~~g~~~~~~--~l~~f~~~~~-------------l~~~~l 631 (778)
...-+..+..+-+.+ |=++|.. +. =+--+++--.+++=+. -|-..++.++ +.+.++
T Consensus 246 ~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I 325 (543)
T PF05536_consen 246 PSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFI 325 (543)
T ss_pred HHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 544455555533332 6677775 11 1122222222322211 1101122222 222244
Q ss_pred hhhhhhhhhhhhh--h----cccc--hhHHHHHHHhhccCCCCch-hhHHHHHHHHHHhccCCCccccccc--cHHHHHH
Q psy17257 632 GLLGNVAEVKSLR--P----KLMT--SKFIEVFANLVSSKSDGIE-VSYNAAGVLSHIASDGPEAWTIRYP--AREKVLA 700 (778)
Q Consensus 632 gll~niaev~~l~--~----~l~~--~~~i~~~~~ll~~~~~~~e-vsy~a~gilahl~~~~~~~w~~~~~--~r~~~~~ 700 (778)
+.+-+..|.++.. + ++.+ .+-+.....+|++..++-. -.=+....+.-+. +|...++ .|+++.+
T Consensus 326 ~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~-----~WLaEe~~~lr~~v~~ 400 (543)
T PF05536_consen 326 GYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLG-----AWLAEETSALRKEVYG 400 (543)
T ss_pred HHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH-----HHHHhChHHHHHHHHH
Confidence 4444433332210 0 0000 2335555566665443211 0103333333333 3876655 4777766
Q ss_pred HHHHHhccCCCCCccceecc--cchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHH
Q psy17257 701 KMVEAIERWPIDSERNINYR--SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQN 771 (778)
Q Consensus 701 ~~~~~i~~w~~~~~~~v~yr--sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~ 771 (778)
.|---+.-|.....+.=..+ ++..+ .|-+=|+.|++. .++=|..+.++||.++|.+
T Consensus 401 Ll~~ll~~~~~~~~~~~~~~~~~~d~~-------------r~lLPaL~~lt~--e~~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 401 LLPFLLSLYRESFQEAEPAREGPLDFL-------------RFLLPALCHLTA--EEEGRKILLSNGGWKLLCD 458 (543)
T ss_pred HHHHHHHHHhhhhhhcccccccchhHH-------------HHHHHHHhhhhc--cHHHHHHHHhCCcHHHHHH
Confidence 65555555555443311111 22223 333447888887 4677888999999887764
No 115
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.38 E-value=1.1 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=8.6
Q ss_pred CCccEEEecCCcccChhHHH
Q psy17257 199 PKLRRFSLIGHTLMSQSICT 218 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~ 218 (778)
++|++|+|++|.+ +++++.
T Consensus 2 ~~L~~L~l~~n~i-~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQI-TDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBE-HHHHHH
T ss_pred CCCCEEEccCCcC-CHHHHH
Confidence 4555555555554 444443
No 116
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=78.86 E-value=83 Score=35.71 Aligned_cols=242 Identities=14% Similarity=0.256 Sum_probs=131.9
Q ss_pred cchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHH
Q psy17257 440 RHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHII 519 (778)
Q Consensus 440 ~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~ 519 (778)
...+..|..||..|.+.+..+ ..-...+.+..|...+...+...|+|=++++ .-|+
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R--~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll----------------------~lWl 213 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYR--FAFVLADGVPTLVKLLSNATLGFQLQYQSIF----------------------CIWL 213 (429)
T ss_pred cchHHHHHHHHHHHhCCchHH--HHHHHccCHHHHHHHHhhccccHHHHHHHHH----------------------HHHH
Confidence 344556678999988876543 2223344677777777655544555533333 2355
Q ss_pred hhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhccccc--
Q psy17257 520 TEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDET-- 597 (778)
Q Consensus 520 ~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~-- 597 (778)
..|+ ++-.+.+.+.+++..++++++....+++ .++++++++|+.+..
T Consensus 214 LSF~---------------------------~~~~~~~~~~~~i~~l~~i~k~s~KEKv----vRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 214 LTFN---------------------------PHAAEVLKRLSLIQDLSDILKESTKEKV----IRIVLAIFRNLISKRVD 262 (429)
T ss_pred Hhcc---------------------------HHHHHhhccccHHHHHHHHHHhhhhHHH----HHHHHHHHHHHhhcccc
Confidence 5554 1111233346789999999999887765 488899999988743
Q ss_pred ----HHHHHHHHhcCChHHHHHHHh--hCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhh
Q psy17257 598 ----AINCARFLNNGGMELFLNCLQ--YFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVS 670 (778)
Q Consensus 598 ----p~~c~~f~~~~g~~~~~~~l~--~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evs 670 (778)
...+...+++|.+.++ +.|+ +| .|+++...+=-|-.-+.+. +++.+ ++....=+.|
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l-~~L~~rk~-~DedL~edl~~L~e~L~~~~k~lts-------fD~Y~~El~s-------- 325 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTL-QSLEQRKY-DDEDLTDDLKFLTEELKNSVQDLSS-------FDEYKSELRS-------- 325 (429)
T ss_pred cchhhhHHHHHHHcChHHHH-HHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHhc--------
Confidence 3344555655555544 5554 35 4665554433222222222 22221 1111111222
Q ss_pred HHHHHHHHHHhccCCCccccccccH-HHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhc
Q psy17257 671 YNAAGVLSHIASDGPEAWTIRYPAR-EKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLT 749 (778)
Q Consensus 671 y~a~gilahl~~~~~~~w~~~~~~r-~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~ 749 (778)
|-=.|+. +-| +.+=. +.+.++... +|-=++-...+|..++-|.+.-=|.==|.+++
T Consensus 326 -------------g~L~WSp--~H~se~FW~---EN~~kf~~~-----~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 326 -------------GRLHWSP--VHKSEKFWR---ENADRLNEK-----NYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred -------------CCccCCC--CCCCchHHH---HHHHHHHhc-----chHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 2223542 111 11111 111111111 23334556677766777777766666677788
Q ss_pred ccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 750 KVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 750 ~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.-||..= ..+.+-||-+.+=++.+||+
T Consensus 383 r~~P~gr-~i~~~lg~K~~vM~Lm~h~d 409 (429)
T cd00256 383 RHYPRGK-DVVEQLGGKQRVMRLLNHED 409 (429)
T ss_pred HHCccHH-HHHHHcCcHHHHHHHhcCCC
Confidence 8888632 44677888888888888875
No 117
>KOG4500|consensus
Probab=77.30 E-value=27 Score=38.96 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHH-HHhhhccchhHHH----HHHHHHhcccccHHHHHHHHhcC
Q psy17257 534 VLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKD-RIEKQRCDDILEV----AWSAMWNVTDETAINCARFLNNG 608 (778)
Q Consensus 534 ~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~-~~~~~~~d~~l~~----~~s~lwn~tde~p~~c~~f~~~~ 608 (778)
+..|+.-|+...+.. ..-+-++.+.|+++++++++++ +...+--|..-.| =+-++.-.-||+. +.+-.+
T Consensus 240 ~~eM~feila~~aen--d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM----q~L~~~ 313 (604)
T KOG4500|consen 240 IDEMIFEILAKAAEN--DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM----QKLHAD 313 (604)
T ss_pred hhhHHHHHHHHHhcC--cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH----HHHhcC
Confidence 456755555443332 2345577788999999999999 5544322221111 1223444567775 445554
Q ss_pred ChHHHHHHHhhCCC-cHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhcc---CCCCchhhHHHHHHHHHHhc
Q psy17257 609 GMELFLNCLQYFPE-KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSS---KSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 609 g~~~~~~~l~~f~~-~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~---~~~~~evsy~a~gilahl~~ 682 (778)
| .+|-....=|+. +..+++----.+||.|--+..=-++|..+++..+.++|.. ..+++++.|-+...|-|++=
T Consensus 314 p-~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 P-QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred c-HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 4 333333334443 3344444444579999888777789999999999999854 23588999999998888764
No 118
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=75.00 E-value=8.2 Score=40.39 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=57.5
Q ss_pred hccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHH
Q psy17257 546 ACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDE 625 (778)
Q Consensus 546 ~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~ 625 (778)
+|-++|..+..++....|+-++.++...-...+. .-++.+|..+-=++|.|.+.|=+.+|++.+...++.=..+.+
T Consensus 118 l~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~----~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~ 193 (257)
T PF08045_consen 118 LCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQ----SACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRE 193 (257)
T ss_pred HHHcCchHHHHHhhhhhHHHHHHHhccCCCchHH----HHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHH
Confidence 5667888888999889999999998222111122 224455555444589999999999999999999997665555
Q ss_pred HHHH
Q psy17257 626 LLRN 629 (778)
Q Consensus 626 l~~~ 629 (778)
+.-|
T Consensus 194 ~r~K 197 (257)
T PF08045_consen 194 LRLK 197 (257)
T ss_pred HhHH
Confidence 5544
No 119
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=73.86 E-value=4 Score=29.56 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=32.2
Q ss_pred hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 643 LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 643 l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
-+..+.....+..+.+||++ ...+|...|++.|++|+.
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~--~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKS--PDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTS--SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhC
Confidence 34556678889999999997 689999999999999863
No 120
>PRK14707 hypothetical protein; Provisional
Probab=72.91 E-value=2.4e+02 Score=38.16 Aligned_cols=269 Identities=15% Similarity=0.094 Sum_probs=157.7
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHHhcc-ccccCCh-HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCC
Q psy17257 385 NEAQLLIAAKAYIDRPEMLQQVLNDLYHIFR-YDTCVDI-EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVL 462 (778)
Q Consensus 385 ~~~qil~al~~y~~R~~~~~~aL~~L~~l~~-~~~~~~~-~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~ 462 (778)
+..+++++|..|.+...--..+..-.-.+.. -+...++ ...+.-++.|+-+.|....---++++.--.+.... .+
T Consensus 332 ~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~---~l 408 (2710)
T PRK14707 332 GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDL---EL 408 (2710)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCh---hh
Confidence 4678888998888754322222111111111 1112222 56677788888899977655556666555655332 12
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHH
Q psy17257 463 SSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLL 542 (778)
Q Consensus 463 ~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il 542 (778)
....-.+-|..+|+|+..+|+.. +| ++++.-+
T Consensus 409 ~~~~~~Q~van~lnalsKWPd~~-------------------------~C-----------------------~~aa~~l 440 (2710)
T PRK14707 409 RKGLDPQGVSNALNALAKWPDLP-------------------------IC-----------------------GQAVSAL 440 (2710)
T ss_pred hhhcchhhHHHHHHHhhcCCcch-------------------------hH-----------------------HHHHHHH
Confidence 33333456777888888888533 22 2222222
Q ss_pred HHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCC
Q psy17257 543 NSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE 622 (778)
Q Consensus 543 ~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~ 622 (778)
..-+.+ +.+--..+ +..-|...|..+..+-+..+|-...+..-..||- .|+-|+.| +-..+..-+..|.+||+
T Consensus 441 A~~la~-d~~l~~~~-~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~----~~~l~~a~-~~q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 441 AGRLAH-DTELCKAL-DPINVTQALDALSKWPDTPICGQTASALAARLAH----ERRLRKAL-KPQEVVIALHSLSKWPD 513 (2710)
T ss_pred HHHHhc-cHHHHhhc-ChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc----cHHHHhhc-CHHHHHHHHHHhhcCCC
Confidence 111111 11111111 2222667778888888888888888887777775 34445544 66778888999999998
Q ss_pred cHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHH
Q psy17257 623 KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKM 702 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~ 702 (778)
...-.+.+.-+-|-+.--..|+ ++|+..-+....+-|..+ ++-+.--.|++-||.+.-+ +.+......-..| --+
T Consensus 514 ~~~c~~A~~~lA~rl~~~~~l~-~~~~~~~~~~~lnalSKw-p~s~~C~~A~~~iA~~l~~--~~~~~~~L~aq~V-s~l 588 (2710)
T PRK14707 514 TPICAEAASALAERVVDELQLR-KAFDAHQVVNTLKALSKW-PDKQLCAVAASGLAERLAD--EPQLPKDLHRQGV-VIV 588 (2710)
T ss_pred cHHHHHHHHHHHHHhccchhhh-hhhhhHHHHHHHHhhhcC-CchhHHHHHHHHHHHHhhc--chhhHHhhhhhHH-HHH
Confidence 8866677777777766444454 466666677777777555 4556666677666665443 2344333332233 345
Q ss_pred HHHhccCCCCCccc
Q psy17257 703 VEAIERWPIDSERN 716 (778)
Q Consensus 703 ~~~i~~w~~~~~~~ 716 (778)
..+..|||.....|
T Consensus 589 lNaLSKWP~~~aC~ 602 (2710)
T PRK14707 589 LNALSKWPDTAVCA 602 (2710)
T ss_pred HHhhccCCCcHHHH
Confidence 78999999986444
No 121
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=72.20 E-value=5.6 Score=39.30 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=51.1
Q ss_pred cHHHHHHHHhcCChHHHHHHHhhCCCcH-------HHHHHHHhhhhhhhhhhh-hhhcccchhHHHHHHHhhccCCCCch
Q psy17257 597 TAINCARFLNNGGMELFLNCLQYFPEKD-------ELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSKSDGIE 668 (778)
Q Consensus 597 ~p~~c~~f~~~~g~~~~~~~l~~f~~~~-------~l~~~~lgll~niaev~~-l~~~l~~~~~i~~~~~ll~~~~~~~e 668 (778)
...=++.|++.||++.++++|..+.... +++..++.-+.-|...+. +..-+-.++++..+...|.+ +.+.
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s--~~~~ 173 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS--PNIK 173 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T--TSHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC--CCHH
Confidence 3344689999999999999999875432 455444443333333322 22223357788888888887 4677
Q ss_pred hhHHHHHHHHHHh
Q psy17257 669 VSYNAAGVLSHIA 681 (778)
Q Consensus 669 vsy~a~gilahl~ 681 (778)
+.=.|.-|||.+.
T Consensus 174 ~r~~~leiL~~lc 186 (187)
T PF06371_consen 174 TRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
No 122
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=71.77 E-value=6.8 Score=30.23 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHH
Q psy17257 625 ELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHI 680 (778)
Q Consensus 625 ~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl 680 (778)
.++...+-.||++++...-.-+-..++.+..+..+|.+. +-+|.-.||..|..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 466777788899887644222225677889999999874 449999999998764
No 123
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.05 E-value=4.2 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=12.8
Q ss_pred CCccEEEecCCcccChhHHHHHh
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLY 221 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~ 221 (778)
++|+.|+|++|.+ ++++...++
T Consensus 2 ~~L~~LdL~~N~i-~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKL-GDEGARALA 23 (28)
T ss_pred CccCEEECCCCCC-CHHHHHHHH
Confidence 4566666666666 555554443
No 124
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=68.26 E-value=2.9 Score=26.01 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=9.1
Q ss_pred CCCeEeccCcccc
Q psy17257 226 HLTHLNLSKCMFL 238 (778)
Q Consensus 226 ~L~~LdLS~~~i~ 238 (778)
+|++||||+|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777766
No 125
>KOG1788|consensus
Probab=68.24 E-value=31 Score=42.37 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLV 660 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll 660 (778)
.++.+.|-.|..+-....+|=+.|-++.|+.+++..+- .++-...+|.++.+..-|.-- -+.++++-+.+++|
T Consensus 657 ltitvgwDcLisllKnnteNqklFreanGvklilpfli----ndehRSslLrivscLitvdpk---qvhhqelmalVdtL 729 (2799)
T KOG1788|consen 657 LTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI----NDEHRSSLLRIVSCLITVDPK---QVHHQELMALVDTL 729 (2799)
T ss_pred hhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee----chHHHHHHHHHHHHHhccCcc---cccHHHHHHHHHHH
Confidence 34445677777788888889999999999999988773 555667799999998877543 33567888888888
Q ss_pred cc
Q psy17257 661 SS 662 (778)
Q Consensus 661 ~~ 662 (778)
++
T Consensus 730 ks 731 (2799)
T KOG1788|consen 730 KS 731 (2799)
T ss_pred Hh
Confidence 87
No 126
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.70 E-value=6.6 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.5
Q ss_pred CccEEecCCCCCCCHhHHHHHH
Q psy17257 110 HVQELELIKCANVSQASLEVLN 131 (778)
Q Consensus 110 ~L~~LdLs~~~~lt~~~l~~L~ 131 (778)
+|++|||++| .+++.+...++
T Consensus 3 ~L~~LdL~~N-~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNN-KLGDEGARALA 23 (28)
T ss_pred ccCEEECCCC-CCCHHHHHHHH
Confidence 4555555554 35554444443
No 127
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=66.78 E-value=35 Score=28.67 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=59.2
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccc
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWT 689 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~ 689 (778)
++.+++.|.+ ..++.++..+.-.||++. .++.+..+.+++.+ +...|...|+-.|+.+-+
T Consensus 1 i~~L~~~l~~-~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQN-DPDPQVRAEAARALGELG----------DPEAIPALIELLKD--EDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHT-SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCC-------
Confidence 3566777765 346778888888888432 35678889999966 567888888888887611
Q ss_pred cccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHH
Q psy17257 690 IRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWAL 745 (778)
Q Consensus 690 ~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~ 745 (778)
.+.+.++..++.....+.++.+|++||
T Consensus 61 -----------------------------~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -----------------------------PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -----------------------------HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 123344455666666677788888876
No 128
>PF05536 Neurochondrin: Neurochondrin
Probab=64.43 E-value=84 Score=36.95 Aligned_cols=139 Identities=15% Similarity=0.142 Sum_probs=82.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
..+...|+.|++.... +++-...=+=.+-|..+++++....+. .+..-++..|..+. .+|+-.+.|++.|++.
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~----~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~ 143 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDL----ETVDDALQCLLAIA-SSPEGAKALLESGAVP 143 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCch----hHHHHHHHHHHHHH-cCcHhHHHHHhcCCHH
Confidence 4466788888877665 333221111124577788888777653 34455555577777 7899999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccch------hHHHHHHHhhccCCCCchhhHHHHHHHHHHhccC
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTS------KFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~------~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~ 684 (778)
.+.+++.+-+..-+ ..+.++.++.-. ...+.+.+ ..+..+.+...+ .+=+..+-++-+|+++.+..
T Consensus 144 ~L~ei~~~~~~~~E---~Al~lL~~Lls~--~~~~~~~~~~~~l~~il~~La~~fs~--~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 144 ALCEIIPNQSFQME---IALNLLLNLLSR--LGQKSWAEDSQLLHSILPSLARDFSS--FHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHhCcchHH---HHHHHHHHHHHh--cchhhhhhhHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHhcCcC
Confidence 99999998443333 333333333211 11222221 123333344433 23355677788888888754
No 129
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=60.89 E-value=66 Score=35.71 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=51.7
Q ss_pred HHHHhh-hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhc---CChHHHHHHHhhCCCcH----
Q psy17257 553 HKILLG-RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNN---GGMELFLNCLQYFPEKD---- 624 (778)
Q Consensus 553 ~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~---~g~~~~~~~l~~f~~~~---- 624 (778)
|...+. +.+...+.+..+-....... ...+--++..+-|+|...|++|..|-.. ++...+..++..+-..+
T Consensus 257 q~~l~~~~~~~l~~~~~~l~~~~~~~~-~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~ 335 (361)
T PF07814_consen 257 QSYLLSHRSSLLPQLLSTLLRQCDDQV-IQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVP 335 (361)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccc
Confidence 555555 23333344443333332221 2224556777999999999999999877 44444444544333211
Q ss_pred -----HHHHHHHhhhhhhhhhhh
Q psy17257 625 -----ELLRNMMGLLGNVAEVKS 642 (778)
Q Consensus 625 -----~l~~~~lgll~niaev~~ 642 (778)
++..=+||+|-|..|..+
T Consensus 336 ~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 336 EESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccchHHHHHHHhHHHheeeCc
Confidence 133338999999988644
No 130
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=60.41 E-value=15 Score=33.35 Aligned_cols=14 Identities=7% Similarity=0.373 Sum_probs=5.8
Q ss_pred hccCCCCCeEeccC
Q psy17257 221 YRDMPHLTHLNLSK 234 (778)
Q Consensus 221 ~~~lp~L~~LdLS~ 234 (778)
+.++++|+.+.+..
T Consensus 54 F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 54 FSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT-EEEEETS
T ss_pred eecccccccccccc
Confidence 44454555555543
No 131
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=60.29 E-value=5.4 Score=35.59 Aligned_cols=33 Identities=30% Similarity=0.675 Sum_probs=25.5
Q ss_pred CCchhhHHHHHHHHHhcccCCc--cccchhhhhch
Q psy17257 733 HTPECQHWSVWALANLTKVYPE--KYCQVVEAEGG 765 (778)
Q Consensus 733 ~~~~~q~wa~wa~~~~~~~~~~--~y~~~~~~e~g 765 (778)
+-|-..=||+|||.|+|..||+ ++..=|..+|-
T Consensus 42 ~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~~ 76 (102)
T PF09759_consen 42 HNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQGV 76 (102)
T ss_pred ccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccCC
Confidence 4677788999999999999987 56665555443
No 132
>KOG0946|consensus
Probab=60.14 E-value=2.3e+02 Score=34.39 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCC
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVL--SSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIP 501 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~--~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il 501 (778)
..++.++.++++--.+..+--++...++.+++.+..... ...+-.++=..+-.+|=..+
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~q------------------- 121 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQ------------------- 121 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCc-------------------
Confidence 345556666666666666666777777888777652111 01011111111111111111
Q ss_pred ccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHh-hhhhhHHHHHHHHHHHHhhhccc
Q psy17257 502 QDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILL-GRLGVIKKMLRLIKDRIEKQRCD 580 (778)
Q Consensus 502 ~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l-~~~~~~~~ll~~i~~~~~~~~~d 580 (778)
.-..++|.++..+ | -.|++-||.+++.+..+-.++-...+ .-.--|.+|+..+++..+- +-+
T Consensus 122 --------d~I~lll~~~e~~--D------F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~-IRN 184 (970)
T KOG0946|consen 122 --------DNITLLLQSLEEF--D------FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREP-IRN 184 (970)
T ss_pred --------hhHHHHHHHHHhh--c------hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhh-hch
Confidence 1123566666665 4 67889999999999888888855544 4556678888888877643 223
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCC-cH-HHHHHHHhhhhhhh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE-KD-ELLRNMMGLLGNVA 638 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~-~~-~l~~~~lgll~nia 638 (778)
..+-+ |--+|..+|.-=+.-.-+.+++-++..++.=++ +. -+...+|-+|+|+-
T Consensus 185 e~iLl----L~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 185 EAILL----LSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred hHHHH----HHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 33322 233444555544555566677777777776542 22 24577888888774
No 133
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=56.67 E-value=3.5e+02 Score=30.93 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhcCC-----hHHHHHHHHHHHHHhc---------cccccCC-hHHHHHHHHHHHHhhcc---------------
Q psy17257 389 LLIAAKAYID-----RPEMLQQVLNDLYHIF---------RYDTCVD-IEHALVVVLEALDTHLT--------------- 438 (778)
Q Consensus 389 il~al~~y~~-----R~~~~~~aL~~L~~l~---------~~~~~~~-~~e~l~lV~~am~~h~~--------------- 438 (778)
||++++-|.. .+-+..+.+..+...- ......+ ..|+++.++-+|=.++.
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Q ss_pred -----------ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCC---------------chhhhhhHH
Q psy17257 439 -----------ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLE---------------DDTMMRNGC 492 (778)
Q Consensus 439 -----------~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~---------------~~~l~~n~~ 492 (778)
...+++..++-||-+|-..-...-...+..+++..+..+++.|-. +.+..--.+
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Q ss_pred hhhccC--cCCcccc-cc---HHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHH----------
Q psy17257 493 LTLCQF--KIPQDVQ-FD---YDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKIL---------- 556 (778)
Q Consensus 493 l~l~~~--~il~~~~-f~---~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~---------- 556 (778)
..+.|- +.+..+. .+ +.+++.++.+.+....++ ........++++.+..= +.+....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~------~~l~~~~~~~in~L~nl-pl~~~~~l~~~~~~~~~ 233 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSS------PPLDPPHSHAINALLNL-PLECLDSLLSPKFQQSS 233 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCC------CcchhhHHHHHHHHhCC-ChHHHhhhhcccCCccc
Q ss_pred ----hhhhhhHHHHHHHHHHHHhhhc---cchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHH
Q psy17257 557 ----LGRLGVIKKMLRLIKDRIEKQR---CDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRN 629 (778)
Q Consensus 557 ----l~~~~~~~~ll~~i~~~~~~~~---~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~ 629 (778)
......+..++++++.++.... .|..+.=.+.+|-++...+ ..-+.|+...=+.---++=..-...+.+--+
T Consensus 234 ~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~r 312 (446)
T PF10165_consen 234 LFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSR 312 (446)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHH
Q ss_pred HHhhhhhh-hhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHH
Q psy17257 630 MMGLLGNV-AEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSH 679 (778)
Q Consensus 630 ~lgll~ni-aev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilah 679 (778)
++.|+.+. ..+++.-.+++..=.=+--.++.+-...| ||||.|++
T Consensus 313 LlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG-----~AaG~L~~ 358 (446)
T PF10165_consen 313 LLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYVGYG-----NAAGFLAS 358 (446)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHcCch-----hHHHHHHH
No 134
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=55.19 E-value=9.4 Score=24.54 Aligned_cols=15 Identities=33% Similarity=0.580 Sum_probs=10.3
Q ss_pred CCCCCeEeccCcccc
Q psy17257 224 MPHLTHLNLSKCMFL 238 (778)
Q Consensus 224 lp~L~~LdLS~~~i~ 238 (778)
+++|+.|++++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 456777777777766
No 135
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=55.19 E-value=9.4 Score=24.54 Aligned_cols=15 Identities=33% Similarity=0.580 Sum_probs=10.3
Q ss_pred CCCCCeEeccCcccc
Q psy17257 224 MPHLTHLNLSKCMFL 238 (778)
Q Consensus 224 lp~L~~LdLS~~~i~ 238 (778)
+++|+.|++++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 456777777777766
No 136
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=54.25 E-value=3.9e+02 Score=30.74 Aligned_cols=150 Identities=23% Similarity=0.362 Sum_probs=93.6
Q ss_pred HHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccC
Q psy17257 584 EVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSK 663 (778)
Q Consensus 584 ~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~ 663 (778)
+.++..+.+++++.. .+. -++-+.+.+... .+.+++..+...++.+++.-.- ..+.+++.+.+++...
T Consensus 322 ~~~l~lL~~l~~~~n--~~~-----Il~eL~~~l~~~-~d~~~~~~~i~~I~~la~~~~~----~~~~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 322 KKALDLLYKLANESN--VKE-----ILDELLKYLSEL-SDPDFRRELIKAIGDLAEKFPP----DAEWYVDTLLKLLEIS 389 (526)
T ss_dssp HHHHHHHHHH--HHH--HHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGS----SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhcccccc--hhh-----HHHHHHHHHHhc-cchhhhhhHHHHHHHHHhccCc----hHHHHHHHHHHhhhhc
Confidence 446777888886544 233 344455555333 2666888999999999877632 2367899999999873
Q ss_pred CCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCc-cce-----ecccch-------hhHHhh-
Q psy17257 664 SDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE-RNI-----NYRSFE-------PIIQLL- 729 (778)
Q Consensus 664 ~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~-~~v-----~yrsf~-------p~~~ll- 729 (778)
+-.+...+...+..++...| ..|+.+++.|...+..-+.++- +.+ -|=... -+++.+
T Consensus 390 --~~~~~~~~~~~i~~ll~~~~-------~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~ 460 (526)
T PF01602_consen 390 --GDYVSNEIINVIRDLLSNNP-------ELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLI 460 (526)
T ss_dssp --GGGCHCHHHHHHHHHHHHST-------TTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHH
T ss_pred --cccccchHHHHHHHHhhcCh-------hhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHH
Confidence 45678888888888887532 3467788889888888333321 111 121111 222222
Q ss_pred ccC--CCchhhHHHHHHHHHhcccCCc
Q psy17257 730 RVY--HTPECQHWSVWALANLTKVYPE 754 (778)
Q Consensus 730 ~~~--~~~~~q~wa~wa~~~~~~~~~~ 754 (778)
+.| ..+.++.+++=|+.-+-.++|.
T Consensus 461 ~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 461 ENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 222 5677999999999888888874
No 137
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=54.21 E-value=40 Score=32.65 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhh
Q psy17257 561 GVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNV 637 (778)
Q Consensus 561 ~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~ni 637 (778)
.|++++...+..... -..+++-+++.|=+++-.+|.-...--++=-++-++.+|+. .++++|++.+.|+|-.
T Consensus 58 ~FI~Kia~~Vn~~~~---d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 58 SFIKKIASYVNSSAM---DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHHHHHHHccccc---cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 356666666664332 25666788888888888888877777788888999999998 6889999999888754
No 138
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.85 E-value=8.5 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=11.1
Q ss_pred CCCCCeEeccCcccc
Q psy17257 224 MPHLTHLNLSKCMFL 238 (778)
Q Consensus 224 lp~L~~LdLS~~~i~ 238 (778)
+.+|+.|++++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357778888887776
No 139
>KOG4535|consensus
Probab=52.26 E-value=2.3e+02 Score=32.43 Aligned_cols=81 Identities=14% Similarity=0.299 Sum_probs=45.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh-hhh----cccchhHHHHHHHhhccCCCCchhhHHHHHH
Q psy17257 602 ARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS-LRP----KLMTSKFIEVFANLVSSKSDGIEVSYNAAGV 676 (778)
Q Consensus 602 ~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~-l~~----~l~~~~~i~~~~~ll~~~~~~~evsy~a~gi 676 (778)
++|+-..-....-.+.+.-.+.+.+..+...-|||...|-. +.+ .+|+.+-+.....-+-. -..-|.+|||=+
T Consensus 476 eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~--~~~kV~WNaCya 553 (728)
T KOG4535|consen 476 ERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE--AAMKVRWNACYA 553 (728)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc--cccccchHHHHH
Confidence 44544433333333444444566677788888888876633 222 23333322222111111 256799999999
Q ss_pred HHHHhccC
Q psy17257 677 LSHIASDG 684 (778)
Q Consensus 677 lahl~~~~ 684 (778)
+.+|.+..
T Consensus 554 ~gNLfkn~ 561 (728)
T KOG4535|consen 554 MGNLFKNP 561 (728)
T ss_pred HHHhhcCc
Confidence 99999863
No 140
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=50.93 E-value=16 Score=25.76 Aligned_cols=31 Identities=26% Similarity=0.496 Sum_probs=25.8
Q ss_pred cccchhhHHhhccCCCchhhHHHHHHHHHhcc
Q psy17257 719 YRSFEPIIQLLRVYHTPECQHWSVWALANLTK 750 (778)
Q Consensus 719 yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~ 750 (778)
.--..|+.+||+ ...+.+|.=|+||+.|++.
T Consensus 11 ~g~i~~L~~ll~-~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 11 AGGLPALVELLK-SEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcC
Confidence 335688999998 5579999999999999874
No 141
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=50.42 E-value=2.8e+02 Score=31.49 Aligned_cols=127 Identities=10% Similarity=0.094 Sum_probs=92.2
Q ss_pred cHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHH
Q psy17257 623 KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKM 702 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~ 702 (778)
....+.-.+..|.++.-+++.|....+.+.+..+..+|+....++...|.+.=++=-|.++++ .. +
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~---~~---------~-- 222 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH---AA---------E-- 222 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH---HH---------H--
Confidence 455565666888999999999988888889999999998766689999999888766666432 00 1
Q ss_pred HHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccC-----CccccchhhhhchHHHHHHHhhc
Q psy17257 703 VEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVY-----PEKYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 703 ~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~-----~~~y~~~~~~e~g~~~l~~~~~~ 775 (778)
.+..|+-+..+..+++...-.-+--=|+=++.|+.+++ ..-|+..++.-|...+++.|...
T Consensus 223 ------------~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 223 ------------VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred ------------hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 01224444555666666666666667788888888865 23588899988999999888754
No 142
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=49.98 E-value=68 Score=33.24 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=49.1
Q ss_pred CCcccccc-HHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHH
Q psy17257 500 IPQDVQFD-YDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRI 574 (778)
Q Consensus 500 il~~~~f~-~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~ 574 (778)
|+.+.||. .+|++..+.++++..+ | +....+|+.+++.++.- ++.-...++ +.+.|..++..|.+..
T Consensus 161 iLaTpp~sRlE~l~~~L~r~l~~~e-~------~v~REfAvvlL~~La~~-~~~~~r~iA~q~~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 161 ILATPPFSRLERLFHTLVRLLGMRE-D------QVCREFAVVLLSNLAQG-DEAAARAIAMQKPCISHLIAFIEDAE 229 (257)
T ss_pred eeeCCCHHHHHHHHHHHHHHhcccc-c------hhHHHHHHHHHHHHhcc-cHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 46788997 5999999999999887 6 88999999999988655 444333444 3445666666665553
No 143
>PHA00679 hypothetical protein
Probab=47.85 E-value=13 Score=28.72 Aligned_cols=38 Identities=37% Similarity=0.515 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccC
Q psy17257 669 VSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERW 709 (778)
Q Consensus 669 vsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w 709 (778)
.+|.|||||--++-- .|..+--+||.|+--+..--..|
T Consensus 6 ltylaagvllglavl---pwkqrlgsregvllwllawacfw 43 (71)
T PHA00679 6 LTYLAAGVLLGLAVL---PWKQRLGSREGVLLWLLAWACFW 43 (71)
T ss_pred HHHHHHHHHHHHHHh---hHHHHhCcchhHHHHHHHHHHHH
Confidence 579999999999874 49988889998876554433334
No 144
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=45.62 E-value=48 Score=32.04 Aligned_cols=137 Identities=14% Similarity=0.171 Sum_probs=86.2
Q ss_pred cCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCC
Q psy17257 607 NGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE 686 (778)
Q Consensus 607 ~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~ 686 (778)
.+++++++..|..++..+++...++-++.-+- +..++-..+.+-+.|..++... +.+ +|-.|--..-..+-|
T Consensus 2 ~~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~~i~~~~~~~--~~d-~~i~~~~~l~~lfp~-- 73 (157)
T PF11701_consen 2 SDELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEKISDFIESLLDEG--EMD-SLIIAFSALTALFPG-- 73 (157)
T ss_dssp CCCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCH--HCC-HHHHHHHHHHHHCTT--
T ss_pred hHHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHccc--cch-hHHHHHHHHHHHhCC--
Confidence 35678888999887778888877766666652 3333233333344444444432 233 443332222233434
Q ss_pred cccccc--ccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhc
Q psy17257 687 AWTIRY--PAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEG 764 (778)
Q Consensus 687 ~w~~~~--~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~ 764 (778)
.|.++. ..++.+++.|...+. +.+..+.+|.+|+=++-+-|. ++=|+--+.+.
T Consensus 74 ~~dv~~~l~~~eg~~~~l~~~~~----------------------~~~~~~~~~~~~lell~aAc~---d~~~r~~I~~~ 128 (157)
T PF11701_consen 74 PPDVGSELFLSEGFLESLLPLAS----------------------RKSKDRKVQKAALELLSAACI---DKSCRTFISKN 128 (157)
T ss_dssp THHHHHHHCCTTTHHHHHHHHHH-----------------------CTS-HHHHHHHHHHHHHHTT---SHHHHHCCHHH
T ss_pred CHHHHHHHHhhhhHHHHHHHHHh----------------------cccCCHHHHHHHHHHHHHHHc---cHHHHHHHHHH
Confidence 465542 356666666655544 456778899999999999999 46788999999
Q ss_pred hHHHHHHHhhcc
Q psy17257 765 GIELLQNLLDNE 776 (778)
Q Consensus 765 g~~~l~~~~~~~ 776 (778)
|++.|+++..+.
T Consensus 129 ~~~~L~~~~~~~ 140 (157)
T PF11701_consen 129 YVSWLKELYKNS 140 (157)
T ss_dssp CHHHHHHHTTTC
T ss_pred HHHHHHHHHccc
Confidence 999999998543
No 145
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.92 E-value=2.5e+02 Score=28.96 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=69.4
Q ss_pred CcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHH
Q psy17257 622 EKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAK 701 (778)
Q Consensus 622 ~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~ 701 (778)
.+++++...|..|...+-.+ . ...+-+++.+..|... ++.+..|++-+.++-+.+.++..+ +.-..++..
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~--~~~~~~~~~~rLl~~lw~~~~r~f----~~L~~~L~~ 82 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQ--GSLELRYVALRLLTLLWKANDRHF----PFLQPLLLL 82 (234)
T ss_pred CChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHhCchHH----HHHHHHHHH
Confidence 47888999998888888555 1 4556678888888877 578889999999999987665444 223344444
Q ss_pred HHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCc
Q psy17257 702 MVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE 754 (778)
Q Consensus 702 ~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~ 754 (778)
....+.....+..+ ..+++.=..++++-+|+.+|+
T Consensus 83 ~~~r~~~~~~~~~~------------------~~~~~i~~a~s~~~ic~~~p~ 117 (234)
T PF12530_consen 83 LILRIPSSFSSKDE------------------FWECLISIAASIRDICCSRPD 117 (234)
T ss_pred HHhhcccccCCCcc------------------hHHHHHHHHHHHHHHHHhChh
Confidence 44444444443322 223444456788888888887
No 146
>KOG4500|consensus
Probab=44.75 E-value=58 Score=36.44 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=134.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcH-----H
Q psy17257 551 NAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKD-----E 625 (778)
Q Consensus 551 ~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~-----~ 625 (778)
+-++..+-+..+....++.+++-...+ ...+.+=+..+|=|+--.+.++--.|.+.||-.+.+++|+-|-.++ +
T Consensus 73 ev~r~~F~~~~I~a~~le~Lrq~psS~-d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~ 151 (604)
T KOG4500|consen 73 EVERSLFRNYCIDAEALELLRQTPSSP-DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEE 151 (604)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCC-cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHH
Confidence 334555556666688888888887765 2345566888899988777888889999999999999999875443 3
Q ss_pred HHHHHHhhh-hhhhhhhhhhhcccchhHHHHHHHhhccCCCCc-------------------------------------
Q psy17257 626 LLRNMMGLL-GNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGI------------------------------------- 667 (778)
Q Consensus 626 l~~~~lgll-~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~------------------------------------- 667 (778)
.-..--|+| |.+-+-++||.++|+-..+..+...+.=...+.
T Consensus 152 ~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~l 231 (604)
T KOG4500|consen 152 YSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQL 231 (604)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHH
Confidence 444455555 446677889999997766665544432110111
Q ss_pred -------hhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC--ccceecc---------------c--
Q psy17257 668 -------EVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS--ERNINYR---------------S-- 721 (778)
Q Consensus 668 -------evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~--~~~v~yr---------------s-- 721 (778)
++.-...-|+|-.+-... -.+ ....+-+++.+++-+++.+..+ ++|+|-- |
T Consensus 232 l~~~v~~d~~eM~feila~~aend~--Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq 308 (604)
T KOG4500|consen 232 LPSMVREDIDEMIFEILAKAAENDL--VKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ 308 (604)
T ss_pred HHHhhccchhhHHHHHHHHHhcCcc--eee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHH
Confidence 122222334444443221 111 1233446666777777766554 4443210 1
Q ss_pred ---chh-hH-HhhccCC--CchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhc
Q psy17257 722 ---FEP-II-QLLRVYH--TPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 722 ---f~p-~~-~ll~~~~--~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~ 775 (778)
=.| || .++.++. --..|.=++.||.|.... +--|-.+++.|-+.-|-++...
T Consensus 309 ~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~--D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 309 KLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR--DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHH
Confidence 134 33 2333333 335566789999999885 5678888888888777666543
No 147
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=44.38 E-value=31 Score=31.29 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=42.9
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|+.+.+... + .. .-...+.++++|+.+++..+ +. .+ ..+..+ .+|+.+.+.+ ....-....+.
T Consensus 9 ~~~~~l~~i~~~~~-~-~~-I~~~~F~~~~~l~~i~~~~~-~~----~i~~~~F~~~-~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 9 YNCSNLESITFPNT-I-KK-IGENAFSNCTSLKSINFPNN-LT----SIGDNAFSNC-KSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TT-TT--EEEETST----E-E-TTTTTT-TT-SEEEESST-TS----CE-TTTTTT--TT-EEEEETS-TT-EE-TTTTT
T ss_pred hCCCCCCEEEECCC-e-eE-eChhhccccccccccccccc-cc----ccceeeeecc-cccccccccc-ccccccccccc
Confidence 77888999988743 3 21 11225667888999998875 43 22 235555 5788888865 32221223455
Q ss_pred CCCCccEEeccCC
Q psy17257 274 SLPLLRRLDISVS 286 (778)
Q Consensus 274 ~L~~L~~LdLS~~ 286 (778)
.+++|+.+++..+
T Consensus 79 ~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 79 NCTNLKNIDIPSN 91 (129)
T ss_dssp T-TTECEEEETTT
T ss_pred ccccccccccCcc
Confidence 6888888888654
No 148
>KOG2122|consensus
Probab=41.21 E-value=3.1e+02 Score=35.87 Aligned_cols=177 Identities=18% Similarity=0.174 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHH--HHHHHHhcCCCchhhhhhHHhhhccCc
Q psy17257 423 EHALVVVLEALDTHLT-ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIIT--TILNGMHMHLEDDTMMRNGCLTLCQFK 499 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~-~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~--~LL~am~~~~~~~~l~~n~~l~l~~~~ 499 (778)
..||.+.++.|--... +......+.+-|++|+...-- ....|+.+. .+|+-+..|
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD----~kr~RRE~kvL~lLeQIraY------------------ 291 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD----EKRGRREKKVLHLLEQIRAY------------------ 291 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc----hhhhHHHHHHHHHHHHHHHH------------------
Confidence 4577777765544333 456667778888888765322 222222222 233322222
Q ss_pred CCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHH---HHHhhhhhhHHHHHHHHHHHHhh
Q psy17257 500 IPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAH---KILLGRLGVIKKMLRLIKDRIEK 576 (778)
Q Consensus 500 il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~---~~~l~~~~~~~~ll~~i~~~~~~ 576 (778)
|+..-.|+..+.. +.-..+.=.+++-+++..+-.-+++|. +..||-+..|..|++........
T Consensus 292 ------------C~~~~~~lqar~~--~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp 357 (2195)
T KOG2122|consen 292 ------------CETCWTWLQARGP--AIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGP 357 (2195)
T ss_pred ------------HHHHHHHHHhcCC--CCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 3333334443321 001112223454555555555555653 44667777777777766655541
Q ss_pred ---h-ccchhHHHHHHHHHhcc--cccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhh
Q psy17257 577 ---Q-RCDDILEVAWSAMWNVT--DETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638 (778)
Q Consensus 577 ---~-~~d~~l~~~~s~lwn~t--de~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~nia 638 (778)
+ .|...=+.+..||-|+| |+...+ +.-=..|.|+.++.-|..- -++|++.+-|+|.|+.
T Consensus 358 ~tnd~~~~aLRrYa~MALTNLTFGDv~NKa-~LCs~rgfMeavVAQL~s~--peeL~QV~AsvLRNLS 422 (2195)
T KOG2122|consen 358 ETNDGECNALRRYAGMALTNLTFGDVANKA-TLCSQRGFMEAVVAQLISA--PEELLQVYASVLRNLS 422 (2195)
T ss_pred CCCcHHHHHHHHHHHHHhhccccccccchh-hhhhhhhHHHHHHHHHhcC--hHHHHHHHHHHHHhcc
Confidence 2 23333388999999977 554332 1112346667777767643 2478888888888874
No 149
>KOG1048|consensus
Probab=40.71 E-value=2.5e+02 Score=33.87 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=84.2
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcccccHHHHHHHHhcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEK-QRCDDILEVAWSAMWNVTDETAINCARFLNNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~-~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~ 610 (778)
+.+.+-+...+..++-- ..-++.+| ...|++++..+...-.. ...++++.-...++|||+-+++++-+..++.+|+
T Consensus 580 ~~vv~s~a~~LrNls~d--~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~ 656 (717)
T KOG1048|consen 580 SDVVRSAAGALRNLSRD--IRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGI 656 (717)
T ss_pred chHHHHHHHHHhhhccC--chhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccCh
Confidence 44444444444333322 33455556 45577777777665542 3568889999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhH
Q psy17257 611 ELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKF 652 (778)
Q Consensus 611 ~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~ 652 (778)
+-++-..+.+ ..+...+..=.+|.++---+|||..+-.+-|
T Consensus 657 ~kL~~I~~s~-~S~k~~kaAs~vL~~lW~y~eLh~~~kk~g~ 697 (717)
T KOG1048|consen 657 PKLRLISKSQ-HSPKEFKAASSVLDVLWQYKELHFKLKKKGF 697 (717)
T ss_pred HHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHhhhHhhhhh
Confidence 9999988885 4666677777777888888888876665554
No 150
>KOG1062|consensus
Probab=39.47 E-value=8e+02 Score=30.04 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccccccCChHHHHHHHHHHHHh--hccccchhHHHHHHHHHHHhcC
Q psy17257 404 QQVLNDLYHIFRYDTCVDIEHALVVVLEALDT--HLTERHIQISGSANLFYIVKMK 457 (778)
Q Consensus 404 ~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~--h~~~~~vq~~gsacL~~L~~~~ 457 (778)
+||.-..+++.+. .|+.++..+.+-+. +.++..|-++|..-++.+|+..
T Consensus 160 KKA~Lca~r~irK-----~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 160 KKAALCAVRFIRK-----VPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HHHHHHHHHHHHc-----CchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 3455555665542 24444444444333 4455668888888888888874
No 151
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=39.46 E-value=64 Score=26.43 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=41.8
Q ss_pred hhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccc---------cccccHHHHHHHHHHHh
Q psy17257 650 SKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWT---------IRYPAREKVLAKMVEAI 706 (778)
Q Consensus 650 ~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~---------~~~~~r~~~~~~~~~~i 706 (778)
++|......++.+.+...++.++||-+|-+.+... |. +.+..|+.|=+.+...+
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~---W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN---WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS---GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc---CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 68899999999776678999999999999999854 88 34556666666555543
No 152
>KOG4242|consensus
Probab=38.79 E-value=96 Score=35.29 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.9
Q ss_pred HhcCCCCCEEeecCCCCCCCcc
Q psy17257 307 IFKLPHLVSLDISGTNLAGRGV 328 (778)
Q Consensus 307 ~~~lp~L~~LDLSgn~l~~~~~ 328 (778)
...-+.|..||++||....-+.
T Consensus 436 l~stqtl~kldisgn~mgd~ga 457 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGA 457 (553)
T ss_pred hccCcccccccccCCCcccCCC
Confidence 4567889999999998765443
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=38.69 E-value=30 Score=36.78 Aligned_cols=116 Identities=16% Similarity=0.298 Sum_probs=71.7
Q ss_pred cCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCC----Cchh-hHHHHHHHHHHh
Q psy17257 607 NGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSD----GIEV-SYNAAGVLSHIA 681 (778)
Q Consensus 607 ~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~----~~ev-sy~a~gilahl~ 681 (778)
.++++.+.++++-|..+. -.......+.++|.+.-...+. ++-++.|.+....... ...+ .|+...||.||+
T Consensus 132 e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 132 EKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 456888888999887555 4455667777788774422211 4446667666654321 1122 576667889998
Q ss_pred ccC-CCc------cccc----cccHH-HHHHHHHHHhccCCCCC-ccce-ecccchhh
Q psy17257 682 SDG-PEA------WTIR----YPARE-KVLAKMVEAIERWPIDS-ERNI-NYRSFEPI 725 (778)
Q Consensus 682 ~~~-~~~------w~~~----~~~r~-~~~~~~~~~i~~w~~~~-~~~v-~yrsf~p~ 725 (778)
.+. ..+ |... ..+|| .+++.|++|++.++... .+.| .|.|+.++
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 832 222 2211 23888 89999999999999987 4445 68887775
No 154
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=38.57 E-value=3.6e+02 Score=29.32 Aligned_cols=179 Identities=16% Similarity=0.279 Sum_probs=101.2
Q ss_pred HHhccCCHHHHHHhhhh-hhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCC
Q psy17257 544 SLACQVDNAHKILLGRL-GVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE 622 (778)
Q Consensus 544 ~l~~~~s~~~~~~l~~~-~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~ 622 (778)
+..--.+++=...+.|. ..+++++++|+.++.+++ .+.+.+++-|+-|.+|.- .
T Consensus 217 iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV----~Rlc~~Iv~n~~dK~pK~---~------------------ 271 (432)
T COG5231 217 IWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKV----LRLCCGIVANVLDKSPKG---Y------------------ 271 (432)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccccc---h------------------
Confidence 33333455544455554 779999999999998865 477778899999888731 1
Q ss_pred cHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHH
Q psy17257 623 KDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAK 701 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~ 701 (778)
-+-++++|||.-. +-|..+=-.++-++.-.+-++| .++-+|- .-.+++.-+.+
T Consensus 272 -----I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s---~l~~~~k------------------~l~~fD~Y~~E 325 (432)
T COG5231 272 -----IFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRS---RLVQNTK------------------KLCIFDNYLNE 325 (432)
T ss_pred -----hhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHH---HHHhhhh------------------hhhHHHHHHHH
Confidence 1224556655432 3333221111112111111222 0111111 11234444455
Q ss_pred HHHHhccCCCCCccc----------e--ecccchhhHHhhccCCCchhhHHHHHH---HHHhcccCCccccchhhhhchH
Q psy17257 702 MVEAIERWPIDSERN----------I--NYRSFEPIIQLLRVYHTPECQHWSVWA---LANLTKVYPEKYCQVVEAEGGI 766 (778)
Q Consensus 702 ~~~~i~~w~~~~~~~----------v--~yrsf~p~~~ll~~~~~~~~q~wa~wa---~~~~~~~~~~~y~~~~~~e~g~ 766 (778)
|-+-+..|.++.... + ||-=|+-.+.+|+ +..|. -|..-| |-|+..-+|+- -..|.+-||-
T Consensus 326 Ldsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~n--t~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k 401 (432)
T COG5231 326 LDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPN--TWICVACSDIFQLVRASPEI-NAVLSKYGVK 401 (432)
T ss_pred HhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCC--ceEeeeHhhHHHHHHhCchH-HHHHHHhhhH
Confidence 555555555554322 2 7887777778777 44444 454444 44556667764 3678899999
Q ss_pred HHHHHHhhccC
Q psy17257 767 ELLQNLLDNEN 777 (778)
Q Consensus 767 ~~l~~~~~~~~ 777 (778)
+.+-++.+||+
T Consensus 402 ~~im~L~nh~d 412 (432)
T COG5231 402 EIIMNLINHDD 412 (432)
T ss_pred HHHHHHhcCCC
Confidence 99999999986
No 155
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.45 E-value=5.5e+02 Score=30.25 Aligned_cols=134 Identities=17% Similarity=0.099 Sum_probs=76.3
Q ss_pred hHHHHHHHhhCCCc-HHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCch-----hhHHHHHHHHHHhcc
Q psy17257 610 MELFLNCLQYFPEK-DELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIE-----VSYNAAGVLSHIASD 683 (778)
Q Consensus 610 ~~~~~~~l~~f~~~-~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~e-----vsy~a~gilahl~~~ 683 (778)
+..+.+-+++..-. .+..+.++.+++.+... +++.++.|..|+.+....=+ -+..|.|.+.|-...
T Consensus 359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P--------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYP--------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC--------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 44444555544323 34566677777776522 46678899999987422111 246888999998776
Q ss_pred CCCccccccccHHHHHHHHH----HHhccCCCCCccceec----------ccchhhHHhhc-cC-CCchhhHHHHHHHHH
Q psy17257 684 GPEAWTIRYPAREKVLAKMV----EAIERWPIDSERNINY----------RSFEPIIQLLR-VY-HTPECQHWSVWALAN 747 (778)
Q Consensus 684 ~~~~w~~~~~~r~~~~~~~~----~~i~~w~~~~~~~v~y----------rsf~p~~~ll~-~~-~~~~~q~wa~wa~~~ 747 (778)
..+.|. ....+++.+.+. .++.. .++.+.+.| .+...+.+.+. .- ..+.++.=|+||+.+
T Consensus 431 ~~~~~~--~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 431 NTPSCP--DFVLEELLKYLHELLQQAVSK--GDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred CCCCCC--hhhHHHHHHHHHHHHHHHHhc--CCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 554443 222234444444 44432 223333333 23334444454 33 245788899999998
Q ss_pred hcccCCcc
Q psy17257 748 LTKVYPEK 755 (778)
Q Consensus 748 ~~~~~~~~ 755 (778)
+....|++
T Consensus 507 ~a~~~p~~ 514 (574)
T smart00638 507 LAKRDPRK 514 (574)
T ss_pred HHHhCchH
Confidence 88777764
No 156
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=37.28 E-value=1.5e+02 Score=32.88 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=88.7
Q ss_pred hHHHHHHHhhCCCcH-HHH-HHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCc
Q psy17257 610 MELFLNCLQYFPEKD-ELL-RNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEA 687 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~-~l~-~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~ 687 (778)
|+.+++-|+ ++.+ .+. ..++.|....+ -++.|.++-...+++-|.+.+....+..-.+|.+|+|+.-+..|+...
T Consensus 23 v~ylld~l~--~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLE--SSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcc--cCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 556666666 3222 233 22444444333 233444555567777777777554444467888899999999988533
Q ss_pred cccccccHHHHHHHHHH--HhccCCCCCc-------cceecccchhhHHhh---c-----cCCCchhhHHHHHHHHHhcc
Q psy17257 688 WTIRYPAREKVLAKMVE--AIERWPIDSE-------RNINYRSFEPIIQLL---R-----VYHTPECQHWSVWALANLTK 750 (778)
Q Consensus 688 w~~~~~~r~~~~~~~~~--~i~~w~~~~~-------~~v~yrsf~p~~~ll---~-----~~~~~~~q~wa~wa~~~~~~ 750 (778)
=...+..--.++-+|.. +....+.... .++...+..-+..++ + ......+|-+|+-||+.+|.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~ 179 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVR 179 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHH
Confidence 33212221233222222 2112222221 113333444344444 1 12356789999999999961
Q ss_pred -------------cCCccccchhhhhchHHHHHHHhh
Q psy17257 751 -------------VYPEKYCQVVEAEGGIELLQNLLD 774 (778)
Q Consensus 751 -------------~~~~~y~~~~~~e~g~~~l~~~~~ 774 (778)
+..+-|=.=|.+.||++.+-+++.
T Consensus 180 ~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~ 216 (361)
T PF07814_consen 180 SLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILK 216 (361)
T ss_pred HHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHH
Confidence 222455566778899999988875
No 157
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=34.66 E-value=8e+02 Score=30.28 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH-HHHhcCCCchhhhhhHHhhhccCcCC
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTIL-NGMHMHLEDDTMMRNGCLTLCQFKIP 501 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL-~am~~~~~~~~l~~n~~l~l~~~~il 501 (778)
......++..+..|.....++..|+..+..++..............++...++ -+++++-+| -.| =|++++- .
T Consensus 501 ~~q~~~ml~~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNH-viq-Kci~~~~----~ 574 (777)
T COG5099 501 EIQKSIMLSKSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNH-VIQ-KCIEKFN----K 574 (777)
T ss_pred HHHHHHHHHHhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCH-HHH-HHHHhcC----c
Confidence 34446677888888888889999999999987764332212122333333333 245566666 233 3444321 1
Q ss_pred ccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhh--hhHHHHHH------HHHHH
Q psy17257 502 QDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRL--GVIKKMLR------LIKDR 573 (778)
Q Consensus 502 ~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~--~~~~~ll~------~i~~~ 573 (778)
....|=++.+++-..+... .|.+..++..|...=+.++++.+-+. .+++.+.+ .|+..
T Consensus 575 ~~~~fif~~~~~~~~~is~--------------~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvvq~i 640 (777)
T COG5099 575 EKNQFIFDSINENLYDLST--------------HRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVVQHI 640 (777)
T ss_pred cccchHHHHHHhhhHhhhc--------------cccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhhhHH
Confidence 2234445555544433222 23444445455454455554322211 11222221 33333
Q ss_pred HhhhccchhHHHHHHHHH-hcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh--hhhcccch
Q psy17257 574 IEKQRCDDILEVAWSAMW-NVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS--LRPKLMTS 650 (778)
Q Consensus 574 ~~~~~~d~~l~~~~s~lw-n~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~--l~~~l~~~ 650 (778)
++.+.+...=.+.-..+| ++.+-+- ..=|=.++.+|+..-. ++.-..++|-.+.| ...+. --..++++
T Consensus 641 l~~g~~~~k~~i~~~~l~~~v~elS~-------~kfaSnvVeK~i~~~~-~~~~~~ril~~~~~-~~~~~~~~l~~i~~d 711 (777)
T COG5099 641 LDNGAEPNKERIIIKLLSKRVVELST-------HKFASNVVEKCIKYAS-DSFKRSRILNELTN-RGIEKPGFLMLILDD 711 (777)
T ss_pred hhcCCCcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCC-cchHHHHHHHHHhc-ccccCChHHHHHHHh
Confidence 443333332233334456 3333322 2334456667777554 44435677777777 22222 12334455
Q ss_pred hHHHHHHHhhccCCCCchhhHHHHHHHHHHhcc
Q psy17257 651 KFIEVFANLVSSKSDGIEVSYNAAGVLSHIASD 683 (778)
Q Consensus 651 ~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~ 683 (778)
.|-..+...+-..++.++....+--|-.|+-+.
T Consensus 712 ~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l 744 (777)
T COG5099 712 QYANYVIQYLLDVSPEIQRSLLARAIKKVIPSL 744 (777)
T ss_pred hhcchHHHHHHhhCchhhHHHHHHHHHHHHHHH
Confidence 555555555444446777777776677776653
No 158
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=34.47 E-value=3.2e+02 Score=27.44 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHhh-hccchhHHHHHHHHHhcccccHHHHHHHHhcCChHH-HHHHHhhCCC-cHHHH-HHHHhhhhh
Q psy17257 561 GVIKKMLRLIKDRIEK-QRCDDILEVAWSAMWNVTDETAINCARFLNNGGMEL-FLNCLQYFPE-KDELL-RNMMGLLGN 636 (778)
Q Consensus 561 ~~~~~ll~~i~~~~~~-~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~-~~~~l~~f~~-~~~l~-~~~lgll~n 636 (778)
.++.++++..-+-... -.-+.-..+.-+++-|+|- .|+- ++|+-...-.. .++-|--|-+ .+.+. .-|.|.+.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~g-R~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEG-RQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHH-HHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 4456666655441111 1125666777778999994 3544 44444443333 3343333433 33344 339999999
Q ss_pred hhhhhhhhhcccchhH
Q psy17257 637 VAEVKSLRPKLMTSKF 652 (778)
Q Consensus 637 iaev~~l~~~l~~~~~ 652 (778)
...-.+.++.|+.++-
T Consensus 130 ccFd~~~H~~LL~~~~ 145 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDE 145 (192)
T ss_pred hhccHhHHHHhcCchh
Confidence 9999988887777653
No 159
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=33.75 E-value=34 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=17.9
Q ss_pred CccEEEecCCcccChhHHHHHhccCC
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMP 225 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp 225 (778)
+|++|.|.+..+..+..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 47888888887723336777777776
No 160
>KOG1991|consensus
Probab=33.23 E-value=1.1e+03 Score=29.69 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=103.2
Q ss_pred cccCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhh
Q psy17257 417 DTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRP-VLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTL 495 (778)
Q Consensus 417 ~~~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~-~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l 495 (778)
.......++++++..+|.+ ....+|++.+.-.|.-+....-.. ..-.+....+...||+-+..+-++. .-||..++
T Consensus 495 ~d~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~--Lt~vme~i 571 (1010)
T KOG1991|consen 495 KDPNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD--LTNVMEKI 571 (1010)
T ss_pred CChHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH--HHHHHHHH
Confidence 3344569999999999998 667788888887777776654432 1122235556777888777666544 22333322
Q ss_pred ccCcCCcc-ccccHHHHHHHHHHH---HhhhcccCCCCCCchhHHHHHHHHHHHhccC-CHHH-HHHhhhh-hhHHHHHH
Q psy17257 496 CQFKIPQD-VQFDYDRLVRILLHI---ITEMEHESNSNGSNFVLRIAIYLLNSLACQV-DNAH-KILLGRL-GVIKKMLR 568 (778)
Q Consensus 496 ~~~~il~~-~~f~~~~~~~~~l~~---~~~~~~d~~~~~~~~~~~~av~il~~l~~~~-s~~~-~~~l~~~-~~~~~ll~ 568 (778)
.. ++.++ .||..+-+-.+|..+ +...+ |+..-+ .-=+-+|+.+++.+-+-+ |-++ .+-++.. ..+..++.
T Consensus 572 V~-~fseElsPfA~eL~q~La~~F~k~l~~~~-~~~~~~-ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~ 648 (1010)
T KOG1991|consen 572 VC-KFSEELSPFAVELCQNLAETFLKVLQTSE-DEDESD-DDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIG 648 (1010)
T ss_pred HH-HHHHhhchhHHHHHHHHHHHHHHHHhccC-CCCccc-hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 11 12222 377665554444433 33211 100001 112223445555444333 2222 2233432 34455555
Q ss_pred HHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh
Q psy17257 569 LIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV 640 (778)
Q Consensus 569 ~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev 640 (778)
.|-+.--.+.++.+++++-+...-.-+=+|.- =+=++++++|+... .-+--+.||-+|.|+.-+
T Consensus 649 ~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m------W~ll~li~e~~~~~--~~dyf~d~~~~l~N~vt~ 712 (1010)
T KOG1991|consen 649 FILKNDITDFYEELLEIVSSLTFLSKEISPIM------WGLLELILEVFQDD--GIDYFTDMMPALHNYVTY 712 (1010)
T ss_pred HHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH------HHHHHHHHHHHhhh--hHHHHHHHHHHHhhheee
Confidence 44444444556666666444333333333421 11123344444422 122336677777777655
No 161
>KOG0212|consensus
Probab=31.95 E-value=8.9e+02 Score=28.48 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=102.9
Q ss_pred chhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCC-----chhhhhhHHhhhccCcCCccccccHHHHHHHH
Q psy17257 441 HIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLE-----DDTMMRNGCLTLCQFKIPQDVQFDYDRLVRIL 515 (778)
Q Consensus 441 ~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~-----~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~ 515 (778)
.+|..|..=+++.++-.-. --..-...+...+|..+..-++ ..++..+-.+.+++.+-..+- |||..+.+.+
T Consensus 265 ~iq~~al~Wi~efV~i~g~--~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl 341 (675)
T KOG0212|consen 265 EIQLKALTWIQEFVKIPGR--DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHhcCCCc--chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHH
Confidence 3555554444444433211 1223344555566666655443 234566667888888666433 9999999999
Q ss_pred HHHHhhhcccCCCCCCchhHHHHH-HHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Q psy17257 516 LHIITEMEHESNSNGSNFVLRIAI-YLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNV 593 (778)
Q Consensus 516 l~~~~~~~~d~~~~~~~~~~~~av-~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~ 593 (778)
.+++.....+ -|+|+ .-+.-+-.++.++ .+. ...+...+|..+.++ .|.++..+++.+-++
T Consensus 342 ~~~l~~~~~~---------tri~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLsd~-----sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 342 TKYLSDDREE---------TRIAVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLSDR-----SDEVVLLALSLLASI 404 (675)
T ss_pred HHHhhcchHH---------HHHHHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhcCc-----hhHHHHHHHHHHHHH
Confidence 9998854311 23433 2222233333322 122 223445555544443 378888888888886
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhcc
Q psy17257 594 TDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSS 662 (778)
Q Consensus 594 tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~ 662 (778)
......- +-......-|+.|.++. +.+.--||.. ++.|-..|--+...+.|+..|.-
T Consensus 405 ~~s~~~~-------~~~~fl~sLL~~f~e~~----~~l~~Rg~lI-IRqlC~lL~aE~IYr~~a~ILe~ 461 (675)
T KOG0212|consen 405 CSSSNSP-------NLRKFLLSLLEMFKEDT----KLLEVRGNLI-IRQLCLLLNAERIYRSIADILER 461 (675)
T ss_pred hcCcccc-------cHHHHHHHHHHHHhhhh----HHHHhhhhHH-HHHHHHHhCHHHHHHHHHHHHhc
Confidence 5443321 22566667888887644 4444445543 33443334445556667666654
No 162
>KOG1293|consensus
Probab=30.87 E-value=4.4e+02 Score=31.31 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=72.8
Q ss_pred hhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhh
Q psy17257 557 LGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGN 636 (778)
Q Consensus 557 l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~n 636 (778)
+.....+.-|++++. . =.-.+++.+++++-|++-|=..-=..||+.||++.+.+-+.+++ +....+-+-.|.+
T Consensus 415 ~~~~dv~~plvqll~----d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~--~n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLM----D-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD--FNSRANSLWVLRH 487 (678)
T ss_pred CccchhHHHHHHHhh----C-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC--chHHHHHHHHHHH
Confidence 334455666666661 1 11345577888888866554444479999999999999998884 4455555555555
Q ss_pred hhhh-hhhhhcccchhH-HHHHHHhhccCCCCchhhHHHHHHHHHHhccC
Q psy17257 637 VAEV-KSLRPKLMTSKF-IEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 637 iaev-~~l~~~l~~~~~-i~~~~~ll~~~~~~~evsy~a~gilahl~~~~ 684 (778)
+-.- +|-+....-.++ .+.+..+..+ ++.+|.--+.-+|-++..+.
T Consensus 488 l~f~~de~~k~~~~~ki~a~~i~~l~nd--~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 488 LMFNCDEEEKFQLLAKIPANLILDLIND--PDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHhcchHHHHHHHHHHhhHHHHHHHHhC--CCHHHHHHHHHHHHHhhcCc
Confidence 5433 222222222222 2233333344 57889999999999998853
No 163
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=30.33 E-value=2.7e+02 Score=27.09 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCcHHHHHHHHhh-hhhhhhhhh---hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHH
Q psy17257 602 ARFLNNGGMELFLNCLQYFPEKDELLRNMMGL-LGNVAEVKS---LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVL 677 (778)
Q Consensus 602 ~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgl-l~niaev~~---l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gil 677 (778)
..||..+|+.++++.+|.-..-+.-.-++|.. |.-.-|.+| ..=+...+.||.-+.+.......+..|-=-|-+||
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 47999999999999999755300011122222 333333433 22344556778888888776554566666667777
Q ss_pred HHHhccCC
Q psy17257 678 SHIASDGP 685 (778)
Q Consensus 678 ahl~~~~~ 685 (778)
=-++...+
T Consensus 85 Es~Vl~S~ 92 (160)
T PF11841_consen 85 ESIVLNSP 92 (160)
T ss_pred HHHHhCCH
Confidence 66666443
No 164
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=29.61 E-value=79 Score=21.21 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 653 i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
+..|.+++++ +.-+|.+.|+-.|..++.
T Consensus 2 lp~l~~~l~D--~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLND--PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHHHHh
Confidence 5678889988 578999999999988864
No 165
>PRK09687 putative lyase; Provisional
Probab=28.87 E-value=6.4e+02 Score=26.77 Aligned_cols=59 Identities=14% Similarity=0.046 Sum_probs=38.5
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
++.+++.|+. .+..+.......|+.+. .++.+..+..++++ ++-.|..+|+.+|+.|-.
T Consensus 25 ~~~L~~~L~d--~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 25 DDELFRLLDD--HNSLKRISSIRVLQLRG----------GQDVFRLAIELCSS--KNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCC
Confidence 3445555542 34445555555555443 25567777888887 467999999999999854
No 166
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=28.86 E-value=1.1e+02 Score=30.11 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccc
Q psy17257 624 DELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWT 689 (778)
Q Consensus 624 ~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~ 689 (778)
+.+..+++..+|=++--. |.+ -+.+++.+...|++ +...|...|.-+|+||+..|.-.|.
T Consensus 2 ~~vR~n~i~~l~DL~~r~---~~~-ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~~d~ik~k 61 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRY---PNL-VEPYLPNLYKCLRD--EDPLVRKTALLVLSHLILEDMIKVK 61 (178)
T ss_pred HHHHHHHHHHHHHHHHhC---cHH-HHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCceeeh
Confidence 556677777777555221 222 35688899999998 5789999999999999998766665
No 167
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=28.37 E-value=61 Score=36.24 Aligned_cols=22 Identities=36% Similarity=0.830 Sum_probs=19.3
Q ss_pred cHHHHHHHHhcCChHHHHHHHh
Q psy17257 597 TAINCARFLNNGGMELFLNCLQ 618 (778)
Q Consensus 597 ~p~~c~~f~~~~g~~~~~~~l~ 618 (778)
+.+.|+.||+.||++.+++-+.
T Consensus 350 N~~~C~~FVe~GGie~LLdLl~ 371 (379)
T PF06025_consen 350 NSDHCREFVEKGGIELLLDLLT 371 (379)
T ss_pred CHHHHHHHHHcCCHHHHHHHHc
Confidence 4799999999999999998554
No 168
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=28.24 E-value=31 Score=22.73 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=9.0
Q ss_pred CCCCeEeccCcccc
Q psy17257 225 PHLTHLNLSKCMFL 238 (778)
Q Consensus 225 p~L~~LdLS~~~i~ 238 (778)
++|+.|++|+|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35666666666666
No 169
>PTZ00429 beta-adaptin; Provisional
Probab=27.94 E-value=1.2e+03 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=18.1
Q ss_pred hHHhhccCCCchhhHHHHHHHHHhcc
Q psy17257 725 IIQLLRVYHTPECQHWSVWALANLTK 750 (778)
Q Consensus 725 ~~~ll~~~~~~~~q~wa~wa~~~~~~ 750 (778)
+.+.|+ +..|.|.+=|+-++-++..
T Consensus 261 l~~~Lq-~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 261 VLPRMS-HQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHhcC
Confidence 344444 3568999999999888875
No 170
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=27.39 E-value=3.2e+02 Score=32.69 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=83.2
Q ss_pred eEEeCCCCHHHHHHHHHhcCChHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHh
Q psy17257 378 LRVAGDCNEAQLLIAAKAYIDRPEMLQQVLNDLYHIFRYDTCVDIEHALVVVLEALDTHLT--ERHIQISGSANLFYIVK 455 (778)
Q Consensus 378 l~v~g~~~~~qil~al~~y~~R~~~~~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~h~~--~~~vq~~gsacL~~L~~ 455 (778)
....|..+|+.+.+|+.+-.+|+-. | .+.+-+...-.+|.++--+|.+ +..+|.+|+-||+.+-
T Consensus 859 ~~~IggtsEddf~da~~fikE~ElL--------y-----GeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM- 924 (1128)
T COG5098 859 SSRIGGTSEDDFVDAFFFIKEKELL--------Y-----GEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM- 924 (1128)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHh--------h-----chhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-
Confidence 4567788899998888766544321 1 1111122233455566666553 5679999999999872
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcccccc--HHHHHHHHHHHHhhhcccCCCCCCch
Q psy17257 456 MKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFD--YDRLVRILLHIITEMEHESNSNGSNF 533 (778)
Q Consensus 456 ~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~--~~~~~~~~l~~~~~~~~d~~~~~~~~ 533 (778)
=++..--..-.-++...|+.||+ ....-|..+.|-.+ .|-|| .++.-.++.+-+...+ ..
T Consensus 925 -----ClS~~fc~ehlpllIt~mek~p~-P~IR~NaVvglgD~----~vcfN~~~de~t~yLyrrL~De~--------~~ 986 (1128)
T COG5098 925 -----CLSFEFCSEHLPLLITSMEKHPI-PRIRANAVVGLGDF----LVCFNTTADEHTHYLYRRLGDED--------AD 986 (1128)
T ss_pred -----HHhHHHHHHHHHHHHHHHhhCCC-cceeccceeecccc----ceehhhhhHHHHHHHHHHhcchh--------hH
Confidence 12455556667789999999995 33333443333222 12344 3555566666666543 66
Q ss_pred hHHHHHHHHH--HHhccC
Q psy17257 534 VLRIAIYLLN--SLACQV 549 (778)
Q Consensus 534 ~~~~av~il~--~l~~~~ 549 (778)
++|.|.-.+. ++|-|+
T Consensus 987 V~rtclmti~fLilagq~ 1004 (1128)
T COG5098 987 VRRTCLMTIHFLILAGQL 1004 (1128)
T ss_pred HHHHHHHHHHHHHHccce
Confidence 8887776665 445554
No 171
>KOG2025|consensus
Probab=27.30 E-value=1.2e+03 Score=28.34 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHh--hccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCC
Q psy17257 424 HALVVVLEALDT--HLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIP 501 (778)
Q Consensus 424 e~l~lV~~am~~--h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il 501 (778)
+.+..+.++|-. +.+.+.|.+.|.-||-++ ++.+..+.-.+++++...+++=|+++ +-|-+++-+..+ .
T Consensus 122 ~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl------Q~d~~dee~~v~n~l~~liqnDpS~E-VRRaaLsnI~vd--n 192 (892)
T KOG2025|consen 122 DVFNKLNEKLLIRLKDREPNVRIQAVLALSRL------QGDPKDEECPVVNLLKDLIQNDPSDE-VRRAALSNISVD--N 192 (892)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHH------hcCCCCCcccHHHHHHHHHhcCCcHH-HHHHHHHhhccC--c
Confidence 344555555544 667778999999998887 34566677778999999999988544 555555544443 2
Q ss_pred ccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHH--hccCCHHHHHHhhhhhh------HHHHHH--HHH
Q psy17257 502 QDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSL--ACQVDNAHKILLGRLGV------IKKMLR--LIK 571 (778)
Q Consensus 502 ~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l--~~~~s~~~~~~l~~~~~------~~~ll~--~i~ 571 (778)
.+.|+-.+|+-. .+ ..++|++++.|--= .+-+|-++.-++-++|. ++.-++ ++.
T Consensus 193 sTlp~IveRarD----------V~------~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 193 STLPCIVERARD----------VS------GANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred ccchhHHHHhhh----------hh------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 344444444310 01 33344444332100 01112121111111111 111111 111
Q ss_pred --------------HHHhhhccchhHHHHHHHHHh----------------cccccHHH----HHHHHhcCChHHHHHHH
Q psy17257 572 --------------DRIEKQRCDDILEVAWSAMWN----------------VTDETAIN----CARFLNNGGMELFLNCL 617 (778)
Q Consensus 572 --------------~~~~~~~~d~~l~~~~s~lwn----------------~tde~p~~----c~~f~~~~g~~~~~~~l 617 (778)
.+++....+.+...++-|+.. +-|.+|+. |...++..|-+.+..--
T Consensus 257 ~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v~e~v~~~k~f~~~~~~~~t~Eiaf~~~al~l~~~~~e~~e~le 336 (892)
T KOG2025|consen 257 GWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGVREDVGSCKNFDLILVEDLTPEIAFLWCALCLKSKGDEGTEFLE 336 (892)
T ss_pred HHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhcccHHHHHHHHHHHHHhhcchhhHHHH
Confidence 111111122222222333332 34777877 66677788888887777
Q ss_pred hhCCCcHHHHHHHHhhhhhhhhhhhhh
Q psy17257 618 QYFPEKDELLRNMMGLLGNVAEVKSLR 644 (778)
Q Consensus 618 ~~f~~~~~l~~~~lgll~niaev~~l~ 644 (778)
..+|+-..+...|+...--+-+|.+-+
T Consensus 337 ~i~pe~~~~~d~l~~~i~~~~~~e~~~ 363 (892)
T KOG2025|consen 337 LILPEPVVLVDYLLRYIQSVYEVEEES 363 (892)
T ss_pred HhCCCHHHHHHHHHHhhhhHHHHHHhc
Confidence 778877777788888887777776543
No 172
>KOG4242|consensus
Probab=27.24 E-value=75 Score=36.09 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=17.5
Q ss_pred EecCCCCCCCHhHHHHHH--hcCCCCceeecCCCCCC
Q psy17257 114 LELIKCANVSQASLEVLN--MSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 114 LdLs~~~~lt~~~l~~L~--~~~~~L~~L~Ls~c~~~ 148 (778)
|.++.| +.++..+..+. +....|..++|+.+..-
T Consensus 192 l~lr~c-~lsskfis~l~~qsg~~~lteldls~n~~K 227 (553)
T KOG4242|consen 192 LSLRVC-ELSSKFISKLLIQSGRLWLTELDLSTNGGK 227 (553)
T ss_pred cchhhh-hhhhhHHHHhhhhhccccccccccccCCCC
Confidence 344444 34444454332 23345677777777654
No 173
>KOG1241|consensus
Probab=27.20 E-value=1.2e+03 Score=28.42 Aligned_cols=271 Identities=15% Similarity=0.220 Sum_probs=154.8
Q ss_pred HHHHHHHHHhcCChHH----HHHHHHHHHHHhccccc-----cCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhc
Q psy17257 386 EAQLLIAAKAYIDRPE----MLQQVLNDLYHIFRYDT-----CVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKM 456 (778)
Q Consensus 386 ~~qil~al~~y~~R~~----~~~~aL~~L~~l~~~~~-----~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~ 456 (778)
.+.++.|+-+|..+.+ .=..+++.|+.-++... +....=.+++||+|-+. .+..||.++-.||-.|..-
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~--~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS--PDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC--CcHHHHHHHHHHHHHHHHH
Confidence 4567888888874322 22335555555443221 11112245677776543 3467899999999988777
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhcCCCch-hhhh-hHHhhhccCcCC-----c-----cc-c--ccHH-----HHHHHHH
Q psy17257 457 KDRPVLSSLTKRHIITTILNGMHMHLEDD-TMMR-NGCLTLCQFKIP-----Q-----DV-Q--FDYD-----RLVRILL 516 (778)
Q Consensus 457 ~~~~~~~~~~~~~~i~~LL~am~~~~~~~-~l~~-n~~l~l~~~~il-----~-----~~-~--f~~~-----~~~~~~l 516 (778)
.|. .|..-.-+.+-...+.+|. -++++ .+|- --|-|+|-.+|= + .. | +.|- .++=.++
T Consensus 248 yY~-~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll 325 (859)
T KOG1241|consen 248 YYE-FMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL 325 (859)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence 663 3444456677888899998 34343 3553 247788888772 1 11 2 2222 2334677
Q ss_pred HHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhh----ccchhHHHHHHHHHh
Q psy17257 517 HIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQ----RCDDILEVAWSAMWN 592 (778)
Q Consensus 517 ~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~----~~d~~l~~~~s~lwn 592 (778)
+.|++.+.|++--+ .++ .||-..|=.++++ ..+..+|++++..|++.++.. .-..++-| =.
T Consensus 326 ~~L~kqde~~d~Dd-Wnp-~kAAg~CL~l~A~--------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF-----GS 390 (859)
T KOG1241|consen 326 ELLTKQDEDDDDDD-WNP-AKAAGVCLMLFAQ--------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAF-----GS 390 (859)
T ss_pred HHHHhCCCCccccc-CcH-HHHHHHHHHHHHH--------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHH-----Hh
Confidence 77777543322222 444 3666666444443 234468899999999888762 22233333 45
Q ss_pred cccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHH--HHhhhhhhhhhhhhhhcccchhH-HHHHHHhhccCCCCchh
Q psy17257 593 VTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRN--MMGLLGNVAEVKSLRPKLMTSKF-IEVFANLVSSKSDGIEV 669 (778)
Q Consensus 593 ~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~--~lgll~niaev~~l~~~l~~~~~-i~~~~~ll~~~~~~~ev 669 (778)
+-++-...|..-+..+++..++..+. ++.++-+ .=-.+|-|++.-. ..-....+ ...+..++..-.|+-.|
T Consensus 391 Il~gp~~~~Lt~iV~qalp~ii~lm~----D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~DePrv 464 (859)
T KOG1241|consen 391 ILEGPEPDKLTPIVIQALPSIINLMS----DPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLNDEPRV 464 (859)
T ss_pred hhcCCchhhhhHHHhhhhHHHHHHhc----CchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhhCchH
Confidence 66777778888888899888877766 5555533 3334455553311 11111111 22333344444456778
Q ss_pred hHHHHHHHHHHh
Q psy17257 670 SYNAAGVLSHIA 681 (778)
Q Consensus 670 sy~a~gilahl~ 681 (778)
+=|+|+-+-.|+
T Consensus 465 a~N~CWAf~~La 476 (859)
T KOG1241|consen 465 ASNVCWAFISLA 476 (859)
T ss_pred HHHHHHHHHHHH
Confidence 888888776665
No 174
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=27.02 E-value=53 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHhhHH
Q psy17257 9 NEPESLVDQCIRYLLHSVD 27 (778)
Q Consensus 9 ~~p~sL~dlCi~~v~~ni~ 27 (778)
.+|+||+++|-..|-+++.
T Consensus 1 ~~~~sLq~LCR~~Ir~~~~ 19 (39)
T cd03717 1 TSVRSLQHLCRFVIRQCTR 19 (39)
T ss_pred CCCCCHHHHHHHHHHHHcc
Confidence 3799999999999998763
No 175
>KOG4218|consensus
Probab=25.12 E-value=3.8e+02 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHhcccccHHHHHHHHh
Q psy17257 580 DDILEVAWSAMWNVTDETAINCARFLN 606 (778)
Q Consensus 580 d~~l~~~~s~lwn~tde~p~~c~~f~~ 606 (778)
...-+-...+|||.|-.++.+|+.|.-
T Consensus 405 ~~~qe~~naaLldyt~c~yp~~~~kF~ 431 (475)
T KOG4218|consen 405 RRLQEDSNAALLDYTSCCYPNWEQKFP 431 (475)
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHH
Confidence 344455788999999999998887643
No 176
>KOG1832|consensus
Probab=24.81 E-value=1.4e+03 Score=28.46 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=73.5
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHhhCCC------cHHHHHHHHhhhhhhhhhhhhhhcccchh-----HHHHHHHhhcc
Q psy17257 594 TDETAINCARFLNNGGMELFLNCLQYFPE------KDELLRNMMGLLGNVAEVKSLRPKLMTSK-----FIEVFANLVSS 662 (778)
Q Consensus 594 tde~p~~c~~f~~~~g~~~~~~~l~~f~~------~~~l~~~~lgll~niaev~~l~~~l~~~~-----~i~~~~~ll~~ 662 (778)
|.-...+-++|+..+|+..|++....-+. ..++.+-.||.|-=+.-+...|.+|.... ....|.-+|+-
T Consensus 587 ~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~ 666 (1516)
T KOG1832|consen 587 VKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDA 666 (1516)
T ss_pred hhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeec
Confidence 33444667899999999999998765443 34566677777777776777766555332 11222222321
Q ss_pred CC-----CCchhhHHHHHHHHHHhccCCCccccc--------c-c-----------cHHHHHHHHHHHhcc
Q psy17257 663 KS-----DGIEVSYNAAGVLSHIASDGPEAWTIR--------Y-P-----------AREKVLAKMVEAIER 708 (778)
Q Consensus 663 ~~-----~~~evsy~a~gilahl~~~~~~~w~~~--------~-~-----------~r~~~~~~~~~~i~~ 708 (778)
.. ..-|+.--|-|||-+.++-.|+.|... + + .-+.++++|+.+|++
T Consensus 667 a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ 737 (1516)
T KOG1832|consen 667 ANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG 737 (1516)
T ss_pred ccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc
Confidence 10 122455668899999999766888652 1 1 116789999999987
No 177
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=23.69 E-value=2.4e+02 Score=30.57 Aligned_cols=169 Identities=14% Similarity=0.131 Sum_probs=77.1
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCch--hhhhhHHhhhccCcCCccccccHH---HHH
Q psy17257 438 TERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDD--TMMRNGCLTLCQFKIPQDVQFDYD---RLV 512 (778)
Q Consensus 438 ~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~--~l~~n~~l~l~~~~il~~~~f~~~---~~~ 512 (778)
....+..+++-|+...+.+. ..-+.+++.+++. .|++.. .-.-|.+.+|.+ --.+...|-+ .+|
T Consensus 50 ~~f~lR~AA~~c~kay~~~N------~~~q~~~l~~~i~---~~~~~~~~~~~~nl~~~Ll~--~~~~~~~dpy~~wfAa 118 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNN------EEGQTAFLSTLIP---SYASGNSDDPIANLLTALLD--YDSDLSLDPYRCWFAA 118 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-------HHHHHHHHHTTSS---TT--SS--SSSS-HHHHHT--------SS-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcC------HHHHHHHHHHHhc---cCCCCcccchhhHHHHHHHH--hhccccCCHHHHHHHH
Confidence 34556778888888877653 3345556666544 444433 334466666665 2233345544 445
Q ss_pred HHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhh--hhhHHHHHHHHHHHHh----hhccchhHHHH
Q psy17257 513 RILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGR--LGVIKKMLRLIKDRIE----KQRCDDILEVA 586 (778)
Q Consensus 513 ~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~--~~~~~~ll~~i~~~~~----~~~~d~~l~~~ 586 (778)
-++++.+... +.-+.++..|- ..+. .-|+ .-.+.++.+++-..+. .++.-..+.+.
T Consensus 119 ~il~hll~dn---------~~~Ke~al~V~-----~~~~----~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL 180 (312)
T PF04869_consen 119 VILMHLLRDN---------PEAKEQALRVT-----EGDE----SSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLL 180 (312)
T ss_dssp HHHHHHHTT----------HHHHHHHTT-------EE------STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHH
T ss_pred HHHHHHHhcC---------HHHHHHHHccc-----CCCC----CCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 5555555532 22233333330 1111 1121 1223333333333222 22222333333
Q ss_pred HHHHHhcccccHHHHHHHHhcC-ChHHHHHHHhhCCCcHHHHHH-HHhhhhhhhh
Q psy17257 587 WSAMWNVTDETAINCARFLNNG-GMELFLNCLQYFPEKDELLRN-MMGLLGNVAE 639 (778)
Q Consensus 587 ~s~lwn~tde~p~~c~~f~~~~-g~~~~~~~l~~f~~~~~l~~~-~lgll~niae 639 (778)
..-||. +|.+-+.|+.++ .+..+++....-++++.+.+- +--|||-+-|
T Consensus 181 ~~WL~e----~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 181 IVWLFE----CPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHHHTT-----HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC----CHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 333454 999999999997 788888875555555544443 3445666655
No 178
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=23.51 E-value=86 Score=26.16 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=31.2
Q ss_pred ccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhc
Q psy17257 720 RSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 720 rsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~ 775 (778)
++..++..+++ ..-|.++.+|+||+..+- .+..++.|.++..+
T Consensus 31 ~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 31 EAIPALIELLK-DEDPMVRRAAARALGRIG------------DPEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHHT-SSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcC
Confidence 44677888884 688999999999999873 34456666665544
No 179
>KOG2734|consensus
Probab=23.27 E-value=3.3e+02 Score=30.87 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCC
Q psy17257 580 DDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFP 621 (778)
Q Consensus 580 d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~ 621 (778)
-+.++|.=.|+.| |+.-.+|.+|++..|+..++..+-+-|
T Consensus 335 ~SalkvLd~am~g--~~gt~~C~kfVe~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 335 GSALKVLDHAMFG--PEGTPNCNKFVEILGLRTIFPLFMKTP 374 (536)
T ss_pred hhHHHHHHHHHhC--CCchHHHHHHHHHHhHHHHHHHHhhCc
Confidence 3455665445555 666689999999999999998887555
No 180
>KOG0403|consensus
Probab=23.13 E-value=2.4e+02 Score=31.97 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=104.8
Q ss_pred HHHHHhhhh----hhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHH
Q psy17257 552 AHKILLGRL----GVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELL 627 (778)
Q Consensus 552 ~~~~~l~~~----~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~ 627 (778)
.+...||.. -|++.++..--+|.+.. .....|.+|+||--+=.-+.. ..|+-.+++--.-+.-+-.-.
T Consensus 71 ~dl~elg~seyhpyfvkrlvsmamdrhdke--kemasvlls~lyadvi~p~qi------r~gf~~ll~s~ddl~vdipda 142 (645)
T KOG0403|consen 71 SDLKELGSSEYHPYFVKRLVSMAMDRHDKE--KEMASVLLSALYADVIDPDQI------RDGFIRLLESADDLAVDIPDA 142 (645)
T ss_pred HHHHHhccccccHHHHHHHHHHHhhccchH--HHHHHHHHHHHHHHhcChHHH------HHHHHHHHHhcccceecCchH
Confidence 345567733 34777777655555432 456688999999843333322 223333333333332222234
Q ss_pred HHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCch------hhHHHHHHHHHHhc---cCCCccccccccHHHH
Q psy17257 628 RNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIE------VSYNAAGVLSHIAS---DGPEAWTIRYPAREKV 698 (778)
Q Consensus 628 ~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~e------vsy~a~gilahl~~---~~~~~w~~~~~~r~~~ 698 (778)
-+||.+.=-=|.|++.-| +-|+..=..+|-.++.+.+ .||++|--=|.+.+ -|++-||+.+. +..+
T Consensus 143 vnvlalfiaraivddilp----p~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEv-K~kI 217 (645)
T KOG0403|consen 143 VNVLALFIARAIVDDILP----PAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEV-KNKI 217 (645)
T ss_pred HHHHHHHHHHHHHHhccC----hHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHH-HHHH
Confidence 567777766677777655 7888888888876666655 59999976666654 57778886444 4778
Q ss_pred HHHHHHHhccCCCCCccceecccchhhHHhhcc-CCCchhhHHHHHHHHHhcc
Q psy17257 699 LAKMVEAIERWPIDSERNINYRSFEPIIQLLRV-YHTPECQHWSVWALANLTK 750 (778)
Q Consensus 699 ~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~-~~~~~~q~wa~wa~~~~~~ 750 (778)
.+-+++++..=+. |--|+-+-.|=.. ||-.++--=-+-||..-..
T Consensus 218 n~~l~eyv~~get-------rea~rciR~L~vsffhhe~vkralv~ame~~~a 263 (645)
T KOG0403|consen 218 NGNLIEYVEIGET-------REACRCIRELGVSFFHHEGVKRALVDAMEDALA 263 (645)
T ss_pred HHHHHHHHHcccH-------HHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhc
Confidence 8888888876222 3223333333222 3555555555666655443
No 181
>KOG1078|consensus
Probab=21.98 E-value=1.5e+03 Score=27.73 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=67.6
Q ss_pred HHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC-ccceecccchhhHHhhc
Q psy17257 652 FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS-ERNINYRSFEPIIQLLR 730 (778)
Q Consensus 652 ~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~-~~~v~yrsf~p~~~ll~ 730 (778)
-+.+..-++.| +..-..|-|--||.-+|.--|++-+.+..--+.+.-+.-..|-...+.+ -+-.+= .-+-+|.+
T Consensus 283 avs~Lq~flss--p~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e---~sv~rLm~ 357 (865)
T KOG1078|consen 283 AVSVLQLFLSS--PKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTE---SSVDRLMK 357 (865)
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcch---hHHHHHHH
Confidence 57777777877 4667788888999999998888888764432222211111111100000 000000 01111111
Q ss_pred c------CCCchhhHHHHHHHHHhcccCCcccc-------chhhhhchHHHHHHHhh
Q psy17257 731 V------YHTPECQHWSVWALANLTKVYPEKYC-------QVVEAEGGIELLQNLLD 774 (778)
Q Consensus 731 ~------~~~~~~q~wa~wa~~~~~~~~~~~y~-------~~~~~e~g~~~l~~~~~ 774 (778)
. --..+--.=++=|+..+|.++|.|+- +||.+|||++--+++.+
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd 414 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVD 414 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 1 11233333456799999999999985 57899999987776653
No 182
>KOG2213|consensus
Probab=21.73 E-value=8.4e+02 Score=27.34 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=18.0
Q ss_pred cchhHHHHHHHhhccCCCCchhhHHHHHH
Q psy17257 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGV 676 (778)
Q Consensus 648 ~~~~~i~~~~~ll~~~~~~~evsy~a~gi 676 (778)
.+.++++.|.+.+.- -|.|||-|+
T Consensus 209 sD~d~VdRfisCl~~-----AvPfFarga 232 (460)
T KOG2213|consen 209 SDADYVDRFISCLLM-----AVPFFARGA 232 (460)
T ss_pred CChHHHHHHHHHHHH-----hhhhhhcCC
Confidence 468899999988854 566777665
No 183
>KOG0473|consensus
Probab=21.09 E-value=7.1 Score=40.02 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=48.7
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
.....-+.|+++.|.++ . +..-++-++.|..||+|.|.+. -++ -..+. ..++.+.+++|... ..|.+.+.
T Consensus 39 ~~~kr~tvld~~s~r~v-n--~~~n~s~~t~~~rl~~sknq~~----~~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-N--LGKNFSILTRLVRLDLSKNQIK----FLPKDAKQQ-RETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hccceeeeehhhhhHHH-h--hccchHHHHHHHHHhccHhhHh----hChhhHHHH-HHHHHHHhhccchh-hCCccccc
Confidence 55667777777777662 1 2223334566777777777765 222 23344 35555666665543 34555666
Q ss_pred CCCccEEeccCCCC
Q psy17257 275 LPLLRRLDISVSSD 288 (778)
Q Consensus 275 L~~L~~LdLS~~~~ 288 (778)
.+.++++|.-.+.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 77777777766665
No 184
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.84 E-value=1.4e+03 Score=26.93 Aligned_cols=133 Identities=21% Similarity=0.317 Sum_probs=63.7
Q ss_pred hHHHHHHHhhCCC---cHHHHHHHHhhhhhhhhhhhhhhc--ccchhHHHHHHHhhcc----CCCCch----hhHHHHHH
Q psy17257 610 MELFLNCLQYFPE---KDELLRNMMGLLGNVAEVKSLRPK--LMTSKFIEVFANLVSS----KSDGIE----VSYNAAGV 676 (778)
Q Consensus 610 ~~~~~~~l~~f~~---~~~l~~~~lgll~niaev~~l~~~--l~~~~~i~~~~~ll~~----~~~~~e----vsy~a~gi 676 (778)
+++|++.|..++- ...+ ...--|++-|+|--+|-.. --+++.|+.|...+.. -+.++. |+|+.=-|
T Consensus 195 F~l~m~lL~~lk~~~~~~t~-~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kv 273 (556)
T PF05918_consen 195 FELFMSLLKSLKIYGGKQTI-EGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKV 273 (556)
T ss_dssp HHHHHHHHHTSGG---GSSH-HHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccccCCh-HHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHh
Confidence 5566666665543 2212 2222244444444433322 2245667777654432 112344 56655555
Q ss_pred HHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCC-----CchhhH----HHHHHHHH
Q psy17257 677 LSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYH-----TPECQH----WSVWALAN 747 (778)
Q Consensus 677 lahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~-----~~~~q~----wa~wa~~~ 747 (778)
|.++-. +.+..|-++|+.+.+....=...+.+. -+.+++.+|..|- .|.-|+ =.+.|+||
T Consensus 274 lP~l~~-------l~e~~kl~lLk~lAE~s~~~~~~d~~~----~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~ 342 (556)
T PF05918_consen 274 LPKLSD-------LPEDRKLDLLKLLAELSPFCGAQDARQ----LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQ 342 (556)
T ss_dssp CCCTT------------HHHHHHHHHHHHHTT----THHH----HHHHHHHHHHTTS----------HHHHHHHHHHHHH
T ss_pred cCChhh-------CChHHHHHHHHHHHHHcCCCCcccHHH----HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHH
Confidence 544422 133456688888877666544333222 2367778877653 332222 35689999
Q ss_pred hcccCCc
Q psy17257 748 LTKVYPE 754 (778)
Q Consensus 748 ~~~~~~~ 754 (778)
++.+.|+
T Consensus 343 La~k~p~ 349 (556)
T PF05918_consen 343 LARKSPN 349 (556)
T ss_dssp HHTT-TH
T ss_pred HhhhCcc
Confidence 9999997
No 185
>KOG3678|consensus
Probab=20.40 E-value=4.2e+02 Score=30.20 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=97.6
Q ss_pred HHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh--hhhhhcccchhHHHHHHHhhccCCC
Q psy17257 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV--KSLRPKLMTSKFIEVFANLVSSKSD 665 (778)
Q Consensus 588 s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev--~~l~~~l~~~~~i~~~~~ll~~~~~ 665 (778)
+++=+|-.-+.++|.+.++.+|++-.+--.++ .++++.+-.--.|||++-. ++-+.+++.+.--+-+.- |-+.+|
T Consensus 244 ~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rR--t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~-LA~skD 320 (832)
T KOG3678|consen 244 GILEHMFKHSEETCQRLVAAGGLDAVLYWCRR--TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP-LAFSKD 320 (832)
T ss_pred HHHHHHhhhhHHHHHHHHhhcccchheeeccc--CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh-hhcchH
Confidence 33455555678999999999999876554444 3688998888888999854 344445554443322222 233222
Q ss_pred CchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC-ccc-eec---cc---chhhHHhhccCCCchh
Q psy17257 666 GIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS-ERN-INY---RS---FEPIIQLLRVYHTPEC 737 (778)
Q Consensus 666 ~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~-~~~-v~y---rs---f~p~~~ll~~~~~~~~ 737 (778)
+ =..|.||=..|.|++..+ .. .+..|..-+...---+.+-++.. -|. -.| |. .+-+.|+|. +..-++
T Consensus 321 e-l~R~~AClAV~vlat~KE--~E-~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLd-S~R~EA 395 (832)
T KOG3678|consen 321 E-LLRLHACLAVAVLATNKE--VE-REVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLD-SNRLEA 395 (832)
T ss_pred H-HHHHHHHHHHhhhhhhhh--hh-HHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhh-cchhhh
Confidence 2 256889988999998653 11 12223333332222233333221 111 011 11 233667777 555566
Q ss_pred hHHHHHHHHHhc-ccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 738 QHWSVWALANLT-KVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 738 q~wa~wa~~~~~-~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
|--+..-+.--. -|.-..--...-+=|.+|-|++++..|+
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d 436 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD 436 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch
Confidence 654443221111 1111112334556788888988887664
Done!