Query psy17257
Match_columns 778
No_of_seqs 492 out of 3010
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:22:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.7 8.9E-16 3.1E-20 165.9 17.9 214 51-322 10-258 (336)
2 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.7E-20 165.2 14.8 183 85-321 92-282 (336)
3 2ca6_A RAN GTPase-activating p 99.6 8.1E-15 2.8E-19 161.9 13.4 63 86-148 32-107 (386)
4 2ca6_A RAN GTPase-activating p 99.6 9.3E-15 3.2E-19 161.5 12.2 230 86-368 60-316 (386)
5 1z7x_W Ribonuclease inhibitor; 99.5 2.9E-14 1E-18 160.8 14.9 61 86-147 28-97 (461)
6 3goz_A Leucine-rich repeat-con 99.5 2.7E-14 9.1E-19 156.6 13.1 62 86-148 22-93 (362)
7 4fcg_A Uncharacterized protein 99.5 9.5E-15 3.2E-19 158.1 9.2 132 196-366 180-312 (328)
8 1ozn_A Reticulon 4 receptor; N 99.5 1.9E-14 6.6E-19 152.0 10.4 180 86-324 32-214 (285)
9 3zyj_A Leucine-rich repeat-con 99.5 3.1E-14 1.1E-18 160.2 10.7 136 196-368 157-292 (440)
10 1h6u_A Internalin H; cell adhe 99.5 4.9E-13 1.7E-17 143.2 19.2 189 86-368 41-230 (308)
11 4fcg_A Uncharacterized protein 99.5 3E-14 1E-18 154.1 9.6 200 86-368 81-290 (328)
12 1z7x_W Ribonuclease inhibitor; 99.5 4E-14 1.4E-18 159.7 10.8 256 77-368 106-383 (461)
13 3zyi_A Leucine-rich repeat-con 99.5 4E-14 1.4E-18 159.9 10.8 136 196-368 168-303 (452)
14 2z66_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 151.6 8.8 139 196-368 123-261 (306)
15 3o6n_A APL1; leucine-rich repe 99.5 1.2E-13 4.1E-18 152.7 12.7 107 225-369 226-332 (390)
16 1ozn_A Reticulon 4 receptor; N 99.5 5.9E-14 2E-18 148.2 9.6 194 72-326 44-240 (285)
17 3ogk_B Coronatine-insensitive 99.5 2.1E-13 7.3E-18 158.8 15.2 185 86-323 293-500 (592)
18 3v47_A TOLL-like receptor 5B a 99.5 2.9E-13 9.9E-18 152.4 15.4 86 225-324 275-360 (455)
19 3oja_B Anopheles plasmodium-re 99.5 1.3E-13 4.4E-18 161.4 13.0 106 226-369 233-338 (597)
20 3rgz_A Protein brassinosteroid 99.5 1.2E-13 4.2E-18 166.4 12.9 241 72-368 406-717 (768)
21 4glp_A Monocyte differentiatio 99.5 7.7E-14 2.6E-18 149.4 9.5 229 86-368 64-307 (310)
22 1ogq_A PGIP-2, polygalacturona 99.5 3E-14 1E-18 153.0 6.1 225 86-367 50-280 (313)
23 3goz_A Leucine-rich repeat-con 99.5 2E-13 6.7E-18 149.6 12.2 230 78-368 44-297 (362)
24 4fmz_A Internalin; leucine ric 99.4 1.1E-12 3.7E-17 142.3 17.1 213 85-367 131-345 (347)
25 2z66_A Variable lymphocyte rec 99.4 9.8E-14 3.3E-18 148.0 8.1 206 86-369 28-237 (306)
26 2p1m_B Transport inhibitor res 99.4 3.6E-13 1.2E-17 156.8 13.5 209 86-367 289-518 (594)
27 1ogq_A PGIP-2, polygalacturona 99.4 4.8E-14 1.6E-18 151.4 5.3 132 196-366 170-302 (313)
28 1xku_A Decorin; proteoglycan, 99.4 5.7E-13 2E-17 143.7 13.4 111 196-324 142-253 (330)
29 4fmz_A Internalin; leucine ric 99.4 2.2E-12 7.6E-17 139.8 18.1 191 86-324 66-256 (347)
30 1wwl_A Monocyte differentiatio 99.4 3.1E-13 1.1E-17 144.9 10.7 200 86-368 95-309 (312)
31 3rgz_A Protein brassinosteroid 99.4 3.7E-13 1.3E-17 162.2 12.1 171 72-265 380-551 (768)
32 2o6q_A Variable lymphocyte rec 99.4 4.2E-13 1.4E-17 140.7 10.7 181 86-326 37-220 (270)
33 3rfs_A Internalin B, repeat mo 99.4 2.2E-12 7.4E-17 135.5 16.0 176 86-325 41-219 (272)
34 2o6q_A Variable lymphocyte rec 99.4 9.7E-13 3.3E-17 137.9 12.2 200 87-368 17-218 (270)
35 3t6q_A CD180 antigen; protein- 99.4 3.6E-13 1.2E-17 157.5 9.7 235 86-368 278-513 (606)
36 3ogk_B Coronatine-insensitive 99.4 2.4E-12 8.3E-17 149.8 16.6 202 72-328 305-530 (592)
37 1h6t_A Internalin B; cell adhe 99.4 1.5E-12 5.2E-17 138.2 13.5 171 86-328 46-217 (291)
38 2z80_A TOLL-like receptor 2, v 99.4 1.9E-13 6.5E-18 149.0 6.2 224 87-368 53-290 (353)
39 2z62_A TOLL-like receptor 4, v 99.4 4.7E-13 1.6E-17 140.5 8.7 180 87-324 29-213 (276)
40 2z80_A TOLL-like receptor 2, v 99.4 1.1E-12 3.8E-17 142.9 11.6 228 72-368 64-314 (353)
41 1h6u_A Internalin H; cell adhe 99.4 2E-12 6.8E-17 138.5 13.2 170 86-327 63-233 (308)
42 3zyj_A Leucine-rich repeat-con 99.4 7.4E-13 2.5E-17 148.9 10.3 204 86-368 64-268 (440)
43 3zyi_A Leucine-rich repeat-con 99.4 7E-13 2.4E-17 149.6 9.8 204 86-368 75-279 (452)
44 1wwl_A Monocyte differentiatio 99.4 4.3E-13 1.5E-17 143.8 7.6 185 85-326 120-311 (312)
45 4glp_A Monocyte differentiatio 99.4 3.2E-13 1.1E-17 144.5 6.5 206 86-325 91-308 (310)
46 3o6n_A APL1; leucine-rich repe 99.4 1E-12 3.6E-17 145.1 10.7 60 86-147 69-129 (390)
47 1p9a_G Platelet glycoprotein I 99.4 1.1E-12 3.9E-17 139.1 10.0 197 86-368 10-208 (290)
48 3oja_A Leucine-rich immune mol 99.4 5.7E-13 2E-17 152.0 8.1 215 86-368 34-250 (487)
49 2id5_A Lingo-1, leucine rich r 99.4 1.1E-12 3.7E-17 148.9 10.1 237 72-368 44-285 (477)
50 3v47_A TOLL-like receptor 5B a 99.4 3.2E-12 1.1E-16 143.9 13.7 114 195-326 295-410 (455)
51 3t6q_A CD180 antigen; protein- 99.4 1.2E-12 4.2E-17 153.0 10.7 232 86-368 254-489 (606)
52 2id5_A Lingo-1, leucine rich r 99.3 1.4E-12 4.6E-17 148.1 10.5 239 72-368 68-309 (477)
53 3oja_B Anopheles plasmodium-re 99.3 1.4E-12 4.8E-17 152.6 10.9 222 86-368 75-314 (597)
54 3o53_A Protein LRIM1, AGAP0063 99.3 1.1E-12 3.8E-17 140.9 9.2 214 86-367 34-249 (317)
55 1xku_A Decorin; proteoglycan, 99.3 2.4E-12 8.1E-17 138.9 11.8 242 72-368 64-306 (330)
56 3oja_A Leucine-rich immune mol 99.3 7.4E-13 2.5E-17 151.1 7.9 224 72-363 46-270 (487)
57 1m9s_A Internalin B; cell inva 99.3 3.6E-12 1.2E-16 148.9 13.8 171 86-328 43-214 (605)
58 1o6v_A Internalin A; bacterial 99.3 1.3E-11 4.6E-16 139.7 18.0 82 196-288 240-321 (466)
59 1h6t_A Internalin B; cell adhe 99.3 1E-11 3.5E-16 131.8 15.9 169 108-368 45-213 (291)
60 2ft3_A Biglycan; proteoglycan, 99.3 1.2E-12 4.1E-17 141.4 8.8 59 87-147 55-114 (332)
61 2z81_A CD282 antigen, TOLL-lik 99.3 8E-13 2.7E-17 152.5 7.8 183 87-325 27-210 (549)
62 4ezg_A Putative uncharacterize 99.3 3E-12 1E-16 127.6 11.0 110 196-324 85-194 (197)
63 2p1m_B Transport inhibitor res 99.3 2.7E-12 9.4E-17 149.3 12.1 200 72-326 301-521 (594)
64 3vq2_A TLR4, TOLL-like recepto 99.3 1.1E-12 3.8E-17 153.3 8.7 228 85-368 327-558 (606)
65 4ezg_A Putative uncharacterize 99.3 1.1E-11 3.7E-16 123.5 14.7 177 51-288 15-193 (197)
66 3o53_A Protein LRIM1, AGAP0063 99.3 9.6E-13 3.3E-17 141.4 7.5 226 72-365 46-272 (317)
67 3rfs_A Internalin B, repeat mo 99.3 1.2E-11 4.1E-16 129.8 15.1 177 108-368 40-218 (272)
68 2z62_A TOLL-like receptor 4, v 99.3 2.4E-12 8.3E-17 135.1 9.8 195 72-326 40-239 (276)
69 3m19_A Variable lymphocyte rec 99.3 2.5E-12 8.6E-17 133.2 9.7 178 87-326 15-194 (251)
70 2z7x_B TOLL-like receptor 1, v 99.3 1.2E-11 4E-16 141.9 15.3 134 196-368 345-481 (520)
71 1o6v_A Internalin A; bacterial 99.3 1.6E-11 5.6E-16 139.0 16.2 212 85-368 176-388 (466)
72 4eco_A Uncharacterized protein 99.3 1.5E-12 5.2E-17 153.5 6.9 110 196-324 270-390 (636)
73 3bz5_A Internalin-J, INLJ; leu 99.3 2.4E-11 8.3E-16 137.4 16.4 214 86-378 42-256 (457)
74 1p9a_G Platelet glycoprotein I 99.3 2.7E-12 9.3E-17 136.2 7.8 176 86-325 31-209 (290)
75 2z81_A CD282 antigen, TOLL-lik 99.3 1.5E-11 5.3E-16 141.7 14.5 126 196-367 384-509 (549)
76 1m9s_A Internalin B; cell inva 99.3 2.6E-11 8.8E-16 141.7 15.4 169 108-368 42-210 (605)
77 4ecn_A Leucine-rich repeat pro 99.3 3.5E-12 1.2E-16 154.4 8.1 110 195-324 511-632 (876)
78 3ul1_B Importin subunit alpha- 99.3 4.6E-10 1.6E-14 128.6 25.3 211 532-777 246-462 (510)
79 4b8j_A Importin subunit alpha- 99.3 1.4E-10 4.6E-15 133.3 20.2 308 424-777 160-480 (528)
80 2z63_A TOLL-like receptor 4, v 99.2 4.6E-12 1.6E-16 146.6 7.5 226 87-368 305-531 (570)
81 3vq2_A TLR4, TOLL-like recepto 99.2 2E-12 6.9E-17 151.1 4.3 209 84-326 348-560 (606)
82 3un9_A NLR family member X1; l 99.2 1E-11 3.5E-16 136.5 9.2 164 86-288 72-251 (372)
83 1ziw_A TOLL-like receptor 3; i 99.2 1.8E-11 6.2E-16 145.1 11.3 66 78-147 347-417 (680)
84 2ft3_A Biglycan; proteoglycan, 99.2 5.2E-12 1.8E-16 136.3 6.0 241 72-368 66-307 (332)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 4.7E-11 1.6E-15 138.5 14.5 135 196-368 374-510 (562)
86 3bz5_A Internalin-J, INLJ; leu 99.2 8.2E-11 2.8E-15 133.0 15.9 183 86-325 64-247 (457)
87 3un9_A NLR family member X1; l 99.2 1.1E-11 3.8E-16 136.3 8.4 180 98-328 61-256 (372)
88 2xwt_C Thyrotropin receptor; s 99.2 4.3E-12 1.5E-16 130.3 4.7 177 86-324 31-218 (239)
89 1ziw_A TOLL-like receptor 3; i 99.2 1.7E-11 5.9E-16 145.3 10.5 229 86-368 381-622 (680)
90 4eco_A Uncharacterized protein 99.2 9.8E-12 3.4E-16 146.5 8.2 205 86-324 249-470 (636)
91 1xeu_A Internalin C; cellular 99.2 3.7E-12 1.3E-16 133.2 4.0 106 196-326 82-187 (263)
92 4ecn_A Leucine-rich repeat pro 99.2 2.4E-11 8.3E-16 147.1 10.7 235 86-368 491-741 (876)
93 3tpo_A Importin subunit alpha- 99.2 8.1E-10 2.8E-14 127.2 23.0 211 532-777 265-481 (529)
94 2z63_A TOLL-like receptor 4, v 99.2 1.2E-11 4.2E-16 143.1 7.5 207 85-326 324-533 (570)
95 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 7.9E-11 2.7E-15 136.5 13.6 70 72-148 64-134 (562)
96 3m19_A Variable lymphocyte rec 99.2 2.3E-11 8E-16 125.9 7.7 154 86-288 35-191 (251)
97 1wa5_B Importin alpha subunit; 99.2 5.5E-11 1.9E-15 136.8 11.7 308 424-777 173-494 (530)
98 1jdh_A Beta-catenin; beta-cate 99.2 1.8E-10 6E-15 131.8 15.7 325 424-777 185-514 (529)
99 2jdq_A Importin alpha-1 subuni 99.2 5E-10 1.7E-14 125.1 19.1 307 424-777 107-427 (450)
100 3j0a_A TOLL-like receptor 5; m 99.2 2.1E-11 7.2E-16 148.4 8.4 91 195-288 119-216 (844)
101 4db8_A Armadillo-repeat protei 99.2 2.8E-10 9.6E-15 117.1 15.2 209 532-777 26-235 (252)
102 2z7x_B TOLL-like receptor 1, v 99.2 4.9E-11 1.7E-15 136.7 9.7 205 84-326 274-483 (520)
103 4hxt_A De novo protein OR329; 99.2 1.9E-10 6.6E-15 117.7 13.2 209 532-777 16-225 (252)
104 2o6s_A Variable lymphocyte rec 99.1 2.8E-11 9.7E-16 121.4 5.1 105 196-325 73-179 (208)
105 2je0_A Acidic leucine-rich nuc 99.1 3E-11 1E-15 114.4 4.9 136 196-364 14-149 (149)
106 1xeu_A Internalin C; cellular 99.1 1.9E-10 6.6E-15 120.1 11.5 143 86-288 41-184 (263)
107 3cvr_A Invasion plasmid antige 99.1 1.1E-10 3.7E-15 135.1 9.9 184 86-368 59-243 (571)
108 2o6s_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 114.4 10.8 112 196-325 49-162 (208)
109 2ell_A Acidic leucine-rich nuc 99.1 5E-10 1.7E-14 108.2 12.4 113 196-324 46-160 (168)
110 3j0a_A TOLL-like receptor 5; m 99.1 5.2E-10 1.8E-14 136.1 15.5 74 72-148 85-161 (844)
111 2ell_A Acidic leucine-rich nuc 99.1 3.7E-11 1.3E-15 116.2 4.0 139 196-367 21-159 (168)
112 2xwt_C Thyrotropin receptor; s 99.1 4.9E-11 1.7E-15 122.4 4.7 181 108-368 30-218 (239)
113 2je0_A Acidic leucine-rich nuc 99.1 1.3E-10 4.3E-15 110.1 6.7 109 196-320 39-149 (149)
114 2v70_A SLIT-2, SLIT homolog 2 99.1 5.4E-10 1.8E-14 113.4 11.6 113 196-326 54-168 (220)
115 3e6j_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 114.3 11.1 153 110-326 20-174 (229)
116 3g06_A SSPH2 (leucine-rich rep 99.1 5.3E-10 1.8E-14 130.8 12.7 136 199-368 161-297 (622)
117 2z6h_A Catenin beta-1, beta-ca 99.0 1.1E-09 3.8E-14 129.1 15.3 325 424-777 182-511 (644)
118 3nmw_A APC variant protein; AR 99.0 4.8E-09 1.6E-13 114.2 18.4 198 532-761 141-345 (354)
119 2v9t_B SLIT homolog 2 protein 99.0 5.2E-10 1.8E-14 113.5 9.6 113 196-326 53-167 (220)
120 1jdh_A Beta-catenin; beta-cate 99.0 3.3E-09 1.1E-13 121.2 16.9 325 424-777 17-368 (529)
121 4b8j_A Importin subunit alpha- 99.0 1.9E-08 6.4E-13 115.4 22.8 342 385-777 75-427 (528)
122 2v70_A SLIT-2, SLIT homolog 2 99.0 1.4E-09 4.7E-14 110.4 11.3 133 199-368 32-166 (220)
123 3nmz_A APC variant protein; pr 99.0 6.3E-09 2.2E-13 116.8 17.4 193 532-756 257-456 (458)
124 3nmz_A APC variant protein; pr 99.0 1.8E-08 6E-13 113.2 20.8 214 532-776 214-433 (458)
125 2xot_A Amphoterin-induced prot 99.0 3.2E-10 1.1E-14 124.0 6.0 177 89-326 21-204 (361)
126 3tpo_A Importin subunit alpha- 99.0 1.6E-08 5.6E-13 116.3 20.3 167 581-777 266-433 (529)
127 3ul1_B Importin subunit alpha- 99.0 1.6E-08 5.6E-13 115.7 19.8 167 581-777 247-414 (510)
128 1jl5_A Outer protein YOPM; leu 98.9 3.7E-10 1.3E-14 127.5 5.3 98 199-324 131-228 (454)
129 1jl5_A Outer protein YOPM; leu 98.9 2.4E-09 8.1E-14 120.9 11.9 101 196-324 150-250 (454)
130 1xm9_A Plakophilin 1; armadill 98.9 6.4E-09 2.2E-13 117.4 15.3 234 532-777 16-344 (457)
131 2z6h_A Catenin beta-1, beta-ca 98.9 6.4E-09 2.2E-13 122.6 15.9 323 425-776 15-364 (644)
132 3e6j_A Variable lymphocyte rec 98.9 1.3E-09 4.4E-14 111.3 8.3 132 198-368 39-172 (229)
133 3g06_A SSPH2 (leucine-rich rep 98.9 4.3E-09 1.5E-13 123.1 13.7 213 86-368 61-274 (622)
134 1a9n_A U2A', U2A'; complex (nu 98.9 2.9E-09 1E-13 103.8 10.1 112 196-324 39-153 (176)
135 4g8a_A TOLL-like receptor 4; l 98.9 5.7E-10 2E-14 130.2 5.7 207 85-326 370-582 (635)
136 3e4g_A ATP synthase subunit S, 98.9 1.1E-09 3.7E-14 106.5 6.7 104 86-228 61-170 (176)
137 1a9n_A U2A', U2A'; complex (nu 98.9 7.3E-10 2.5E-14 108.1 5.5 132 196-366 16-151 (176)
138 2v9t_B SLIT homolog 2 protein 98.9 3.3E-09 1.1E-13 107.6 10.4 132 199-368 32-165 (220)
139 2xot_A Amphoterin-induced prot 98.9 2.2E-09 7.5E-14 117.3 9.3 155 111-325 20-177 (361)
140 3cvr_A Invasion plasmid antige 98.9 1.9E-09 6.7E-14 124.6 9.2 158 86-325 80-244 (571)
141 2z6g_A B-catenin; FULL-length, 98.9 1.6E-08 5.6E-13 121.7 17.0 325 424-777 150-501 (780)
142 3now_A UNC-45 protein, SD10334 98.9 8.5E-08 2.9E-12 114.0 22.6 291 439-777 303-636 (810)
143 3now_A UNC-45 protein, SD10334 98.9 5.5E-08 1.9E-12 115.6 20.9 347 379-775 368-761 (810)
144 4hxt_A De novo protein OR329; 98.9 5.8E-08 2E-12 99.1 17.7 189 532-756 58-247 (252)
145 2ra8_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 114.0 10.0 120 198-327 192-323 (362)
146 4g8a_A TOLL-like receptor 4; l 98.8 6.3E-09 2.2E-13 121.4 11.2 82 200-288 53-136 (635)
147 1w8a_A SLIT protein; signaling 98.8 5.6E-09 1.9E-13 103.4 8.6 113 199-326 29-141 (192)
148 4db6_A Armadillo repeat protei 98.8 7.9E-09 2.7E-13 103.1 9.4 181 561-777 12-193 (210)
149 3nmw_A APC variant protein; AR 98.8 4.2E-08 1.4E-12 106.7 15.8 214 532-776 98-317 (354)
150 3l6x_A Catenin delta-1; cateni 98.8 3.5E-08 1.2E-12 113.6 15.3 235 532-777 62-368 (584)
151 1ds9_A Outer arm dynein; leuci 98.8 2.5E-10 8.5E-15 113.7 -2.2 115 196-324 67-185 (198)
152 1xm9_A Plakophilin 1; armadill 98.8 1.1E-07 3.7E-12 107.4 19.1 327 429-776 7-431 (457)
153 2o6r_A Variable lymphocyte rec 98.8 2.1E-08 7.2E-13 97.6 10.9 111 198-326 27-139 (177)
154 2z6g_A B-catenin; FULL-length, 98.8 1.4E-07 4.8E-12 113.5 19.1 306 425-777 319-647 (780)
155 2jdq_A Importin alpha-1 subuni 98.8 2.4E-07 8.2E-12 103.2 19.6 304 424-776 64-373 (450)
156 4db6_A Armadillo repeat protei 98.7 1.7E-07 5.9E-12 93.3 16.4 183 532-750 26-209 (210)
157 1dce_A Protein (RAB geranylger 98.7 1E-08 3.5E-13 118.8 8.1 105 200-325 442-547 (567)
158 4db8_A Armadillo-repeat protei 98.7 9.3E-08 3.2E-12 98.1 13.6 183 532-750 68-251 (252)
159 1wa5_B Importin alpha subunit; 98.7 1.8E-07 6.2E-12 107.3 17.4 231 532-776 145-395 (530)
160 4ay9_X Follicle-stimulating ho 98.7 6.8E-09 2.3E-13 112.8 4.4 113 196-325 101-216 (350)
161 2wfh_A SLIT homolog 2 protein 98.7 3.4E-08 1.2E-12 97.9 9.0 109 199-326 31-141 (193)
162 4b8c_D Glucose-repressible alc 98.7 1.3E-08 4.3E-13 121.6 6.7 83 197-288 245-328 (727)
163 1w8a_A SLIT protein; signaling 98.7 6.3E-08 2.1E-12 95.8 9.7 126 202-368 11-139 (192)
164 1dce_A Protein (RAB geranylger 98.6 3.6E-08 1.2E-12 114.3 9.1 110 195-326 405-523 (567)
165 3e4g_A ATP synthase subunit S, 98.6 3.2E-08 1.1E-12 96.1 6.7 105 199-314 61-170 (176)
166 4b8c_D Glucose-repressible alc 98.6 3E-08 1E-12 118.4 6.4 109 196-325 221-330 (727)
167 2o6r_A Variable lymphocyte rec 98.6 1.4E-07 4.6E-12 91.8 9.1 127 110-288 8-136 (177)
168 1io0_A Tropomodulin; LRR prote 98.5 2.3E-07 8E-12 91.3 9.5 124 194-327 31-167 (185)
169 1io0_A Tropomodulin; LRR prote 98.5 2.7E-07 9.1E-12 90.8 9.9 115 86-238 36-164 (185)
170 2wfh_A SLIT homolog 2 protein 98.5 2.1E-07 7.2E-12 92.2 8.5 86 196-288 51-138 (193)
171 1ds9_A Outer arm dynein; leuci 98.5 1.2E-08 4E-13 101.5 -1.6 110 195-325 44-154 (198)
172 3l6x_A Catenin delta-1; cateni 98.5 5.6E-06 1.9E-10 95.2 20.1 312 425-775 91-456 (584)
173 2ra8_A Uncharacterized protein 98.4 6.4E-07 2.2E-11 97.7 10.2 37 252-288 279-319 (362)
174 3sb4_A Hypothetical leucine ri 98.4 5.9E-07 2E-11 96.5 8.4 105 200-324 203-310 (329)
175 3g39_A Variable lymphocyte rec 98.3 6.7E-07 2.3E-11 86.6 7.5 106 200-326 10-117 (170)
176 1xqr_A HSPBP1 protein; armadil 98.3 5.1E-06 1.8E-10 87.9 14.0 161 586-777 60-222 (296)
177 3g39_A Variable lymphocyte rec 98.3 1.1E-06 3.8E-11 85.0 7.5 83 199-288 30-114 (170)
178 2r9u_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 85.2 7.7 105 201-326 14-120 (174)
179 4ay9_X Follicle-stimulating ho 98.2 5.8E-07 2E-11 97.5 5.2 106 197-322 126-234 (350)
180 2r9u_A Variable lymphocyte rec 98.2 1.7E-06 5.7E-11 84.2 7.6 83 199-288 33-117 (174)
181 3opb_A SWI5-dependent HO expre 98.2 7.6E-05 2.6E-09 87.5 21.3 232 505-776 329-618 (778)
182 1xqr_A HSPBP1 protein; armadil 98.2 1.4E-05 4.8E-10 84.5 14.0 167 532-707 96-266 (296)
183 3tt9_A Plakophilin-2; cell adh 98.1 5.4E-06 1.9E-10 84.3 7.3 144 533-684 25-182 (233)
184 2ifg_A High affinity nerve gro 98.0 1.1E-05 3.8E-10 87.0 8.1 63 221-288 27-92 (347)
185 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.3E-10 82.7 6.6 111 196-317 138-257 (267)
186 3rw6_A Nuclear RNA export fact 97.7 2.8E-05 9.6E-10 80.8 5.6 83 196-284 167-259 (267)
187 3sb4_A Hypothetical leucine ri 97.6 5.7E-05 1.9E-09 80.9 7.3 102 196-317 223-327 (329)
188 2ifg_A High affinity nerve gro 97.6 4.1E-05 1.4E-09 82.4 6.1 86 195-288 27-115 (347)
189 3opb_A SWI5-dependent HO expre 97.6 0.0033 1.1E-07 73.7 21.3 342 384-775 330-708 (778)
190 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00017 5.9E-09 71.1 8.6 115 86-238 41-170 (197)
191 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00027 9.2E-09 69.7 8.2 121 194-323 36-169 (197)
192 3tt9_A Plakophilin-2; cell adh 97.4 0.00059 2E-08 69.2 10.7 165 585-773 29-203 (233)
193 4fdw_A Leucine rich hypothetic 97.4 0.00024 8.3E-09 78.4 7.9 201 78-323 152-357 (401)
194 4fdw_A Leucine rich hypothetic 96.7 0.0015 5.1E-08 72.0 6.3 221 78-368 130-358 (401)
195 4fdd_A Transportin-1; heat rep 94.7 1.6 5.4E-05 52.3 21.8 305 423-776 399-723 (852)
196 2bpt_A Importin beta-1 subunit 93.8 5.3 0.00018 47.4 23.7 231 439-684 424-670 (861)
197 2bpt_A Importin beta-1 subunit 93.7 6.4 0.00022 46.6 24.1 247 422-683 452-712 (861)
198 1qgr_A Protein (importin beta 93.4 6.8 0.00023 46.5 23.6 249 422-682 449-722 (876)
199 1ibr_B P95, importin beta-1 su 93.0 11 0.00039 40.5 26.4 162 586-754 237-441 (462)
200 1qgr_A Protein (importin beta 92.2 7.8 0.00027 46.0 22.0 291 423-756 407-728 (876)
201 1w63_A Adapter-related protein 92.2 6.3 0.00021 45.4 20.2 189 532-754 327-544 (618)
202 4fdd_A Transportin-1; heat rep 91.1 12 0.00041 44.6 21.9 356 385-776 11-412 (852)
203 4gmo_A Putative uncharacterize 90.6 0.92 3.1E-05 53.2 11.0 95 584-681 158-257 (684)
204 1oyz_A Hypothetical protein YI 89.3 9.7 0.00033 38.4 16.5 187 532-774 68-262 (280)
205 4gt6_A Cell surface protein; l 86.7 1.1 3.6E-05 48.6 7.4 107 196-322 262-368 (394)
206 4fs7_A Uncharacterized protein 86.5 0.8 2.7E-05 49.6 6.3 198 77-322 64-264 (394)
207 3ltj_A Alpharep-4; protein eng 85.8 16 0.00054 34.6 14.7 108 532-681 28-135 (201)
208 3grl_A General vesicular trans 85.6 4.7 0.00016 46.2 12.0 195 532-754 136-346 (651)
209 1b3u_A Protein (protein phosph 85.3 31 0.0011 38.4 19.2 195 532-754 101-314 (588)
210 4gt6_A Cell surface protein; l 84.8 1.9 6.5E-05 46.5 8.3 85 220-321 260-344 (394)
211 4fs7_A Uncharacterized protein 84.4 1.9 6.5E-05 46.5 8.0 102 196-321 273-376 (394)
212 2vgl_B AP-2 complex subunit be 83.8 29 0.001 39.4 18.2 282 423-754 81-386 (591)
213 4h09_A Hypothetical leucine ri 82.8 2.1 7.1E-05 45.8 7.4 107 196-321 237-343 (379)
214 1b3u_A Protein (protein phosph 81.7 25 0.00086 39.1 16.4 139 623-776 415-570 (588)
215 1oyz_A Hypothetical protein YI 81.6 7.7 0.00026 39.1 11.0 63 606-682 21-83 (280)
216 4gmo_A Putative uncharacterize 81.6 4.3 0.00015 47.4 10.1 149 532-686 48-218 (684)
217 3rfe_A Platelet glycoprotein I 80.2 1.4 4.8E-05 39.8 4.1 15 274-288 53-67 (130)
218 3ltm_A Alpha-REP4; protein eng 79.7 17 0.00057 34.7 12.3 60 608-681 50-109 (211)
219 3ltm_A Alpha-REP4; protein eng 79.0 10 0.00034 36.3 10.4 132 606-777 17-156 (211)
220 3rfe_A Platelet glycoprotein I 78.9 2.1 7.1E-05 38.6 4.8 54 203-265 12-68 (130)
221 1ibr_B P95, importin beta-1 su 78.8 72 0.0025 34.0 18.4 57 623-683 379-438 (462)
222 3ltj_A Alpharep-4; protein eng 77.1 16 0.00054 34.6 11.1 133 608-777 45-182 (201)
223 1u6g_C TIP120 protein, CAND1; 76.9 1.5E+02 0.0051 36.6 22.7 234 384-640 44-285 (1230)
224 3grl_A General vesicular trans 76.7 33 0.0011 39.3 14.8 148 532-682 180-342 (651)
225 4h09_A Hypothetical leucine ri 73.4 3.5 0.00012 44.0 5.6 82 196-286 260-343 (379)
226 1w63_A Adapter-related protein 73.3 1.3E+02 0.0045 34.2 22.5 185 465-681 103-305 (618)
227 3qml_C Protein SLS1, nucleotid 72.4 24 0.00081 36.5 11.1 102 532-639 84-189 (315)
228 2vgl_B AP-2 complex subunit be 63.2 31 0.0011 39.2 11.1 95 625-756 101-195 (591)
229 1u6g_C TIP120 protein, CAND1; 59.3 2.1E+02 0.0073 35.2 18.7 218 509-755 47-289 (1230)
230 2qk2_A LP04448P; mini spindles 53.5 1.6E+02 0.0056 28.4 15.9 172 463-682 28-205 (242)
231 3gjx_A Exportin-1; transport, 47.6 3.8E+02 0.013 32.8 17.5 58 423-482 565-628 (1073)
232 1te4_A Conserved protein MTH18 46.8 55 0.0019 28.5 7.7 57 610-680 44-100 (131)
233 1te4_A Conserved protein MTH18 46.2 28 0.00094 30.6 5.5 27 653-681 44-70 (131)
234 2x1g_F Cadmus; transport prote 45.0 2.1E+02 0.0071 34.2 14.9 35 606-640 689-723 (971)
235 3eg5_B Protein diaphanous homo 35.2 2.2E+02 0.0077 30.2 11.5 142 594-751 96-247 (383)
236 2f31_A Diaphanous protein homo 32.3 2.5E+02 0.0086 27.4 10.6 138 597-751 33-181 (233)
237 2x1g_F Cadmus; transport prote 28.1 3.9E+02 0.013 31.8 13.4 66 423-490 38-103 (971)
238 3ibv_A Exportin-T; karyopherin 27.8 8.6E+02 0.029 29.2 18.1 59 622-685 205-263 (980)
239 4hat_C Exportin-1; heat repeat 21.8 8.5E+02 0.029 29.4 14.7 300 422-775 538-879 (1023)
240 3dad_A FH1/FH2 domain-containi 21.7 3.1E+02 0.011 28.6 9.1 133 602-753 154-289 (339)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=8.9e-16 Score=165.85 Aligned_cols=214 Identities=22% Similarity=0.241 Sum_probs=121.1
Q ss_pred CCCChHHHHHHHHHHH-----hcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc------------------
Q psy17257 51 VKFPREISEKFLSMYE-----KSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL------------------ 107 (778)
Q Consensus 51 ~~LP~ei~~~ll~~l~-----~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~------------------ 107 (778)
..||.|+..+|+..+. ... .+...+..+..++ ..++.++++++.+.+..+..+.
T Consensus 10 ~~LP~eil~~If~~L~~~d~~~~~-~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~ 86 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLPELLKVS-GVCKRWYRLASDE--SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPL 86 (336)
T ss_dssp SSSCHHHHHHHHTTSCHHHHHHTT-SSCHHHHHHHTCS--TTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCC
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHhcCc--hhheeeccccccCCHHHHHhhhhccceEEEcCCccccccc
Confidence 5689999988876432 233 3666666665443 3577888887777765554331
Q ss_pred -----cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCC
Q psy17257 108 -----SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRAT 182 (778)
Q Consensus 108 -----~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~ 182 (778)
.++|++|++++| .+++..+..+...+++|++|++++|... +..+
T Consensus 87 ~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~--~~~~---------------------------- 135 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLS--DPIV---------------------------- 135 (336)
T ss_dssp CSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCC--HHHH----------------------------
T ss_pred hhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccC--HHHH----------------------------
Confidence 256777777777 4766656655566778888888777542 1111
Q ss_pred CCCCcccchhhhhhcCCCccEEEecCC-cccChhHHHHHhccCCCCCeEeccCc-cccCCcccch-HHHhccc-cccEEE
Q psy17257 183 SSGSLTYKQRGYILKAPKLRRFSLIGH-TLMSQSICTQLYRDMPHLTHLNLSKC-MFLFDNKDLS-FLAEFKD-TLVSLV 258 (778)
Q Consensus 183 ~~g~l~~~~~~~~~~l~~L~~L~Ls~~-~l~s~~~l~~~~~~lp~L~~LdLS~~-~i~~~~~~l~-~L~~l~~-~L~~L~ 258 (778)
..+..+++|++|++++| .+ ++..++..+..+++|++|++++| .++ +. .+. .+..+ + +|++|+
T Consensus 136 ----------~~l~~~~~L~~L~L~~~~~l-~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~-~~~~~~~~l-~~~L~~L~ 201 (336)
T 2ast_B 136 ----------NTLAKNSNLVRLNLSGCSGF-SEFALQTLLSSCSRLDELNLSWCFDFT-EK-HVQVAVAHV-SETITQLN 201 (336)
T ss_dssp ----------HHHTTCTTCSEEECTTCBSC-CHHHHHHHHHHCTTCCEEECCCCTTCC-HH-HHHHHHHHS-CTTCCEEE
T ss_pred ----------HHHhcCCCCCEEECCCCCCC-CHHHHHHHHhcCCCCCEEcCCCCCCcC-hH-HHHHHHHhc-ccCCCEEE
Confidence 11244666666666666 34 55455555566666666666666 554 11 122 24444 4 666666
Q ss_pred cCCC--CCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 259 LFNV--SIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 259 L~~~--~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
+++| .+++ .++..+..+++|++|++++|..+++.+ +. .+..+++|+.|++++|.
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---------~~-~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC---------FQ-EFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG---------GG-GGGGCTTCCEEECTTCT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH---------HH-HHhCCCCCCEeeCCCCC
Confidence 6666 3332 333444556666666666665322110 11 24455666666666664
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.1e-15 Score=165.17 Aligned_cols=183 Identities=21% Similarity=0.250 Sum_probs=144.5
Q ss_pred CCceeEEEeeCCccCHHHHH-hhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 85 ITHMKSVKLRNAEVSDSGMQ-KLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~~l~-~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
..+|++|+|++|.+++.++. .+. +++|++|++++| .+++.....++. +++|++|++++|..+++...+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~-------- 161 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQ-------- 161 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHH--------
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHH--------
Confidence 36999999999999987665 343 789999999999 698877777765 899999999999654321211
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCC-cccChhHHHHHhccCC-CCCeEeccCcc--cc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGH-TLMSQSICTQLYRDMP-HLTHLNLSKCM--FL 238 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~-~l~s~~~l~~~~~~lp-~L~~LdLS~~~--i~ 238 (778)
.++..+++|++|++++| .+ ++.++...+..+| +|++|++++|. ++
T Consensus 162 ------------------------------~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~l~~~L~~L~l~~~~~~~~ 210 (336)
T 2ast_B 162 ------------------------------TLLSSCSRLDELNLSWCFDF-TEKHVQVAVAHVSETITQLNLSGYRKNLQ 210 (336)
T ss_dssp ------------------------------HHHHHCTTCCEEECCCCTTC-CHHHHHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred ------------------------------HHHhcCCCCCEEcCCCCCCc-ChHHHHHHHHhcccCCCEEEeCCCcccCC
Confidence 23478899999999999 77 7777777889999 99999999994 44
Q ss_pred CCcccch-HHHhccccccEEEcCCCC-CcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEE
Q psy17257 239 FDNKDLS-FLAEFKDTLVSLVLFNVS-IVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSL 316 (778)
Q Consensus 239 ~~~~~l~-~L~~l~~~L~~L~L~~~~-~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~L 316 (778)
+. .++ .+..+ ++|++|++++|. +++..+..+.++++|++|++++|...++. .+. .+..+++|+.|
T Consensus 211 -~~-~l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------~~~-~l~~~~~L~~L 277 (336)
T 2ast_B 211 -KS-DLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE---------TLL-ELGEIPTLKTL 277 (336)
T ss_dssp -HH-HHHHHHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG---------GGG-GGGGCTTCCEE
T ss_pred -HH-HHHHHHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH---------HHH-HHhcCCCCCEE
Confidence 22 343 35677 799999999999 67777888999999999999999642321 111 26779999999
Q ss_pred eecCC
Q psy17257 317 DISGT 321 (778)
Q Consensus 317 DLSgn 321 (778)
+++||
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 99999
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=8.1e-15 Score=161.92 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=39.1
Q ss_pred CceeEEEeeCCccCHHHHHhh----c-cCCccEEecCCC--CCCCHh---HHHHHH---hcCCCCceeecCCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGMQKL----L-SHHVQELELIKC--ANVSQA---SLEVLN---MSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L----~-~~~L~~LdLs~~--~~lt~~---~l~~L~---~~~~~L~~L~Ls~c~~~ 148 (778)
++|+.|+|++|.+++.+...+ . .++|++|+|++| +.+++. ++..++ ..+++|++|+|++|.+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 467778888777777666543 2 567788887776 233322 232222 35677788888777654
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=9.3e-15 Score=161.47 Aligned_cols=230 Identities=15% Similarity=0.102 Sum_probs=151.2
Q ss_pred CceeEEEeeCCccC------HHHHHhh----c-cCCccEEecCCCCCCCHhHHHHH---HhcCCCCceeecCCCCCCCcc
Q psy17257 86 THMKSVKLRNAEVS------DSGMQKL----L-SHHVQELELIKCANVSQASLEVL---NMSSDQLYSLSLGPHCSMFPD 151 (778)
Q Consensus 86 ~~L~~L~L~~~~is------d~~l~~L----~-~~~L~~LdLs~~~~lt~~~l~~L---~~~~~~L~~L~Ls~c~~~~~~ 151 (778)
++|+.|+|++|.++ +.++..+ . +++|++|+|++| .+++.+...+ ...+++|++|+|++|.+. +
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~--~ 136 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG--P 136 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCH--H
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCC--H
Confidence 69999999997543 2344332 2 689999999998 6887544322 246789999999999863 1
Q ss_pred ccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHH---HHhccCCCCC
Q psy17257 152 CLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICT---QLYRDMPHLT 228 (778)
Q Consensus 152 ~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~---~~~~~lp~L~ 228 (778)
.... .++... .... ...+.+..++|++|++++|.+ ++.+++ ..+..+++|+
T Consensus 137 ~~~~--~l~~~l-------~~l~----------------~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 137 QAGA--KIARAL-------QELA----------------VNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHH--HHHHHH-------HHHH----------------HHHHHHTCCCCCEEECCSSCC-TGGGHHHHHHHHHHCTTCC
T ss_pred HHHH--HHHHHH-------HHHh----------------hhhhcccCCCCcEEECCCCCC-CcHHHHHHHHHHHhCCCcC
Confidence 1110 000000 0000 000112228999999999998 655555 4566899999
Q ss_pred eEeccCccccCCcc---cch-HHHhccccccEEEcCCCCCc----chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCch
Q psy17257 229 HLNLSKCMFLFDNK---DLS-FLAEFKDTLVSLVLFNVSIV----KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPN 300 (778)
Q Consensus 229 ~LdLS~~~i~~~~~---~l~-~L~~l~~~L~~L~L~~~~~~----~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~ 300 (778)
+|++++|.++ +.+ .++ .+..+ ++|++|+|++|.++ ..++..+..+++|++|++++|.+ ++.|.
T Consensus 191 ~L~L~~n~l~-~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~------ 261 (386)
T 2ca6_A 191 TVKMVQNGIR-PEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARGA------ 261 (386)
T ss_dssp EEECCSSCCC-HHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-CHHHH------
T ss_pred EEECcCCCCC-HhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-chhhH------
Confidence 9999999887 221 122 45566 79999999999986 34566788899999999999987 32111
Q ss_pred hhHHHHH--hcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 301 DMLSYII--FKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 301 ~~L~~~~--~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
..+...+ ..+++|+.|++++|.+.+.++.. +|..+....++|++|.|.+|.+.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~---------------l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRT---------------LKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH---------------HHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHH---------------HHHHHHhcCCCceEEEccCCcCC
Confidence 1233334 33899999999999987543321 23333124589999999988843
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=2.9e-14 Score=160.77 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=38.8
Q ss_pred CceeEEEeeCCccCHHHHHhhc-----cCCccEEecCCCCCCCHhHHHHHHhcCC----CCceeecCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-----SHHVQELELIKCANVSQASLEVLNMSSD----QLYSLSLGPHCS 147 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~~l~~L~~~~~----~L~~L~Ls~c~~ 147 (778)
++|+.|+|++|.+++.+...+. .++|++|++++| .+++..+..++..++ +|++|++++|..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 4677777777777766543322 466777777776 566656655554444 577777777764
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=2.7e-14 Score=156.56 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=41.3
Q ss_pred CceeEEEeeCCccCHHHH----Hhhc-cC-CccEEecCCCCCCCHhHHHHHHh----cCCCCceeecCCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGM----QKLL-SH-HVQELELIKCANVSQASLEVLNM----SSDQLYSLSLGPHCSM 148 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l----~~L~-~~-~L~~LdLs~~~~lt~~~l~~L~~----~~~~L~~L~Ls~c~~~ 148 (778)
.+|+.|+|++|.+++.+. ..+. .+ +|++|+|++| .+++.....++. ..++|++|+|++|...
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 458888888888776655 3443 34 7888888887 576654443332 2378888888888753
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.53 E-value=9.5e-15 Score=158.06 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=95.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc-hHHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL-SFLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l-~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
..+++|+.|++++|.+ + .++..+..+++|++|++++|.++ .+ ..+..+ ++|+.|++++|.+.+..+..++.
T Consensus 180 ~~l~~L~~L~L~~n~l-~--~lp~~l~~l~~L~~L~L~~N~l~----~l~~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGI-R--SLPASIANLQNLKSLKIRNSPLS----ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp EESTTCCEEEEEEECC-C--CCCGGGGGCTTCCEEEEESSCCC----CCCGGGGGC-TTCCEEECTTCTTCCBCCCCTTC
T ss_pred ccCCCCCEEECcCCCc-C--cchHhhcCCCCCCEEEccCCCCC----cCchhhccC-CCCCEEECcCCcchhhhHHHhcC
Confidence 4588888888888887 4 23335677888888888888887 33 346777 68888888888887777777888
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVD 354 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~ 354 (778)
+++|++|++++|+... .. |. .+..+++|+.||+++|++.+. +|..+. ..
T Consensus 252 l~~L~~L~L~~n~~~~---~~---p~-----~~~~l~~L~~L~L~~n~~~~~-------------------iP~~l~-~L 300 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLL---TL---PL-----DIHRLTQLEKLDLRGCVNLSR-------------------LPSLIA-QL 300 (328)
T ss_dssp CCCCCEEECTTCTTCC---BC---CT-----TGGGCTTCCEEECTTCTTCCC-------------------CCGGGG-GS
T ss_pred CCCCCEEECCCCCchh---hc---ch-----hhhcCCCCCEEeCCCCCchhh-------------------ccHHHh-hc
Confidence 8888888888887622 22 22 257788888888888876532 344443 66
Q ss_pred ccceEeeccccC
Q psy17257 355 RPLEFLGLYGTK 366 (778)
Q Consensus 355 ~~L~~L~L~~t~ 366 (778)
++|+.+.+....
T Consensus 301 ~~L~~l~l~~~~ 312 (328)
T 4fcg_A 301 PANCIILVPPHL 312 (328)
T ss_dssp CTTCEEECCGGG
T ss_pred cCceEEeCCHHH
Confidence 778888776554
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.52 E-value=1.9e-14 Score=151.96 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=105.5
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|++|+|+++.+++.....+. .++|++|++++| .++......+ ..+++|+.|++++|..+. ...
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~--~~~---------- 97 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLR--SVD---------- 97 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCC--CCC----------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCcc--ccC----------
Confidence 4677888887777654433343 567888888877 4553222222 345778888888776331 110
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|++|++++|.+ +... +..+..+++|++|++++|.++ .+
T Consensus 98 ---------------------------~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~----~~ 144 (285)
T 1ozn_A 98 ---------------------------PATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNALQ----AL 144 (285)
T ss_dssp ---------------------------TTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CC
T ss_pred ---------------------------HHHhcCCcCCCEEECCCCcC-CEEC-HhHhhCCcCCCEEECCCCccc----cc
Confidence 01125567777777777766 3322 224556777777777777765 22
Q ss_pred h--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 245 S--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 245 ~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
. .+..+ ++|++|++++|.+++.....+..+++|++|++++|.+ ++ .. |. .+..+++|+.||+++|.
T Consensus 145 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~--~~---~~-----~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 145 PDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AH--VH---PH-----AFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CE--EC---TT-----TTTTCTTCCEEECCSSC
T ss_pred CHhHhccC-CCccEEECCCCcccccCHHHhcCccccCEEECCCCcc-cc--cC---Hh-----HccCcccccEeeCCCCc
Confidence 2 25555 5777777777766643334466677777777777765 21 00 11 24566777777777776
Q ss_pred CC
Q psy17257 323 LA 324 (778)
Q Consensus 323 l~ 324 (778)
+.
T Consensus 213 l~ 214 (285)
T 1ozn_A 213 LS 214 (285)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=160.23 Aligned_cols=136 Identities=21% Similarity=0.161 Sum_probs=103.8
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|..++... ...+..+++|+.|++++|.++ .++.+..+ ++|+.|+|++|.+++..+..+.++
T Consensus 157 ~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 157 NRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLR----EIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp TTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCS----SCCCCTTC-SSCCEEECTTSCCCEECTTTTTTC
T ss_pred hhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCc----cccccCCC-cccCEEECCCCccCccChhhhccC
Confidence 788999999999865423322 225678999999999999998 67777788 799999999999887667778899
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ +. . .+ ..+..+++|+.||+++|++.+-. . ... ...+
T Consensus 231 ~~L~~L~L~~n~l-~~---~--~~-----~~~~~l~~L~~L~L~~N~l~~~~--~-----------------~~~-~~l~ 279 (440)
T 3zyj_A 231 MHLQKLWMIQSQI-QV---I--ER-----NAFDNLQSLVEINLAHNNLTLLP--H-----------------DLF-TPLH 279 (440)
T ss_dssp TTCCEEECTTCCC-CE---E--CT-----TSSTTCTTCCEEECTTSCCCCCC--T-----------------TTT-SSCT
T ss_pred ccCCEEECCCCce-eE---E--Ch-----hhhcCCCCCCEEECCCCCCCccC--h-----------------hHh-cccc
Confidence 9999999999987 21 1 01 12678899999999999886321 1 123 2568
Q ss_pred cceEeeccccCCC
Q psy17257 356 PLEFLGLYGTKHG 368 (778)
Q Consensus 356 ~L~~L~L~~t~~~ 368 (778)
+|+.|.|.+|+..
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 8999999998854
No 10
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=4.9e-13 Score=143.22 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=137.6
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|+++++.+++- ..+. .++|++|++++| .+++... ...+++|+.|++++|.... .+
T Consensus 41 ~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~l~~---~~---------- 101 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNPLKN---VS---------- 101 (308)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCCCSC---CG----------
T ss_pred CCcCEEEeeCCCccCc--hhhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCcCCC---ch----------
Confidence 4799999999987752 2343 679999999998 5764322 3567899999999998642 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
.+ ..+++|+.|++++|.+ ++. + .+..+++|++|++++|.++ .+
T Consensus 102 ----------------------------~~-~~l~~L~~L~l~~n~l-~~~--~-~l~~l~~L~~L~l~~n~l~----~~ 144 (308)
T 1h6u_A 102 ----------------------------AI-AGLQSIKTLDLTSTQI-TDV--T-PLAGLSNLQVLYLDLNQIT----NI 144 (308)
T ss_dssp ----------------------------GG-TTCTTCCEEECTTSCC-CCC--G-GGTTCTTCCEEECCSSCCC----CC
T ss_pred ----------------------------hh-cCCCCCCEEECCCCCC-CCc--h-hhcCCCCCCEEECCCCccC----cC
Confidence 12 6678888999988888 442 2 3677888999999888887 56
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.+..+ ++|+.|++++|.+++-. .+..+++|++|++++|.+ ++ .+. +..+++|++||+++|.+.
T Consensus 145 ~~l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l-~~------~~~------l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 145 SPLAGL-TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI-SD------ISP------LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GGGGGC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC-CC------CGG------GGGCTTCCEEECTTSCCC
T ss_pred ccccCC-CCccEEEccCCcCCCCh--hhcCCCCCCEEECCCCcc-Cc------Chh------hcCCCCCCEEEccCCccC
Confidence 667777 68889998888876522 277888888999988887 21 111 577888889999888775
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+ ++.+ ...++|+.|.|.+|.+.
T Consensus 209 ~--------------------~~~l--~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 209 D--------------------VSPL--ANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp B--------------------CGGG--TTCTTCCEEEEEEEEEE
T ss_pred c--------------------cccc--cCCCCCCEEEccCCeee
Confidence 3 1223 25678888888888754
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.50 E-value=3e-14 Score=154.14 Aligned_cols=200 Identities=21% Similarity=0.177 Sum_probs=144.4
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHH-HHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLE-VLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~-~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++.-.-.....++|++|+|++| .++ .++ .+ ..+++|+.|+|++|.+. .++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~--~lp~~~-~~l~~L~~L~Ls~n~l~---~lp---------- 143 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLM--ELPDTM-QQFAGLETLTLARNPLR---ALP---------- 143 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCC--CCCSCG-GGGTTCSEEEEESCCCC---CCC----------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-Ccc--chhHHH-hccCCCCEEECCCCccc---cCc----------
Confidence 5789999999887622111223678999999988 565 232 23 34678999999998764 222
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHH--------hccCCCCCeEeccCcc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQL--------YRDMPHLTHLNLSKCM 236 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~--------~~~lp~L~~LdLS~~~ 236 (778)
..+..+++|+.|++++|.+ .+.....+ +..+++|++|++++|.
T Consensus 144 ----------------------------~~l~~l~~L~~L~L~~n~~-~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 144 ----------------------------ASIASLNRLRELSIRACPE-LTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp ----------------------------GGGGGCTTCCEEEEEEETT-CCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred ----------------------------HHHhcCcCCCEEECCCCCC-ccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence 1127789999999999876 23211111 3359999999999999
Q ss_pred ccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCE
Q psy17257 237 FLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVS 315 (778)
Q Consensus 237 i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~ 315 (778)
++ .++ .+..+ ++|++|++++|.+++ ++..+..+++|++|++++|... +.+ |. .+..+++|+.
T Consensus 195 l~----~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~---~~~---p~-----~~~~l~~L~~ 257 (328)
T 4fcg_A 195 IR----SLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL---RNY---PP-----IFGGRAPLKR 257 (328)
T ss_dssp CC----CCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC---CBC---CC-----CTTCCCCCCE
T ss_pred cC----cchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch---hhh---HH-----HhcCCCCCCE
Confidence 87 453 57788 799999999999874 5567889999999999999873 222 21 2678999999
Q ss_pred EeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 316 LDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 316 LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
|++++|++.+. +|..+ ...++|++|.|.+|...
T Consensus 258 L~L~~n~~~~~-------------------~p~~~-~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 258 LILKDCSNLLT-------------------LPLDI-HRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EECTTCTTCCB-------------------CCTTG-GGCTTCCEEECTTCTTC
T ss_pred EECCCCCchhh-------------------cchhh-hcCCCCCEEeCCCCCch
Confidence 99999987532 33334 36789999999998854
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=4e-14 Score=159.70 Aligned_cols=256 Identities=18% Similarity=0.183 Sum_probs=148.2
Q ss_pred hHhhccCCCCceeEEEeeCCccCHHHHHhhc------cCCccEEecCCCCCCCHhHHHHHH---hcCCCCceeecCCCCC
Q psy17257 77 VDTFLTKDITHMKSVKLRNAEVSDSGMQKLL------SHHVQELELIKCANVSQASLEVLN---MSSDQLYSLSLGPHCS 147 (778)
Q Consensus 77 ~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~------~~~L~~LdLs~~~~lt~~~l~~L~---~~~~~L~~L~Ls~c~~ 147 (778)
...|... ++|+.|+|++|.+++.++..+. .++|++|++++| .+++.....+. ..+++|++|++++|..
T Consensus 106 ~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 106 SSTLRTL--PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHTTSC--TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHccC--CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4455543 6999999999999988776543 347999999998 68876654333 3578999999999975
Q ss_pred CCccccchh-hhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHH----hc
Q psy17257 148 MFPDCLESE-VVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQL----YR 222 (778)
Q Consensus 148 ~~~~~~~~~-~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~----~~ 222 (778)
. ....... ..+....+..+.+.... ....+.-.......+..+++|++|++++|.+ ++.++..+ ..
T Consensus 183 ~-~~~~~~l~~~l~~~~~~L~~L~L~~-------n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 183 N-EAGVRVLCQGLKDSPCQLEALKLES-------CGVTSDNCRDLCGIVASKASLRELALGSNKL-GDVGMAELCPGLLH 253 (461)
T ss_dssp H-HHHHHHHHHHHHHSCCCCCEEECTT-------SCCBTTHHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHTS
T ss_pred c-hHHHHHHHHHHhcCCCCceEEEccC-------CCCcHHHHHHHHHHHHhCCCccEEeccCCcC-ChHHHHHHHHHHhc
Confidence 3 1111100 00000011111111100 0000000000122346778888888888887 65554322 23
Q ss_pred cCCCCCeEeccCccccCCcc--cc-hHHHhccccccEEEcCCCCCcchhhHhhc-----CCCCccEEeccCCCCCCCCCC
Q psy17257 223 DMPHLTHLNLSKCMFLFDNK--DL-SFLAEFKDTLVSLVLFNVSIVKDNLDHIC-----SLPLLRRLDISVSSDYPDYGN 294 (778)
Q Consensus 223 ~lp~L~~LdLS~~~i~~~~~--~l-~~L~~l~~~L~~L~L~~~~~~~~~~~~l~-----~L~~L~~LdLS~~~~~~~~g~ 294 (778)
.+++|++|++++|.++ +.+ .+ ..+..+ ++|++|++++|.+.+..+..+. ..++|++|++++|.+ ++.+
T Consensus 254 ~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~- 329 (461)
T 1z7x_W 254 PSSRLRTLWIWECGIT-AKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-TAAC- 329 (461)
T ss_dssp TTCCCCEEECTTSCCC-HHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BGGG-
T ss_pred CCCCceEEECcCCCCC-HHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC-chHH-
Confidence 5788888888888876 211 02 234556 6888888888887654443333 236888888888876 2211
Q ss_pred CCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 295 YSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 295 ~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
...+...+..+++|+.||+++|.+.+.++.. +...+....++|+.|.|.+|.+.
T Consensus 330 -----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~---------------l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 330 -----CSHFSSVLAQNRFLLELQISNNRLEDAGVRE---------------LCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp -----HHHHHHHHHHCSSCCEEECCSSBCHHHHHHH---------------HHHHHTSTTCCCCEEECTTSCCC
T ss_pred -----HHHHHHHHhhCCCccEEEccCCccccccHHH---------------HHHHHcCCCCceEEEECCCCCCC
Confidence 1234445677888888888888775443321 01111012467788888777643
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=4e-14 Score=159.86 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=105.1
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|..++.-. ...+..+++|+.|++++|.++ .++.+..+ ++|+.|+|++|.+++..+..+.++
T Consensus 168 ~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~----~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 168 NRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIK----DMPNLTPL-VGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCS----SCCCCTTC-TTCCEEECTTSCCSEECGGGGTTC
T ss_pred hcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccc----cccccccc-ccccEEECcCCcCcccCcccccCc
Confidence 788999999999865423322 225678999999999999998 66677788 799999999999987777789999
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ +. . .+. .+..+++|+.||+++|++.+- .. ... ...+
T Consensus 242 ~~L~~L~L~~n~l-~~---~--~~~-----~~~~l~~L~~L~L~~N~l~~~--~~-----------------~~~-~~l~ 290 (452)
T 3zyi_A 242 SSLKKLWVMNSQV-SL---I--ERN-----AFDGLASLVELNLAHNNLSSL--PH-----------------DLF-TPLR 290 (452)
T ss_dssp TTCCEEECTTSCC-CE---E--CTT-----TTTTCTTCCEEECCSSCCSCC--CT-----------------TSS-TTCT
T ss_pred cCCCEEEeCCCcC-ce---E--CHH-----HhcCCCCCCEEECCCCcCCcc--Ch-----------------HHh-cccc
Confidence 9999999999987 21 1 111 367899999999999988632 11 233 2568
Q ss_pred cceEeeccccCCC
Q psy17257 356 PLEFLGLYGTKHG 368 (778)
Q Consensus 356 ~L~~L~L~~t~~~ 368 (778)
+|+.|.|.+|+..
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 8999999998854
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=3.3e-14 Score=151.64 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ +.. ....+..+++|+.|++++|.++ +......+..+ ++|++|++++|.+++..+..+..+
T Consensus 123 ~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 123 LSLRNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNSFQ-ENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TTCTTCCEEECTTSCC-EEC-STTTTTTCTTCCEEECTTCEEG-GGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhccCCCEEECCCCcC-Ccc-chhhcccCcCCCEEECCCCccc-cccchhHHhhC-cCCCEEECCCCCcCCcCHHHhcCC
Confidence 7789999999999987 442 2336778999999999999987 21112346677 799999999999887667778899
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ ++.. +. .+..+++|+.||+++|.+.+.... .+. ...+
T Consensus 199 ~~L~~L~L~~N~l-~~~~-----~~-----~~~~l~~L~~L~L~~N~l~~~~~~------------------~~~-~~~~ 248 (306)
T 2z66_A 199 SSLQVLNMSHNNF-FSLD-----TF-----PYKCLNSLQVLDYSLNHIMTSKKQ------------------ELQ-HFPS 248 (306)
T ss_dssp TTCCEEECTTSCC-SBCC-----SG-----GGTTCTTCCEEECTTSCCCBCSSS------------------SCC-CCCT
T ss_pred CCCCEEECCCCcc-CccC-----hh-----hccCcccCCEeECCCCCCcccCHH------------------HHH-hhhc
Confidence 9999999999987 2111 10 257799999999999988642110 132 1224
Q ss_pred cceEeeccccCCC
Q psy17257 356 PLEFLGLYGTKHG 368 (778)
Q Consensus 356 ~L~~L~L~~t~~~ 368 (778)
+|++|.|.+|++.
T Consensus 249 ~L~~L~L~~N~~~ 261 (306)
T 2z66_A 249 SLAFLNLTQNDFA 261 (306)
T ss_dssp TCCEEECTTCCEE
T ss_pred cCCEEEccCCCee
Confidence 8999999998843
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=1.2e-13 Score=152.67 Aligned_cols=107 Identities=23% Similarity=0.140 Sum_probs=58.5
Q ss_pred CCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHH
Q psy17257 225 PHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLS 304 (778)
Q Consensus 225 p~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~ 304 (778)
++|+.|++++|.++ +++.+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+ +. + |.
T Consensus 226 ~~L~~L~l~~n~l~----~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~---~---~~---- 289 (390)
T 3o6n_A 226 VELTILKLQHNNLT----DTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VA---L---NL---- 289 (390)
T ss_dssp SSCCEEECCSSCCC----CCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CE---E---EC----
T ss_pred ccccEEECCCCCCc----ccHHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cc---c---Cc----
Confidence 44555555555554 33445555 4666666666665554455555666666666666655 10 0 10
Q ss_pred HHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCCC
Q psy17257 305 YIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGA 369 (778)
Q Consensus 305 ~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~~ 369 (778)
....+|+|+.||+++|.+. .+|.... ..++|+.|.|.+|.+..
T Consensus 290 -~~~~l~~L~~L~L~~n~l~--------------------~~~~~~~-~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 290 -YGQPIPTLKVLDLSHNHLL--------------------HVERNQP-QFDRLENLYLDHNSIVT 332 (390)
T ss_dssp -SSSCCTTCCEEECCSSCCC--------------------CCGGGHH-HHTTCSEEECCSSCCCC
T ss_pred -ccCCCCCCCEEECCCCcce--------------------ecCcccc-ccCcCCEEECCCCccce
Confidence 1244566666666666553 2232332 45778888888877553
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=5.9e-14 Score=148.23 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=146.0
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|+++.++......+. .++|++|++++|..++......+ ..+++|+.|++++|....
T Consensus 44 i~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~- 119 (285)
T 1ozn_A 44 ISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQE- 119 (285)
T ss_dssp CCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCCCC-
T ss_pred CCccCHHHcccC--CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcCCE-
Confidence 555444556543 6999999999998765444554 68999999999843554222223 357899999999998641
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
..+ ..+..+++|+.|++++|.+ +... ...+..+++|+.|
T Consensus 120 -~~~--------------------------------------~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L 158 (285)
T 1ozn_A 120 -LGP--------------------------------------GLFRGLAALQYLYLQDNAL-QALP-DDTFRDLGNLTHL 158 (285)
T ss_dssp -CCT--------------------------------------TTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEE
T ss_pred -ECH--------------------------------------hHhhCCcCCCEEECCCCcc-cccC-HhHhccCCCccEE
Confidence 111 1227789999999999998 5422 2256789999999
Q ss_pred eccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHh
Q psy17257 231 NLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIF 308 (778)
Q Consensus 231 dLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~ 308 (778)
++++|.++ .++ .+..+ ++|+.|++++|.+++..+..+.++++|++||+++|.+ ++ . +. ..+.
T Consensus 159 ~l~~n~l~----~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~---~---~~----~~~~ 222 (285)
T 1ozn_A 159 FLHGNRIS----SVPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SA---L---PT----EALA 222 (285)
T ss_dssp ECCSSCCC----EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC---C---CH----HHHT
T ss_pred ECCCCccc----ccCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-Cc---C---CH----HHcc
Confidence 99999987 443 37777 7999999999999877778889999999999999987 21 1 21 2468
Q ss_pred cCCCCCEEeecCCCCCCC
Q psy17257 309 KLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 309 ~lp~L~~LDLSgn~l~~~ 326 (778)
.+++|+.||+++|.+..+
T Consensus 223 ~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCTTCCEEECCSSCEECS
T ss_pred cCcccCEEeccCCCccCC
Confidence 899999999999998654
No 17
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=2.1e-13 Score=158.77 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=106.3
Q ss_pred CceeEEEeeCCccCHHHHHh-hc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCC----------CCCCCcccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQK-LL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGP----------HCSMFPDCL 153 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~-L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~----------c~~~~~~~~ 153 (778)
++|++|+|++|.+++.++.. +. +++|++|++++ .+++..+..+...+++|++|++++ |..++....
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 58899999988888887753 33 67899999883 477777777777788899999984 544432111
Q ss_pred chhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEecc
Q psy17257 154 ESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLS 233 (778)
Q Consensus 154 ~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS 233 (778)
. .+...+++|++|+++.+.+ ++..+..+...+++|++|+++
T Consensus 371 ~--------------------------------------~l~~~~~~L~~L~l~~~~l-~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 371 I--------------------------------------ALAQGCQELEYMAVYVSDI-TNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp H--------------------------------------HHHHHCTTCSEEEEEESCC-CHHHHHHHHHHCCSCCEEEEE
T ss_pred H--------------------------------------HHHhhCccCeEEEeecCCc-cHHHHHHHHhhCCCCcEEEEe
Confidence 1 1224456666666655555 555555444456666666664
Q ss_pred ----CccccCCc---ccchH-HHhccccccEEEcCCCC--CcchhhHhhc-CCCCccEEeccCCCCCCCCCCCCCCchhh
Q psy17257 234 ----KCMFLFDN---KDLSF-LAEFKDTLVSLVLFNVS--IVKDNLDHIC-SLPLLRRLDISVSSDYPDYGNYSPNPNDM 302 (778)
Q Consensus 234 ----~~~i~~~~---~~l~~-L~~l~~~L~~L~L~~~~--~~~~~~~~l~-~L~~L~~LdLS~~~~~~~~g~~~~~p~~~ 302 (778)
++.++ +. ..+.. +..+ ++|+.|++++|. +++..+..++ .+++|++|++++|.+ ++ ..
T Consensus 412 ~~~~~n~l~-~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l-~~---------~~ 479 (592)
T 3ogk_B 412 LLDREERIT-DLPLDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE-SD---------EG 479 (592)
T ss_dssp ECSCCSCCS-SCCCHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-SH---------HH
T ss_pred ecCCCcccc-CchHHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-CH---------HH
Confidence 33444 10 00211 3334 466666665433 3444443333 356666666666554 21 12
Q ss_pred HHHHHhcCCCCCEEeecCCCC
Q psy17257 303 LSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 303 L~~~~~~lp~L~~LDLSgn~l 323 (778)
+......+++|+.||+++|.+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCC
T ss_pred HHHHHhcCcccCeeeccCCCC
Confidence 223345566666666666654
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=2.9e-13 Score=152.42 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=43.4
Q ss_pred CCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHH
Q psy17257 225 PHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLS 304 (778)
Q Consensus 225 p~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~ 304 (778)
++|+.|++++|.++ +. ....+..+ ++|++|++++|.+.+..+..+.++++|++|++++|.+ +. . .|
T Consensus 275 ~~L~~L~l~~n~l~-~~-~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~---~--~~----- 340 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-AL-LKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GS---I--DS----- 340 (455)
T ss_dssp SCCCEEECCSSCCC-EE-CTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CE---E--CG-----
T ss_pred cCceEEEecCcccc-cc-chhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CC---c--Ch-----
Confidence 45555555555554 10 01224445 4666666666665554444555566666666666654 10 0 01
Q ss_pred HHHhcCCCCCEEeecCCCCC
Q psy17257 305 YIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 305 ~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+++|+.||+++|.+.
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCC
T ss_pred hHhcCcccCCEEECCCCccc
Confidence 02445556666666665553
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.3e-13 Score=161.40 Aligned_cols=106 Identities=24% Similarity=0.147 Sum_probs=55.8
Q ss_pred CCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHH
Q psy17257 226 HLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSY 305 (778)
Q Consensus 226 ~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~ 305 (778)
+|+.|++++|.++ ++..+..+ ++|+.|+|++|.+.+..+..++.+++|++|++++|.+ +. + |.
T Consensus 233 ~L~~L~L~~n~l~----~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~---l---~~----- 295 (597)
T 3oja_B 233 ELTILKLQHNNLT----DTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VA---L---NL----- 295 (597)
T ss_dssp CCCEEECCSSCCC----CCGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CE---E---EC-----
T ss_pred CCCEEECCCCCCC----CChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CC---C---Cc-----
Confidence 4444455555444 33344555 4566666666665554455555566666666666554 10 1 10
Q ss_pred HHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCCC
Q psy17257 306 IIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGA 369 (778)
Q Consensus 306 ~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~~ 369 (778)
....+|+|+.||+++|.+. .+|..+. ..++|++|.|.+|.+..
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~--------------------~i~~~~~-~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL--------------------HVERNQP-QFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC--------------------CCGGGHH-HHTTCSEEECCSSCCCC
T ss_pred ccccCCCCcEEECCCCCCC--------------------ccCcccc-cCCCCCEEECCCCCCCC
Confidence 1234556666666666543 2333332 45677777777777543
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=1.2e-13 Score=166.39 Aligned_cols=241 Identities=18% Similarity=0.155 Sum_probs=159.1
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|++|.+++.....+. .++|++|++++| .+++.....+ ..+++|+.|++++|....
T Consensus 406 l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~L~~N~l~~- 480 (768)
T 3rgz_A 406 FTGKIPPTLSNC--SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQEL-MYVKTLETLILDFNDLTG- 480 (768)
T ss_dssp EEEECCGGGGGC--TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGG-GGCTTCCEEECCSSCCCS-
T ss_pred cccccCHHHhcC--CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHH-cCCCCceEEEecCCcccC-
Confidence 444445556544 6899999999987754444454 578999999998 4654322233 356899999999998751
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
..+... . .++..+.+.. +.+...|.++ ..+..+++|+.|++++|.+ ++. ++..+..+++|+.|
T Consensus 481 -~~p~~l--~-~l~~L~~L~L-------~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l-~~~-~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 481 -EIPSGL--S-NCTNLNWISL-------SNNRLTGEIP----KWIGRLENLAILKLSNNSF-SGN-IPAELGDCRSLIWL 543 (768)
T ss_dssp -CCCGGG--G-GCTTCCEEEC-------CSSCCCSCCC----GGGGGCTTCCEEECCSSCC-EEE-CCGGGGGCTTCCEE
T ss_pred -cCCHHH--h-cCCCCCEEEc-------cCCccCCcCC----hHHhcCCCCCEEECCCCcc-cCc-CCHHHcCCCCCCEE
Confidence 121100 0 1111111111 1122222222 2347889999999999988 543 33467789999999
Q ss_pred eccCccccCCcccchH----------------------------------------------------------------
Q psy17257 231 NLSKCMFLFDNKDLSF---------------------------------------------------------------- 246 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~---------------------------------------------------------------- 246 (778)
|+++|.++ +.. ...
T Consensus 544 ~Ls~N~l~-g~i-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 544 DLNTNLFN-GTI-PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp ECCSSEEE-SBC-CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred ECCCCccC-CcC-ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 99998876 311 000
Q ss_pred ------HHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecC
Q psy17257 247 ------LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISG 320 (778)
Q Consensus 247 ------L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSg 320 (778)
+..+ ++|+.|+|++|++++.++..++++++|+.||+|+|.+ + |.+ |. .+..+++|+.||+|+
T Consensus 622 g~~~~~~~~l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l-~--g~i---p~-----~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 622 GHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-S--GSI---PD-----EVGDLRGLNILDLSS 689 (768)
T ss_dssp EECCCSCSSS-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC-C--SCC---CG-----GGGGCTTCCEEECCS
T ss_pred ccCchhhhcc-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc-C--CCC---Ch-----HHhCCCCCCEEECCC
Confidence 1223 4788899999999888888899999999999999987 2 333 32 378899999999999
Q ss_pred CCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 321 TNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 321 n~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
|++.+. ||..+. ..+.|++|.|.+|++.
T Consensus 690 N~l~g~-------------------ip~~l~-~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 690 NKLDGR-------------------IPQAMS-ALTMLTEIDLSNNNLS 717 (768)
T ss_dssp SCCEEC-------------------CCGGGG-GCCCCSEEECCSSEEE
T ss_pred CcccCc-------------------CChHHh-CCCCCCEEECcCCccc
Confidence 987632 444443 6678999999888754
No 21
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=7.7e-14 Score=149.43 Aligned_cols=229 Identities=16% Similarity=0.051 Sum_probs=119.0
Q ss_pred CceeEEEeeCCccCHHHHHhh----ccCCccEEecCCCCCCCHhHHHHHH-hcCCCCceeecCCCCCCCccccchhhhhc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKL----LSHHVQELELIKCANVSQASLEVLN-MSSDQLYSLSLGPHCSMFPDCLESEVVVG 160 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L----~~~~L~~LdLs~~~~lt~~~l~~L~-~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~ 160 (778)
..++.+.++++.+++..+..+ ...+|++|++++| .+++.....+. ...++|+.|+|++|...............
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 357777777777776655422 2456888888777 45432222221 34567777787777664210000000000
Q ss_pred cccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHH--HhccCCCCCeEeccCcccc
Q psy17257 161 EKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQ--LYRDMPHLTHLNLSKCMFL 238 (778)
Q Consensus 161 e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~--~~~~lp~L~~LdLS~~~i~ 238 (778)
.++..+.+... .+...+. ....+..+++|++|++++|.+.+..++.. ....+++|++|++++|.++
T Consensus 143 -~~~~L~~L~Ls-------~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 143 -LKPGLKVLSIA-------QAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp -BCSCCCEEEEE-------CCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred -hccCCCEEEee-------CCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 01110111000 0000000 01122566777777777777622222221 1245777777777777776
Q ss_pred CCcccchH-----HHhccccccEEEcCCCCCcchhhHhhcCC---CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 239 FDNKDLSF-----LAEFKDTLVSLVLFNVSIVKDNLDHICSL---PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 239 ~~~~~l~~-----L~~l~~~L~~L~L~~~~~~~~~~~~l~~L---~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
.++. +..+ ++|++|+|++|.+.+..+..+..+ ++|++|++++|.+ + .+ |. ...
T Consensus 211 ----~l~~~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~---~l---p~-------~~~ 271 (310)
T 4glp_A 211 ----TPTGVCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL-E---QV---PK-------GLP 271 (310)
T ss_dssp ----CHHHHHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC-C---SC---CS-------CCC
T ss_pred ----chHHHHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC-C---ch---hh-------hhc
Confidence 3332 2455 577777777777765444444444 5777777777776 2 11 21 112
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
++|+.||+++|++.+ +|.+ ...++|+.|.|.++.+.
T Consensus 272 ~~L~~L~Ls~N~l~~--------------------~~~~--~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 AKLRVLDLSSNRLNR--------------------APQP--DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCSCEECCSCCCCS--------------------CCCT--TSCCCCSCEECSSTTTS
T ss_pred CCCCEEECCCCcCCC--------------------Cchh--hhCCCccEEECcCCCCC
Confidence 677777777776642 2222 24577888888887754
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=3e-14 Score=152.98 Aligned_cols=225 Identities=16% Similarity=0.101 Sum_probs=134.7
Q ss_pred CceeEEEeeCCccCH--HHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC--Cccccchhhhhc
Q psy17257 86 THMKSVKLRNAEVSD--SGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM--FPDCLESEVVVG 160 (778)
Q Consensus 86 ~~L~~L~L~~~~isd--~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~--~~~~~~~~~~l~ 160 (778)
.+++.|+|+++.+++ .....+. .++|++|++++++.+++.....+ ..+++|++|++++|... .+..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~------ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLS------ 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGG------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHh------
Confidence 478889998888775 3334443 57888999885324543222233 34678888988888764 111111
Q ss_pred cccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCC-CCCeEeccCccccC
Q psy17257 161 EKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMP-HLTHLNLSKCMFLF 239 (778)
Q Consensus 161 e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp-~L~~LdLS~~~i~~ 239 (778)
..+..+.+... .+...+.+ +..+..+++|++|++++|.+ ++.. +..+..++ +|+.|++++|.++
T Consensus 123 -~l~~L~~L~Ls-------~N~l~~~~----p~~~~~l~~L~~L~L~~N~l-~~~~-p~~l~~l~~~L~~L~L~~N~l~- 187 (313)
T 1ogq_A 123 -QIKTLVTLDFS-------YNALSGTL----PPSISSLPNLVGITFDGNRI-SGAI-PDSYGSFSKLFTSMTISRNRLT- 187 (313)
T ss_dssp -GCTTCCEEECC-------SSEEESCC----CGGGGGCTTCCEEECCSSCC-EEEC-CGGGGCCCTTCCEEECCSSEEE-
T ss_pred -CCCCCCEEeCC-------CCccCCcC----ChHHhcCCCCCeEECcCCcc-cCcC-CHHHhhhhhcCcEEECcCCeee-
Confidence 01111111110 01111111 12236778888888888877 4322 22455666 7888888888776
Q ss_pred CcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeec
Q psy17257 240 DNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDIS 319 (778)
Q Consensus 240 ~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLS 319 (778)
+. ....+..+ + |+.|++++|.+.+..+..+..+++|++|++++|.+ + +.. | .+..+++|+.||++
T Consensus 188 ~~-~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~--~~~---~------~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 188 GK-IPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-A--FDL---G------KVGLSKNLNGLDLR 252 (313)
T ss_dssp EE-CCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-C--CBG---G------GCCCCTTCCEEECC
T ss_pred cc-CChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-e--eec---C------cccccCCCCEEECc
Confidence 22 12345565 3 88888888877766666777888888888888876 2 111 1 14567888888888
Q ss_pred CCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 320 GTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 320 gn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
+|.+.+. +|..+. ..++|++|.|.+|.+
T Consensus 253 ~N~l~~~-------------------~p~~l~-~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 253 NNRIYGT-------------------LPQGLT-QLKFLHSLNVSFNNL 280 (313)
T ss_dssp SSCCEEC-------------------CCGGGG-GCTTCCEEECCSSEE
T ss_pred CCcccCc-------------------CChHHh-cCcCCCEEECcCCcc
Confidence 8876421 233332 567788888887764
No 23
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2e-13 Score=149.62 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=153.8
Q ss_pred HhhccCCCCceeEEEeeCCccCHHHHHhhc------cCCccEEecCCCCCCCHhHHHHHH---hcC-CCCceeecCCCCC
Q psy17257 78 DTFLTKDITHMKSVKLRNAEVSDSGMQKLL------SHHVQELELIKCANVSQASLEVLN---MSS-DQLYSLSLGPHCS 147 (778)
Q Consensus 78 ~~f~~~~~~~L~~L~L~~~~isd~~l~~L~------~~~L~~LdLs~~~~lt~~~l~~L~---~~~-~~L~~L~Ls~c~~ 147 (778)
..|.... .+|++|+|++|.+++.+...+. .++|++|+|++| .+++.....++ ... ++|+.|+|++|..
T Consensus 44 ~~l~~~~-~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 44 QAFANTP-ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHHTCC-TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCC-CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 5555431 2899999999999877665443 289999999999 58765554333 233 7999999999986
Q ss_pred CCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhc-CCCccEEEecCCcccChhH---HHHHhcc
Q psy17257 148 MFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILK-APKLRRFSLIGHTLMSQSI---CTQLYRD 223 (778)
Q Consensus 148 ~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~-l~~L~~L~Ls~~~l~s~~~---l~~~~~~ 223 (778)
. +.... .+ ...+.. .++|++|++++|.+ ++.+ +...+..
T Consensus 122 ~--~~~~~--~l--------------------------------~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 122 S--SKSSS--EF--------------------------------KQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAA 164 (362)
T ss_dssp G--GSCHH--HH--------------------------------HHHHTTSCTTCCEEECTTSCG-GGSCHHHHHHHHHT
T ss_pred C--cHHHH--HH--------------------------------HHHHHhCCCceeEEEccCCcC-CHHHHHHHHHHHhc
Confidence 4 11110 00 011244 46999999999998 6543 3444556
Q ss_pred CC-CCCeEeccCccccCCcccch----HHHhccccccEEEcCCCCCcch----hhHhhcC-CCCccEEeccCCCCCCCCC
Q psy17257 224 MP-HLTHLNLSKCMFLFDNKDLS----FLAEFKDTLVSLVLFNVSIVKD----NLDHICS-LPLLRRLDISVSSDYPDYG 293 (778)
Q Consensus 224 lp-~L~~LdLS~~~i~~~~~~l~----~L~~l~~~L~~L~L~~~~~~~~----~~~~l~~-L~~L~~LdLS~~~~~~~~g 293 (778)
++ +|++|++++|.++ +.+ .. .+..+.++|++|+|++|.+++. +...+.. .++|++||+++|.+ ++.
T Consensus 165 ~~~~L~~L~Ls~n~l~-~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~- 240 (362)
T 3goz_A 165 IPANVNSLNLRGNNLA-SKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGP- 240 (362)
T ss_dssp SCTTCCEEECTTSCGG-GSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCC-
T ss_pred CCccccEeeecCCCCc-hhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcH-
Confidence 66 9999999999997 321 22 2344423899999999998763 4445555 46999999999987 322
Q ss_pred CCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 294 NYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 294 ~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+.+.+......+++|+.|++++|.+.+-.... ...++.-. ...++|+.|++.++.+.
T Consensus 241 -----~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~------------~~~l~~~~-~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 -----SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ------------CKALGAAF-PNIQKIILVDKNGKEIH 297 (362)
T ss_dssp -----CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH------------HHHHHTTS-TTCCEEEEECTTSCBCC
T ss_pred -----HHHHHHHHHhcCCCccEEEeccCCccccCHHH------------HHHHHHHh-ccCCceEEEecCCCcCC
Confidence 22445555788999999999999843221100 01111122 24577999999998854
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=1.1e-12 Score=142.27 Aligned_cols=213 Identities=16% Similarity=0.144 Sum_probs=142.5
Q ss_pred CCceeEEEeeCCc-cCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 85 ITHMKSVKLRNAE-VSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 85 ~~~L~~L~L~~~~-isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
.++|+.|++++|. +++. ..+. .++|++|++++| .+++... + ..+++|+.|++++|......... .
T Consensus 131 l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~-~~~~~~~--~-~~l~~L~~L~l~~n~l~~~~~~~-------~ 197 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTES-KVKDVTP--I-ANLTDLYSLSLNYNQIEDISPLA-------S 197 (347)
T ss_dssp CTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSS-CCCCCGG--G-GGCTTCSEEECTTSCCCCCGGGG-------G
T ss_pred CCceeEEECCCCCCcccc--cchhhCCCCcEEEecCC-CcCCchh--h-ccCCCCCEEEccCCccccccccc-------C
Confidence 3689999999985 4321 1233 678999999998 4554221 3 46789999999999765211111 0
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNK 242 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~ 242 (778)
.+..+.+... .+...+ + .. +..+++|+.|++++|.+ ++... +..+++|+.|++++|.++
T Consensus 198 l~~L~~L~l~-------~n~l~~-~----~~-~~~~~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~l~~n~l~---- 256 (347)
T 4fmz_A 198 LTSLHYFTAY-------VNQITD-I----TP-VANMTRLNSLKIGNNKI-TDLSP---LANLSQLTWLEIGTNQIS---- 256 (347)
T ss_dssp CTTCCEEECC-------SSCCCC-C----GG-GGGCTTCCEEECCSSCC-CCCGG---GTTCTTCCEEECCSSCCC----
T ss_pred CCccceeecc-------cCCCCC-C----ch-hhcCCcCCEEEccCCcc-CCCcc---hhcCCCCCEEECCCCccC----
Confidence 1110111000 000011 0 11 37889999999999988 54322 678999999999999988
Q ss_pred cchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 243 DLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 243 ~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
.++.+..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+ ++ .....+..+++|+.|++++|+
T Consensus 257 ~~~~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l-~~----------~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 257 DINAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQL-GN----------EDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-CG----------GGHHHHHTCTTCSEEECCSSS
T ss_pred CChhHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcC-CC----------cChhHhhccccCCEEEccCCc
Confidence 56677777 7999999999988753 4577889999999999987 21 111236789999999999998
Q ss_pred CCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 323 LAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 323 l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
+.+ ++.+ ...++|++|.+.+|.+
T Consensus 323 l~~--------------------~~~~--~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 323 ITD--------------------IRPL--ASLSKMDSADFANQVI 345 (347)
T ss_dssp CCC--------------------CGGG--GGCTTCSEESSSCC--
T ss_pred ccc--------------------ccCh--hhhhccceeehhhhcc
Confidence 753 1223 2568899999998874
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=9.8e-14 Score=148.02 Aligned_cols=206 Identities=16% Similarity=0.115 Sum_probs=150.4
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhH--HHHHHhcCCCCceeecCCCCCCCccccchhhhhccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQAS--LEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEK 162 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~--l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~ 162 (778)
.+|++|+|+++.++......+. .++|++|++++| .++... ...+. .+++|+.|++++|... ..+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~L~~L~Ls~n~i~---~l~-------- 94 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-GTTSLKYLDLSFNGVI---TMS-------- 94 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-SCSCCCEEECCSCSEE---EEE--------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccc-cccccCEEECCCCccc---cCh--------
Confidence 4799999999998753333443 678999999998 576432 12232 4789999999999763 111
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNK 242 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~ 242 (778)
..+ ..+++|++|++++|.+ ++......+..+++|++|++++|.+. +.
T Consensus 95 -----------------------------~~~-~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~-~~- 141 (306)
T 2z66_A 95 -----------------------------SNF-LGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR-VA- 141 (306)
T ss_dssp -----------------------------EEE-ETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCE-EC-
T ss_pred -----------------------------hhc-CCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCC-cc-
Confidence 012 6789999999999988 44332236778999999999999987 21
Q ss_pred cchHHHhccccccEEEcCCCCCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 243 DLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 243 ~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
....+..+ ++|++|++++|.+.+ ..+..+..+++|++||+++|.+ ++ . .|. .+..+++|+.|++++|
T Consensus 142 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~--~---~~~-----~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 142 FNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQ--L---SPT-----AFNSLSSLQVLNMSHN 209 (306)
T ss_dssp STTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CE--E---CTT-----TTTTCTTCCEEECTTS
T ss_pred chhhcccC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc-CC--c---CHH-----HhcCCCCCCEEECCCC
Confidence 12346677 799999999999876 4566788999999999999987 21 1 111 3678999999999999
Q ss_pred CCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCCC
Q psy17257 322 NLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGA 369 (778)
Q Consensus 322 ~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~~ 369 (778)
.+.+... . .+ ...++|++|.|.+|.+..
T Consensus 210 ~l~~~~~--~----------------~~--~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 210 NFFSLDT--F----------------PY--KCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CCSBCCS--G----------------GG--TTCTTCCEEECTTSCCCB
T ss_pred ccCccCh--h----------------hc--cCcccCCEeECCCCCCcc
Confidence 8864211 0 13 256889999999998653
No 26
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=3.6e-13 Score=156.82 Aligned_cols=209 Identities=17% Similarity=0.220 Sum_probs=136.3
Q ss_pred CceeEEEeeCCccCHHHHHhh--ccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCC--------CCCccccch
Q psy17257 86 THMKSVKLRNAEVSDSGMQKL--LSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHC--------SMFPDCLES 155 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L--~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~--------~~~~~~~~~ 155 (778)
++|++|+|++|.+++.++..+ .+++|++|++++| +++.++..++..+++|+.|++++|. .++...
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~--- 363 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG--- 363 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH---
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH---
Confidence 578888888888888777643 2678888888887 6666777777677888888885542 111100
Q ss_pred hhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEecc--
Q psy17257 156 EVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLS-- 233 (778)
Q Consensus 156 ~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS-- 233 (778)
+ ..+...+++|+.|.++.+.+ ++.++..+...+|+|+.|+++
T Consensus 364 -------------------l----------------~~l~~~~~~L~~L~~~~~~l-~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 364 -------------------L----------------VSVSMGCPKLESVLYFCRQM-TNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp -------------------H----------------HHHHHHCTTCCEEEEEESCC-CHHHHHHHHHHCTTCCEEEEEES
T ss_pred -------------------H----------------HHHHHhchhHHHHHHhcCCc-CHHHHHHHHhhCCCcceeEeecc
Confidence 0 12334578888887777777 777777666678888888888
Q ss_pred C----ccccCCc---ccchH-HHhccccccEEEcCCCCCcchhhHhhcC-CCCccEEeccCCCCCCCCCCCCCCchhhHH
Q psy17257 234 K----CMFLFDN---KDLSF-LAEFKDTLVSLVLFNVSIVKDNLDHICS-LPLLRRLDISVSSDYPDYGNYSPNPNDMLS 304 (778)
Q Consensus 234 ~----~~i~~~~---~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~~l~~-L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~ 304 (778)
+ +.++ +. ..+.. +..+ ++|+.|++++ .+++..+..++. +++|++|++++|.+ ++ ..+.
T Consensus 408 ~~~~~~~l~-~~~~~~~~~~l~~~~-~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i-~~---------~~~~ 474 (594)
T 2p1m_B 408 EPKAPDYLT-LEPLDIGFGAIVEHC-KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD-SD---------LGMH 474 (594)
T ss_dssp STTCCCTTT-CCCTHHHHHHHHHHC-TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS-SH---------HHHH
T ss_pred cCCCccccc-CCchhhHHHHHHhhC-CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC-cH---------HHHH
Confidence 2 3343 10 01222 4455 6888888876 666666666655 78888888888875 22 2233
Q ss_pred HHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 305 YIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 305 ~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
.+...+|+|+.|++++|.+.+.++. .+.. ..++|++|.+.+|+.
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~------------------~~~~-~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALL------------------ANAS-KLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHH------------------HTGG-GGGGSSEEEEESSCC
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHH------------------HHHH-hCCCCCEEeeeCCCC
Confidence 3346688888888888887322221 2332 457788888888874
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=4.8e-14 Score=151.42 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=99.9
Q ss_pred hcCC-CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAP-KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~-~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
..++ +|+.|++++|.+ ++.. +..+..++ |+.|++++|.++ +. ....+..+ ++|+.|++++|.++...+. +..
T Consensus 170 ~~l~~~L~~L~L~~N~l-~~~~-~~~~~~l~-L~~L~Ls~N~l~-~~-~~~~~~~l-~~L~~L~L~~N~l~~~~~~-~~~ 242 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRL-TGKI-PPTFANLN-LAFVDLSRNMLE-GD-ASVLFGSD-KNTQKIHLAKNSLAFDLGK-VGL 242 (313)
T ss_dssp GCCCTTCCEEECCSSEE-EEEC-CGGGGGCC-CSEEECCSSEEE-EC-CGGGCCTT-SCCSEEECCSSEECCBGGG-CCC
T ss_pred hhhhhcCcEEECcCCee-eccC-ChHHhCCc-ccEEECcCCccc-Cc-CCHHHhcC-CCCCEEECCCCceeeecCc-ccc
Confidence 6676 999999999998 5433 33566676 999999999987 32 23346677 7999999999998754443 788
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVD 354 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~ 354 (778)
+++|++||+++|.+ + |.. |. .+..+++|+.||+++|++.+. +|.. ...
T Consensus 243 l~~L~~L~Ls~N~l-~--~~~---p~-----~l~~l~~L~~L~Ls~N~l~~~-------------------ip~~--~~l 290 (313)
T 1ogq_A 243 SKNLNGLDLRNNRI-Y--GTL---PQ-----GLTQLKFLHSLNVSFNNLCGE-------------------IPQG--GNL 290 (313)
T ss_dssp CTTCCEEECCSSCC-E--ECC---CG-----GGGGCTTCCEEECCSSEEEEE-------------------CCCS--TTG
T ss_pred cCCCCEEECcCCcc-c--CcC---Ch-----HHhcCcCCCEEECcCCccccc-------------------CCCC--ccc
Confidence 99999999999997 2 222 32 368899999999999987532 3344 256
Q ss_pred ccceEeeccccC
Q psy17257 355 RPLEFLGLYGTK 366 (778)
Q Consensus 355 ~~L~~L~L~~t~ 366 (778)
++|+.+.+.+++
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T 1ogq_A 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred cccChHHhcCCC
Confidence 788999998887
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.43 E-value=5.7e-13 Score=143.70 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=58.9
Q ss_pred hcCCCccEEEecCCcccChh-HHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQS-ICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~-~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
..+++|+.|++++|.+ +.. .....+..+++|+.|++++|.++ .++.-. . ++|++|++++|.+.+..+..+..
T Consensus 142 ~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~----~l~~~~-~-~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 142 NGLNQMIVVELGTNPL-KSSGIENGAFQGMKKLSYIRIADTNIT----TIPQGL-P-PSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp TTCTTCCEEECCSSCC-CGGGBCTTGGGGCTTCCEEECCSSCCC----SCCSSC-C-TTCSEEECTTSCCCEECTGGGTT
T ss_pred cCCccccEEECCCCcC-CccCcChhhccCCCCcCEEECCCCccc----cCCccc-c-ccCCEEECCCCcCCccCHHHhcC
Confidence 5666666666666665 321 11224455666666666666665 232110 1 45666666666665544455566
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+++|++|++++|.+ ++ . + +. .+..+++|+.||+++|.+.
T Consensus 215 l~~L~~L~Ls~n~l-~~---~-~-~~-----~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 215 LNNLAKLGLSFNSI-SA---V-D-NG-----SLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CTTCCEEECCSSCC-CE---E-C-TT-----TGGGSTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcC-ce---e-C-hh-----hccCCCCCCEEECCCCcCc
Confidence 66666666666655 11 0 0 00 1445666666666666543
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=2.2e-12 Score=139.81 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=103.1
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
++|++|++++|.+++... .-..++|++|++++| .+++- ..+ ..+++|++|++++|......... .++.
T Consensus 66 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~--~~~-~~l~~L~~L~l~~n~i~~~~~~~-------~l~~ 133 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDI--SAL-QNLTNLRELYLNEDNISDISPLA-------NLTK 133 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCC--GGG-TTCTTCSEEECTTSCCCCCGGGT-------TCTT
T ss_pred CCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCc--hHH-cCCCcCCEEECcCCcccCchhhc-------cCCc
Confidence 578888888888765332 122577888888887 46542 222 45678888888888764211110 1111
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
.+.+.... +...+.+ .. +..+++|+.|++++|.+ .+.. .+..+++|+.|++++|.+. .+.
T Consensus 134 L~~L~l~~-------n~~~~~~----~~-~~~l~~L~~L~l~~~~~-~~~~---~~~~l~~L~~L~l~~n~l~----~~~ 193 (347)
T 4fmz_A 134 MYSLNLGA-------NHNLSDL----SP-LSNMTGLNYLTVTESKV-KDVT---PIANLTDLYSLSLNYNQIE----DIS 193 (347)
T ss_dssp CCEEECTT-------CTTCCCC----GG-GTTCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECTTSCCC----CCG
T ss_pred eeEEECCC-------CCCcccc----cc-hhhCCCCcEEEecCCCc-CCch---hhccCCCCCEEEccCCccc----ccc
Confidence 11111110 0000000 11 25666777777776666 3321 1456667777777766665 444
Q ss_pred HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
.+..+ ++|+.|.++++.+.+... +..+++|++|++++|.+ ++ .+. +..+++|+.|++++|.+.
T Consensus 194 ~~~~l-~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l-~~------~~~------~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 194 PLASL-TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI-TD------LSP------LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp GGGGC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-CC------CGG------GTTCTTCCEEECCSSCCC
T ss_pred cccCC-CccceeecccCCCCCCch--hhcCCcCCEEEccCCcc-CC------Ccc------hhcCCCCCEEECCCCccC
Confidence 45555 566666666666554222 55666666666666665 11 110 455666666666666554
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=3.1e-13 Score=144.86 Aligned_cols=200 Identities=20% Similarity=0.107 Sum_probs=143.7
Q ss_pred CceeEEEeeCCccCHHHHHhh--c-cCCccEEecCCCCCCCHh--HHHHHHh-cCCCCceeecCCCCCCCccccchhhhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKL--L-SHHVQELELIKCANVSQA--SLEVLNM-SSDQLYSLSLGPHCSMFPDCLESEVVV 159 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L--~-~~~L~~LdLs~~~~lt~~--~l~~L~~-~~~~L~~L~Ls~c~~~~~~~~~~~~~l 159 (778)
++|++|+|++|.+++.....+ . .++|++|++++| .+++. .+..+.. ..++|++|++++|.... .+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~---~~----- 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLN---FS----- 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC---CC-----
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc---ch-----
Confidence 689999999999876544432 3 678999999998 56653 2333321 23799999999998742 11
Q ss_pred ccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChh-HHHHHh--ccCCCCCeEeccCcc
Q psy17257 160 GEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQS-ICTQLY--RDMPHLTHLNLSKCM 236 (778)
Q Consensus 160 ~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~-~l~~~~--~~lp~L~~LdLS~~~ 236 (778)
...+..+++|+.|++++|.+ .+. ++.... ..+++|++|++++|.
T Consensus 166 --------------------------------~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 166 --------------------------------CEQVRVFPALSTLDLSDNPE-LGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp --------------------------------TTTCCCCSSCCEEECCSCTT-CHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred --------------------------------HHHhccCCCCCEEECCCCCc-CcchHHHHHHHhccCCCCCEEECCCCc
Confidence 01126789999999999997 442 333233 789999999999999
Q ss_pred ccCCcccchH-----HHhccccccEEEcCCCCCcchhh-HhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 237 FLFDNKDLSF-----LAEFKDTLVSLVLFNVSIVKDNL-DHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 237 i~~~~~~l~~-----L~~l~~~L~~L~L~~~~~~~~~~-~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
++ .++. +..+ ++|+.|++++|.+.+..+ ..+..+++|++||+++|.+ + .+ |. .+.
T Consensus 213 l~----~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~---~i---p~-----~~~-- 273 (312)
T 1wwl_A 213 ME----TPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-K---QV---PK-----GLP-- 273 (312)
T ss_dssp CC----CHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-S---SC---CS-----SCC--
T ss_pred Cc----chHHHHHHHHhcC-CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-C---hh---hh-----hcc--
Confidence 87 3332 2355 699999999999887543 4456789999999999997 2 12 21 122
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
++|+.||+++|++.+ +|.+ ...++|++|.|.++++.
T Consensus 274 ~~L~~L~Ls~N~l~~--------------------~p~~--~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDR--------------------NPSP--DELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCS--------------------CCCT--TTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCC--------------------ChhH--hhCCCCCEEeccCCCCC
Confidence 799999999998753 2333 25688999999998854
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.42 E-value=3.7e-13 Score=162.23 Aligned_cols=171 Identities=16% Similarity=0.107 Sum_probs=92.6
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....+......+|+.|++++|.+++.....+. .++|++|++++| .+++.....+ ..+++|+.|++++|...
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l-~~l~~L~~L~L~~n~l~-- 455 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSL-GSLSKLRDLKLWLNMLE-- 455 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSSCCC--
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHH-hcCCCCCEEECCCCccc--
Confidence 444444444332246899999999998765444554 689999999998 5654322334 35789999999999875
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
+..+... . .++..+.+.. +.+...|.++ ..+..+++|+.|++++|.+ ++. ++..+..+++|+.|
T Consensus 456 ~~~p~~~--~-~l~~L~~L~L-------~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l-~~~-~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 456 GEIPQEL--M-YVKTLETLIL-------DFNDLTGEIP----SGLSNCTNLNWISLSNNRL-TGE-IPKWIGRLENLAIL 519 (768)
T ss_dssp SCCCGGG--G-GCTTCCEEEC-------CSSCCCSCCC----GGGGGCTTCCEEECCSSCC-CSC-CCGGGGGCTTCCEE
T ss_pred CcCCHHH--c-CCCCceEEEe-------cCCcccCcCC----HHHhcCCCCCEEEccCCcc-CCc-CChHHhcCCCCCEE
Confidence 2222100 0 0011011110 0111122111 1225566666666666665 332 22245556666666
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCc
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~ 265 (778)
++++|.++ +. ....+..+ ++|+.|++++|.++
T Consensus 520 ~L~~N~l~-~~-~p~~l~~l-~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 520 KLSNNSFS-GN-IPAELGDC-RSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCE-EE-CCGGGGGC-TTCCEEECCSSEEE
T ss_pred ECCCCccc-Cc-CCHHHcCC-CCCCEEECCCCccC
Confidence 66666665 21 12335555 56666666666544
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=4.2e-13 Score=140.69 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=133.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.++++|+|+++.++......+. .++|++|++++| .++.-. ......+++|+.|++++|.... .+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~-~~~~~~l~~L~~L~l~~n~l~~---~~---------- 101 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLP-AGIFKELKNLETLWVTDNKLQA---LP---------- 101 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCC-TTTTSSCTTCCEEECCSSCCCC---CC----------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeC-hhhhcCCCCCCEEECCCCcCCc---CC----------
Confidence 4789999999887754433443 578999999998 465311 1222457899999999987641 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|+.|++++|.+ +... ...+..+++|++|++++|.++ .+
T Consensus 102 ---------------------------~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~Ls~n~l~----~~ 148 (270)
T 2o6q_A 102 ---------------------------IGVFDQLVNLAELRLDRNQL-KSLP-PRVFDSLTKLTYLSLGYNELQ----SL 148 (270)
T ss_dssp ---------------------------TTTTTTCSSCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CC
T ss_pred ---------------------------HhHcccccCCCEEECCCCcc-CeeC-HHHhCcCcCCCEEECCCCcCC----cc
Confidence 01226789999999999998 5433 235678999999999999987 34
Q ss_pred h--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 245 S--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 245 ~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
+ .+..+ ++|+.|++++|.++......+.++++|++|++++|.+ +. + |. ..+..+++|+.|++++|.
T Consensus 149 ~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~---~---~~----~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 149 PKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KR---V---PE----GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC-SC---C---CT----TTTTTCTTCCEEECCSSC
T ss_pred CHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC-Cc---C---CH----HHhccccCCCEEEecCCC
Confidence 3 36777 7999999999998765555678899999999999987 21 1 11 125779999999999998
Q ss_pred CCCC
Q psy17257 323 LAGR 326 (778)
Q Consensus 323 l~~~ 326 (778)
+..+
T Consensus 217 ~~c~ 220 (270)
T 2o6q_A 217 WDCT 220 (270)
T ss_dssp BCCS
T ss_pred eeCC
Confidence 7643
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=2.2e-12 Score=135.48 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=133.1
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|+++++.+++. ..+. .++|++|++++| .+++. ..+ ..+++|++|++++|... ..+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~L~~n~l~---~~~---------- 101 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGN-KLHDI--SAL-KELTNLTYLILTGNQLQ---SLP---------- 101 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTS-CCCCC--GGG-TTCTTCCEEECTTSCCC---CCC----------
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCC-CCCCc--hhh-cCCCCCCEEECCCCccC---ccC----------
Confidence 5799999999987642 2333 689999999998 57642 233 45789999999999764 111
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|++|++++|.+ ++.. ...+..+++|++|++++|.++ .+
T Consensus 102 ---------------------------~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~----~~ 148 (272)
T 3rfs_A 102 ---------------------------NGVFDKLTNLKELVLVENQL-QSLP-DGVFDKLTNLTYLNLAHNQLQ----SL 148 (272)
T ss_dssp ---------------------------TTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CC
T ss_pred ---------------------------hhHhcCCcCCCEEECCCCcC-CccC-HHHhccCCCCCEEECCCCccC----cc
Confidence 01226789999999999998 5422 235678999999999999987 44
Q ss_pred hH--HHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 245 SF--LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 245 ~~--L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
.. +..+ ++|+.|++++|++++.....+..+++|++|++++|.+ + +.. + ..+..+++|+.|++++|.
T Consensus 149 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~--~~~---~-----~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 149 PKGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-K--SVP---D-----GVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-S--CCC---T-----TTTTTCTTCCEEECCSSC
T ss_pred CHHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-C--ccC---H-----HHHhCCcCCCEEEccCCC
Confidence 33 5677 7999999999998865555578899999999999987 2 111 1 136789999999999998
Q ss_pred CCC
Q psy17257 323 LAG 325 (778)
Q Consensus 323 l~~ 325 (778)
+.+
T Consensus 217 ~~~ 219 (272)
T 3rfs_A 217 WDC 219 (272)
T ss_dssp BCC
T ss_pred ccc
Confidence 754
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=9.7e-13 Score=137.92 Aligned_cols=200 Identities=17% Similarity=0.169 Sum_probs=144.1
Q ss_pred ceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRAD 166 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~ 166 (778)
+.+.++++++.++.. ..-...+|++|++++| .++......+ ..+++|++|++++|... .++
T Consensus 17 ~~~~l~~~~~~l~~i--p~~~~~~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~---~i~------------ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI--PSNIPADTKKLDLQSN-KLSSLPSKAF-HRLTKLRLLYLNDNKLQ---TLP------------ 77 (270)
T ss_dssp TTTEEECTTSCCSSC--CSCCCTTCSEEECCSS-CCSCCCTTSS-SSCTTCCEEECCSSCCS---CCC------------
T ss_pred CCCEEEccCCCCCcc--CCCCCCCCCEEECcCC-CCCeeCHHHh-cCCCCCCEEECCCCccC---eeC------------
Confidence 467888888877631 1111468999999998 5654221122 45789999999998764 111
Q ss_pred cccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-
Q psy17257 167 DFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS- 245 (778)
Q Consensus 167 ~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~- 245 (778)
......+++|++|++++|.+ +... ...+..+++|++|++++|.++ .+.
T Consensus 78 -------------------------~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~----~~~~ 126 (270)
T 2o6q_A 78 -------------------------AGIFKELKNLETLWVTDNKL-QALP-IGVFDQLVNLAELRLDRNQLK----SLPP 126 (270)
T ss_dssp -------------------------TTTTSSCTTCCEEECCSSCC-CCCC-TTTTTTCSSCCEEECCSSCCC----CCCT
T ss_pred -------------------------hhhhcCCCCCCEEECCCCcC-CcCC-HhHcccccCCCEEECCCCccC----eeCH
Confidence 01226789999999999998 5432 236678999999999999998 343
Q ss_pred -HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 246 -FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 246 -~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
.+..+ ++|++|++++|.+.......+..+++|++|++++|.+ +. + + + ..+..+++|+.||+++|.+.
T Consensus 127 ~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~---~-~-~-----~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 127 RVFDSL-TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KR---V-P-E-----GAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SC---C-C-T-----TTTTTCTTCCEEECCSSCCS
T ss_pred HHhCcC-cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cE---e-C-h-----hHhccCCCcCEEECCCCcCC
Confidence 36777 7999999999998764445578899999999999987 21 1 1 1 02578999999999999876
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+ +.. ... ...++|+.|.|.+++..
T Consensus 195 ~--~~~-----------------~~~-~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 195 R--VPE-----------------GAF-DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp C--CCT-----------------TTT-TTCTTCCEEECCSSCBC
T ss_pred c--CCH-----------------HHh-ccccCCCEEEecCCCee
Confidence 3 211 122 25688999999999854
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.39 E-value=3.6e-13 Score=157.51 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=136.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|++++|.++.- ...+. .++|++|++++| .++......+ ..+++|+.|++++|.... ..+.. .+ ..++
T Consensus 278 ~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~-~~-~~l~ 350 (606)
T 3t6q_A 278 SGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSAN-KFENLCQISA-SNFPSLTHLSIKGNTKRL--ELGTG-CL-ENLE 350 (606)
T ss_dssp TTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTC-CCSBGGGGCG-GGCTTCSEEECCSCSSCC--BCCSS-TT-TTCT
T ss_pred cCCCEEeccCCccCCC-ChhhcccccCCEEECccC-CcCcCchhhh-hccCcCCEEECCCCCccc--ccchh-hh-hccC
Confidence 6899999999987731 12233 578999999998 5664322233 357899999999997642 11100 00 0111
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+... .+...+ +.. ....+..+++|+.|++++|.+ ++.. +..+..+++|+.|++++|.++ +....
T Consensus 351 ~L~~L~l~-------~n~l~~-~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~-~~~~~ 418 (606)
T 3t6q_A 351 NLRELDLS-------HDDIET-SDC-CNLQLRNLSHLQSLNLSYNEP-LSLK-TEAFKECPQLELLDLAFTRLK-VKDAQ 418 (606)
T ss_dssp TCCEEECC-------SSCCCE-EEE-STTTTTTCTTCCEEECCSCSC-EEEC-TTTTTTCTTCSEEECTTCCEE-CCTTC
T ss_pred cCCEEECC-------CCcccc-ccC-cchhcccCCCCCEEECCCCcC-CcCC-HHHhcCCccCCeEECCCCcCC-Ccccc
Confidence 11111110 000000 000 011236778888888888876 4322 235667788888888888776 22111
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+ ++|++|++++|.+....+..+..+++|++|++++|++ + ++.+ +.+. .+..+++|+.||+++|.+.
T Consensus 419 ~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~-~~~~-~~~~-----~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 419 SPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF-P-KGNI-QKTN-----SLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC-G-GGEE-CSSC-----GGGGCTTCCEEECTTSCCC
T ss_pred hhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC-C-cccc-ccch-----hhccCCCccEEECCCCccC
Confidence 235566 6788888888887766666677788888888888876 2 1111 1111 2567788888888888765
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+. . |... ...++|+.|.|.+|.+.
T Consensus 490 ~~--~-----------------~~~~-~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 490 SI--D-----------------QHAF-TSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp EE--C-----------------TTTT-TTCTTCCEEECCSSCCC
T ss_pred cc--C-----------------hhhh-ccccCCCEEECCCCccC
Confidence 31 1 1122 24566777777776644
No 36
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=2.4e-12 Score=149.80 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=149.5
Q ss_pred ccchhh-HhhccCCCCceeEEEeeCCccCHHHHHhhc--cCCccEEecCC----------CCCCCHhHHHHHHhcCCCCc
Q psy17257 72 VIDSFV-DTFLTKDITHMKSVKLRNAEVSDSGMQKLL--SHHVQELELIK----------CANVSQASLEVLNMSSDQLY 138 (778)
Q Consensus 72 l~d~~~-~~f~~~~~~~L~~L~L~~~~isd~~l~~L~--~~~L~~LdLs~----------~~~lt~~~l~~L~~~~~~L~ 138 (778)
+++..+ .++.. .++|+.|+++ +.+++.++..+. +++|++|++++ |+.+++.++..+...+++|+
T Consensus 305 l~~~~~~~~~~~--~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 305 LETEDHCTLIQK--CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp CCHHHHHHHHTT--CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCHHHHHHHHHh--CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 555554 33443 3799999999 567888887553 68899999995 77899988888887899999
Q ss_pred eeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEec----CCcccCh
Q psy17257 139 SLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLI----GHTLMSQ 214 (778)
Q Consensus 139 ~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls----~~~l~s~ 214 (778)
+|+++.+.. +.... ..+...+++|+.|+++ .+.+ ++
T Consensus 382 ~L~l~~~~l-~~~~~--------------------------------------~~l~~~~~~L~~L~l~~~~~~n~l-~~ 421 (592)
T 3ogk_B 382 YMAVYVSDI-TNESL--------------------------------------ESIGTYLKNLCDFRLVLLDREERI-TD 421 (592)
T ss_dssp EEEEEESCC-CHHHH--------------------------------------HHHHHHCCSCCEEEEEECSCCSCC-SS
T ss_pred EEEeecCCc-cHHHH--------------------------------------HHHHhhCCCCcEEEEeecCCCccc-cC
Confidence 999955443 22111 0232458999999997 4455 55
Q ss_pred ----hHHHHHhccCCCCCeEeccCcc--ccCCcccchHHHhccccccEEEcCCCCCcchhh-HhhcCCCCccEEeccCCC
Q psy17257 215 ----SICTQLYRDMPHLTHLNLSKCM--FLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNL-DHICSLPLLRRLDISVSS 287 (778)
Q Consensus 215 ----~~l~~~~~~lp~L~~LdLS~~~--i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~-~~l~~L~~L~~LdLS~~~ 287 (778)
.++..++.++++|+.|++++|. ++ +. .+..+....++|+.|++++|++++..+ ..+..+++|++||+++|.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~-~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLT-DL-GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCC-HH-HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCcc-HH-HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 3677788899999999998654 54 32 345565533799999999999987444 456789999999999999
Q ss_pred CCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCcc
Q psy17257 288 DYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGV 328 (778)
Q Consensus 288 ~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~ 328 (778)
+ ++ ..+......+++|++|++++|++++.++
T Consensus 500 l-~~---------~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 500 F-SE---------RAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp C-BH---------HHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred C-cH---------HHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 5 32 2344456789999999999999876554
No 37
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.5e-12 Score=138.25 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=135.8
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|++++|.+++. ..+. .++|++|++++| .+++... ...+++|+.|++++|.... .+
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~~---~~---------- 106 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENKVKD---LS---------- 106 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCCC---GG----------
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCcCCC---Ch----------
Confidence 5799999999987643 2233 679999999998 5765322 3467899999999997641 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
. +..+++|+.|++++|.+ ++- + .+..+++|+.|++++|.++ .+
T Consensus 107 ----------------------------~-l~~l~~L~~L~L~~n~i-~~~--~-~l~~l~~L~~L~l~~n~l~----~~ 149 (291)
T 1h6t_A 107 ----------------------------S-LKDLKKLKSLSLEHNGI-SDI--N-GLVHLPQLESLYLGNNKIT----DI 149 (291)
T ss_dssp ----------------------------G-GTTCTTCCEEECTTSCC-CCC--G-GGGGCTTCCEEECCSSCCC----CC
T ss_pred ----------------------------h-hccCCCCCEEECCCCcC-CCC--h-hhcCCCCCCEEEccCCcCC----cc
Confidence 1 27789999999999998 542 2 5678999999999999998 67
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.+..+ ++|+.|++++|.+.+..+ +..+++|++|++++|.+ ++ + + .+..+++|+.||+++|.+.
T Consensus 150 ~~l~~l-~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i-~~---l---~------~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-SD---L---R------ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CB---C---G------GGTTCTTCSEEEEEEEEEE
T ss_pred hhhccC-CCCCEEEccCCccccchh--hcCCCccCEEECCCCcC-CC---C---h------hhccCCCCCEEECcCCccc
Confidence 778888 799999999999876433 88999999999999987 21 1 2 2678999999999999987
Q ss_pred CCcc
Q psy17257 325 GRGV 328 (778)
Q Consensus 325 ~~~~ 328 (778)
..++
T Consensus 214 ~~~~ 217 (291)
T 1h6t_A 214 NKPI 217 (291)
T ss_dssp CCCE
T ss_pred CCcc
Confidence 6544
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=149.03 Aligned_cols=224 Identities=16% Similarity=0.113 Sum_probs=122.0
Q ss_pred ceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
+|+.|+|+++.+++.....+. .++|++|++++| .+++.....+ ..+++|++|++++|... ..+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l~---~~~----------- 116 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSF-SSLGSLEHLDLSYNYLS---NLS----------- 116 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCS---SCC-----------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhc-CCCCCCCEEECCCCcCC---cCC-----------
Confidence 677777777776643333333 467777777776 4553211122 34567777777777653 111
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc-ccCCcccc
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM-FLFDNKDL 244 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~~~l 244 (778)
...+..+++|++|++++|.+ +.-.....+..+++|++|++++|. +. ....
T Consensus 117 --------------------------~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~ 167 (353)
T 2z80_A 117 --------------------------SSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFT--KIQR 167 (353)
T ss_dssp --------------------------HHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCC--EECT
T ss_pred --------------------------HhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccc--ccCH
Confidence 01125667777777777766 321110145567777777777763 33 1111
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.. + .+ | ......+++|+.||+++|.+.
T Consensus 168 ~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~---~~---~----~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 168 KDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-I---LL---L----EIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp TTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-T---TH---H----HHHHHHTTTEEEEEEESCBCT
T ss_pred HHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-c---cc---h----hhhhhhcccccEEECCCCccc
Confidence 235556 5777777777776655556666777777777777765 1 01 1 112445677777777777765
Q ss_pred CCccccccCC---CCCC------C---CCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSK---GSPD------V---PYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~---~s~~------~---~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+......... .... . ......+|..+. ..++|+.|.|.+|.+.
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLK 290 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHh-cccCCCEEECCCCCCC
Confidence 4322110000 0000 0 000012444443 6788999999988755
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=4.7e-13 Score=140.54 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=99.9
Q ss_pred ceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
+|+.|+|+++.+++.....+. .++|++|++++| .++......+ ..+++|+.|++++|.... ..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~---~~----------- 92 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNPIQS---LA----------- 92 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCCCCE---EC-----------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCCccCc---cC-----------
Confidence 677888888777654433343 567888888887 4553221122 345778888888876531 11
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
...+..+++|+.|++++|.+ +.... ..+..+++|++|++++|.++ +.....
T Consensus 93 --------------------------~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~l~~ 143 (276)
T 2z62_A 93 --------------------------LGAFSGLSSLQKLVAVETNL-ASLEN-FPIGHLKTLKELNVAHNLIQ-SFKLPE 143 (276)
T ss_dssp --------------------------TTTTTTCTTCCEEECTTSCC-CCSTT-CCCTTCTTCCEEECCSSCCC-CCCCCG
T ss_pred --------------------------hhhhcCCccccEEECCCCCc-cccCc-hhcccCCCCCEEECcCCccc-eecCch
Confidence 01125567777777777766 33111 12456677777777777765 210022
Q ss_pred HHHhccccccEEEcCCCCCcchhhHh---hcCCCCcc-EEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDNLDH---ICSLPLLR-RLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~~~~---l~~L~~L~-~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
.+..+ ++|++|++++|++++..... +.+++.|. +|++++|.+ +. + +. .....++|+.||+++|
T Consensus 144 ~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l-~~---~---~~-----~~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 144 YFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NF---I---QP-----GAFKEIRLKELALDTN 210 (276)
T ss_dssp GGGGC-TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC-CE---E---CT-----TSSCSCCEEEEECCSS
T ss_pred hhccC-CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc-cc---c---Cc-----cccCCCcccEEECCCC
Confidence 45566 57777777777765432222 33333333 677777765 11 0 00 0122346777777777
Q ss_pred CCC
Q psy17257 322 NLA 324 (778)
Q Consensus 322 ~l~ 324 (778)
.+.
T Consensus 211 ~l~ 213 (276)
T 2z62_A 211 QLK 213 (276)
T ss_dssp CCS
T ss_pred cee
Confidence 654
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=142.89 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=128.6
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++-....|... ++|+.|+|++|.+++.....+. .++|++|++++| .++.-....+ ..+++|++|++++|....
T Consensus 64 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~- 138 (353)
T 2z80_A 64 ITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSSLTFLNLLGNPYKT- 138 (353)
T ss_dssp CCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHH-TTCTTCSEEECTTCCCSS-
T ss_pred CcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHh-CCCccCCEEECCCCCCcc-
Confidence 554444456543 6999999999998865444454 589999999998 5764322223 457899999999997642
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
++. ...+..+++|++|++++|..++... +..+..+++|+.|
T Consensus 139 --l~~------------------------------------~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L 179 (353)
T 2z80_A 139 --LGE------------------------------------TSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEEL 179 (353)
T ss_dssp --SCS------------------------------------SCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEE
T ss_pred --cCc------------------------------------hhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEE
Confidence 110 0011445555566665553212211 1134455555556
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCC------------
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPN------------ 298 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~------------ 298 (778)
++++|.++ +. ....+..+ ++|++|++++|.+.......+..+++|++|++++|.+ +.. .+...
T Consensus 180 ~l~~n~l~-~~-~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 180 EIDASDLQ-SY-EPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL-DTF-HFSELSTGETNSLIKKF 254 (353)
T ss_dssp EEEETTCC-EE-CTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC-TTC-CCC------CCCCCCEE
T ss_pred ECCCCCcC-cc-CHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCcc-ccc-cccccccccccchhhcc
Confidence 66555554 10 11234444 4555555555554321112233355555555555554 110 00000
Q ss_pred ----------chhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 299 ----------PNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 299 ----------p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.-..+...+..+++|+.||+++|.+.+ +.. .+. ...++|++|.|.+|++.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~-----------------~~~-~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS--VPD-----------------GIF-DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC--CCT-----------------TTT-TTCTTCCEEECCSSCBC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc--cCH-----------------HHH-hcCCCCCEEEeeCCCcc
Confidence 001233346789999999999998752 211 122 25688999999999843
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=2e-12 Score=138.46 Aligned_cols=170 Identities=15% Similarity=0.202 Sum_probs=134.9
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|+|++|.+++... +. .++|++|++++| .+++. ..+ ..+++|+.|++++|.... .+
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~--~~~-~~l~~L~~L~l~~n~l~~---~~---------- 123 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNV--SAI-AGLQSIKTLDLTSTQITD---VT---------- 123 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCC--GGG-TTCTTCCEEECTTSCCCC---CG----------
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCc--hhh-cCCCCCCEEECCCCCCCC---ch----------
Confidence 689999999999875443 43 689999999998 57653 233 457899999999997641 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
. +..+++|+.|++++|.+ ++.. .+..+++|+.|++++|.++ ++
T Consensus 124 ----------------------------~-l~~l~~L~~L~l~~n~l-~~~~---~l~~l~~L~~L~l~~n~l~----~~ 166 (308)
T 1h6u_A 124 ----------------------------P-LAGLSNLQVLYLDLNQI-TNIS---PLAGLTNLQYLSIGNAQVS----DL 166 (308)
T ss_dssp ----------------------------G-GTTCTTCCEEECCSSCC-CCCG---GGGGCTTCCEEECCSSCCC----CC
T ss_pred ----------------------------h-hcCCCCCCEEECCCCcc-CcCc---cccCCCCccEEEccCCcCC----CC
Confidence 1 26789999999999998 5422 2778999999999999998 66
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+ ++|+.|++++|.+++.. .+..+++|++|++++|.+ ++ . + .+..+++|+.|++++|.+.
T Consensus 167 ~~l~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l-~~---~---~------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 167 TPLANL-SKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQI-SD---V---S------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GGGTTC-TTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCC-CB---C---G------GGTTCTTCCEEEEEEEEEE
T ss_pred hhhcCC-CCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCcc-Cc---c---c------cccCCCCCCEEEccCCeee
Confidence 668888 79999999999987532 278899999999999997 21 1 1 1678999999999999987
Q ss_pred CCc
Q psy17257 325 GRG 327 (778)
Q Consensus 325 ~~~ 327 (778)
+.+
T Consensus 231 ~~~ 233 (308)
T 1h6u_A 231 NQP 233 (308)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=7.4e-13 Score=148.91 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=147.0
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++......+. .++|++|+|++| .++......+ ..+++|+.|+|++|.+. .++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~-~~l~~L~~L~L~~n~l~---~~~---------- 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAF-NGLANLNTLELFDNRLT---TIP---------- 128 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGG-TTCSSCCEEECCSSCCS---SCC----------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhc-cCCccCCEEECCCCcCC---eeC----------
Confidence 4789999999988765545554 678999999998 5654322233 45789999999999764 111
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|+.|++++|.+ +... ...+..+++|+.|++++|... +....
T Consensus 129 ---------------------------~~~~~~l~~L~~L~L~~N~i-~~~~-~~~~~~l~~L~~L~l~~~~~l-~~i~~ 178 (440)
T 3zyj_A 129 ---------------------------NGAFVYLSKLKELWLRNNPI-ESIP-SYAFNRIPSLRRLDLGELKRL-SYISE 178 (440)
T ss_dssp ---------------------------TTTSCSCSSCCEEECCSCCC-CEEC-TTTTTTCTTCCEEECCCCTTC-CEECT
T ss_pred ---------------------------HhHhhccccCceeeCCCCcc-cccC-HHHhhhCcccCEeCCCCCCCc-ceeCc
Confidence 01226789999999999998 5422 236778999999999986543 21112
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+ ++|++|++++|.++. +..+..+++|++||+++|.+ +. + .|. .+..+++|+.|++++|.+.
T Consensus 179 ~~~~~l-~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l-~~---~--~~~-----~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 179 GAFEGL-SNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHL-SA---I--RPG-----SFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp TTTTTC-SSCCEEECTTSCCSS--CCCCTTCSSCCEEECTTSCC-CE---E--CTT-----TTTTCTTCCEEECTTCCCC
T ss_pred chhhcc-cccCeecCCCCcCcc--ccccCCCcccCEEECCCCcc-Cc---c--Chh-----hhccCccCCEEECCCCcee
Confidence 246778 799999999999874 23578899999999999987 21 1 111 3678999999999999875
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+- .. ... ...++|++|.|.+|.+.
T Consensus 245 ~~--~~-----------------~~~-~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 245 VI--ER-----------------NAF-DNLQSLVEINLAHNNLT 268 (440)
T ss_dssp EE--CT-----------------TSS-TTCTTCCEEECTTSCCC
T ss_pred EE--Ch-----------------hhh-cCCCCCCEEECCCCCCC
Confidence 32 11 122 25688999999999865
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=7e-13 Score=149.64 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=143.9
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++......+. .++|++|+|++| .++......+ ..+++|+.|+|++|.+. .++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l~---~~~---------- 139 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWLT---VIP---------- 139 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCS---BCC----------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcCC---ccC----------
Confidence 4788999998887764444444 578999999988 5654322223 35678999999988764 111
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|+.|++++|.+ +.-. ...+..+++|+.|++++|... +....
T Consensus 140 ---------------------------~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~l~~~~~l-~~i~~ 189 (452)
T 3zyi_A 140 ---------------------------SGAFEYLSKLRELWLRNNPI-ESIP-SYAFNRVPSLMRLDLGELKKL-EYISE 189 (452)
T ss_dssp ---------------------------TTTSSSCTTCCEEECCSCCC-CEEC-TTTTTTCTTCCEEECCCCTTC-CEECT
T ss_pred ---------------------------hhhhcccCCCCEEECCCCCc-ceeC-HhHHhcCCcccEEeCCCCCCc-cccCh
Confidence 01226789999999999998 5422 236778999999999985543 22112
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+..+ ++|+.|++++|++.+ +..+..+++|++||+++|.+ +. . .|. .+..+++|+.|++++|.+.
T Consensus 190 ~~~~~l-~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l-~~---~--~~~-----~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 190 GAFEGL-FNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHF-PE---I--RPG-----SFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp TTTTTC-TTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCC-SE---E--CGG-----GGTTCTTCCEEECTTSCCC
T ss_pred hhccCC-CCCCEEECCCCcccc--cccccccccccEEECcCCcC-cc---c--Ccc-----cccCccCCCEEEeCCCcCc
Confidence 246677 799999999999874 23578899999999999987 21 1 121 3678999999999999875
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+. .. ... ...++|+.|.|.+|.+.
T Consensus 256 ~~--~~-----------------~~~-~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 256 LI--ER-----------------NAF-DGLASLVELNLAHNNLS 279 (452)
T ss_dssp EE--CT-----------------TTT-TTCTTCCEEECCSSCCS
T ss_pred eE--CH-----------------HHh-cCCCCCCEEECCCCcCC
Confidence 32 11 122 25688999999999865
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=4.3e-13 Score=143.80 Aligned_cols=185 Identities=20% Similarity=0.176 Sum_probs=133.2
Q ss_pred CCceeEEEeeCCccCHH--HHHhhc---cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhh
Q psy17257 85 ITHMKSVKLRNAEVSDS--GMQKLL---SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVV 159 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~--~l~~L~---~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l 159 (778)
.++|+.|+|++|.+++. .+..+. .++|++|++++| .++......+ ..+++|+.|++++|........+
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~----- 192 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV-RVFPALSTLDLSDNPELGERGLI----- 192 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHH-----
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-ccCCCCCEEECCCCCcCcchHHH-----
Confidence 47999999999998764 222221 379999999998 5754332233 35789999999999864110000
Q ss_pred ccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccCh--hHHHHHhccCCCCCeEeccCccc
Q psy17257 160 GEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQ--SICTQLYRDMPHLTHLNLSKCMF 237 (778)
Q Consensus 160 ~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~--~~l~~~~~~lp~L~~LdLS~~~i 237 (778)
. ......+++|+.|++++|.+ +. .....++..+++|+.||+++|.+
T Consensus 193 ~-------------------------------~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 193 S-------------------------------ALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp H-------------------------------HSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred H-------------------------------HHHhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 0 00116789999999999999 53 23344667899999999999999
Q ss_pred cCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEe
Q psy17257 238 LFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317 (778)
Q Consensus 238 ~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LD 317 (778)
+ +......+..+ ++|+.|+|++|.++ .++..+. ++|++||+++|++ ++ .|. +..+++|+.||
T Consensus 241 ~-~~~~~~~~~~l-~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l-~~------~p~------~~~l~~L~~L~ 302 (312)
T 1wwl_A 241 R-DAAGAPSCDWP-SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL-DR------NPS------PDELPQVGNLS 302 (312)
T ss_dssp C-SSCCCSCCCCC-TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC-CS------CCC------TTTSCEEEEEE
T ss_pred C-cccchhhhhhc-CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC-CC------Chh------HhhCCCCCEEe
Confidence 8 32112334445 79999999999987 4555555 8999999999998 31 131 57899999999
Q ss_pred ecCCCCCCC
Q psy17257 318 ISGTNLAGR 326 (778)
Q Consensus 318 LSgn~l~~~ 326 (778)
+++|++.+.
T Consensus 303 L~~N~l~~~ 311 (312)
T 1wwl_A 303 LKGNPFLDS 311 (312)
T ss_dssp CTTCTTTCC
T ss_pred ccCCCCCCC
Confidence 999998753
No 45
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=3.2e-13 Score=144.54 Aligned_cols=206 Identities=17% Similarity=0.105 Sum_probs=125.0
Q ss_pred CceeEEEeeCCccCHHHHHhh--c-cCCccEEecCCCCCCCHhH--HHHHH-hcCCCCceeecCCCCCCCc--cccchhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKL--L-SHHVQELELIKCANVSQAS--LEVLN-MSSDQLYSLSLGPHCSMFP--DCLESEV 157 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L--~-~~~L~~LdLs~~~~lt~~~--l~~L~-~~~~~L~~L~Ls~c~~~~~--~~~~~~~ 157 (778)
.+|++|+|++|.+++.....+ . .++|++|++++| .+++.. +.... ..+++|+.|+|++|..... ....
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--- 166 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR--- 166 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC---
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc---
Confidence 357778887777665444333 2 567777788777 455321 11111 2567777888877766311 1100
Q ss_pred hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccCh--hHHHHHhccCCCCCeEeccCc
Q psy17257 158 VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQ--SICTQLYRDMPHLTHLNLSKC 235 (778)
Q Consensus 158 ~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~--~~l~~~~~~lp~L~~LdLS~~ 235 (778)
..+..+.+..+. +...+........+...+++|++|++++|.+ +. .....++..+++|++||+|+|
T Consensus 167 ----~l~~L~~L~Ls~-------N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 167 ----AFPALTSLDLSD-------NPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp ----CCTTCCEEECCS-------CTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred ----cCCCCCEEECCC-------CCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCC
Confidence 011111111110 0001000000011236789999999999999 53 222334678999999999999
Q ss_pred cccCCcccchHHHhcc--ccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCC
Q psy17257 236 MFLFDNKDLSFLAEFK--DTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHL 313 (778)
Q Consensus 236 ~i~~~~~~l~~L~~l~--~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L 313 (778)
.++ +.. ...+..+. ++|++|+|++|+++ .++..+. ++|++||+++|++ + + + | ....+++|
T Consensus 235 ~l~-~~~-p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l-~--~-~---~------~~~~l~~L 296 (310)
T 4glp_A 235 SLR-ATV-NPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL-N--R-A---P------QPDELPEV 296 (310)
T ss_dssp CCC-CCC-CSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC-C--S-C---C------CTTSCCCC
T ss_pred CCC-ccc-hhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC-C--C-C---c------hhhhCCCc
Confidence 998 321 12344431 59999999999988 4555453 8999999999998 2 1 1 2 14678999
Q ss_pred CEEeecCCCCCC
Q psy17257 314 VSLDISGTNLAG 325 (778)
Q Consensus 314 ~~LDLSgn~l~~ 325 (778)
+.|++++|++.+
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999864
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=1e-12 Score=145.07 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=29.7
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCC
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCS 147 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~ 147 (778)
++|+.|+|+++.+++.....+. .++|++|++++| .++......+ ..+++|+.|++++|..
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERNDL 129 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCCcc
Confidence 3566666666655543322332 455666666665 3433211112 2345666666666654
No 47
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.36 E-value=1.1e-12 Score=139.14 Aligned_cols=197 Identities=21% Similarity=0.158 Sum_probs=134.3
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
.+++.++++++.++.-. ..+ .++++.|++++| .++......+ ..+++|+.|+|++|.+. ..+
T Consensus 10 ~~l~~l~~~~~~l~~ip-~~~-~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n~l~---~~~----------- 71 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALP-PDL-PKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAELT---KLQ----------- 71 (290)
T ss_dssp TTCCEEECTTSCCSSCC-SCC-CTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSCCC---EEE-----------
T ss_pred CCccEEECCCCCCCcCC-CCC-CCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCCccC---ccc-----------
Confidence 57888888887766311 111 367899999998 5654332233 34688999999988753 111
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc-
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL- 244 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l- 244 (778)
.. ..+++|+.|++++|.+ +. ++..+..+++|+.|++++|.++ .+
T Consensus 72 ---------------------------~~-~~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~l~~N~l~----~l~ 116 (290)
T 1p9a_G 72 ---------------------------VD-GTLPVLGTLDLSHNQL-QS--LPLLGQTLPALTVLDVSFNRLT----SLP 116 (290)
T ss_dssp ---------------------------CC-SCCTTCCEEECCSSCC-SS--CCCCTTTCTTCCEEECCSSCCC----CCC
T ss_pred ---------------------------CC-CCCCcCCEEECCCCcC-Cc--CchhhccCCCCCEEECCCCcCc----ccC
Confidence 01 4678889999998887 42 3335667888999999998887 34
Q ss_pred -hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 245 -SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 245 -~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
..+..+ ++|+.|+|++|++.......+..+++|++|++++|++ +. + |. ..+..+++|+.|++++|.+
T Consensus 117 ~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~---l---~~----~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 117 LGALRGL-GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-TE---L---PA----GLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp SSTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-SC---C---CT----TTTTTCTTCCEEECCSSCC
T ss_pred HHHHcCC-CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC-Cc---c---CH----HHhcCcCCCCEEECCCCcC
Confidence 246677 6899999998888754445567888899999998887 21 1 11 1256788899999999887
Q ss_pred CCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 324 AGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.. +|.-+. ..+.|++|.|.+++..
T Consensus 185 ~~--------------------ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 185 YT--------------------IPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CC--------------------CCTTTT-TTCCCSEEECCSCCBC
T ss_pred Cc--------------------cChhhc-ccccCCeEEeCCCCcc
Confidence 52 122221 4467888888888754
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=5.7e-13 Score=152.01 Aligned_cols=215 Identities=16% Similarity=0.077 Sum_probs=127.8
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|+|++|.+++.....+. .++|+.|+|++| .+++.. . ...+++|+.|+|++|.+. ..+. .+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~--l~~l~~L~~L~Ls~N~l~---~l~~-------~~ 99 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETL-D--LESLSTLRTLDLNNNYVQ---ELLV-------GP 99 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEE-E--CTTCTTCCEEECCSSEEE---EEEE-------CT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCc-c--cccCCCCCEEEecCCcCC---CCCC-------CC
Confidence 4788999998887765444554 578999999988 465321 1 245678999999888653 1110 00
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+.. +.+...+ + . ...+++|+.|++++|.+ ++.. +..+..+++|+.||+++|.++ +. ..
T Consensus 100 ~L~~L~L-------~~N~l~~-~-----~-~~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~-~~-~~ 161 (487)
T 3oja_A 100 SIETLHA-------ANNNISR-V-----S-CSRGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEID-TV-NF 161 (487)
T ss_dssp TCCEEEC-------CSSCCCC-E-----E-ECCCSSCEEEECCSSCC-CSGG-GBCGGGGSSEEEEECTTSCCC-EE-EG
T ss_pred CcCEEEC-------cCCcCCC-C-----C-ccccCCCCEEECCCCCC-CCCC-chhhcCCCCCCEEECCCCCCC-Cc-Ch
Confidence 0000000 0011111 0 0 13457788888888877 4422 224556778888888888776 21 12
Q ss_pred hHHH-hccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 245 SFLA-EFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 245 ~~L~-~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
..+. .+ ++|+.|+|++|.+++. .....+++|++||+|+|.+ + + + |. .+..+++|+.||+++|.+
T Consensus 162 ~~l~~~l-~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l-~--~-~---~~-----~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 162 AELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL-A--F-M---GP-----EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC-C--E-E---CG-----GGGGGTTCSEEECTTSCC
T ss_pred HHHhhhC-CcccEEecCCCccccc--cccccCCCCCEEECCCCCC-C--C-C---CH-----hHcCCCCccEEEecCCcC
Confidence 2343 45 6788888888877643 2234577888888888876 2 1 1 11 156677888888888876
Q ss_pred CCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 324 AGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+ +|..+ ...++|+.|.+.+|++.
T Consensus 227 ~~--------------------lp~~l-~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 227 VL--------------------IEKAL-RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CE--------------------ECTTC-CCCTTCCEEECTTCCBC
T ss_pred cc--------------------cchhh-ccCCCCCEEEcCCCCCc
Confidence 52 22233 25577888888877743
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=148.89 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=141.2
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCC-
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMF- 149 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~- 149 (778)
++......|... ++|+.|+|++|.+++.....+. .++|++|+|++| .++.... .....+++|+.|+|++|....
T Consensus 44 l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 44 IKTLNQDEFASF--PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp CCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCCEEECTTSCCCEE
T ss_pred cceECHhHccCC--CCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCc-ccccCCCCCCEEECCCCccccC
Confidence 555444556543 6888999988887765444454 578889998887 4653211 112356788889888887641
Q ss_pred -ccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCC
Q psy17257 150 -PDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLT 228 (778)
Q Consensus 150 -~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~ 228 (778)
+..+. .++..+.+..+. +. +.......+..+++|+.|++++|.+ +... ...+..+++|+
T Consensus 120 ~~~~~~-------~l~~L~~L~l~~-------n~----l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~l~~l~~L~ 179 (477)
T 2id5_A 120 LDYMFQ-------DLYNLKSLEVGD-------ND----LVYISHRAFSGLNSLEQLTLEKCNL-TSIP-TEALSHLHGLI 179 (477)
T ss_dssp CTTTTT-------TCTTCCEEEECC-------TT----CCEECTTSSTTCTTCCEEEEESCCC-SSCC-HHHHTTCTTCC
T ss_pred ChhHcc-------ccccCCEEECCC-------Cc----cceeChhhccCCCCCCEEECCCCcC-cccC-hhHhcccCCCc
Confidence 11110 011111111100 00 0000011226677788888887777 4422 23566777888
Q ss_pred eEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHH
Q psy17257 229 HLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI 306 (778)
Q Consensus 229 ~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~ 306 (778)
.|++++|.+. .+. .+..+ ++|+.|++++|...+..+.......+|++|++++|.+ +. + |. ..
T Consensus 180 ~L~l~~n~i~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~---~---~~----~~ 243 (477)
T 2id5_A 180 VLRLRHLNIN----AIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TA---V---PY----LA 243 (477)
T ss_dssp EEEEESCCCC----EECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC-CS---C---CH----HH
T ss_pred EEeCCCCcCc----EeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcc-cc---c---CH----HH
Confidence 8888877776 232 35556 6788888877776665555555666788888888876 21 1 21 13
Q ss_pred HhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 307 IFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 307 ~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+..+++|+.||+++|.+.+ ... ..+ ...++|+.|.|.+|.+.
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~--~~~-----------------~~~-~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPIST--IEG-----------------SML-HELLRLQEIQLVGGQLA 285 (477)
T ss_dssp HTTCTTCCEEECCSSCCCE--ECT-----------------TSC-TTCTTCCEEECCSSCCS
T ss_pred hcCccccCeeECCCCcCCc--cCh-----------------hhc-cccccCCEEECCCCccc
Confidence 6788899999999988752 111 122 25678999999988755
No 50
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.35 E-value=3.2e-12 Score=143.86 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=84.4
Q ss_pred hhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhh
Q psy17257 195 ILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHI 272 (778)
Q Consensus 195 ~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l 272 (778)
+..+++|+.|++++|.+ ++.. +..+..+++|++|++++|.++ .+ ..+..+ ++|++|++++|.+++..+..+
T Consensus 295 ~~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEI-NKID-DNAFWGLTHLLKLNLSQNFLG----SIDSRMFENL-DKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTTCTTCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSSCCC----EECGGGGTTC-TTCCEEECCSSCCCEECTTTT
T ss_pred cccCCCCCEEECCCCcc-cccC-hhHhcCcccCCEEECCCCccC----CcChhHhcCc-ccCCEEECCCCcccccChhhc
Confidence 47788888888888888 5432 225667888888888888886 33 346677 688888888888876666778
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
..+++|++||+++|.+ ++ + |. ..+..+++|+.|++++|++.++
T Consensus 368 ~~l~~L~~L~L~~N~l-~~---~---~~----~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 368 LGLPNLKELALDTNQL-KS---V---PD----GIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCTTCCEEECCSSCC-SC---C---CT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccEEECCCCcc-cc---C---CH----hHhccCCcccEEEccCCCcccC
Confidence 8888899999988887 21 1 11 1256788899999999887654
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.35 E-value=1.2e-12 Score=152.96 Aligned_cols=232 Identities=20% Similarity=0.178 Sum_probs=144.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHH-HHHhcCCCCceeecCCCCCCCccccchhhhhcccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLE-VLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQ 163 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~-~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~ 163 (778)
.+|+.++++++.+++.....+. .++|++|++++| .++. ++ .+ ..+++|++|++++|..... .+. .. ..+
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~--lp~~l-~~l~~L~~L~l~~n~l~~~--~~~--~~-~~l 324 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSE--LPSGL-VGLSTLKKLVLSANKFENL--CQI--SA-SNF 324 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSC--CCSSC-CSCTTCCEEECTTCCCSBG--GGG--CG-GGC
T ss_pred CceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCC--CChhh-cccccCCEEECccCCcCcC--chh--hh-hcc
Confidence 3799999999987765444454 578999999998 5652 22 22 4568999999999976521 110 00 011
Q ss_pred ccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhH-HHHHhccCCCCCeEeccCccccCCcc
Q psy17257 164 RADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSI-CTQLYRDMPHLTHLNLSKCMFLFDNK 242 (778)
Q Consensus 164 p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~-l~~~~~~lp~L~~LdLS~~~i~~~~~ 242 (778)
+..+.+... .+...+.+.. ..+..+++|+.|++++|.+ ++.. ....+..+++|+.|++++|.+. +.
T Consensus 325 ~~L~~L~l~-------~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~- 391 (606)
T 3t6q_A 325 PSLTHLSIK-------GNTKRLELGT---GCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPL-SL- 391 (606)
T ss_dssp TTCSEEECC-------SCSSCCBCCS---STTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCE-EE-
T ss_pred CcCCEEECC-------CCCcccccch---hhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCC-cC-
Confidence 111111111 1111111111 2236788888888888887 4422 1225667888888888888876 21
Q ss_pred cchHHHhccccccEEEcCCCCCcchhhH-hhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 243 DLSFLAEFKDTLVSLVLFNVSIVKDNLD-HICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 243 ~l~~L~~l~~~L~~L~L~~~~~~~~~~~-~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
....+..+ ++|+.|++++|.+.+..+. .+..+++|++|++++|.+ +. . .|. .+..+++|+.|++++|
T Consensus 392 ~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~--~---~~~-----~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 392 KTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DI--S---SEQ-----LFDGLPALQHLNLQGN 459 (606)
T ss_dssp CTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BT--T---CTT-----TTTTCTTCCEEECTTC
T ss_pred CHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CC--c---CHH-----HHhCCCCCCEEECCCC
Confidence 12346667 6888888888887654433 377888888888888876 21 1 111 2567888999999998
Q ss_pred CCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 322 NLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 322 ~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+.+..+.. +... ...++|++|.|.+|.+.
T Consensus 460 ~l~~~~~~~----------------~~~~-~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 460 HFPKGNIQK----------------TNSL-QTLGRLEILVLSFCDLS 489 (606)
T ss_dssp BCGGGEECS----------------SCGG-GGCTTCCEEECTTSCCC
T ss_pred CCCcccccc----------------chhh-ccCCCccEEECCCCccC
Confidence 875422211 1123 26788999999998865
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=148.11 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=158.9
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCC-
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMF- 149 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~- 149 (778)
+++.....|... ++|+.|+|++|.++......+. .++|++|+|++| .++......+ ..+++|+.|++++|....
T Consensus 68 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 68 VSAVEPGAFNNL--FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMF-QDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp CCEECTTTTTTC--TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEEECCTTCCEE
T ss_pred cCEeChhhhhCC--ccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHc-cccccCCEEECCCCcccee
Confidence 555445566644 6999999999988754444443 689999999998 5654221222 457899999999997641
Q ss_pred -ccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCC
Q psy17257 150 -PDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLT 228 (778)
Q Consensus 150 -~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~ 228 (778)
+..+. .++..+.+..+. +...+ + ....+..+++|+.|++++|.+ +... ...+..+++|+
T Consensus 144 ~~~~~~-------~l~~L~~L~l~~-------n~l~~-~---~~~~l~~l~~L~~L~l~~n~i-~~~~-~~~~~~l~~L~ 203 (477)
T 2id5_A 144 SHRAFS-------GLNSLEQLTLEK-------CNLTS-I---PTEALSHLHGLIVLRLRHLNI-NAIR-DYSFKRLYRLK 203 (477)
T ss_dssp CTTSST-------TCTTCCEEEEES-------CCCSS-C---CHHHHTTCTTCCEEEEESCCC-CEEC-TTCSCSCTTCC
T ss_pred Chhhcc-------CCCCCCEEECCC-------CcCcc-c---ChhHhcccCCCcEEeCCCCcC-cEeC-hhhcccCcccc
Confidence 11111 111111111110 00111 1 112348899999999999998 5432 23577899999
Q ss_pred eEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHh
Q psy17257 229 HLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIF 308 (778)
Q Consensus 229 ~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~ 308 (778)
.|++++|... +.. ....... .+|++|++++|.++......+..+++|++||+++|.+ +. . + + ..+.
T Consensus 204 ~L~l~~~~~~-~~~-~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~---~-~-~-----~~~~ 269 (477)
T 2id5_A 204 VLEISHWPYL-DTM-TPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-ST---I-E-G-----SMLH 269 (477)
T ss_dssp EEEEECCTTC-CEE-CTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CE---E-C-T-----TSCT
T ss_pred eeeCCCCccc-ccc-CcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcC-Cc---c-C-h-----hhcc
Confidence 9999998765 321 1223334 4899999999998864446788999999999999987 21 1 0 1 1267
Q ss_pred cCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 309 KLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 309 ~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+++|+.|++++|.+.+ +.+ ... ...++|+.|.|.+|.+.
T Consensus 270 ~l~~L~~L~L~~n~l~~--~~~-----------------~~~-~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAV--VEP-----------------YAF-RGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TCTTCCEEECCSSCCSE--ECT-----------------TTB-TTCTTCCEEECCSSCCS
T ss_pred ccccCCEEECCCCccce--ECH-----------------HHh-cCcccCCEEECCCCcCc
Confidence 89999999999998763 211 122 25689999999999865
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.4e-12 Score=152.59 Aligned_cols=222 Identities=15% Similarity=0.121 Sum_probs=107.1
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|+|++|.+++.....+. .++|++|+|++| .++......+ ..+++|+.|+|++|.+.. ++... .+ ..+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~---l~~~~-~~-~l~ 147 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERNDLSS---LPRGI-FH-NTP 147 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSCCCC---CCTTT-TT-TCT
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHH-cCCCCCCEEEeeCCCCCC---CCHHH-hc-cCC
Confidence 4677777777766544333333 456777777776 3543221112 345677777777776531 11000 00 001
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+... .+...+. ....+..+++|+.|++++|.+ ++.+ ...+++|+.|++++|.++ .+
T Consensus 148 ~L~~L~Ls-------~N~l~~~----~~~~~~~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n~l~----~l 207 (597)
T 3oja_B 148 KLTTLSMS-------NNNLERI----EDDTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYNLLS----TL 207 (597)
T ss_dssp TCCEEECC-------SSCCCBC----CTTTTTTCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSSCCS----EE
T ss_pred CCCEEEee-------CCcCCCC----ChhhhhcCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccCccc----cc
Confidence 00111000 0001110 011225667777777777766 4322 334556666655555544 11
Q ss_pred hHHH-----------------hccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHH
Q psy17257 245 SFLA-----------------EFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYII 307 (778)
Q Consensus 245 ~~L~-----------------~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~ 307 (778)
+... ...++|+.|+|++|.+++ +..+..+++|++||+++|.+ + +.. |. .+
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l-~--~~~---~~-----~~ 274 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL-E--KIM---YH-----PF 274 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC-C--EEE---SG-----GG
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCcc-C--CCC---HH-----Hh
Confidence 1000 000245555555555443 23455566666666666655 1 110 11 24
Q ss_pred hcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 308 FKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 308 ~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
..+++|+.|++++|.+.+ +|.... ..++|+.|.|.+|.+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~--------------------l~~~~~-~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA--------------------LNLYGQ-PIPTLKVLDLSHNHLL 314 (597)
T ss_dssp TTCSSCCEEECTTSCCCE--------------------EECSSS-CCTTCCEEECCSSCCC
T ss_pred cCccCCCEEECCCCCCCC--------------------CCcccc-cCCCCcEEECCCCCCC
Confidence 556666666666665532 333442 5688999999988854
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=1.1e-12 Score=140.91 Aligned_cols=214 Identities=16% Similarity=0.070 Sum_probs=123.9
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|+|++|.+++.....+. .++|++|++++| .+++.. . ...+++|+.|++++|.... .+. .+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~l~~---l~~-------~~ 99 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQE---LLV-------GP 99 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSEEEE---EEE-------CT
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCcccc---ccC-------CC
Confidence 5788888888887765444454 578888888887 464321 1 2456788888888886531 110 00
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+... .+...+ + . ...+++|+.|++++|.+ +... +..+..+++|+.||+++|.++ +. ..
T Consensus 100 ~L~~L~l~-------~n~l~~-~-----~-~~~~~~L~~L~l~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~-~~-~~ 161 (317)
T 3o53_A 100 SIETLHAA-------NNNISR-V-----S-CSRGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLNEID-TV-NF 161 (317)
T ss_dssp TCCEEECC-------SSCCSE-E-----E-ECCCSSCEEEECCSSCC-CSGG-GBCTGGGSSEEEEECTTSCCC-EE-EG
T ss_pred CcCEEECC-------CCccCC-c-----C-ccccCCCCEEECCCCCC-CCcc-chhhhccCCCCEEECCCCCCC-cc-cH
Confidence 00000000 000000 0 0 13457788888888777 4422 224456778888888887776 21 12
Q ss_pred hHH-HhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 245 SFL-AEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 245 ~~L-~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
..+ ..+ ++|++|++++|.+++. .....+++|++||+++|.+ +. + |. .+..+++|+.||+++|.+
T Consensus 162 ~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l-~~---l---~~-----~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 162 AELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL-AF---M---GP-----EFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp GGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC-CE---E---CG-----GGGGGTTCSEEECTTSCC
T ss_pred HHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcC-Cc---c---hh-----hhcccCcccEEECcCCcc
Confidence 223 345 6788888888777542 2233477788888888776 21 1 11 155677888888888876
Q ss_pred CCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCC
Q psy17257 324 AGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKH 367 (778)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~ 367 (778)
.+ +|..+ ...++|+.|.|.+|++
T Consensus 227 ~~--------------------l~~~~-~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 227 VL--------------------IEKAL-RFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CE--------------------ECTTC-CCCTTCCEEECTTCCC
T ss_pred cc--------------------hhhHh-hcCCCCCEEEccCCCc
Confidence 42 12222 2457788888887774
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=2.4e-12 Score=138.86 Aligned_cols=242 Identities=16% Similarity=0.149 Sum_probs=152.9
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|++|.++......+. .++|++|++++| .++. +. ....++|+.|++++|....
T Consensus 64 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~--l~--~~~~~~L~~L~l~~n~l~~- 135 (330)
T 1xku_A 64 ITEIKDGDFKNL--KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKE--LP--EKMPKTLQELRVHENEITK- 135 (330)
T ss_dssp CCCBCTTTTTTC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSB--CC--SSCCTTCCEEECCSSCCCB-
T ss_pred CCEeChhhhccC--CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCc--cC--hhhcccccEEECCCCcccc-
Confidence 554444455543 6899999999998765444454 578999999998 4652 11 0123689999999887641
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
.... ... .++..+.+..+. +... ..... ...+..+++|+.|++++|.+ +. ++. .-.++|++|
T Consensus 136 --~~~~-~~~-~l~~L~~L~l~~-------n~l~-~~~~~-~~~~~~l~~L~~L~l~~n~l-~~--l~~--~~~~~L~~L 197 (330)
T 1xku_A 136 --VRKS-VFN-GLNQMIVVELGT-------NPLK-SSGIE-NGAFQGMKKLSYIRIADTNI-TT--IPQ--GLPPSLTEL 197 (330)
T ss_dssp --BCHH-HHT-TCTTCCEEECCS-------SCCC-GGGBC-TTGGGGCTTCCEEECCSSCC-CS--CCS--SCCTTCSEE
T ss_pred --cCHh-Hhc-CCccccEEECCC-------CcCC-ccCcC-hhhccCCCCcCEEECCCCcc-cc--CCc--cccccCCEE
Confidence 1100 000 111111111100 0000 00000 12237899999999999998 43 111 123899999
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
++++|.++ +. ....+..+ ++|+.|++++|.+.+.....+..+++|++|++++|.+ + .+ |. .+..+
T Consensus 198 ~l~~n~l~-~~-~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~---~l---p~-----~l~~l 262 (330)
T 1xku_A 198 HLDGNKIT-KV-DAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-V---KV---PG-----GLADH 262 (330)
T ss_dssp ECTTSCCC-EE-CTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-S---SC---CT-----TTTTC
T ss_pred ECCCCcCC-cc-CHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC-c---cC---Ch-----hhccC
Confidence 99999987 21 12457788 7999999999999876566788999999999999987 2 11 21 25789
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
++|+.||+++|.+.+-+.... .. .... ...+.|+.|.+.++++.
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f--~~-----------~~~~-~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDF--CP-----------PGYN-TKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSS--SC-----------SSCC-TTSCCCSEEECCSSSSC
T ss_pred CCcCEEECCCCcCCccChhhc--CC-----------cccc-cccccccceEeecCccc
Confidence 999999999999875332111 10 0111 13467888999988854
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=7.4e-13 Score=151.07 Aligned_cols=224 Identities=11% Similarity=0.039 Sum_probs=152.6
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|++|.+++... +. .++|++|+|++| .+++-. ..++|+.|++++|.+...
T Consensus 46 l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~------~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 46 LSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL------VGPSIETLHAANNNISRV 114 (487)
T ss_dssp CCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEE------ECTTCCEEECCSSCCCCE
T ss_pred CCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCC------CCCCcCEEECcCCcCCCC
Confidence 555444566543 689999999998764221 33 678999999998 565421 347899999999987521
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
... ..+....+.. +.+...+.. ...+..+++|+.|++++|.+ ++..+..+...+++|+.|
T Consensus 115 ~~~--------~l~~L~~L~L-------~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 115 SCS--------RGQGKKNIYL-------ANNKITMLR----DLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEC--------CCSSCEEEEC-------CSSCCCSGG----GBCGGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEE
T ss_pred Ccc--------ccCCCCEEEC-------CCCCCCCCC----chhhcCCCCCCEEECCCCCC-CCcChHHHhhhCCcccEE
Confidence 110 0111111111 111112211 12237789999999999999 665555455689999999
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
++++|.++ .++....+ ++|+.|+|++|.+++ .+..+..+++|++||+++|.+ + + + |. .+..+
T Consensus 175 ~Ls~N~l~----~~~~~~~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l-~--~-l---p~-----~l~~l 236 (487)
T 3oja_A 175 NLQYNFIY----DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-V--L-I---EK-----ALRFS 236 (487)
T ss_dssp ECTTSCCC----EEECCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC-C--E-E---CT-----TCCCC
T ss_pred ecCCCccc----cccccccC-CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC-c--c-c---ch-----hhccC
Confidence 99999998 56555567 799999999999986 444588999999999999998 2 1 2 21 25778
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeecc
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLY 363 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~ 363 (778)
++|+.||+++|.+..+. +|.++. ..+.|+.+.+.
T Consensus 237 ~~L~~L~l~~N~l~c~~------------------~~~~~~-~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGT------------------LRDFFS-KNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHH------------------HHHHHT-TCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcc------------------hHHHHH-hCCCCcEEecc
Confidence 99999999999875221 234553 56777777775
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=3.6e-12 Score=148.89 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=135.8
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|++++|.+++.. .+. +++|+.|+|++| .+++... + ..+++|+.|+|++|.+.. .+
T Consensus 43 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N-~l~~~~~--l-~~l~~L~~L~Ls~N~l~~---l~---------- 103 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKP--L-TNLKNLGWLFLDENKIKD---LS---------- 103 (605)
T ss_dssp TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTS-CCCCCGG--G-GGCTTCCEEECCSSCCCC---CT----------
T ss_pred CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCC-CCCCChh--h-ccCCCCCEEECcCCCCCC---Ch----------
Confidence 47999999999876532 343 689999999998 5664322 3 468899999999997642 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
. +..+++|+.|+|++|.+ ++ ++ .+..+++|+.|+|++|.++ .+
T Consensus 104 ----------------------------~-l~~l~~L~~L~Ls~N~l-~~--l~-~l~~l~~L~~L~Ls~N~l~----~l 146 (605)
T 1m9s_A 104 ----------------------------S-LKDLKKLKSLSLEHNGI-SD--IN-GLVHLPQLESLYLGNNKIT----DI 146 (605)
T ss_dssp ----------------------------T-STTCTTCCEEECTTSCC-CC--CG-GGGGCTTCSEEECCSSCCC----CC
T ss_pred ----------------------------h-hccCCCCCEEEecCCCC-CC--Cc-cccCCCccCEEECCCCccC----Cc
Confidence 1 26789999999999998 54 23 4778999999999999998 67
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+.+..+ ++|+.|+|++|.+.+..+ +..+++|++|+|++|.+ ++ + | .+..+++|+.|++++|.+.
T Consensus 147 ~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i-~~---l---~------~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 147 TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-SD---L---R------ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CB---C---G------GGTTCTTCSEEECCSEEEE
T ss_pred hhhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC-CC---C---h------HHccCCCCCEEEccCCcCc
Confidence 778888 799999999999876444 88999999999999987 21 1 2 2688999999999999987
Q ss_pred CCcc
Q psy17257 325 GRGV 328 (778)
Q Consensus 325 ~~~~ 328 (778)
+.++
T Consensus 211 ~~p~ 214 (605)
T 1m9s_A 211 NKPI 214 (605)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6543
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.34 E-value=1.3e-11 Score=139.67 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=38.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ ++.. .+..+++|+.|++++|.++ .+..+..+ ++|+.|++++|++.+.. .+..+
T Consensus 240 ~~l~~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~l~~n~l~----~~~~~~~l-~~L~~L~L~~n~l~~~~--~~~~l 308 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQI-SNLA---PLSGLTKLTELKLGANQIS----NISPLAGL-TALTNLELNENQLEDIS--PISNL 308 (466)
T ss_dssp GGCTTCSEEECCSSCC-CCCG---GGTTCTTCSEEECCSSCCC----CCGGGTTC-TTCSEEECCSSCCSCCG--GGGGC
T ss_pred hcCCCCCEEECCCCcc-ccch---hhhcCCCCCEEECCCCccC----ccccccCC-CccCeEEcCCCcccCch--hhcCC
Confidence 4455555555555554 2211 1344555555555555554 33334444 45555555555544311 14445
Q ss_pred CCccEEeccCCCC
Q psy17257 276 PLLRRLDISVSSD 288 (778)
Q Consensus 276 ~~L~~LdLS~~~~ 288 (778)
++|++|++++|.+
T Consensus 309 ~~L~~L~L~~n~l 321 (466)
T 1o6v_A 309 KNLTYLTLYFNNI 321 (466)
T ss_dssp TTCSEEECCSSCC
T ss_pred CCCCEEECcCCcC
Confidence 5555555555544
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=1e-11 Score=131.79 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=133.7
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
.++|++|++++| .++.. ..+ ..+++|+.|++++|.... ..
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~~-~~l~~L~~L~L~~n~l~~---~~--------------------------------- 84 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QGI-QYLPNVTKLFLNGNKLTD---IK--------------------------------- 84 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TTG-GGCTTCCEEECCSSCCCC---CG---------------------------------
T ss_pred cCcccEEEccCC-CcccC--hhH-hcCCCCCEEEccCCccCC---Cc---------------------------------
Confidence 357999999998 56532 233 457899999999997641 11
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcch
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~ 267 (778)
. +..+++|+.|++++|.+ ++ ++ .+..+++|++|++++|.++ .++.+..+ ++|+.|++++|.+++-
T Consensus 85 -----~-l~~l~~L~~L~l~~n~l-~~--~~-~l~~l~~L~~L~L~~n~i~----~~~~l~~l-~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 85 -----P-LANLKNLGWLFLDENKV-KD--LS-SLKDLKKLKSLSLEHNGIS----DINGLVHL-PQLESLYLGNNKITDI 149 (291)
T ss_dssp -----G-GTTCTTCCEEECCSSCC-CC--GG-GGTTCTTCCEEECTTSCCC----CCGGGGGC-TTCCEEECCSSCCCCC
T ss_pred -----c-cccCCCCCEEECCCCcC-CC--Ch-hhccCCCCCEEECCCCcCC----CChhhcCC-CCCCEEEccCCcCCcc
Confidence 1 26789999999999998 54 33 4788999999999999998 67788888 7999999999998763
Q ss_pred hhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCcc
Q psy17257 268 NLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIP 347 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~ 347 (778)
..+..+++|++|++++|.+ ++ .+. +..+++|+.|++++|.+.+ ++
T Consensus 150 --~~l~~l~~L~~L~L~~N~l-~~------~~~------l~~l~~L~~L~L~~N~i~~--------------------l~ 194 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQI-SD------IVP------LAGLTKLQNLYLSKNHISD--------------------LR 194 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCC-CC------CGG------GTTCTTCCEEECCSSCCCB--------------------CG
T ss_pred --hhhccCCCCCEEEccCCcc-cc------chh------hcCCCccCEEECCCCcCCC--------------------Ch
Confidence 5788999999999999987 21 111 6789999999999998752 23
Q ss_pred ccccccCccceEeeccccCCC
Q psy17257 348 GLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 348 ~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+ ...++|+.|.+.+|.+.
T Consensus 195 ~l--~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 195 AL--AGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--TTCTTCSEEEEEEEEEE
T ss_pred hh--ccCCCCCEEECcCCccc
Confidence 44 25789999999998854
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=1.2e-12 Score=141.36 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred ceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCC
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCS 147 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~ 147 (778)
+++.|+|++|.++......+. .++|++|++++| .++......+ ..+++|++|++++|..
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKNHL 114 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSSCC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCCcC
Confidence 566666666655433222232 455666666665 3443211122 2345666666666654
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.34 E-value=8e-13 Score=152.53 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=96.2
Q ss_pred ceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
+|+.|+|++|.+++.....+. .++|++|++++| .+++.....+ ..+++|++|++++|.... .+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~---~~----------- 90 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAF-YSLGSLEHLDLSDNHLSS---LS----------- 90 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSCCCS---CC-----------
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhc-cccccCCEEECCCCccCc---cC-----------
Confidence 566677776666543333333 456677777766 4543221122 235667777776665431 11
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
...++.+++|++|++++|.+ +..+.+..+..+++|++|++++|... +.....
T Consensus 91 --------------------------~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~ 142 (549)
T 2z81_A 91 --------------------------SSWFGPLSSLKYLNLMGNPY-QTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRI 142 (549)
T ss_dssp --------------------------HHHHTTCTTCCEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSC-CEECTT
T ss_pred --------------------------HHHhccCCCCcEEECCCCcc-cccchhhhhhccCCccEEECCCCccc-cccCHh
Confidence 01125566666666666665 33222224555666666666666532 111112
Q ss_pred HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+.++ ++|++|++++|.+.+..+..+..+++|++|+++.|.. . .+ | ......+++|+.||+++|++.+
T Consensus 143 ~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~---~~---~----~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 143 DFAGL-TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-A---FL---L----EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-T---TH---H----HHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhcc-cccCeeeccCCcccccChhhhhccccCceEecccCcc-c---cc---c----hhhHhhcccccEEEccCCcccc
Confidence 35555 5666666666666655555566666666666666654 1 00 1 1123456666666666666554
No 62
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=3e-12 Score=127.57 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=66.3
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|++|++++|.+ ++..+. .+..+++|++|++++|.++ +. .+..+..+ ++|++|++++|.....++ .+..+
T Consensus 85 ~~l~~L~~L~l~~n~l-~~~~~~-~l~~l~~L~~L~Ls~n~i~-~~-~~~~l~~l-~~L~~L~L~~n~~i~~~~-~l~~l 158 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDV-TSDKIP-NLSGLTSLTLLDISHSAHD-DS-ILTKINTL-PKVNSIDLSYNGAITDIM-PLKTL 158 (197)
T ss_dssp TTCTTCCEEEEECTTC-BGGGSC-CCTTCTTCCEEECCSSBCB-GG-GHHHHTTC-SSCCEEECCSCTBCCCCG-GGGGC
T ss_pred hcCCCCCEEEeECCcc-CcccCh-hhcCCCCCCEEEecCCccC-cH-hHHHHhhC-CCCCEEEccCCCCccccH-hhcCC
Confidence 4566777777777766 443333 4556677777777777766 21 14456666 577777777776222222 46677
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
++|++|++++|.+ ++ + + .+..+++|+.|++++|++.
T Consensus 159 ~~L~~L~l~~n~i-~~---~---~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 159 PELKSLNIQFDGV-HD---Y---R------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEECTTBCC-CC---C---T------TGGGCSSCCEEEECBC---
T ss_pred CCCCEEECCCCCC-cC---h---H------HhccCCCCCEEEeeCcccC
Confidence 7788888887776 21 1 1 1567788888888888764
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.33 E-value=2.7e-12 Score=149.32 Aligned_cols=200 Identities=17% Similarity=0.178 Sum_probs=145.5
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc--cCCccEEec--------CCCCCCCHhHHHHHHhcCCCCceee
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL--SHHVQELEL--------IKCANVSQASLEVLNMSSDQLYSLS 141 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~--~~~L~~LdL--------s~~~~lt~~~l~~L~~~~~~L~~L~ 141 (778)
+++..+..+.. ..++|++|++++| +++.++..+. +++|++|++ .+|+.+++.++..+...+++|++|.
T Consensus 301 l~~~~l~~~~~-~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 301 VQSYDLVKLLC-QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCHHHHHHHHT-TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHh-cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 55554443222 3379999999998 8888887553 689999999 4456899988888887789999997
Q ss_pred cCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEec--C---CcccC---
Q psy17257 142 LGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLI--G---HTLMS--- 213 (778)
Q Consensus 142 Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls--~---~~l~s--- 213 (778)
++.+.. ++... ..+...+++|+.|+++ + |..++
T Consensus 379 ~~~~~l-~~~~~--------------------------------------~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 379 YFCRQM-TNAAL--------------------------------------ITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp EEESCC-CHHHH--------------------------------------HHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred HhcCCc-CHHHH--------------------------------------HHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 765543 22111 1233568999999999 3 33336
Q ss_pred -hhHHHHHhccCCCCCeEeccCccccCCcccchHHHh-ccccccEEEcCCCCCcchhhHhh-cCCCCccEEeccCCCCCC
Q psy17257 214 -QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE-FKDTLVSLVLFNVSIVKDNLDHI-CSLPLLRRLDISVSSDYP 290 (778)
Q Consensus 214 -~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~-l~~~L~~L~L~~~~~~~~~~~~l-~~L~~L~~LdLS~~~~~~ 290 (778)
+.++..++..+++|+.|++++ .++ +. .+..+.. + ++|+.|++++|.+++..+..+ ..+++|++|++++|.+ +
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~-~~-~~~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~ 494 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLT-DK-VFEYIGTYA-KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-G 494 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCC-HH-HHHHHHHHC-TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-C
T ss_pred hhhHHHHHHhhCCCccEEeecC-ccc-HH-HHHHHHHhc-hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-c
Confidence 567777888999999999987 555 32 3455665 5 789999999999887666555 6799999999999987 3
Q ss_pred CCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 291 DYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 291 ~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
+ ..+......+++|+.|++++|++..+
T Consensus 495 ~---------~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 495 D---------KALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp H---------HHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred H---------HHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 2 22333456789999999999988543
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=1.1e-12 Score=153.35 Aligned_cols=228 Identities=17% Similarity=0.113 Sum_probs=145.7
Q ss_pred CCceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhH--HHHHHhcCCCCceeecCCCCCCC-ccccchhhhhcc
Q psy17257 85 ITHMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQAS--LEVLNMSSDQLYSLSLGPHCSMF-PDCLESEVVVGE 161 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~--l~~L~~~~~~L~~L~Ls~c~~~~-~~~~~~~~~l~e 161 (778)
.++|+.|++++|...... .....++|++|++++| .++... ...+ ..+++|+.|++++|.... +....
T Consensus 327 l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n-~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~------- 396 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRN-ALSFSGCCSYSD-LGTNSLRHLDLSFNGAIIMSANFM------- 396 (606)
T ss_dssp CSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSS-CEEEEEECCHHH-HCCSCCCEEECCSCSEEEECCCCT-------
T ss_pred CCccceeeccCCcCccch-hhccCCCCCEEECcCC-ccCCCcchhhhh-ccCCcccEeECCCCccccchhhcc-------
Confidence 468999999998532211 1223678999999998 565432 1233 457899999999997641 11111
Q ss_pred ccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCc
Q psy17257 162 KQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDN 241 (778)
Q Consensus 162 ~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~ 241 (778)
.++..+.+... .+...+.. ....+..+++|+.|++++|.+ ++.. +..+..+++|+.|++++|.++ +.
T Consensus 397 ~l~~L~~L~l~-------~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~-~~ 463 (606)
T 3vq2_A 397 GLEELQHLDFQ-------HSTLKRVT---EFSAFLSLEKLLYLDISYTNT-KIDF-DGIFLGLTSLNTLKMAGNSFK-DN 463 (606)
T ss_dssp TCTTCCEEECT-------TSEEESTT---TTTTTTTCTTCCEEECTTSCC-EECC-TTTTTTCTTCCEEECTTCEEG-GG
T ss_pred CCCCCCeeECC-------CCccCCcc---ChhhhhccccCCEEECcCCCC-Cccc-hhhhcCCCCCCEEECCCCcCC-Cc
Confidence 01111111100 00001100 002237788999999999887 4422 335678899999999999887 31
Q ss_pred ccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 242 KDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 242 ~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
.....+..+ ++|++|++++|++++..+..+.++++|++|++++|++ ++ . .|. .+..+++|+.||+++|
T Consensus 464 ~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~--~---~~~-----~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 464 TLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL-LF--L---DSS-----HYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SC--E---EGG-----GTTTCTTCCEEECTTS
T ss_pred chHHhhccC-CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC-CC--c---CHH-----HccCCCcCCEEECCCC
Confidence 112246677 7899999999988876667788899999999999987 21 1 121 3677889999999999
Q ss_pred CCCCCccccccCCCCCCCCCccCCccccccccCc-cceEeeccccCCC
Q psy17257 322 NLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR-PLEFLGLYGTKHG 368 (778)
Q Consensus 322 ~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~-~L~~L~L~~t~~~ 368 (778)
++.+ +|..+. ..+ +|++|.+.+|++.
T Consensus 532 ~l~~--------------------~p~~~~-~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 532 RIET--------------------SKGILQ-HFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CCCC--------------------EESCGG-GSCTTCCEEECCSCCCC
T ss_pred cCcc--------------------cCHhHh-hhcccCcEEEccCCCcc
Confidence 8752 222232 444 5999999999865
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=1.1e-11 Score=123.55 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=129.2
Q ss_pred CCCChHHHHHHHHHHHhcCCcccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHH
Q psy17257 51 VKFPREISEKFLSMYEKSGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEV 129 (778)
Q Consensus 51 ~~LP~ei~~~ll~~l~~~~~~l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~ 129 (778)
..+|.......+........ ..+-....+ .+|+.|+++++.+++-. .+. .++|++|++++| .++.. ..
T Consensus 15 ~~~pd~~~~~~~~~~~~~~~-~~~i~~~~l-----~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n-~~~~~--~~ 83 (197)
T 4ezg_A 15 VNIPDSTFKAYLNGLLGQSS-TANITEAQM-----NSLTYITLANINVTDLT--GIEYAHNIKDLTINNI-HATNY--NP 83 (197)
T ss_dssp CCCCCHHHHHHHHHHHTCCT-TCCCBHHHH-----HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESC-CCSCC--GG
T ss_pred eecCcHHHHHHHHHHhCCCc-cccCChhhc-----CCccEEeccCCCccChH--HHhcCCCCCEEEccCC-CCCcc--hh
Confidence 45777766665554332221 333222222 57999999999987522 233 679999999999 56543 23
Q ss_pred HHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCC
Q psy17257 130 LNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGH 209 (778)
Q Consensus 130 L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~ 209 (778)
+ ..+++|++|++++|.... ..+ ..+..+++|+.|++++|
T Consensus 84 l-~~l~~L~~L~l~~n~l~~--~~~--------------------------------------~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 84 I-SGLSNLERLRIMGKDVTS--DKI--------------------------------------PNLSGLTSLTLLDISHS 122 (197)
T ss_dssp G-TTCTTCCEEEEECTTCBG--GGS--------------------------------------CCCTTCTTCCEEECCSS
T ss_pred h-hcCCCCCEEEeECCccCc--ccC--------------------------------------hhhcCCCCCCEEEecCC
Confidence 3 357899999999997641 111 11267899999999999
Q ss_pred cccChhHHHHHhccCCCCCeEeccCcc-ccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 210 TLMSQSICTQLYRDMPHLTHLNLSKCM-FLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 210 ~l~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
.+ ++..+. .+..+++|++|++++|. ++ +++.+..+ ++|+.|++++|.+++ +..+..+++|++|++++|++
T Consensus 123 ~i-~~~~~~-~l~~l~~L~~L~L~~n~~i~----~~~~l~~l-~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 123 AH-DDSILT-KINTLPKVNSIDLSYNGAIT----DIMPLKTL-PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp BC-BGGGHH-HHTTCSSCCEEECCSCTBCC----CCGGGGGC-SSCCEEECTTBCCCC--CTTGGGCSSCCEEEECBC--
T ss_pred cc-CcHhHH-HHhhCCCCCEEEccCCCCcc----ccHhhcCC-CCCCEEECCCCCCcC--hHHhccCCCCCEEEeeCccc
Confidence 99 665554 67889999999999998 77 67788888 799999999999876 22688899999999999987
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=9.6e-13 Score=141.38 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=152.1
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|++|.+++.. .+. .++|++|++++| .+++-. ..++|+.|++++|.....
T Consensus 46 l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~l~------~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 46 LSQISAADLAPF--TKLELLNLSSNVLYETL--DLESLSTLRTLDLNNN-YVQELL------VGPSIETLHAANNNISRV 114 (317)
T ss_dssp CCCCCHHHHTTC--TTCCEEECTTSCCEEEE--EETTCTTCCEEECCSS-EEEEEE------ECTTCCEEECCSSCCSEE
T ss_pred cCcCCHHHhhCC--CcCCEEECCCCcCCcch--hhhhcCCCCEEECcCC-cccccc------CCCCcCEEECCCCccCCc
Confidence 555545566543 68999999999876422 133 578999999998 465321 347899999998876411
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
.. ...+..+.+.. +.+...+ + .......+++|+.|++++|.+ ++.....+...+++|++|
T Consensus 115 --~~------~~~~~L~~L~l-------~~N~l~~-~---~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 115 --SC------SRGQGKKNIYL-------ANNKITM-L---RDLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHL 174 (317)
T ss_dssp --EE------CCCSSCEEEEC-------CSSCCCS-G---GGBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEE
T ss_pred --Cc------cccCCCCEEEC-------CCCCCCC-c---cchhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEE
Confidence 00 00111111110 0111111 0 111236789999999999999 665555455689999999
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
++++|.++ .++....+ ++|+.|++++|++++ .+..+..+++|++||+++|.+ + .+ |. .+..+
T Consensus 175 ~L~~N~l~----~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l-~---~l---~~-----~~~~l 236 (317)
T 3o53_A 175 NLQYNFIY----DVKGQVVF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-V---LI---EK-----ALRFS 236 (317)
T ss_dssp ECTTSCCC----EEECCCCC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC-C---EE---CT-----TCCCC
T ss_pred ECCCCcCc----cccccccc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc-c---ch---hh-----HhhcC
Confidence 99999998 56555556 799999999999875 344588899999999999987 2 12 21 25788
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeecccc
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGT 365 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t 365 (778)
++|+.||+++|.+..+. +|.+.. ..++|+.|.+.++
T Consensus 237 ~~L~~L~l~~N~~~~~~------------------~~~~~~-~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGT------------------LRDFFS-KNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCEEECTTCCCBHHH------------------HHHHHH-TCHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcC------------------HHHHHh-ccccceEEECCCc
Confidence 99999999999986221 234553 6788888888743
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=1.2e-11 Score=129.76 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=133.0
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
..+|++|+++++ .++. +..+ ..+++|+.|++++|.... ..
T Consensus 40 l~~L~~L~l~~~-~i~~--~~~l-~~l~~L~~L~l~~n~l~~---~~--------------------------------- 79 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKS--VQGI-QYLPNVRYLALGGNKLHD---IS--------------------------------- 79 (272)
T ss_dssp HTTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECTTSCCCC---CG---------------------------------
T ss_pred ccceeeeeeCCC-Cccc--cccc-ccCCCCcEEECCCCCCCC---ch---------------------------------
Confidence 468999999998 4653 2233 357899999999997641 11
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCc
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~ 265 (778)
.+ ..+++|++|++++|.+ ++.. ...+..+++|++|++++|.++ .+. .+..+ ++|++|++++|.++
T Consensus 80 -----~l-~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l-~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 80 -----AL-KELTNLTYLILTGNQL-QSLP-NGVFDKLTNLKELVLVENQLQ----SLPDGVFDKL-TNLTYLNLAHNQLQ 146 (272)
T ss_dssp -----GG-TTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECTTSCCC----CCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred -----hh-cCCCCCCEEECCCCcc-CccC-hhHhcCCcCCCEEECCCCcCC----ccCHHHhccC-CCCCEEECCCCccC
Confidence 12 6789999999999998 5422 235678999999999999998 343 36777 79999999999988
Q ss_pred chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCC
Q psy17257 266 KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTD 345 (778)
Q Consensus 266 ~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~ 345 (778)
+.....+..+++|++|++++|.+ ++ . .+. .+..+++|+.|++++|.+.+- .+
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l-~~---~--~~~-----~~~~l~~L~~L~L~~N~l~~~--~~--------------- 198 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQL-QS---L--PEG-----VFDKLTQLKDLRLYQNQLKSV--PD--------------- 198 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCC-CC---C--CTT-----TTTTCTTCCEEECCSSCCSCC--CT---------------
T ss_pred ccCHHHhccCccCCEEECCCCCc-Cc---c--CHH-----HhcCCccCCEEECCCCcCCcc--CH---------------
Confidence 65555578999999999999987 21 1 111 257899999999999988642 11
Q ss_pred ccccccccCccceEeeccccCCC
Q psy17257 346 IPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 346 i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
... ...++|++|.|.+|+..
T Consensus 199 --~~~-~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 199 --GVF-DRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp --TTT-TTCTTCCEEECCSSCBC
T ss_pred --HHH-hCCcCCCEEEccCCCcc
Confidence 223 25688999999998743
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=2.4e-12 Score=135.09 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=138.3
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
+++.....|... ++|+.|+|++|.++......+. .++|++|++++| .++......+ ..+++|+.|++++|.....
T Consensus 40 l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~ 115 (276)
T 2z62_A 40 LRHLGSYSFFSF--PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF-SGLSSLQKLVAVETNLASL 115 (276)
T ss_dssp CCEECTTTTTTC--TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTSCCCCS
T ss_pred ccccCHhHhccc--cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhh-cCCccccEEECCCCCcccc
Confidence 554444455543 6899999999998754444454 679999999998 5664332223 3578999999999976421
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
... . +..+++|+.|++++|.+ +...++..+..+++|++|
T Consensus 116 ~~~---------------------------------------~-~~~l~~L~~L~l~~n~l-~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 116 ENF---------------------------------------P-IGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTC---------------------------------------C-CTTCTTCCEEECCSSCC-CCCCCCGGGGGCTTCCEE
T ss_pred Cch---------------------------------------h-cccCCCCCEEECcCCcc-ceecCchhhccCCCCCEE
Confidence 100 1 26789999999999998 553444577889999999
Q ss_pred eccCccccCCcccchHHHhcccccc----EEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHH
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLV----SLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI 306 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~----~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~ 306 (778)
++++|.++ +. ....+..+ .+|+ +|++++|.+... +.......+|++|++++|.+ +. + |. ..
T Consensus 155 ~Ls~N~l~-~~-~~~~~~~l-~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l-~~---~---~~----~~ 219 (276)
T 2z62_A 155 DLSSNKIQ-SI-YCTDLRVL-HQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQL-KS---V---PD----GI 219 (276)
T ss_dssp ECCSSCCC-EE-CGGGGHHH-HTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCC-SC---C---CT----TT
T ss_pred ECCCCCCC-cC-CHHHhhhh-hhccccceeeecCCCccccc-CccccCCCcccEEECCCCce-ee---c---CH----hH
Confidence 99999987 21 11234455 4555 899999998753 33344556899999999997 21 1 11 13
Q ss_pred HhcCCCCCEEeecCCCCCCC
Q psy17257 307 IFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 307 ~~~lp~L~~LDLSgn~l~~~ 326 (778)
+..+++|+.|++++|++..+
T Consensus 220 ~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTTCCSCCEEECCSSCBCCC
T ss_pred hcccccccEEEccCCccccc
Confidence 57899999999999998754
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=2.5e-12 Score=133.23 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=128.2
Q ss_pred ceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRAD 166 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~ 166 (778)
..+.++++++.++.-. ..+ ..+++.|++++| .++......+ ..+++|+.|+|++|.+.. ..
T Consensus 15 ~~~~l~~~~~~l~~~p-~~~-~~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~---~~------------ 75 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP-SGI-PADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYNQLQT---LS------------ 75 (251)
T ss_dssp GGTEEECTTCCCSSCC-SCC-CTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSCCCC---CC------------
T ss_pred CCeEEecCCCCccccC-CCC-CCCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCCcCCc---cC------------
Confidence 4567888877665211 111 368999999998 4654322223 356899999999987642 11
Q ss_pred cccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH
Q psy17257 167 DFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF 246 (778)
Q Consensus 167 ~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~ 246 (778)
...+..+++|+.|++++|.+ +... ...+..+++|++|++++|.++ .++.
T Consensus 76 -------------------------~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~N~l~----~~~~ 124 (251)
T 3m19_A 76 -------------------------AGVFDDLTELGTLGLANNQL-ASLP-LGVFDHLTQLDKLYLGGNQLK----SLPS 124 (251)
T ss_dssp -------------------------TTTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCT
T ss_pred -------------------------HhHhccCCcCCEEECCCCcc-cccC-hhHhcccCCCCEEEcCCCcCC----CcCh
Confidence 01126789999999999998 5432 236678999999999999988 4432
Q ss_pred --HHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 247 --LAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 247 --L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+..+ ++|+.|+|++|++..-....+..+++|++||+++|.+ +. + + + ..+..+++|+.|++++|.+.
T Consensus 125 ~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~---~-~-~-----~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 125 GVFDRL-TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QS---V-P-H-----GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SC---C-C-T-----TTTTTCTTCCEEECCSCCBC
T ss_pred hHhccC-CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC-Cc---c-C-H-----HHHhCCCCCCEEEeeCCcee
Confidence 5677 7999999999998765455688899999999999987 21 1 1 1 12678999999999999987
Q ss_pred CC
Q psy17257 325 GR 326 (778)
Q Consensus 325 ~~ 326 (778)
.+
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=141.92 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=85.7
Q ss_pred hcCCCccEEEecCCcccCh-hHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQ-SICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~-~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l 272 (778)
..+++|+.|++++|.+ ++ ..++..+..+++|+.||+++|.++ +. ++ .+..+ ++|+.|++++|.+++..+..+
T Consensus 345 ~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~--l~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 345 GHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVS-YD--EKKGDCSWT-KSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCB-CC--GGGCSCCCC-TTCCEEECCSSCCCGGGGGSC
T ss_pred ccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCC-cc--cccchhccC-ccCCEEECcCCCCCcchhhhh
Confidence 6777788888888777 43 234446677788888888887776 21 32 24445 578888888877765554443
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccc
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASR 352 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~ 352 (778)
. ++|++||+++|.+ + .+ |. .+..+++|+.||+++|++.+ +.. ... .
T Consensus 420 ~--~~L~~L~Ls~N~l-~---~i---p~-----~~~~l~~L~~L~L~~N~l~~--l~~-----------------~~~-~ 465 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKI-K---SI---PK-----QVVKLEALQELNVASNQLKS--VPD-----------------GIF-D 465 (520)
T ss_dssp C--TTCCEEECCSSCC-C---CC---CG-----GGGGCTTCCEEECCSSCCCC--CCT-----------------TTT-T
T ss_pred c--ccCCEEECCCCcc-c---cc---ch-----hhhcCCCCCEEECCCCcCCc--cCH-----------------HHh-c
Confidence 3 6788888888776 2 11 21 23477888888888887652 111 112 2
Q ss_pred cCccceEeeccccCCC
Q psy17257 353 VDRPLEFLGLYGTKHG 368 (778)
Q Consensus 353 ~~~~L~~L~L~~t~~~ 368 (778)
..++|+.|.|.+|++.
T Consensus 466 ~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TCTTCCEEECCSSCBC
T ss_pred cCCcccEEECcCCCCc
Confidence 4577888888888743
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.6e-11 Score=138.97 Aligned_cols=212 Identities=19% Similarity=0.148 Sum_probs=146.4
Q ss_pred CCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccc
Q psy17257 85 ITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQ 163 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~ 163 (778)
.++|+.|++++|.+++. ..+. .++|++|++++| .+++... + ..+++|+.|++++|......... .+
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~l~-------~l 242 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN-QISDITP--L-GILTNLDELSLNGNQLKDIGTLA-------SL 242 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--G-GGCTTCCEEECCSSCCCCCGGGG-------GC
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC-ccccccc--c-cccCCCCEEECCCCCcccchhhh-------cC
Confidence 36899999999987753 2343 678999999998 4654321 2 45789999999999765211111 11
Q ss_pred ccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCccc
Q psy17257 164 RADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKD 243 (778)
Q Consensus 164 p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~ 243 (778)
+..+.+..+ .+...+. .. +..+++|+.|++++|.+ ++.. .+..+++|+.|++++|.++ .
T Consensus 243 ~~L~~L~l~-------~n~l~~~-----~~-~~~l~~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~L~~n~l~----~ 301 (466)
T 1o6v_A 243 TNLTDLDLA-------NNQISNL-----AP-LSGLTKLTELKLGANQI-SNIS---PLAGLTALTNLELNENQLE----D 301 (466)
T ss_dssp TTCSEEECC-------SSCCCCC-----GG-GTTCTTCSEEECCSSCC-CCCG---GGTTCTTCSEEECCSSCCS----C
T ss_pred CCCCEEECC-------CCccccc-----hh-hhcCCCCCEEECCCCcc-Cccc---cccCCCccCeEEcCCCccc----C
Confidence 111111111 1111111 12 37889999999999988 5422 2678999999999999998 5
Q ss_pred chHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 244 LSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 244 l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
+..+..+ ++|+.|++++|++++..+ +..+++|+.|++++|.+ ++ . + .+..+++|+.|++++|.+
T Consensus 302 ~~~~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~---~---~------~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 302 ISPISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-SD---V---S------SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CGGGGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC-CC---C---G------GGTTCTTCCEEECCSSCC
T ss_pred chhhcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc-CC---c---h------hhccCCCCCEEeCCCCcc
Confidence 6667788 799999999999876433 67899999999999987 21 1 1 267899999999999987
Q ss_pred CCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 324 AGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 324 ~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+. + .+ ...++|+.|++.+|.+.
T Consensus 366 ~~~-------------------~-~~--~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 366 SDL-------------------T-PL--ANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CBC-------------------G-GG--TTCTTCCEEECCCEEEE
T ss_pred Ccc-------------------c-hh--hcCCCCCEEeccCCccc
Confidence 531 1 23 25678888888887643
No 72
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.29 E-value=1.5e-12 Score=153.46 Aligned_cols=110 Identities=10% Similarity=0.105 Sum_probs=75.2
Q ss_pred hcCCCccEEEecCCc-ccChhHHHHHhccC------CCCCeEeccCccccCCcccch---HHHhccccccEEEcCCCCCc
Q psy17257 196 LKAPKLRRFSLIGHT-LMSQSICTQLYRDM------PHLTHLNLSKCMFLFDNKDLS---FLAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~-l~s~~~l~~~~~~l------p~L~~LdLS~~~i~~~~~~l~---~L~~l~~~L~~L~L~~~~~~ 265 (778)
.++++|+.|++++|. + ++..++..+..+ ++|++|++++|.++ .++ .+.++ ++|+.|++++|.+.
T Consensus 270 ~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----~ip~~~~l~~l-~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 270 KALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----TFPVETSLQKM-KKLGMLECLYNQLE 343 (636)
T ss_dssp TTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----SCCCHHHHTTC-TTCCEEECCSCCCE
T ss_pred hcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCCEEECCCCcCC----ccCchhhhccC-CCCCEEeCcCCcCc
Confidence 677888888888887 5 552334344443 78888888888776 443 46677 67888888888877
Q ss_pred chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCC-CCEEeecCCCCC
Q psy17257 266 KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH-LVSLDISGTNLA 324 (778)
Q Consensus 266 ~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~-L~~LDLSgn~l~ 324 (778)
+.++ .+..+++|++|++++|.+ + .+ |. .+..+++ |+.||+++|.+.
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l-~---~l---p~-----~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQI-T---EI---PA-----NFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEE-E---EC---CT-----TSEEECTTCCEEECCSSCCS
T ss_pred cchh-hhCCCCCCCEEECCCCcc-c---cc---cH-----hhhhhcccCcEEEccCCcCc
Confidence 5555 677777788888877765 1 11 21 2566777 888888888765
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=2.4e-11 Score=137.37 Aligned_cols=214 Identities=15% Similarity=0.113 Sum_probs=117.3
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|+++++.+++. ..+. .++|++|++++| .+++.. + ..+++|++|++++|.+... ... ..+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n-~l~~~~---~-~~l~~L~~L~Ls~N~l~~~-~~~-------~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSN-NITTLD---L-SQNTNLTYLACDSNKLTNL-DVT-------PLT 106 (457)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSS-CCSCCC---C-TTCTTCSEEECCSSCCSCC-CCT-------TCT
T ss_pred CCCCEEEccCCCcccC--hhhcccCCCCEEEccCC-cCCeEc---c-ccCCCCCEEECcCCCCcee-ecC-------CCC
Confidence 5899999999988753 2343 678999999998 576532 2 4578999999999976421 110 001
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+..+ .+...+ + . +..+++|+.|++++|.+ ++- -+..+++|+.|++++|... + .+
T Consensus 107 ~L~~L~L~-------~N~l~~-l-----~-~~~l~~L~~L~l~~N~l-~~l----~l~~l~~L~~L~l~~n~~~-~--~~ 164 (457)
T 3bz5_A 107 KLTYLNCD-------TNKLTK-L-----D-VSQNPLLTYLNCARNTL-TEI----DVSHNTQLTELDCHLNKKI-T--KL 164 (457)
T ss_dssp TCCEEECC-------SSCCSC-C-----C-CTTCTTCCEEECTTSCC-SCC----CCTTCTTCCEEECTTCSCC-C--CC
T ss_pred cCCEEECC-------CCcCCe-e-----c-CCCCCcCCEEECCCCcc-cee----ccccCCcCCEEECCCCCcc-c--cc
Confidence 00111000 000010 0 1 14555666666666655 331 1345556666666655332 1 12
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
.+..+ ++|+.|++++|++++ ++ +..+++|++|++++|.+ +. . + +..+++|+.||+++|.+.
T Consensus 165 -~~~~l-~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l-~~---~---~-------l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 165 -DVTPQ-TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI-TK---L---D-------LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp -CCTTC-TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC-SC---C---C-------CTTCTTCSEEECCSSCCS
T ss_pred -ccccC-CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC-Ce---e---c-------cccCCCCCEEECcCCccc
Confidence 23344 456666666665544 11 45556666666666655 11 0 0 345666666666666554
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCCCccccCCCce
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGASHRHDIPAL 378 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~~~~~~~i~~l 378 (778)
+ +| + ...++|++|.+.+|.+..-....++.+
T Consensus 226 ~--------------------ip-~--~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 226 E--------------------ID-V--TPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp C--------------------CC-C--TTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred c--------------------cC-c--cccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 2 34 3 256889999999888654333333433
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.29 E-value=2.7e-12 Score=136.23 Aligned_cols=176 Identities=16% Similarity=0.096 Sum_probs=132.6
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++......+. .++|++|++++| .++.... . ..+++|+.|++++|.+. .++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~Ls~N~l~---~l~---------- 93 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--D-GTLPVLGTLDLSHNQLQ---SLP---------- 93 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--C-SCCTTCCEEECCSSCCS---SCC----------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--C-CCCCcCCEEECCCCcCC---cCc----------
Confidence 4799999999998765444454 689999999998 5764221 1 46789999999999764 221
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
.....+++|+.|++++|.+ +.-. +..+..+++|+.|++++|.++ .+
T Consensus 94 ----------------------------~~~~~l~~L~~L~l~~N~l-~~l~-~~~~~~l~~L~~L~L~~N~l~----~~ 139 (290)
T 1p9a_G 94 ----------------------------LLGQTLPALTVLDVSFNRL-TSLP-LGALRGLGELQELYLKGNELK----TL 139 (290)
T ss_dssp ----------------------------CCTTTCTTCCEEECCSSCC-CCCC-SSTTTTCTTCCEEECTTSCCC----CC
T ss_pred ----------------------------hhhccCCCCCEEECCCCcC-cccC-HHHHcCCCCCCEEECCCCCCC----cc
Confidence 1126789999999999998 5422 235778999999999999998 44
Q ss_pred h--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 245 S--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 245 ~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
+ .+..+ ++|+.|+|++|+++.-....+..+++|++|++++|.+ + .+ |. .+..+++|+.|++++|.
T Consensus 140 ~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~---~i---p~-----~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 140 PPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-Y---TI---PK-----GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC-C---CC---CT-----TTTTTCCCSEEECCSCC
T ss_pred Chhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC-C---cc---Ch-----hhcccccCCeEEeCCCC
Confidence 3 25677 7999999999998754344567899999999999998 2 11 21 24567899999999998
Q ss_pred CCC
Q psy17257 323 LAG 325 (778)
Q Consensus 323 l~~ 325 (778)
+.-
T Consensus 207 ~~C 209 (290)
T 1p9a_G 207 WLC 209 (290)
T ss_dssp BCC
T ss_pred ccC
Confidence 764
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.28 E-value=1.5e-11 Score=141.71 Aligned_cols=126 Identities=21% Similarity=0.146 Sum_probs=81.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ +. ++..+..+++|++|++++|.++ .++... . ++|++|++++|++++. +..+
T Consensus 384 ~~l~~L~~L~Ls~N~l-~~--lp~~~~~~~~L~~L~Ls~N~l~----~l~~~~-~-~~L~~L~Ls~N~l~~~----~~~l 450 (549)
T 2z81_A 384 LTLKNLTSLDISRNTF-HP--MPDSCQWPEKMRFLNLSSTGIR----VVKTCI-P-QTLEVLDVSNNNLDSF----SLFL 450 (549)
T ss_dssp GGCTTCCEEECTTCCC-CC--CCSCCCCCTTCCEEECTTSCCS----CCCTTS-C-TTCSEEECCSSCCSCC----CCCC
T ss_pred hcCCCCCEEECCCCCC-cc--CChhhcccccccEEECCCCCcc----cccchh-c-CCceEEECCCCChhhh----cccC
Confidence 5667777777777776 32 3334556677777777777766 333211 1 4677777777776542 2567
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++||+++|++ + .+ |. ...+++|+.||+++|++.+ + +|... ...+
T Consensus 451 ~~L~~L~Ls~N~l-~---~i---p~------~~~l~~L~~L~Ls~N~l~~--~-----------------~~~~~-~~l~ 497 (549)
T 2z81_A 451 PRLQELYISRNKL-K---TL---PD------ASLFPVLLVMKISRNQLKS--V-----------------PDGIF-DRLT 497 (549)
T ss_dssp TTCCEEECCSSCC-S---SC---CC------GGGCTTCCEEECCSSCCCC--C-----------------CTTGG-GGCT
T ss_pred ChhcEEECCCCcc-C---cC---CC------cccCccCCEEecCCCccCC--c-----------------CHHHH-hcCc
Confidence 8888888888876 2 12 21 3467888888888887753 1 12233 2568
Q ss_pred cceEeeccccCC
Q psy17257 356 PLEFLGLYGTKH 367 (778)
Q Consensus 356 ~L~~L~L~~t~~ 367 (778)
+|+.|.|.+|+.
T Consensus 498 ~L~~L~l~~N~~ 509 (549)
T 2z81_A 498 SLQKIWLHTNPW 509 (549)
T ss_dssp TCCEEECCSSCB
T ss_pred ccCEEEecCCCc
Confidence 899999998884
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.27 E-value=2.6e-11 Score=141.67 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=133.7
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
..+|+.|++++| .++.- ..+ ..+++|+.|+|++|.+.. .+
T Consensus 42 L~~L~~L~l~~n-~i~~l--~~l-~~l~~L~~L~Ls~N~l~~---~~--------------------------------- 81 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSV--QGI-QYLPNVTKLFLNGNKLTD---IK--------------------------------- 81 (605)
T ss_dssp HTTCCCCBCTTC-CCCCC--TTG-GGCTTCCEEECTTSCCCC---CG---------------------------------
T ss_pred CCCCCEEECcCC-CCCCC--hHH-ccCCCCCEEEeeCCCCCC---Ch---------------------------------
Confidence 357999999998 46532 233 457899999999997641 11
Q ss_pred ccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcch
Q psy17257 188 TYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~ 267 (778)
. +..+++|+.|+|++|.+ ++ ++ .+..+++|+.|+|++|.+. .++.+..+ ++|+.|+|++|.+.+.
T Consensus 82 -----~-l~~l~~L~~L~Ls~N~l-~~--l~-~l~~l~~L~~L~Ls~N~l~----~l~~l~~l-~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 82 -----P-LTNLKNLGWLFLDENKI-KD--LS-SLKDLKKLKSLSLEHNGIS----DINGLVHL-PQLESLYLGNNKITDI 146 (605)
T ss_dssp -----G-GGGCTTCCEEECCSSCC-CC--CT-TSTTCTTCCEEECTTSCCC----CCGGGGGC-TTCSEEECCSSCCCCC
T ss_pred -----h-hccCCCCCEEECcCCCC-CC--Ch-hhccCCCCCEEEecCCCCC----CCccccCC-CccCEEECCCCccCCc
Confidence 1 26789999999999998 54 23 5778999999999999998 67788888 7999999999998763
Q ss_pred hhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCcc
Q psy17257 268 NLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIP 347 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~ 347 (778)
..+..+++|++|+|++|.+ + +. +. +..+++|+.|||++|.+.+ +|
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l-~--~~----~~------l~~l~~L~~L~Ls~N~i~~--------------------l~ 191 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQI-S--DI----VP------LAGLTKLQNLYLSKNHISD--------------------LR 191 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCC-C--CC----GG------GTTCTTCCEEECCSSCCCB--------------------CG
T ss_pred --hhhcccCCCCEEECcCCcC-C--Cc----hh------hccCCCCCEEECcCCCCCC--------------------Ch
Confidence 6788999999999999987 2 11 11 6789999999999998753 23
Q ss_pred ccccccCccceEeeccccCCC
Q psy17257 348 GLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 348 ~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.+. ..++|+.|.|.+|.+.
T Consensus 192 ~l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 192 ALA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp GGT--TCTTCSEEECCSEEEE
T ss_pred HHc--cCCCCCEEEccCCcCc
Confidence 342 5688999999998854
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=3.5e-12 Score=154.41 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=77.1
Q ss_pred hhcCCCccEEEecCCc-ccChhHHHHHhc-------cCCCCCeEeccCccccCCcccch---HHHhccccccEEEcCCCC
Q psy17257 195 ILKAPKLRRFSLIGHT-LMSQSICTQLYR-------DMPHLTHLNLSKCMFLFDNKDLS---FLAEFKDTLVSLVLFNVS 263 (778)
Q Consensus 195 ~~~l~~L~~L~Ls~~~-l~s~~~l~~~~~-------~lp~L~~LdLS~~~i~~~~~~l~---~L~~l~~~L~~L~L~~~~ 263 (778)
+.++++|+.|++++|. + ++..++..+. .+|+|+.|++++|.++ .++ .+.++ ++|+.|+|++|.
T Consensus 511 l~~L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L-~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKM-VKLGLLDCVHNK 584 (876)
T ss_dssp GGGCSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTC-TTCCEEECTTSC
T ss_pred HhCCCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcC-CCCCEEECCCCC
Confidence 3778888888888887 5 5522333333 4458888888888887 454 37777 688888888888
Q ss_pred CcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCC-CCEEeecCCCCC
Q psy17257 264 IVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH-LVSLDISGTNLA 324 (778)
Q Consensus 264 ~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~-L~~LDLSgn~l~ 324 (778)
++ .++ .++.+++|++|++++|.+ + .+ |. .+..+++ |+.|++++|.+.
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l-~---~l---p~-----~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQI-E---EI---PE-----DFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCC-S---CC---CT-----TSCEECTTCCEEECCSSCCC
T ss_pred cc-cch-hhcCCCcceEEECcCCcc-c---cc---hH-----HHhhccccCCEEECcCCCCC
Confidence 77 455 777888888888888876 2 11 21 2567777 888888888765
No 78
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.27 E-value=4.6e-10 Score=128.65 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=165.3
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+..++.++.. +.+....+.+.|.+..++++++.. ...+..-+..+++|+...++..+..+++.|++.
T Consensus 246 ~~v~~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 246 PEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGAT-----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HHHHHHHHHHHHHHTSS-CHHHHHHHHTTTCHHHHHHHHTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHhhc-hhhhHHHHHhcccchhhhhhhcCC-----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 56777777777776643 555666677788888888877532 134556788899999988999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+.+.|.. .+++++....+.|+|++.- .+.+..+.....+..+..+|.+ .+.+|...||++|+++++.+.
T Consensus 320 ~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~----- 390 (510)
T 3ul1_B 320 VFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGT----- 390 (510)
T ss_dssp GCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCC-----
Confidence 99998874 4778999999999999864 5566677788899999999998 478999999999999998652
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc-----cCCccccchhhhhch
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK-----VYPEKYCQVVEAEGG 765 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~-----~~~~~y~~~~~~e~g 765 (778)
...+ ..|+ ..--..|++.||.. .-+.++.=|+|||.+++. ...++|+.|+++.||
T Consensus 391 -~~~~----~~L~--------------~~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 450 (510)
T 3ul1_B 391 -VEQI----VYLV--------------HCGIIEPLMNLLSA-KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450 (510)
T ss_dssp -HHHH----HHHH--------------HTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred -HHHH----HHHH--------------HCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence 1111 2222 23456899999985 457888899999999885 234689999999999
Q ss_pred HHHHHHHhhccC
Q psy17257 766 IELLQNLLDNEN 777 (778)
Q Consensus 766 ~~~l~~~~~~~~ 777 (778)
++.|++|..|++
T Consensus 451 l~~ie~Lq~~~n 462 (510)
T 3ul1_B 451 LDKIEALQRHEN 462 (510)
T ss_dssp HHHHHHGGGCSS
T ss_pred HHHHHHHHcCCC
Confidence 999999999875
No 79
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.25 E-value=1.4e-10 Score=133.32 Aligned_cols=308 Identities=17% Similarity=0.223 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCc-
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQ- 502 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~- 502 (778)
.++..++..++. .+..++..+..+|.+|+...... -..-....++..|+..+...+ +..++++++.+|.+..--.
T Consensus 160 g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 160 GAVPIFVKLLGS--SSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSS
T ss_pred CcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCC
Confidence 356666666665 35578999999999998652100 000111235667777775444 5678888877766543221
Q ss_pred ccccc-HHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccch
Q psy17257 503 DVQFD-YDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDD 581 (778)
Q Consensus 503 ~~~f~-~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~ 581 (778)
...+. ...+...++..+.. . | +.++.-|+..++.++.. +.+....+.+.|.+..++++++.. ...
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~-~-~------~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~-----~~~ 301 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHS-N-D------EEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHP-----SPS 301 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTC-C-C------HHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCS-----CHH
T ss_pred CCcHHHHHHHHHHHHHHHCC-C-C------HHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCC-----Chh
Confidence 11111 22233344444432 2 5 77888888888888754 555566666778899998887643 135
Q ss_pred hHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhh
Q psy17257 582 ILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLV 660 (778)
Q Consensus 582 ~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll 660 (778)
+.+-+..+|+|++..++.....+++.++++.+++.|..- .++.++....+.|+|++.. .+....++....+..+..+|
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 567788999999999999999999999999999999842 2788999999999999963 44555677788899999999
Q ss_pred ccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHH
Q psy17257 661 SSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHW 740 (778)
Q Consensus 661 ~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~w 740 (778)
.+. +.+|...|+++|++++..|. . +..+.+++ ..-..|++.+|.. ..+.++.+
T Consensus 381 ~~~--~~~v~~~a~~aL~nl~~~~~------~----~~~~~l~~--------------~~~i~~L~~lL~~-~d~~v~~~ 433 (528)
T 4b8j_A 381 QTA--EFDIKKEAAWAISNATSGGS------H----DQIKYLVS--------------EGCIKPLCDLLIC-PDIRIVTV 433 (528)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHSC------H----HHHHHHHH--------------TTCHHHHHHGGGC-SCHHHHHH
T ss_pred hcC--CHHHHHHHHHHHHHHHcCCC------H----HHHHHHHH--------------CCCHHHHHHHHcC-CCHHHHHH
Confidence 884 67999999999999998642 1 11222221 2346899999986 67899999
Q ss_pred HHHHHHHhcccCC----------ccccchhhhhchHHHHHHHhhccC
Q psy17257 741 SVWALANLTKVYP----------EKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 741 a~wa~~~~~~~~~----------~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
|+|||.+++...+ +.||.++.+.||++.|.++..|++
T Consensus 434 al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~ 480 (528)
T 4b8j_A 434 CLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN 480 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999998543 369999999999999999998875
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.25 E-value=4.6e-12 Score=146.64 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=134.0
Q ss_pred ceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccc
Q psy17257 87 HMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRAD 166 (778)
Q Consensus 87 ~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~ 166 (778)
+|+.|++++|.++. +.....++|++|++++|. ++..... ..+++|+.|++++|........+.. . ..++..
T Consensus 305 ~L~~L~l~~n~~~~--l~~~~l~~L~~L~l~~n~-~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~--~-~~~~~L 375 (570)
T 2z63_A 305 GWQHLELVNCKFGQ--FPTLKLKSLKRLTFTSNK-GGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQS--D-FGTTSL 375 (570)
T ss_dssp CCSEEEEESCBCSS--CCBCBCSSCCEEEEESCB-SCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHH--H-HTCSCC
T ss_pred CccEEeeccCcccc--cCcccccccCEEeCcCCc-ccccccc---ccCCCCCEEeCcCCccCcccccccc--c-cccCcc
Confidence 78888888888762 111235677777777763 3321100 3466777777777765421100100 0 001111
Q ss_pred cccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH
Q psy17257 167 DFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF 246 (778)
Q Consensus 167 ~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~ 246 (778)
+.+.... + .+...... +..+++|+.|++++|.+ ++......+..+++|++|++++|.+. +. ....
T Consensus 376 ~~L~l~~-------n----~l~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~ 440 (570)
T 2z63_A 376 KYLDLSF-------N----GVITMSSN-FLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR-VA-FNGI 440 (570)
T ss_dssp CEEECCS-------C----SEEEEEEE-EETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSCCE-EC-CTTT
T ss_pred CEEECCC-------C----cccccccc-ccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCccc-cc-chhh
Confidence 1110000 0 00000012 36788888888888887 44322235667888888998888876 21 1234
Q ss_pred HHhccccccEEEcCCCCCcc-hhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 247 LAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 247 L~~l~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
+..+ ++|++|++++|.+++ ..+..+..+++|++||+++|.+ ++ .. |. .+..+++|+.|++++|.+.+
T Consensus 441 ~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~--~~---~~-----~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 441 FNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQ--LS---PT-----AFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CE--EC---TT-----TTTTCTTCCEEECCSSCCSC
T ss_pred hhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc-cc--CC---hh-----hhhcccCCCEEeCCCCcCCC
Confidence 5667 688899998888763 4566678888899999988887 21 11 11 25678889999999988754
Q ss_pred CccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 326 RGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 326 ~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
.. |... ...++|+.|.+.+|++.
T Consensus 509 ~~-------------------~~~~-~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 509 VP-------------------DGIF-DRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CC-------------------TTTT-TTCTTCCEEECCSSCBC
T ss_pred CC-------------------HHHh-hcccCCcEEEecCCccc
Confidence 21 1222 25678999999988854
No 81
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=2e-12 Score=151.10 Aligned_cols=209 Identities=16% Similarity=0.185 Sum_probs=141.4
Q ss_pred CCCceeEEEeeCCccCHHH--HHhh-ccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhc
Q psy17257 84 DITHMKSVKLRNAEVSDSG--MQKL-LSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVG 160 (778)
Q Consensus 84 ~~~~L~~L~L~~~~isd~~--l~~L-~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~ 160 (778)
..++|+.|++++|.++..+ ...+ ..++|++|++++| .++... ..+ ..+++|+.|++++|.......... ..
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~-~~l~~L~~L~l~~n~l~~~~~~~~---~~ 421 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANF-MGLEELQHLDFQHSTLKRVTEFSA---FL 421 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCC-TTCTTCCEEECTTSEEESTTTTTT---TT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch-hhc-cCCCCCCeeECCCCccCCccChhh---hh
Confidence 3468999999999876432 1222 3678999999998 454321 122 357899999999997642111000 00
Q ss_pred cccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCC
Q psy17257 161 EKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFD 240 (778)
Q Consensus 161 e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~ 240 (778)
.++..+.+..+ .+. ++......+..+++|++|++++|.+ ++..++..+..+++|+.||+++|.++ +
T Consensus 422 -~l~~L~~L~l~-------~n~----l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 487 (606)
T 3vq2_A 422 -SLEKLLYLDIS-------YTN----TKIDFDGIFLGLTSLNTLKMAGNSF-KDNTLSNVFANTTNLTFLDLSKCQLE-Q 487 (606)
T ss_dssp -TCTTCCEEECT-------TSC----CEECCTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSCCC-E
T ss_pred -ccccCCEEECc-------CCC----CCccchhhhcCCCCCCEEECCCCcC-CCcchHHhhccCCCCCEEECCCCcCC-c
Confidence 11111111111 001 1111112347899999999999998 55334546788999999999999997 2
Q ss_pred cccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCC-CCCEEeec
Q psy17257 241 NKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLP-HLVSLDIS 319 (778)
Q Consensus 241 ~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp-~L~~LDLS 319 (778)
. ....+..+ ++|++|++++|++++..+..+.++++|++||+++|++ + .+ |. .+..+| +|+.|+++
T Consensus 488 ~-~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~---~~---p~-----~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 488 I-SWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-E---TS---KG-----ILQHFPKSLAFFNLT 553 (606)
T ss_dssp E-CTTTTTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC-C---CE---ES-----CGGGSCTTCCEEECC
T ss_pred c-Chhhhccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC-c---cc---CH-----hHhhhcccCcEEEcc
Confidence 1 12347788 7999999999999887788899999999999999997 2 11 22 156776 69999999
Q ss_pred CCCCCCC
Q psy17257 320 GTNLAGR 326 (778)
Q Consensus 320 gn~l~~~ 326 (778)
+|++..+
T Consensus 554 ~N~~~c~ 560 (606)
T 3vq2_A 554 NNSVACI 560 (606)
T ss_dssp SCCCCCS
T ss_pred CCCcccC
Confidence 9998754
No 82
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=136.53 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=114.5
Q ss_pred CceeEEEeeCCccCHHHHHhhc------cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL------SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVV 159 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~------~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l 159 (778)
.+|+.|+|++|.+++.+...+. +++|++|+|++| .+++.++..++..+++|+.|+|++|.+. +.... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~---~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACK---DL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHH---HH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHH---HH
Confidence 4788999999999987766443 258999999998 6888887777666678999999998763 11111 00
Q ss_pred ccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHH---HHHhccCCCCCeEeccCcc
Q psy17257 160 GEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSIC---TQLYRDMPHLTHLNLSKCM 236 (778)
Q Consensus 160 ~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l---~~~~~~lp~L~~LdLS~~~ 236 (778)
. ..+....++|++|++++|.+ ++.+. ...+..+++|++|||++|.
T Consensus 147 ~-------------------------------~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 147 R-------------------------------DLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp H-------------------------------HHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred H-------------------------------HHHHhcCCccceeeCCCCCC-ChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 0 01113568899999999988 66543 3344678899999999998
Q ss_pred ccCCcc--c-chHHHhccccccEEEcCCCCCcch----hhHhhcCCCCccEEeccCCCC
Q psy17257 237 FLFDNK--D-LSFLAEFKDTLVSLVLFNVSIVKD----NLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 237 i~~~~~--~-l~~L~~l~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~~LdLS~~~~ 288 (778)
++ +.+ . ...+... ++|++|+|++|.+++. +...+..+++|++||+++|.+
T Consensus 195 l~-~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 195 LG-DEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CH-HHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CC-cHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 87 321 0 1224455 5788888888888753 234455678888888888886
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.23 E-value=1.8e-11 Score=145.09 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=38.9
Q ss_pred HhhccCCCCceeEEEeeCCccC-----HHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCC
Q psy17257 78 DTFLTKDITHMKSVKLRNAEVS-----DSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCS 147 (778)
Q Consensus 78 ~~f~~~~~~~L~~L~L~~~~is-----d~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~ 147 (778)
..|... ++|+.|++++|.++ +..+..+...+|+.|++++| .++......+ ..+++|+.|++++|..
T Consensus 347 ~~~~~l--~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 347 NMFTGL--INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAF-SWLGHLEVLDLGLNEI 417 (680)
T ss_dssp TTTTTC--TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCC
T ss_pred hHhccc--cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhh-hCCCCCCEEeCCCCcC
Confidence 345433 68888888877532 22222333457888888887 4553222222 3467788888887765
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.23 E-value=5.2e-12 Score=136.33 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=140.5
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP 150 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~ 150 (778)
++.-....|... ++|+.|+|++|.++......+. .++|++|++++| .++. +.. ...++|++|++++|....
T Consensus 66 i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~--l~~--~~~~~L~~L~l~~n~i~~- 137 (332)
T 2ft3_A 66 ISELRKDDFKGL--QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVE--IPP--NLPSSLVELRIHDNRIRK- 137 (332)
T ss_dssp CCEECTTTTTTC--TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCS--CCS--SCCTTCCEEECCSSCCCC-
T ss_pred CCccCHhHhhCC--CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCc--cCc--cccccCCEEECCCCccCc-
Confidence 454434456543 6899999999998865555554 689999999998 5652 110 123789999999997642
Q ss_pred cccchhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeE
Q psy17257 151 DCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHL 230 (778)
Q Consensus 151 ~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~L 230 (778)
.+.. ..+ ..+..+.+..+. +.... .......+ ..+ +|+.|++++|.+ +. ++. .-.++|+.|
T Consensus 138 --~~~~-~~~-~l~~L~~L~l~~-------n~l~~-~~~~~~~~-~~l-~L~~L~l~~n~l-~~--l~~--~~~~~L~~L 198 (332)
T 2ft3_A 138 --VPKG-VFS-GLRNMNCIEMGG-------NPLEN-SGFEPGAF-DGL-KLNYLRISEAKL-TG--IPK--DLPETLNEL 198 (332)
T ss_dssp --CCSG-GGS-SCSSCCEEECCS-------CCCBG-GGSCTTSS-CSC-CCSCCBCCSSBC-SS--CCS--SSCSSCSCC
T ss_pred --cCHh-HhC-CCccCCEEECCC-------Ccccc-CCCCcccc-cCC-ccCEEECcCCCC-Cc--cCc--cccCCCCEE
Confidence 1100 000 011111111000 00000 00000112 334 777777777776 33 111 113678888
Q ss_pred eccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC
Q psy17257 231 NLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310 (778)
Q Consensus 231 dLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l 310 (778)
++++|.++ +. ....+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+ + .+ |. .+..+
T Consensus 199 ~l~~n~i~-~~-~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~---~l---p~-----~l~~l 263 (332)
T 2ft3_A 199 HLDHNKIQ-AI-ELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-S---RV---PA-----GLPDL 263 (332)
T ss_dssp BCCSSCCC-CC-CTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC-C---BC---CT-----TGGGC
T ss_pred ECCCCcCC-cc-CHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC-e---ec---Ch-----hhhcC
Confidence 88888876 21 12346677 6888888888888765555677888888888888877 2 11 21 25778
Q ss_pred CCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 311 PHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 311 p~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
++|+.||+++|.+.+-+.... . .. .+. ...+.|+.|.+.+++..
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~--~----------~~-~~~-~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDF--C----------PV-GFG-VKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSS--S----------CS-SCC-SSSCCBSEEECCSSSSC
T ss_pred ccCCEEECCCCCCCccChhHc--c----------cc-ccc-cccccccceEeecCccc
Confidence 889999999988764322111 0 00 011 12467888888888754
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.23 E-value=4.7e-11 Score=138.46 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=86.5
Q ss_pred hcCCCccEEEecCCcccCh-hHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQ-SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~-~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
..+++|+.|++++|.+ ++ ..++..+..+++|+.||+++|.++ +......+..+ ++|+.|++++|++++..+..+.
T Consensus 374 ~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 374 STLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNSLN-SHAYDRTCAWA-ESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp CSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSCCB-SCCSSCCCCCC-TTCCEEECCSSCCCGGGGSSCC-
T ss_pred cccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCcCC-CccChhhhcCc-ccCCEEECCCCCCCcchhhhhc-
Confidence 6777888888888877 43 234445677888888888888776 21111124455 6788888888877654443332
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccc-ccccc
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPG-LASRV 353 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~-l~~~~ 353 (778)
++|++||+++|.+ + .+ |. .+..+++|+.||+++|.+.+ + |. .. ..
T Consensus 450 -~~L~~L~L~~N~l-~---~i---p~-----~~~~l~~L~~L~L~~N~l~~--l------------------~~~~~-~~ 495 (562)
T 3a79_B 450 -PKVKVLDLHNNRI-M---SI---PK-----DVTHLQALQELNVASNQLKS--V------------------PDGVF-DR 495 (562)
T ss_dssp -TTCSEEECCSSCC-C---CC---CT-----TTTSSCCCSEEECCSSCCCC--C------------------CTTST-TT
T ss_pred -CcCCEEECCCCcC-c---cc---Ch-----hhcCCCCCCEEECCCCCCCC--C------------------CHHHH-hc
Confidence 6788888888876 2 11 21 13477888888888887652 1 12 12 25
Q ss_pred CccceEeeccccCCC
Q psy17257 354 DRPLEFLGLYGTKHG 368 (778)
Q Consensus 354 ~~~L~~L~L~~t~~~ 368 (778)
.++|+.|.|.+++..
T Consensus 496 l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 496 LTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTCCCEECCSCCBC
T ss_pred CCCCCEEEecCCCcC
Confidence 677888888888754
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=8.2e-11 Score=133.03 Aligned_cols=183 Identities=14% Similarity=0.075 Sum_probs=132.5
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
++|+.|+|++|.+++.. +. .++|++|++++| .+++.. + ..+++|++|++++|....- ... ..+
T Consensus 64 ~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---~-~~l~~L~~L~L~~N~l~~l-~~~-------~l~ 127 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---V-TPLTKLTYLNCDTNKLTKL-DVS-------QNP 127 (457)
T ss_dssp TTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---C-TTCTTCCEEECCSSCCSCC-CCT-------TCT
T ss_pred CCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee---c-CCCCcCCEEECCCCcCCee-cCC-------CCC
Confidence 68999999999987642 33 578999999998 576532 3 4578999999999976521 111 111
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
..+.+... .+...+ + . ++.+++|+.|++++|..++.. .+..+++|+.||+++|.++ .+
T Consensus 128 ~L~~L~l~-------~N~l~~-l-----~-l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~----~l 185 (457)
T 3bz5_A 128 LLTYLNCA-------RNTLTE-I-----D-VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKIT----EL 185 (457)
T ss_dssp TCCEEECT-------TSCCSC-C-----C-CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCC----CC
T ss_pred cCCEEECC-------CCccce-e-----c-cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccc----ee
Confidence 11111111 111111 1 2 278899999999999653432 3567999999999999998 55
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+ +..+ ++|+.|.+++|.+++. .+..+++|++||+++|++ + + + | +..+++|+.|++++|.+.
T Consensus 186 ~-l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~--~-i---p-------~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 186 D-VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-T--E-I---D-------VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp C-CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-S--C-C---C-------CTTCTTCSEEECCSSCCS
T ss_pred c-cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-c--c-c---C-------ccccCCCCEEEeeCCcCC
Confidence 4 6677 7999999999998763 378899999999999998 2 1 2 2 467999999999999987
Q ss_pred C
Q psy17257 325 G 325 (778)
Q Consensus 325 ~ 325 (778)
+
T Consensus 247 ~ 247 (457)
T 3bz5_A 247 E 247 (457)
T ss_dssp C
T ss_pred C
Confidence 5
No 87
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=136.28 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=129.4
Q ss_pred cCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHh----cCCCCceeecCCCCCCCccccchhhhhccccccccccccch
Q psy17257 98 VSDSGMQKLLSHHVQELELIKCANVSQASLEVLNM----SSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDF 173 (778)
Q Consensus 98 isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~----~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~ 173 (778)
+.+..+..-..++|++|++++| .+++.....++. .+++|+.|+|++|.+. +....
T Consensus 61 ~~~~~l~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~------------------- 119 (372)
T 3un9_A 61 FQNQRFSAEVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLR------------------- 119 (372)
T ss_dssp HHTHHHHHHHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-HHHHH-------------------
T ss_pred hcCHHHHHHHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-HHHHH-------------------
Confidence 3344443323568999999999 699877765553 3469999999999763 11111
Q ss_pred hhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHh----ccCCCCCeEeccCccccCCcccch----
Q psy17257 174 EININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLY----RDMPHLTHLNLSKCMFLFDNKDLS---- 245 (778)
Q Consensus 174 ~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~----~~lp~L~~LdLS~~~i~~~~~~l~---- 245 (778)
.+...+++|+.|++++|.+ ++.+...+. ...++|++|+|++|.++ +. ...
T Consensus 120 -------------------~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~-~~-~~~~l~~ 177 (372)
T 3un9_A 120 -------------------TLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLT-AA-GVAVLME 177 (372)
T ss_dssp -------------------HTHHHHHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCCEEECCSSCCH-HH-HHHHHHH
T ss_pred -------------------HHHHHHHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccceeeCCCCCCC-hH-HHHHHHH
Confidence 1224456899999999999 776655443 35789999999999997 32 122
Q ss_pred HHHhccccccEEEcCCCCCcchh----hHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDN----LDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~----~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
.+..+ ++|++|+|++|.+++.. ...+..+++|++||+++|.+ ++.| ...+...+..+++|+.||+++|
T Consensus 178 ~L~~~-~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g------~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 178 GLAGN-TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTA------ALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHTC-SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-CHHH------HHHHHHHHHHCSSCCEEECTTS
T ss_pred HHhcC-CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-CHHH------HHHHHHHHHhCCCCCEEeccCC
Confidence 24556 78999999999997643 45567889999999999987 3222 1345445678899999999999
Q ss_pred CCCCCcc
Q psy17257 322 NLAGRGV 328 (778)
Q Consensus 322 ~l~~~~~ 328 (778)
.+.+.++
T Consensus 250 ~i~~~g~ 256 (372)
T 3un9_A 250 ELSSEGR 256 (372)
T ss_dssp SCCHHHH
T ss_pred CCCHHHH
Confidence 9876554
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.22 E-value=4.3e-12 Score=130.34 Aligned_cols=177 Identities=8% Similarity=0.070 Sum_probs=126.2
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCC-CCCCCccccchhhhhcccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGP-HCSMFPDCLESEVVVGEKQ 163 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~-c~~~~~~~~~~~~~l~e~~ 163 (778)
.+|+.|+|+++.++......+. .++|++|++++|..++.-....+ ..+++|++|++++ +... .++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~---~i~--------- 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLT---YID--------- 97 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCC---EEC---------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCee---EcC---------
Confidence 3799999999988754444453 67899999999843543211122 4578999999998 5543 111
Q ss_pred ccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCC---eEeccCc-cccC
Q psy17257 164 RADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLT---HLNLSKC-MFLF 239 (778)
Q Consensus 164 p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~---~LdLS~~-~i~~ 239 (778)
...+..+++|+.|++++|.+ +. ++. +..+++|+ .|++++| .++
T Consensus 98 ----------------------------~~~f~~l~~L~~L~l~~n~l-~~--lp~-~~~l~~L~~L~~L~l~~N~~l~- 144 (239)
T 2xwt_C 98 ----------------------------PDALKELPLLKFLGIFNTGL-KM--FPD-LTKVYSTDIFFILEITDNPYMT- 144 (239)
T ss_dssp ----------------------------TTSEECCTTCCEEEEEEECC-CS--CCC-CTTCCBCCSEEEEEEESCTTCC-
T ss_pred ----------------------------HHHhCCCCCCCEEeCCCCCC-cc--ccc-cccccccccccEEECCCCcchh-
Confidence 01126789999999999988 44 332 66788888 9999999 877
Q ss_pred Ccccch--HHHhcccccc-EEEcCCCCCcchhhHhhcCCCCccEEeccCCC-CCCCCCCCCCCchhhHHHHHhcC-CCCC
Q psy17257 240 DNKDLS--FLAEFKDTLV-SLVLFNVSIVKDNLDHICSLPLLRRLDISVSS-DYPDYGNYSPNPNDMLSYIIFKL-PHLV 314 (778)
Q Consensus 240 ~~~~l~--~L~~l~~~L~-~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~-~~~~~g~~~~~p~~~L~~~~~~l-p~L~ 314 (778)
.++ .+..+ ++|+ .|++++|++. .++...+..++|++|++++|+ + +. + + + ..+..+ ++|+
T Consensus 145 ---~i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l-~~---i-~-~-----~~~~~l~~~L~ 208 (239)
T 2xwt_C 145 ---SIPVNAFQGL-CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL-TV---I-D-K-----DAFGGVYSGPS 208 (239)
T ss_dssp ---EECTTTTTTT-BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTC-CE---E-C-T-----TTTTTCSBCCS
T ss_pred ---hcCcccccch-hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCc-cc---C-C-H-----HHhhccccCCc
Confidence 443 36777 7999 9999999987 344444445899999999995 5 21 1 0 1 125678 9999
Q ss_pred EEeecCCCCC
Q psy17257 315 SLDISGTNLA 324 (778)
Q Consensus 315 ~LDLSgn~l~ 324 (778)
.||+++|++.
T Consensus 209 ~L~l~~N~l~ 218 (239)
T 2xwt_C 209 LLDVSQTSVT 218 (239)
T ss_dssp EEECTTCCCC
T ss_pred EEECCCCccc
Confidence 9999999875
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=1.7e-11 Score=145.27 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=146.4
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCC--ccccchhhhhccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMF--PDCLESEVVVGEK 162 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~--~~~~~~~~~l~e~ 162 (778)
.+|+.|++++|.++......+. .++|++|++++| .+++.........+++|+.|++++|.... +.... .
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------~ 452 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-------L 452 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-------T
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhh-------c
Confidence 5899999999998765444554 678999999998 46432111122457899999999998641 11110 1
Q ss_pred cccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcc
Q psy17257 163 QRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNK 242 (778)
Q Consensus 163 ~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~ 242 (778)
+|..+.+....+- ....+.+ +..+..+++|+.|++++|.+ +... +..+..+++|+.||+++|.++
T Consensus 453 ~~~L~~L~l~~n~-----l~~~~~~----p~~~~~l~~L~~L~Ls~N~l-~~i~-~~~~~~l~~L~~L~Ls~N~l~---- 517 (680)
T 1ziw_A 453 VPSLQRLMLRRVA-----LKNVDSS----PSPFQPLRNLTILDLSNNNI-ANIN-DDMLEGLEKLEILDLQHNNLA---- 517 (680)
T ss_dssp CTTCCEEECTTSC-----CBCTTCS----SCTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCG----
T ss_pred Ccccccchhcccc-----ccccccC----CcccccCCCCCEEECCCCCC-CcCC-hhhhccccccCEEeCCCCCcc----
Confidence 1111111110000 0000111 12237888999999999988 5422 235678899999999999886
Q ss_pred cc----------hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCC
Q psy17257 243 DL----------SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH 312 (778)
Q Consensus 243 ~l----------~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~ 312 (778)
.+ ..+..+ ++|+.|++++|++..-....+.++++|++||+++|++ +. + |. ..+..+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~---l---~~----~~~~~l~~ 585 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGL-SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NT---L---PA----SVFNNQVS 585 (680)
T ss_dssp GGGSTTSTTSCCCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CC---C---CT----TTTTTCTT
T ss_pred ccchhhccCCcchhhcCC-CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC-Cc---C---CH----hHhCCCCC
Confidence 22 125667 7899999999988743334578899999999999987 21 1 11 12567899
Q ss_pred CCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 313 LVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 313 L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
|+.||+++|.+.+- .+. .+. ...++|+.|.|.+|+..
T Consensus 586 L~~L~L~~N~l~~~--~~~----------------~~~-~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 586 LKSLNLQKNLITSV--EKK----------------VFG-PAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCEEECTTSCCCBC--CHH----------------HHH-HHHTTCSEEECTTCCCC
T ss_pred CCEEECCCCcCCcc--Chh----------------Hhc-ccccccCEEEccCCCcc
Confidence 99999999987532 110 121 14578999999999865
No 90
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=9.8e-12 Score=146.52 Aligned_cols=205 Identities=11% Similarity=0.089 Sum_probs=124.1
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHH-HHHHh-----cCCCCceeecCCCCCCCccccchhhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASL-EVLNM-----SSDQLYSLSLGPHCSMFPDCLESEVV 158 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l-~~L~~-----~~~~L~~L~Ls~c~~~~~~~~~~~~~ 158 (778)
++|+.|+|++|.+.......+. .++|++|++++|..+++..+ ..++. .+++|+.|++++|.+. .++....
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~ip~~~~ 325 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---TFPVETS 325 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---SCCCHHH
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---ccCchhh
Confidence 5899999999886654444444 67899999999843776233 33432 3478999999998764 1221000
Q ss_pred hccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCC-CCeEeccCccc
Q psy17257 159 VGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPH-LTHLNLSKCMF 237 (778)
Q Consensus 159 l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~-L~~LdLS~~~i 237 (778)
++ ..+..+.+.. +.+...|.++ .+ ..+++|+.|++++|.+ + .++..+..+++ |+.|++++|.+
T Consensus 326 l~-~l~~L~~L~L-------~~N~l~g~ip----~~-~~l~~L~~L~L~~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 326 LQ-KMKKLGMLEC-------LYNQLEGKLP----AF-GSEIKLASLNLAYNQI-T--EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp HT-TCTTCCEEEC-------CSCCCEEECC----CC-EEEEEESEEECCSSEE-E--ECCTTSEEECTTCCEEECCSSCC
T ss_pred hc-cCCCCCEEeC-------cCCcCccchh----hh-CCCCCCCEEECCCCcc-c--cccHhhhhhcccCcEEEccCCcC
Confidence 00 0111111111 1111222221 22 6677888888888877 4 23335667777 88888888887
Q ss_pred cCCcccchH-HHhc-cccccEEEcCCCCCcchhhHhhc-------CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHh
Q psy17257 238 LFDNKDLSF-LAEF-KDTLVSLVLFNVSIVKDNLDHIC-------SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIF 308 (778)
Q Consensus 238 ~~~~~~l~~-L~~l-~~~L~~L~L~~~~~~~~~~~~l~-------~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~ 308 (778)
+ .++. +... .++|+.|++++|.+.+..+..+. .+++|++|++++|.+ + .+ |. ..+.
T Consensus 390 ~----~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~---~l---p~----~~~~ 454 (636)
T 4eco_A 390 K----YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S---KF---PK----ELFS 454 (636)
T ss_dssp S----SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C---SC---CT----HHHH
T ss_pred c----ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-C---cC---CH----HHHc
Confidence 6 3432 2222 03688888888887766555565 677888888888876 2 11 21 1345
Q ss_pred cCCCCCEEeecCCCCC
Q psy17257 309 KLPHLVSLDISGTNLA 324 (778)
Q Consensus 309 ~lp~L~~LDLSgn~l~ 324 (778)
.+++|+.|++++|.+.
T Consensus 455 ~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 455 TGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTCCCSEEECCSSCCS
T ss_pred cCCCCCEEECCCCCCC
Confidence 6888888888888876
No 91
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=3.7e-12 Score=133.21 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=54.7
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ ++ ++.. .. ++|+.|++++|.++ .++.+..+ ++|+.|++++|++++- ..+..+
T Consensus 82 ~~l~~L~~L~L~~N~l-~~--l~~~-~~-~~L~~L~L~~N~l~----~~~~l~~l-~~L~~L~Ls~N~i~~~--~~l~~l 149 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRL-KN--LNGI-PS-ACLSRLFLDNNELR----DTDSLIHL-KNLEILSIRNNKLKSI--VMLGFL 149 (263)
T ss_dssp TTCSSCCEEECCSSCC-SC--CTTC-CC-SSCCEEECCSSCCS----BSGGGTTC-TTCCEEECTTSCCCBC--GGGGGC
T ss_pred ccCCCCCEEECCCCcc-CC--cCcc-cc-CcccEEEccCCccC----CChhhcCc-ccccEEECCCCcCCCC--hHHccC
Confidence 4455566666666555 32 1111 11 55666666666555 44445555 4566666666655432 245555
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
++|++|++++|.+ ++. + .+..+++|+.||+++|.+...
T Consensus 150 ~~L~~L~L~~N~i-~~~------~------~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 150 SKLEVLDLHGNEI-TNT------G------GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCEEECTTSCC-CBC------T------TSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCEEECCCCcC-cch------H------HhccCCCCCEEeCCCCcccCC
Confidence 6666666666655 110 0 144556666666666655443
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=2.4e-11 Score=147.10 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=137.5
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHH-HHHH------hcCCCCceeecCCCCCCCccccchhh
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASL-EVLN------MSSDQLYSLSLGPHCSMFPDCLESEV 157 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l-~~L~------~~~~~L~~L~Ls~c~~~~~~~~~~~~ 157 (778)
++|+.|+|++|.+.......+. .++|+.|+|++|..+++..+ ..++ ..+++|+.|+|++|.+. .++...
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---EFPASA 567 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---BCCCHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---ccCChh
Confidence 6899999999986654445554 68999999999843876233 2332 24569999999999875 222100
Q ss_pred hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCC-CCeEeccCcc
Q psy17257 158 VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPH-LTHLNLSKCM 236 (778)
Q Consensus 158 ~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~-L~~LdLS~~~ 236 (778)
.++ ..+..+.+... .+... .+ +.+ ..+++|+.|++++|.+ + .++..+..+++ |+.|++++|.
T Consensus 568 ~l~-~L~~L~~L~Ls-------~N~l~-~l----p~~-~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 568 SLQ-KMVKLGLLDCV-------HNKVR-HL----EAF-GTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp HHT-TCTTCCEEECT-------TSCCC-BC----CCC-CTTSEESEEECCSSCC-S--CCCTTSCEECTTCCEEECCSSC
T ss_pred hhh-cCCCCCEEECC-------CCCcc-cc----hhh-cCCCcceEEECcCCcc-c--cchHHHhhccccCCEEECcCCC
Confidence 000 01111111110 01111 11 122 6778888888888877 4 23334666777 8888888887
Q ss_pred ccCCcccchH-HHhcc-ccccEEEcCCCCCcchhhH---hhc--CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhc
Q psy17257 237 FLFDNKDLSF-LAEFK-DTLVSLVLFNVSIVKDNLD---HIC--SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK 309 (778)
Q Consensus 237 i~~~~~~l~~-L~~l~-~~L~~L~L~~~~~~~~~~~---~l~--~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~ 309 (778)
++ .++. +.... ++|+.|++++|.+.+..+. .+. .+++|++|++++|.+ + .+ |. ..+..
T Consensus 631 L~----~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~---~l---p~----~~~~~ 695 (876)
T 4ecn_A 631 LK----YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-Q---KF---PT----ELFAT 695 (876)
T ss_dssp CC----SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-C---SC---CH----HHHHT
T ss_pred CC----cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-C---cc---CH----HHHcc
Confidence 76 3432 22221 2488888888877653221 122 445788888888876 2 11 22 23457
Q ss_pred CCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 310 LPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 310 lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
+++|+.|++++|.+.. +...... ..+... ...++|+.|.|.+|.+.
T Consensus 696 l~~L~~L~Ls~N~L~~--ip~~~~~----------~~~~~l-~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 696 GSPISTIILSNNLMTS--IPENSLK----------PKDGNY-KNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TCCCSEEECCSCCCSC--CCTTSSS----------CTTSCC-TTGGGCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCCc--cChHHhc----------cccccc-cccCCccEEECCCCCCc
Confidence 8899999999998752 2111000 000011 13358999999999865
No 93
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.20 E-value=8.1e-10 Score=127.19 Aligned_cols=211 Identities=18% Similarity=0.260 Sum_probs=162.5
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++.-|+..++.++.. +.+....+.+.|.+..+++++... ...+..-+..+++|+...++.....+++.|++.
T Consensus 265 ~~v~~~a~~aL~~l~~~-~~~~~~~v~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 265 PEVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGAT-----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HHHHHHHHHHHHHHHSS-CHHHHHHHHTTTCHHHHHHHHTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHhhhh-hhhhHHHHHhccchHHHHHHhcCC-----ChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 45555666666555543 445555666778888888876532 134556788899999988899999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+.+.|.. .+++++....+.|+|++.- .+.+..++....+..+..+|.+ ...+|...||++|+++++.|.
T Consensus 339 ~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~----- 409 (529)
T 3tpo_A 339 VFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGT----- 409 (529)
T ss_dssp GHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSC-----
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCC-----
Confidence 99999984 4788999999999999874 5566677788899999999998 478999999999999998642
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc-----cCCccccchhhhhch
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK-----VYPEKYCQVVEAEGG 765 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~-----~~~~~y~~~~~~e~g 765 (778)
...+ ..|++ .--..|++.||.. .-+.++.-|+|||.++.. ...++|+.|+++.||
T Consensus 410 -~~~~----~~l~~--------------~g~i~~L~~LL~~-~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 469 (529)
T 3tpo_A 410 -VEQI----VYLVH--------------CGIIEPLMNLLSA-KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 469 (529)
T ss_dssp -HHHH----HHHHH--------------TTCHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred -HHHH----HHHHH--------------CcCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCc
Confidence 1111 22221 2335789999985 568888899999999875 234689999999999
Q ss_pred HHHHHHHhhccC
Q psy17257 766 IELLQNLLDNEN 777 (778)
Q Consensus 766 ~~~l~~~~~~~~ 777 (778)
++.|++|..|++
T Consensus 470 l~~ie~Lq~~~n 481 (529)
T 3tpo_A 470 LDKIEALQRHEN 481 (529)
T ss_dssp HHHHTGGGGCSS
T ss_pred HHHHHHHHcCCC
Confidence 999999999875
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=143.05 Aligned_cols=207 Identities=12% Similarity=0.075 Sum_probs=139.1
Q ss_pred CCceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhH--HHHHHhcCCCCceeecCCCCCCCc-cccchhhhhcc
Q psy17257 85 ITHMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQAS--LEVLNMSSDQLYSLSLGPHCSMFP-DCLESEVVVGE 161 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~--l~~L~~~~~~L~~L~Ls~c~~~~~-~~~~~~~~l~e 161 (778)
..+|+.++++++.+...... ...++|++|++++| .++... ...+ ..+++|+.|++++|..... ....
T Consensus 324 l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~------- 393 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFL------- 393 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSS-CCBEEEEEEHHH-HTCSCCCEEECCSCSEEEEEEEEE-------
T ss_pred ccccCEEeCcCCcccccccc-ccCCCCCEEeCcCC-ccCccccccccc-cccCccCEEECCCCcccccccccc-------
Confidence 46899999999885532111 23678999999998 566432 1233 3578999999999976421 1110
Q ss_pred ccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCc
Q psy17257 162 KQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDN 241 (778)
Q Consensus 162 ~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~ 241 (778)
.++..+.+.... +...+... ...+..+++|+.|++++|.+ ++. .+..+..+++|+.|++++|.++ +.
T Consensus 394 ~l~~L~~L~l~~-------n~l~~~~~---~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~-~~ 460 (570)
T 2z63_A 394 GLEQLEHLDFQH-------SNLKQMSE---FSVFLSLRNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNSFQ-EN 460 (570)
T ss_dssp TCTTCCEEECTT-------SEEESCTT---SCTTTTCTTCCEEECTTSCC-EEC-CTTTTTTCTTCCEEECTTCEEG-GG
T ss_pred ccCCCCEEEccC-------Cccccccc---hhhhhcCCCCCEEeCcCCcc-ccc-chhhhhcCCcCcEEECcCCcCc-cc
Confidence 111111111100 00001000 01237899999999999988 443 2336778999999999999986 22
Q ss_pred ccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 242 KDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 242 ~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
.....+..+ ++|+.|++++|++++..+..+..+++|++|++++|.+ ++ . .|. .+..+++|+.||+++|
T Consensus 461 ~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~--~---~~~-----~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 461 FLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KS--V---PDG-----IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SC--C---CTT-----TTTTCTTCCEEECCSS
T ss_pred cchhhhhcc-cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC-CC--C---CHH-----HhhcccCCcEEEecCC
Confidence 112346677 7999999999999877677889999999999999987 21 1 111 3678999999999999
Q ss_pred CCCCC
Q psy17257 322 NLAGR 326 (778)
Q Consensus 322 ~l~~~ 326 (778)
.+.++
T Consensus 529 ~~~~~ 533 (570)
T 2z63_A 529 PWDCS 533 (570)
T ss_dssp CBCCC
T ss_pred cccCC
Confidence 98754
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.19 E-value=7.9e-11 Score=136.53 Aligned_cols=70 Identities=9% Similarity=0.146 Sum_probs=48.3
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~ 148 (778)
++......|... ++|+.|+|++|.++......+. .++|++|++++| .++. ++.. .+++|++|++++|...
T Consensus 64 i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 64 ISELRMPDISFL--SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQN--ISCC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp CCCCCGGGTTTC--TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCE--ECSC--CCTTCSEEECCSSCCS
T ss_pred ccccChhhhccC--CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCc--cCcc--ccccCCEEECCCCCcc
Confidence 554444556543 6899999999988765444454 578999999988 4652 2111 5788999999988764
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=2.3e-11 Score=125.90 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=119.1
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++......+. .++|++|+|++| .++......+ ..+++|+.|+|++|.+.. .+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~---~~---------- 99 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANNQLAS---LP---------- 99 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTSCCCC---CC----------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCCcccc---cC----------
Confidence 4799999999998765444454 689999999998 5764222222 457899999999998741 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
...+..+++|+.|++++|.+ +.-. ...+..+++|+.|++++|.++ .+
T Consensus 100 ---------------------------~~~~~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~----~~ 146 (251)
T 3m19_A 100 ---------------------------LGVFDHLTQLDKLYLGGNQL-KSLP-SGVFDRLTKLKELRLNTNQLQ----SI 146 (251)
T ss_dssp ---------------------------TTTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CC
T ss_pred ---------------------------hhHhcccCCCCEEEcCCCcC-CCcC-hhHhccCCcccEEECcCCcCC----cc
Confidence 01226789999999999998 5422 235678999999999999998 44
Q ss_pred h--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 245 S--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 245 ~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
+ .+..+ ++|++|+|++|++.......+..+++|++|++++|++
T Consensus 147 ~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 147 PAGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 3 47777 7999999999999865556788999999999999998
No 97
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.18 E-value=5.5e-11 Score=136.77 Aligned_cols=308 Identities=15% Similarity=0.168 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCc-
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQ- 502 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~- 502 (778)
.++..++..++. .+..++..+..+|.+|+...... -..-....++..|+..+.. .+..++++++.+|.+..--.
T Consensus 173 g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 173 DAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDY-RDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp TCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccc-hHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCC
Confidence 455666677764 35678999999999998653100 0011123456777777765 45678888877766543221
Q ss_pred --cccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccc
Q psy17257 503 --DVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCD 580 (778)
Q Consensus 503 --~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d 580 (778)
....-...+...+++.+. +. | +.++..|+..++.++.. +++....+.+.+.+..++++++.. ..
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~-~~-d------~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~Lv~lL~~~-----~~ 313 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIY-SM-D------TETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHE-----ST 313 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTT-CC-C------HHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCS-----CH
T ss_pred CCCcHHHHHhHHHHHHHHHc-CC-C------HHHHHHHHHHHHHHhCC-CHHHHHHHHhcCcHHHHHHHHCCC-----Ch
Confidence 111112233334444443 22 4 77888888888888765 455555666678888888887531 24
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANL 659 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~l 659 (778)
.+.+-++.+++|++..++...+.+++.++++.+++.|..- +++++...+..|+|++.. .+....++....+..+.++
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 4557788899999998899999999999999999999853 788999999999999974 3444556777889999999
Q ss_pred hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhH
Q psy17257 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739 (778)
Q Consensus 660 l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~ 739 (778)
|.+ .+.+|...|+.+|++++..|.. + + +..+.++. ..-..|++.+|.. ..|.++.
T Consensus 392 L~~--~~~~v~~~a~~aL~~l~~~~~~-~----~---~~~~~l~~--------------~~~l~~L~~ll~~-~~~~v~~ 446 (530)
T 1wa5_B 392 LEV--AEYKTKKEACWAISNASSGGLQ-R----P---DIIRYLVS--------------QGCIKPLCDLLEI-ADNRIIE 446 (530)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHTTT-C----T---HHHHHHHH--------------TTCHHHHHHHTTT-CCHHHHH
T ss_pred Hhc--CCHHHHHHHHHHHHHHHhcCCC-c----H---HHHHHHHH--------------CCCHHHHHHHHhC-CCHHHHH
Confidence 987 4679999999999999986531 1 0 11122221 2345788888885 5789999
Q ss_pred HHHHHHHHhcccCC----------ccccchhhhhchHHHHHHHhhccC
Q psy17257 740 WSVWALANLTKVYP----------EKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 740 wa~wa~~~~~~~~~----------~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
+|+||+.+++...+ ..||.++.+.||++.|..|..|++
T Consensus 447 ~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~ 494 (530)
T 1wa5_B 447 VTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence 99999999998544 469999999999999999998875
No 98
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.18 E-value=1.8e-10 Score=131.81 Aligned_cols=325 Identities=16% Similarity=0.156 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
+++..++..++... ...++.++..+|.+|+..... -..-....++..|+..+... +..+++++..+|.+..--..
T Consensus 185 ~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 185 GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp THHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTH--HHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCccc--HHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCCh
Confidence 34556666666543 345666788888888754221 01111234566666666443 56678887766655321111
Q ss_pred ccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhH
Q psy17257 504 VQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDIL 583 (778)
Q Consensus 504 ~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l 583 (778)
.......+...+++.+.. . | +.++..|..+++.++.. +++....+.+.|.++.++++++..-+. ..+.
T Consensus 260 ~~~~~~~~i~~L~~ll~~-~-~------~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~---~~v~ 327 (529)
T 1jdh_A 260 KQEGMEGLLGTLVQLLGS-D-D------INVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR---EDIT 327 (529)
T ss_dssp TCSCCHHHHHHHHHHTTC-S-C------HHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC---HHHH
T ss_pred hhHHHHhHHHHHHHHHcC-C-C------HHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHccCCH---HHHH
Confidence 111123445555555532 2 4 77889999999888664 566777777888999999998765322 3556
Q ss_pred HHHHHHHHhcccccHH---HHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhh
Q psy17257 584 EVAWSAMWNVTDETAI---NCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLV 660 (778)
Q Consensus 584 ~~~~s~lwn~tde~p~---~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll 660 (778)
+-+..+|+|++...|+ ....+++.+|++.+++.|..- .+++++..+++.++|++.-.+-+..+.+...+..+.++|
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc-cchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHH
Confidence 7788999999876554 477899999999999999853 346899999999999998887777888889999999999
Q ss_pred ccCCCCchhhHHHHHHHHH--HhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhh
Q psy17257 661 SSKSDGIEVSYNAAGVLSH--IASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQ 738 (778)
Q Consensus 661 ~~~~~~~evsy~a~gilah--l~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q 738 (778)
++ ..-+|.-.|+..+++ +.+ |. . .+.-+..+...++. +..|+.....++.+.-..|+..++.. ..+.++
T Consensus 407 ~~--~~~~v~~~a~~~l~n~~~~~-~~--~--~~~i~~~~~~al~~-L~~~~~~~~~l~~~~~v~~l~~ll~~-~~~~v~ 477 (529)
T 1jdh_A 407 VR--AHQDTQRRTSMGGTQQQFVE-GV--R--MEEIVEGCTGALHI-LARDVHNRIVIRGLNTIPLFVQLLYS-PIENIQ 477 (529)
T ss_dssp HH--HHHHHC-----------CBT-TB--C--HHHHHHHHHHHHHH-HTTSHHHHHHHHHTTCHHHHHHGGGC-SCHHHH
T ss_pred HH--HhHHHHHHHhcccCchhhhc-cc--c--HHHHHHHHHHHHHH-HhcCchHHHHHhccCCccHHHHHHcC-CchHHH
Confidence 87 356777778888887 333 21 0 11122233333322 23354333445677778899999985 568999
Q ss_pred HHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 739 HWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 739 ~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
..|.||+.+++.. ..|+.++.+.||++.|.++..|++
T Consensus 478 ~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~~~~~ 514 (529)
T 1jdh_A 478 RVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRN 514 (529)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHhcCCC
Confidence 9999999999863 679999999999999999998875
No 99
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.17 E-value=5e-10 Score=125.13 Aligned_cols=307 Identities=17% Similarity=0.234 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCc-
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQ- 502 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~- 502 (778)
.++..+++.++. .+..++..+..+|.+|+...... -..-....++..|+..+.. ..+..+++++..+|.+..--.
T Consensus 107 ~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 107 GAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMC-RDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp THHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHH-HHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCC
Confidence 456666666654 35678999999999998753100 0001112456677777763 235678888776665543211
Q ss_pred -ccccc-HHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccc
Q psy17257 503 -DVQFD-YDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCD 580 (778)
Q Consensus 503 -~~~f~-~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d 580 (778)
...+. ...+...+++.+.. .| +.++..|+..+..++.. .++....+.+.+.+..++++++.. ..
T Consensus 183 ~~~~~~~~~~~l~~L~~~l~~--~~------~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~-----~~ 248 (450)
T 2jdq_A 183 PPPEFAKVSPCLNVLSWLLFV--SD------TDVLADACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHN-----DY 248 (450)
T ss_dssp SCCCGGGTGGGHHHHHHHTTC--CC------HHHHHHHHHHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTCS-----CH
T ss_pred CCCCHHHHHHHHHHHHHHHcc--CC------HHHHHHHHHHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCCC-----ch
Confidence 11111 13334444444432 24 77888888888887764 345555666778888888887521 24
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhh-hhhhhhcccchhHHHHHHHh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAE-VKSLRPKLMTSKFIEVFANL 659 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niae-v~~l~~~l~~~~~i~~~~~l 659 (778)
.+.+-+..+++|++...+..++.+++.|+++.+++.|.. .++.++...++.|+|++. ..+.+..++....+..+.++
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 556778889999999999999999999999999999985 478899999999999996 34455567778899999999
Q ss_pred hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhH
Q psy17257 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739 (778)
Q Consensus 660 l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~ 739 (778)
|.+ ..-+|...||++|++++..+. + +..+.+.+ ..-..+++.+|+. ..+.++.
T Consensus 327 l~~--~~~~v~~~a~~~L~~l~~~~~-------~---~~~~~l~~--------------~~~i~~L~~ll~~-~~~~v~~ 379 (450)
T 2jdq_A 327 LQT--AEFRTRKEAAWAITNATSGGS-------A---EQIKYLVE--------------LGCIKPLCDLLTV-MDSKIVQ 379 (450)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHCC-------H---HHHHHHHH--------------HTCHHHHHHGGGS-SCHHHHH
T ss_pred Hhc--CCHHHHHHHHHHHHHHHcCCC-------H---HHHHHHHH--------------CCCHHHHHHHhcC-CCHHHHH
Confidence 988 467899999999999998541 1 11122221 2334788888885 4689999
Q ss_pred HHHHHHHHhcccCC----------ccccchhhhhchHHHHHHHhhccC
Q psy17257 740 WSVWALANLTKVYP----------EKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 740 wa~wa~~~~~~~~~----------~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.|+||+.+++...+ ++||.++.+.||++.|..+.+||+
T Consensus 380 ~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~ 427 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHEN 427 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCC
Confidence 99999999998543 469999999999999999988764
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=148.41 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=66.2
Q ss_pred hhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhcc-ccccEEEcCCCCCcchhhHhhc
Q psy17257 195 ILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFK-DTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 195 ~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~-~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
+.++++|++|++++|.+ ++..+...+.++++|++|++++|.++ +. ....+..+. ++|+.|++++|.+....+..++
T Consensus 119 ~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIF-LV-CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp CSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCC-CC-CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred ccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCC-ee-CHHHcccccCCccceEECCCCccccccccchh
Confidence 37889999999999988 55333346788999999999999886 21 112333321 5899999999988765555555
Q ss_pred CCCC------ccEEeccCCCC
Q psy17257 274 SLPL------LRRLDISVSSD 288 (778)
Q Consensus 274 ~L~~------L~~LdLS~~~~ 288 (778)
.+++ |++||+++|..
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCS
T ss_pred hcCCccccCceeEEecCCCcC
Confidence 5544 99999999976
No 101
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.17 E-value=2.8e-10 Score=117.10 Aligned_cols=209 Identities=20% Similarity=0.266 Sum_probs=169.8
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.+|..|...+..+++. +.+....+.+.|.+..+++.++... ..+..-+..+|+|++..+++++..+++.||++
T Consensus 26 ~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 26 MQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp SSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 77999999999777776 5666777778899999998886432 44556688889999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhh-hcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLR-PKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~-~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|+. ++++++...++.|+|++...+-+ ..++....++.+.++|++ +..+|...|+++|++++...+
T Consensus 100 ~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~----- 170 (252)
T 4db8_A 100 ALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGN----- 170 (252)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCH-----
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCh-----
Confidence 99999997 47889999999999999998887 778888999999999988 467999999999999987421
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHH
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQ 770 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~ 770 (778)
..+..+. ...-..++..+|.. ..|.++..|+||+.++|..+| .....++++||++.|.
T Consensus 171 --~~~~~~~------------------~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~ 228 (252)
T 4db8_A 171 --EQIQAVI------------------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLE 228 (252)
T ss_dssp --HHHHHHH------------------HTTCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHH
T ss_pred --HHHHHHH------------------HCCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHH
Confidence 1111111 12334678888874 478999999999999997654 5677888999999999
Q ss_pred HHhhccC
Q psy17257 771 NLLDNEN 777 (778)
Q Consensus 771 ~~~~~~~ 777 (778)
.+..+++
T Consensus 229 ~ll~~~~ 235 (252)
T 4db8_A 229 QLQSHEN 235 (252)
T ss_dssp TTTTCSS
T ss_pred HHhCCCC
Confidence 8887654
No 102
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.15 E-value=4.9e-11 Score=136.69 Aligned_cols=205 Identities=10% Similarity=0.077 Sum_probs=129.6
Q ss_pred CCCceeEEEeeCCcc--CHHHHH-hhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCC--ccccchhhh
Q psy17257 84 DITHMKSVKLRNAEV--SDSGMQ-KLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMF--PDCLESEVV 158 (778)
Q Consensus 84 ~~~~L~~L~L~~~~i--sd~~l~-~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~--~~~~~~~~~ 158 (778)
...+|+.++++++.+ .+..+. .+...+|+.|++++| .++.... ...+++|++|++++|.... +..+.
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~---- 345 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCG---- 345 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS-CCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCC----
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCC-ccccccc---hhhCCcccEEEeECCccChhhhhhhc----
Confidence 346888888888775 222333 223456888888877 3443221 0346778888888876642 11111
Q ss_pred hccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcccc
Q psy17257 159 VGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFL 238 (778)
Q Consensus 159 l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~ 238 (778)
..+..+.+..+ .+...+ +. ..+..+..+++|+.|++++|.+ ++......+..+++|+.|++++|.++
T Consensus 346 ---~l~~L~~L~L~-------~N~l~~-l~-~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 346 ---HLTELETLILQ-------MNQLKE-LS-KIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ---CCSSCCEEECC-------SSCCCB-HH-HHHHHHTTCTTCCEEECCSSCC-BCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ---cCCCCCEEEcc-------CCccCc-cc-cchHHHhhCCCCCEEECCCCcC-CcccccchhccCccCCEEECcCCCCC
Confidence 11111111110 000000 00 0112347899999999999998 54222225678899999999999997
Q ss_pred CCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEee
Q psy17257 239 FDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318 (778)
Q Consensus 239 ~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDL 318 (778)
+. +. ..+.++|+.|++++|+++ .++..++.+++|++||+++|++ +. + |.. .+..+++|+.||+
T Consensus 413 -~~--~~--~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l-~~---l---~~~----~~~~l~~L~~L~l 475 (520)
T 2z7x_B 413 -DT--IF--RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KS---V---PDG----IFDRLTSLQKIWL 475 (520)
T ss_dssp -GG--GG--GSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC-CC---C---CTT----TTTTCTTCCEEEC
T ss_pred -cc--hh--hhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC-Cc---c---CHH----HhccCCcccEEEC
Confidence 21 11 122258999999999988 5677778999999999999987 21 2 211 2678999999999
Q ss_pred cCCCCCCC
Q psy17257 319 SGTNLAGR 326 (778)
Q Consensus 319 Sgn~l~~~ 326 (778)
++|++..+
T Consensus 476 ~~N~~~c~ 483 (520)
T 2z7x_B 476 HTNPWDCS 483 (520)
T ss_dssp CSSCBCCC
T ss_pred cCCCCccc
Confidence 99998764
No 103
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.15 E-value=1.9e-10 Score=117.74 Aligned_cols=209 Identities=22% Similarity=0.274 Sum_probs=169.2
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|...+..++.. +++....+.+.|.++.+++.++.. ...+.+.+..+++|++..+++++..+++.||++
T Consensus 16 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 16 SETQKEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp HHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 67888899998888776 446667777889999999888653 145567788899999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhh-hhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVA-EVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~nia-ev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|+. ++++++...++.|+|++ ...+.+..++....+..+.++|++ +..+|...|+++|++|+...+
T Consensus 90 ~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~----- 160 (252)
T 4hxt_A 90 VLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPD----- 160 (252)
T ss_dssp HHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH-----
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCH-----
Confidence 99999994 57899999999999999 557788888889999999999998 468899999999999987421
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHH
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQ 770 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~ 770 (778)
..+..+. ...-..++..+|. ...|.++..|+||+.++|..+ ...+..+.+.||++.|.
T Consensus 161 --~~~~~~~------------------~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~ 218 (252)
T 4hxt_A 161 --EAIKAIV------------------DAGGVEVLVKLLT-STDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQ 218 (252)
T ss_dssp --HHHHHHH------------------HTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHH
T ss_pred --HHHHHHH------------------HCcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHH
Confidence 1112111 1233466777777 456899999999999999854 55788999999999999
Q ss_pred HHhhccC
Q psy17257 771 NLLDNEN 777 (778)
Q Consensus 771 ~~~~~~~ 777 (778)
++..+++
T Consensus 219 ~ll~~~~ 225 (252)
T 4hxt_A 219 KLLTSTD 225 (252)
T ss_dssp HGGGCSC
T ss_pred HHHCCCc
Confidence 9987754
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=2.8e-11 Score=121.36 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=65.1
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|++|++++|.+ +... ...+..+++|++|++++|.++ .+. .+..+ ++|++|++++|.+++.....+.
T Consensus 73 ~~l~~L~~L~Ls~n~l-~~~~-~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQL-QSLP-NGVFDKLTQLKELALNTNQLQ----SLPDGVFDKL-TQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp TTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTT
T ss_pred CCCCCcCEEECCCCcC-CccC-HhHhcCccCCCEEEcCCCcCc----ccCHhHhccC-CcCCEEECCCCccceeCHHHhc
Confidence 5567777777777766 3321 224556777777777777766 332 24555 5777777777776643333456
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+++|++|++++|+. ...+++|+.|++++|.+.+
T Consensus 146 ~l~~L~~L~l~~N~~------------------~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPW------------------DCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TCTTCCEEECCSCCB------------------CCCTTTTHHHHHHHHHCTT
T ss_pred cCCCccEEEecCCCe------------------ecCCCCHHHHHHHHHhCCc
Confidence 677777777777754 1345667777777776653
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=3e-11 Score=114.43 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=102.3
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
...++|+.|++++|.+ ++..++..+..+++|+.|++++|.++ .+..+..+ ++|++|++++|.+++..+..+..+
T Consensus 14 ~~~~~l~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 14 RTPSDVKELVLDNSRS-NEGKLEGLTDEFEELEFLSTINVGLT----SIANLPKL-NKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CCGGGCSEEECTTCBC-BTTBCCSCCTTCTTCCEEECTTSCCC----CCTTCCCC-TTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCCccCeEEEccCCcC-ChhHHHHHHhhcCCCcEEECcCCCCC----CchhhhcC-CCCCEEECCCCcccchHHHHhhhC
Confidence 3457899999999998 63344446788999999999999998 55667777 799999999999987667777789
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ ++ . + ....+..+++|+.||+++|.+.+..... +... ...+
T Consensus 88 ~~L~~L~ls~N~i-~~---~---~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------------~~~~-~~l~ 140 (149)
T 2je0_A 88 PNLTHLNLSGNKI-KD---L---S---TIEPLKKLENLKSLDLFNCEVTNLNDYR----------------ENVF-KLLP 140 (149)
T ss_dssp TTCCEEECTTSCC-CS---H---H---HHGGGGGCTTCCEEECTTCGGGGSTTHH----------------HHHH-HHCT
T ss_pred CCCCEEECCCCcC-CC---h---H---HHHHHhhCCCCCEEeCcCCcccchHHHH----------------HHHH-HHCC
Confidence 9999999999987 21 1 0 1124788999999999999875321100 0133 2678
Q ss_pred cceEeeccc
Q psy17257 356 PLEFLGLYG 364 (778)
Q Consensus 356 ~L~~L~L~~ 364 (778)
+|++|++.+
T Consensus 141 ~L~~L~l~d 149 (149)
T 2je0_A 141 QLTYLDGYD 149 (149)
T ss_dssp TCCEETTBC
T ss_pred CcccccCCC
Confidence 899988753
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.9e-10 Score=120.10 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=115.7
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+|+.|++++|.+++.. .+. .++|++|++++| .+++... ...+++|+.|++++|.... .+
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~---l~---------- 101 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKN---LN---------- 101 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSC---CT----------
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCC---cC----------
Confidence 58999999999987533 343 689999999998 5765332 3567899999999997642 11
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
.+ .. ++|+.|++++|.+ ++- + .+..+++|+.||+++|.++ ++
T Consensus 102 ----------------------------~~-~~-~~L~~L~L~~N~l-~~~--~-~l~~l~~L~~L~Ls~N~i~----~~ 143 (263)
T 1xeu_A 102 ----------------------------GI-PS-ACLSRLFLDNNEL-RDT--D-SLIHLKNLEILSIRNNKLK----SI 143 (263)
T ss_dssp ----------------------------TC-CC-SSCCEEECCSSCC-SBS--G-GGTTCTTCCEEECTTSCCC----BC
T ss_pred ----------------------------cc-cc-CcccEEEccCCcc-CCC--h-hhcCcccccEEECCCCcCC----CC
Confidence 11 22 8999999999998 552 3 4778999999999999998 67
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
+.+..+ ++|+.|++++|.+.+. ..+..+++|++||+++|++
T Consensus 144 ~~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 144 VMLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp GGGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred hHHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 788888 7999999999999764 6688999999999999987
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=1.1e-10 Score=135.15 Aligned_cols=184 Identities=14% Similarity=0.070 Sum_probs=113.4
Q ss_pred CceeEEEeeCCccCHHHHH-hhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQ-KLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQR 164 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~-~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p 164 (778)
.+++.|+|+++.++. +. .+ .++|+.|+|++| +++. ++ ..+++|+.|+|++|.+.. ++
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~~l-~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N~l~~---ip---------- 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPDNL-PPQITVLEITQN-ALIS--LP---ELPASLEYLDACDNRLST---LP---------- 116 (571)
T ss_dssp TTCSEEECCSSCCSC--CCSCC-CTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSSCCSC---CC----------
T ss_pred CCccEEEeCCCCCCc--cCHhH-cCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCCCCCC---cc----------
Confidence 479999999998875 22 12 368999999998 5763 33 456899999999997641 22
Q ss_pred cccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc
Q psy17257 165 ADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL 244 (778)
Q Consensus 165 ~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l 244 (778)
.+ .. +|+.|++++|.+ ++ ++. .+++|+.|++++|.++ .+
T Consensus 117 ----------------------------~l-~~--~L~~L~Ls~N~l-~~--lp~---~l~~L~~L~Ls~N~l~----~l 155 (571)
T 3cvr_A 117 ----------------------------EL-PA--SLKHLDVDNNQL-TM--LPE---LPALLEYINADNNQLT----ML 155 (571)
T ss_dssp ----------------------------CC-CT--TCCEEECCSSCC-SC--CCC---CCTTCCEEECCSSCCS----CC
T ss_pred ----------------------------hh-hc--CCCEEECCCCcC-CC--CCC---cCccccEEeCCCCccC----cC
Confidence 11 11 777777777777 43 221 5677777888777776 44
Q ss_pred hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 245 ~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+. .+ ++|+.|+|++|++++ ++. +. ++|++||+++|.+ + .+ |. ....+....+.|+.||+++|.+.
T Consensus 156 p~--~l-~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L-~---~l---p~-~~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 156 PE--LP-TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL-E---SL---PA-VPVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp CC--CC-TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC-S---SC---CC-CC--------CCEEEECCSSCCC
T ss_pred CC--cC-CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC-C---ch---hh-HHHhhhcccccceEEecCCCcce
Confidence 43 34 577777777777665 333 33 7777777777776 2 11 11 00012233344577777777664
Q ss_pred CCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 325 GRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 325 ~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
. ||.-+. ..++|++|.|.+|.+.
T Consensus 221 ~--------------------lp~~l~-~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 221 H--------------------IPENIL-SLDPTCTIILEDNPLS 243 (571)
T ss_dssp C--------------------CCGGGG-GSCTTEEEECCSSSCC
T ss_pred e--------------------cCHHHh-cCCCCCEEEeeCCcCC
Confidence 2 233222 4667777777777754
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=2.5e-10 Score=114.38 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=87.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|++|++++|.+ +... ...+..+++|++|++++|.++ .+. .+..+ ++|++|++++|.+.......+.
T Consensus 49 ~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~ 121 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKL-QSLP-NGVFNKLTSLTYLNLSTNQLQ----SLPNGVFDKL-TQLKELALNTNQLQSLPDGVFD 121 (208)
T ss_dssp TTCTTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcEEECCCCcc-CccC-hhhcCCCCCcCEEECCCCcCC----ccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhc
Confidence 6789999999999988 5422 235678999999999999987 343 35677 7999999999998764445578
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+++|++|++++|.+ +. + +. ..+..+++|+.|++++|.+.+
T Consensus 122 ~l~~L~~L~l~~N~l-~~---~---~~----~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQL-KS---V---PD----GVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TCTTCCEEECCSSCC-SC---C---CT----TTTTTCTTCCEEECCSCCBCC
T ss_pred cCCcCCEEECCCCcc-ce---e---CH----HHhccCCCccEEEecCCCeec
Confidence 899999999999987 21 1 11 125779999999999997653
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.09 E-value=5e-10 Score=108.18 Aligned_cols=113 Identities=22% Similarity=0.229 Sum_probs=88.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcch-hhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVKD-NLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~~-~~~~l~ 273 (778)
..+++|+.|++++|.+ ++. ..+..+++|++|++++|.++ + .++. +..+ ++|++|++++|.+++. .+..+.
T Consensus 46 ~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~N~l~-~--~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 46 AEFVNLEFLSLINVGL-ISV---SNLPKLPKLKKLELSENRIF-G--GLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGGGGCCEEEEESSCC-CCC---SSCCCCSSCCEEEEESCCCC-S--CCCHHHHHC-TTCCEEECBSSSCCSSGGGGGGS
T ss_pred HhCCCCCEEeCcCCCC-CCh---hhhccCCCCCEEECcCCcCc-h--HHHHHHhhC-CCCCEEeccCCccCcchhHHHHh
Confidence 6678999999999998 553 46778999999999999998 2 1544 4457 7999999999998763 346788
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
.+++|++|++++|++ +. . | ......+..+|+|++||+++|.+.
T Consensus 118 ~l~~L~~L~l~~N~l-~~---~---~-~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 118 KLECLKSLDLFNCEV-TN---L---N-DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SCSCCCEEECCSSGG-GT---S---T-THHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCCCCEEEeeCCcC-cc---h---H-HHHHHHHHhCccCcEecCCCCChh
Confidence 999999999999987 21 1 1 112224788999999999999864
No 110
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.09 E-value=5.2e-10 Score=136.12 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=47.6
Q ss_pred ccchhhHhhccCCCCceeEEEeeCCccCHHHHHh--hc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCC
Q psy17257 72 VIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQK--LL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSM 148 (778)
Q Consensus 72 l~d~~~~~f~~~~~~~L~~L~L~~~~isd~~l~~--L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~ 148 (778)
++......|... .+|+.|+|++|.+++..+.. +. .++|++|+|++| .++...+......+++|+.|+|++|...
T Consensus 85 l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 85 IYFLHPDAFQGL--FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCEECTTSSCSC--SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcccCHhHccCC--cccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 454445556543 68888888888877543332 33 578888888887 4654322222245778888888888764
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.09 E-value=3.7e-11 Score=116.20 Aligned_cols=139 Identities=20% Similarity=0.182 Sum_probs=106.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
...++|+.|++++|.+ ++..++..+..+++|+.|++++|.++ .+..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 21 ~~~~~L~~L~l~~n~l-~~~~i~~~~~~l~~L~~L~l~~n~l~----~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDNCKS-NDGKIEGLTAEFVNLEFLSLINVGLI----SVSNLPKL-PKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp SCTTSCSEEECCSCBC-BTTBCSSCCGGGGGCCEEEEESSCCC----CCSSCCCC-SSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CCcccCCEEECCCCCC-ChhhHHHHHHhCCCCCEEeCcCCCCC----ChhhhccC-CCCCEEECcCCcCchHHHHHHhhC
Confidence 4558899999999998 63344546788999999999999998 55667778 799999999999987666667779
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ ++ + +. +. .+..+++|+.||+++|.+.+..... ...+ ...+
T Consensus 95 ~~L~~L~Ls~N~l-~~---~-~~----~~-~l~~l~~L~~L~l~~N~l~~~~~~~----------------~~~~-~~l~ 147 (168)
T 2ell_A 95 PNLTHLNLSGNKL-KD---I-ST----LE-PLKKLECLKSLDLFNCEVTNLNDYR----------------ESVF-KLLP 147 (168)
T ss_dssp TTCCEEECBSSSC-CS---S-GG----GG-GGSSCSCCCEEECCSSGGGTSTTHH----------------HHHH-TTCS
T ss_pred CCCCEEeccCCcc-Cc---c-hh----HH-HHhcCCCCCEEEeeCCcCcchHHHH----------------HHHH-HhCc
Confidence 9999999999987 21 1 11 11 3678999999999999876421100 0133 3678
Q ss_pred cceEeeccccCC
Q psy17257 356 PLEFLGLYGTKH 367 (778)
Q Consensus 356 ~L~~L~L~~t~~ 367 (778)
+|++|.+.+|..
T Consensus 148 ~L~~L~l~~n~~ 159 (168)
T 2ell_A 148 QLTYLDGYDRED 159 (168)
T ss_dssp SCCEETTEETTS
T ss_pred cCcEecCCCCCh
Confidence 999999998874
No 112
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.08 E-value=4.9e-11 Score=122.35 Aligned_cols=181 Identities=11% Similarity=0.079 Sum_probs=127.8
Q ss_pred cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCc
Q psy17257 108 SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSL 187 (778)
Q Consensus 108 ~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l 187 (778)
..+|++|++++| +++.-....+ ..+++|+.|++++|..+. .++.
T Consensus 30 ~~~l~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n~~l~--~i~~-------------------------------- 73 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTIPSHAF-SNLPNISRIYVSIDVTLQ--QLES-------------------------------- 73 (239)
T ss_dssp CTTCCEEEEESC-CCSEECTTTT-TTCTTCCEEEEECCSSCC--EECT--------------------------------
T ss_pred CCcccEEEEeCC-cceEECHHHc-cCCCCCcEEeCCCCCCcc--eeCH--------------------------------
Confidence 358999999998 5764221123 457899999999997331 1110
Q ss_pred ccchhhhhhcCCCccEEEecC-CcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhcccccc---EEEcCCC-
Q psy17257 188 TYKQRGYILKAPKLRRFSLIG-HTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLV---SLVLFNV- 262 (778)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~-~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~---~L~L~~~- 262 (778)
..| ..+++|++|++++ |.+ +.-. ...+..+++|+.|++++|.++ .++.+..+ ++|+ .|++++|
T Consensus 74 ----~~f-~~l~~L~~L~l~~~n~l-~~i~-~~~f~~l~~L~~L~l~~n~l~----~lp~~~~l-~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 74 ----HSF-YNLSKVTHIEIRNTRNL-TYID-PDALKELPLLKFLGIFNTGLK----MFPDLTKV-YSTDIFFILEITDNP 141 (239)
T ss_dssp ----TTE-ESCTTCCEEEEEEETTC-CEEC-TTSEECCTTCCEEEEEEECCC----SCCCCTTC-CBCCSEEEEEEESCT
T ss_pred ----hHc-CCCcCCcEEECCCCCCe-eEcC-HHHhCCCCCCCEEeCCCCCCc----cccccccc-cccccccEEECCCCc
Confidence 012 7889999999998 887 5422 236778999999999999998 55556666 6777 9999999
Q ss_pred CCcchhhHhhcCCCCcc-EEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC-CCCCccccccCCCCCCCC
Q psy17257 263 SIVKDNLDHICSLPLLR-RLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN-LAGRGVAEFSSKGSPDVP 340 (778)
Q Consensus 263 ~~~~~~~~~l~~L~~L~-~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~-l~~~~~~~~~~~~s~~~~ 340 (778)
.+..-....+.++++|+ +|++++|.+ + .+ |.. .+.. ++|+.|++++|. +.+ +..
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l-~---~i---~~~----~~~~-~~L~~L~L~~n~~l~~--i~~---------- 197 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGF-T---SV---QGY----AFNG-TKLDAVYLNKNKYLTV--IDK---------- 197 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCC-C---EE---CTT----TTTT-CEEEEEECTTCTTCCE--ECT----------
T ss_pred chhhcCcccccchhcceeEEEcCCCCC-c---cc---CHh----hcCC-CCCCEEEcCCCCCccc--CCH----------
Confidence 77654445578899999 999999987 2 11 110 1233 799999999995 642 211
Q ss_pred CccCCccccccccC-ccceEeeccccCCC
Q psy17257 341 YVTTDIPGLASRVD-RPLEFLGLYGTKHG 368 (778)
Q Consensus 341 ~~~~~i~~l~~~~~-~~L~~L~L~~t~~~ 368 (778)
... ... ++|+.|.|.++.+.
T Consensus 198 -------~~~-~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 198 -------DAF-GGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -------TTT-TTCSBCCSEEECTTCCCC
T ss_pred -------HHh-hccccCCcEEECCCCccc
Confidence 122 245 78999999998865
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=1.3e-10 Score=110.08 Aligned_cols=109 Identities=21% Similarity=0.188 Sum_probs=81.6
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcc-hhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVK-DNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~-~~~~~l~ 273 (778)
..+++|+.|++++|.+ ++. ..+..+++|+.|++++|.++ + .++. +..+ ++|++|++++|.+++ ..+..+.
T Consensus 39 ~~l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n~i~-~--~~~~~~~~l-~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 39 DEFEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDNRVS-G--GLEVLAEKC-PNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp TTCTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSSCCC-S--CTHHHHHHC-TTCCEEECTTSCCCSHHHHGGGG
T ss_pred hhcCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCCccc-c--hHHHHhhhC-CCCCEEECCCCcCCChHHHHHHh
Confidence 6778999999999988 543 36778899999999999987 2 1444 4457 789999999999876 3446788
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISG 320 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSg 320 (778)
.+++|++|++++|++ ++ . | ......+..+|+|+.||+++
T Consensus 111 ~l~~L~~L~l~~N~l-~~---~---~-~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 111 KLENLKSLDLFNCEV-TN---L---N-DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GCTTCCEEECTTCGG-GG---S---T-THHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEeCcCCcc-cc---h---H-HHHHHHHHHCCCcccccCCC
Confidence 899999999999987 21 1 1 11122477899999999874
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.06 E-value=5.4e-10 Score=113.41 Aligned_cols=113 Identities=15% Similarity=0.221 Sum_probs=86.3
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|+.|++++|.+ +... ...+..+++|+.|++++|.++ .+. .+..+ ++|++|+|++|++....+..+.
T Consensus 54 ~~l~~L~~L~L~~N~i-~~i~-~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 54 KKLPQLRKINFSNNKI-TDIE-EGAFEGASGVNEILLTSNRLE----NVQHKMFKGL-ESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp GGCTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSCCC----CCCGGGGTTC-SSCCEEECTTSCCCCBCTTSST
T ss_pred ccCCCCCEEECCCCcC-CEEC-HHHhCCCCCCCEEECCCCccC----ccCHhHhcCC-cCCCEEECCCCcCCeECHhHcC
Confidence 6788999999999988 5422 225678899999999999887 332 36677 7899999999998876667788
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
.+++|++|++++|.+ +. . .|. .+..+++|+.|++++|.+..+
T Consensus 127 ~l~~L~~L~L~~N~l-~~--~---~~~-----~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 127 GLSSVRLLSLYDNQI-TT--V---APG-----AFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCTTCSEEECTTSCC-CC--B---CTT-----TTTTCTTCCEEECCSCCEECS
T ss_pred CCccCCEEECCCCcC-CE--E---CHH-----HhcCCCCCCEEEecCcCCcCC
Confidence 899999999999987 21 1 111 367789999999999987654
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.05 E-value=5e-10 Score=114.34 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=112.4
Q ss_pred CccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCccc
Q psy17257 110 HVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTY 189 (778)
Q Consensus 110 ~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~ 189 (778)
..+.++.+++ .++. ++ ....++|+.|+|++|.+.. ..+
T Consensus 20 s~~~v~c~~~-~l~~--ip--~~~~~~L~~L~Ls~n~i~~--~~~----------------------------------- 57 (229)
T 3e6j_A 20 SGTTVDCRSK-RHAS--VP--AGIPTNAQILYLHDNQITK--LEP----------------------------------- 57 (229)
T ss_dssp ETTEEECTTS-CCSS--CC--SCCCTTCSEEECCSSCCCC--CCT-----------------------------------
T ss_pred eCCEeEccCC-CcCc--cC--CCCCCCCCEEEcCCCccCc--cCH-----------------------------------
Confidence 4566777775 3432 11 0224789999999987642 111
Q ss_pred chhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH--HHhccccccEEEcCCCCCcch
Q psy17257 190 KQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF--LAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 190 ~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~--L~~l~~~L~~L~L~~~~~~~~ 267 (778)
..+..+++|+.|++++|.+ +.-. ...+..+++|+.|||++|.++ .+.. +..+ ++|+.|+|++|++. .
T Consensus 58 ---~~~~~l~~L~~L~L~~N~l-~~i~-~~~~~~l~~L~~L~Ls~N~l~----~l~~~~~~~l-~~L~~L~Ls~N~l~-~ 126 (229)
T 3e6j_A 58 ---GVFDSLINLKELYLGSNQL-GALP-VGVFDSLTQLTVLDLGTNQLT----VLPSAVFDRL-VHLKELFMCCNKLT-E 126 (229)
T ss_dssp ---TTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCC-S
T ss_pred ---HHhhCccCCcEEECCCCCC-CCcC-hhhcccCCCcCEEECCCCcCC----ccChhHhCcc-hhhCeEeccCCccc-c
Confidence 1126789999999999998 4422 235678999999999999998 4432 5677 79999999999987 5
Q ss_pred hhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 268 NLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
++..+..+++|++|++++|.+ +. + +. ..+..+++|+.|++++|.+..+
T Consensus 127 lp~~~~~l~~L~~L~L~~N~l-~~---~---~~----~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 127 LPRGIERLTHLTHLALDQNQL-KS---I---PH----GAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTGGGCTTCSEEECCSSCC-CC---C---CT----TTTTTCTTCCEEECTTSCBCTT
T ss_pred cCcccccCCCCCEEECCCCcC-Cc---c---CH----HHHhCCCCCCEEEeeCCCccCC
Confidence 667788999999999999987 21 1 11 1367899999999999998754
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.05 E-value=5.3e-10 Score=130.83 Aligned_cols=136 Identities=17% Similarity=0.046 Sum_probs=66.8
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
++|+.|++++|.+ +. ++ ..+++|+.|++++|.++ .++.. . ++|+.|.+++|.++. ++ ..+++|
T Consensus 161 ~~L~~L~L~~N~l-~~--l~---~~~~~L~~L~Ls~N~l~----~l~~~--~-~~L~~L~L~~N~l~~-l~---~~~~~L 223 (622)
T 3g06_A 161 SELCKLWAYNNQL-TS--LP---MLPSGLQELSVSDNQLA----SLPTL--P-SELYKLWAYNNRLTS-LP---ALPSGL 223 (622)
T ss_dssp TTCCEEECCSSCC-SC--CC---CCCTTCCEEECCSSCCS----CCCCC--C-TTCCEEECCSSCCSS-CC---CCCTTC
T ss_pred CCCCEEECCCCCC-CC--Cc---ccCCCCcEEECCCCCCC----CCCCc--c-chhhEEECcCCcccc-cC---CCCCCC
Confidence 4555555555555 32 11 33566666676666665 33221 2 456666666665542 11 123566
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCC-CCCCCCCccCCccccccccCccc
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSK-GSPDVPYVTTDIPGLASRVDRPL 357 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~-~s~~~~~~~~~i~~l~~~~~~~L 357 (778)
++|++++|.+ +. + ...+++|+.|++++|.+.+-+....... .... ....+.||.-+. ..++|
T Consensus 224 ~~L~Ls~N~L-~~---l-----------p~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls-~N~L~~lp~~l~-~l~~L 286 (622)
T 3g06_A 224 KELIVSGNRL-TS---L-----------PVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-RNQLTRLPESLI-HLSSE 286 (622)
T ss_dssp CEEECCSSCC-SC---C-----------CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC-SSCCCSCCGGGG-GSCTT
T ss_pred CEEEccCCcc-Cc---C-----------CCCCCcCcEEECCCCCCCcCCcccccCcEEeCC-CCCCCcCCHHHh-hcccc
Confidence 6777776665 10 1 1344666666666666542111000000 0000 011224555443 66788
Q ss_pred eEeeccccCCC
Q psy17257 358 EFLGLYGTKHG 368 (778)
Q Consensus 358 ~~L~L~~t~~~ 368 (778)
+.|.|.+|.+.
T Consensus 287 ~~L~L~~N~l~ 297 (622)
T 3g06_A 287 TTVNLEGNPLS 297 (622)
T ss_dssp CEEECCSCCCC
T ss_pred CEEEecCCCCC
Confidence 88888888754
No 117
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.05 E-value=1.1e-09 Score=129.09 Aligned_cols=325 Identities=15% Similarity=0.157 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
+++..++..++... ...++..+..+|.+|+..... -..-....++..|+..+... +..+++++..+|.+..--..
T Consensus 182 g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~--~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 182 GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp THHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTH--HHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHHHHHGGGCT
T ss_pred CChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCccc--HHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhhcch
Confidence 34556666666553 335667788889998753221 01111123455666655432 46688887766655421111
Q ss_pred ccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhH
Q psy17257 504 VQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDIL 583 (778)
Q Consensus 504 ~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l 583 (778)
.......+...+++.+.. . | +.++..|..++..++.. +++....+-+.|.++.+++++...-+. +.+.
T Consensus 257 ~~~~~~~~i~~Lv~lL~~-~-d------~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~~~~~---~~v~ 324 (644)
T 2z6h_A 257 KQEGMEGLLGTLVQLLGS-D-D------INVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR---EDIT 324 (644)
T ss_dssp TCCSCHHHHHHHHHHTTC-S-C------HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHHTTC---HHHH
T ss_pred hhhhhhhHHHHHHHHHcC-C-C------HHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHccCCc---HHHH
Confidence 111223455555555542 2 4 77899999999888775 556666666778899999988764321 3566
Q ss_pred HHHHHHHHhcccccH---HHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhh
Q psy17257 584 EVAWSAMWNVTDETA---INCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLV 660 (778)
Q Consensus 584 ~~~~s~lwn~tde~p---~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll 660 (778)
+-+..+|+|++...+ .+-..+++.+|++.+++.|..- .+.+++..+.+.|+|++.-.+-|..++....+..+.++|
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHH
Confidence 778889999986554 3445588999999999999864 356899999999999998888888888899999999999
Q ss_pred ccCCCCchhhHHHHHHHHH--HhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhh
Q psy17257 661 SSKSDGIEVSYNAAGVLSH--IASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQ 738 (778)
Q Consensus 661 ~~~~~~~evsy~a~gilah--l~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q 738 (778)
.+. ..+|...||-.+++ +++.+ + .+.-++.+...|+ .+-+.+.....++.+.-..|+..+|.. ..+.+|
T Consensus 404 ~~~--~~~vr~~a~~al~n~~~~~~~----~-~~~v~~~a~~aL~-~La~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~ 474 (644)
T 2z6h_A 404 VRA--HQDTQRRTSMGGTQQQFVEGV----R-MEEIVEGCTGALH-ILARDVHNRIVIRGLNTIPLFVQLLYS-PIENIQ 474 (644)
T ss_dssp HHH--HHHHTTC----------CCSS----C-HHHHHHHHHHHHH-HHTTSHHHHHHHHHTTCHHHHHHHTTC-SCHHHH
T ss_pred hcc--chhhhhHhhhccccchhcccc----c-HHHHHHHHHHHHH-HHhcCHHHHHHHHhCCcHHHHHHHHcC-CCHHHH
Confidence 873 34455555554444 32211 0 1112223333332 112222111223356777899999974 568899
Q ss_pred HHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 739 HWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 739 ~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.+|+||+.+++.. +.++.++.+.||++.|.++..+++
T Consensus 475 ~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~ 511 (644)
T 2z6h_A 475 RVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRN 511 (644)
T ss_dssp HHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCC
Confidence 9999999999863 678999999999999999998765
No 118
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.03 E-value=4.8e-09 Score=114.17 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=152.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHH-hcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFL-NNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~-~~~g~ 610 (778)
+.+|.-|+..+..++..-+.+-+..+.+.|.+..+++++.... ...+.+-+..+|||+.-.++++...++ +.||+
T Consensus 141 ~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~----~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai 216 (354)
T 3nmw_A 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK----KESTLKSVLSALWNLSAHCTENKADICAVDGAL 216 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcH
Confidence 5577777877777776545566778888899999999765321 135567788899999876777888888 79999
Q ss_pred HHHHHHHhhCCCcH--HHHHHHHhhhhhhhh----hhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccC
Q psy17257 611 ELFLNCLQYFPEKD--ELLRNMMGLLGNVAE----VKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 611 ~~~~~~l~~f~~~~--~l~~~~lgll~niae----v~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~ 684 (778)
+.+++.|..-.+.. +++++..+.|.|++- ..+-|..+.+...+..+.++|++ ...++-.+|+++|++++..
T Consensus 217 ~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~- 293 (354)
T 3nmw_A 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSAR- 293 (354)
T ss_dssp HHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC--CChHHHHHHHHHHHHHhCC-
Confidence 99999997432221 699999999999995 67788888888999999999998 4678999999999999863
Q ss_pred CCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhh
Q psy17257 685 PEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVE 761 (778)
Q Consensus 685 ~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~ 761 (778)
....|..+.+ +--..|+..||+ ...+.++.-|+||+.+++..+|.+|-..++
T Consensus 294 ------~~~~~~~i~~------------------~G~i~~Lv~LL~-s~~~~i~~~A~~aL~nL~~~~~~~~~~~~~ 345 (354)
T 3nmw_A 294 ------NPKDQEALWD------------------MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPAKYKDANI 345 (354)
T ss_dssp ------CHHHHHHHHH------------------TTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCCGGGC----
T ss_pred ------CHHHHHHHHH------------------CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHHHHhhhcc
Confidence 1223344433 333468888887 467899999999999999999999986543
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.02 E-value=5.2e-10 Score=113.48 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=91.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH--HHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF--LAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~--L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|+.|++++|.+ +... +..+..+++|++|+|++|.++ .++. +..+ ++|+.|+|++|.+....+..+.
T Consensus 53 ~~l~~L~~L~Ls~N~i-~~~~-~~~~~~l~~L~~L~Ls~N~l~----~l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQI-SELA-PDAFQGLRSLNSLVLYGNKIT----ELPKSLFEGL-FSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp TTCTTCCEEECCSSCC-CEEC-TTTTTTCSSCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred hCCCCCCEEECCCCcC-CCcC-HHHhhCCcCCCEEECCCCcCC----ccCHhHccCC-CCCCEEECCCCCCCEeCHHHcC
Confidence 6789999999999998 5432 336788999999999999998 4543 5677 7999999999999876677788
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
.+++|++||+++|.+ +. + + +. .+..+++|+.|++++|.+.-+
T Consensus 126 ~l~~L~~L~L~~N~l-~~---~-~-~~-----~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKL-QT---I-A-KG-----TFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TCTTCCEEECCSSCC-SC---C-C-TT-----TTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCcC-CE---E-C-HH-----HHhCCCCCCEEEeCCCCcCCC
Confidence 999999999999998 21 1 1 11 267799999999999987643
No 120
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.01 E-value=3.3e-09 Score=121.20 Aligned_cols=325 Identities=14% Similarity=0.160 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
.++..++..++ ..+..++..+..+|.++++.+... .........+..|+..+...+ +..+++++..+|.+...-
T Consensus 17 ~~i~~Lv~lL~--~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~-- 90 (529)
T 1jdh_A 17 RAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHH-- 90 (529)
T ss_dssp CHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS--
T ss_pred hhHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC--
Confidence 34455555444 235678889999999998764210 000111357778888776544 556788888877763221
Q ss_pred ccccHHHHHH-----HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q psy17257 504 VQFDYDRLVR-----ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQR 578 (778)
Q Consensus 504 ~~f~~~~~~~-----~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~ 578 (778)
+-+...+.+ .+++.+.. . | +.++..|+..+..++.. +++.+..+.+.|.+..++++++..
T Consensus 91 -~~~~~~i~~~g~i~~L~~lL~~-~-~------~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~----- 155 (529)
T 1jdh_A 91 -REGLLAIFKSGGIPALVKMLGS-P-V------DSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKT----- 155 (529)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTC-S-C------HHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCC-----
T ss_pred -chhHHHHHHcCCHHHHHHHHcC-C-C------HHHHHHHHHHHHHHhcC-CcchHHHHHHcCCHHHHHHHHhcC-----
Confidence 113333333 33333332 1 4 77889999888877665 334466667788889888888642
Q ss_pred cchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHH
Q psy17257 579 CDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFAN 658 (778)
Q Consensus 579 ~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ 658 (778)
...+...+..+++|++-.++++...+++.+|++.+++.|+... ....+....++|.|++...+.|..++....++.+.+
T Consensus 156 ~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ 234 (529)
T 1jdh_A 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 1334455667899998888999999999999999999999874 566778899999999998889999999999999999
Q ss_pred hhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC-------------------ccceec
Q psy17257 659 LVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS-------------------ERNINY 719 (778)
Q Consensus 659 ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~-------------------~~~v~y 719 (778)
++.+. ..++...|+++|+++....+ .+.. ...++..+...+..-+..- ..++..
T Consensus 235 ll~~~--~~~~~~~a~~~L~~l~~~~~-~~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 307 (529)
T 1jdh_A 235 HLTDP--SQRLVQNCLWTLRNLSDAAT-KQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307 (529)
T ss_dssp TTTSS--CHHHHHHHHHHHHHHHTTCT-TCSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHhCC--ChHHHHHHHHHHHHHhcCCh-hhHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 99884 68899999999999987543 2221 1244454444443211111 111233
Q ss_pred ccchhhHHhhccCC-CchhhHHHHHHHHHhcccCCc--cccchhhhhchHHHHHHHhhccC
Q psy17257 720 RSFEPIIQLLRVYH-TPECQHWSVWALANLTKVYPE--KYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 720 rsf~p~~~ll~~~~-~~~~q~wa~wa~~~~~~~~~~--~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.-..++..+|.... .+.++..|+||+.|++..+|+ .+...+.+.||++.|-.+..+++
T Consensus 308 ~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence 44678888888654 489999999999999998775 37778999999999988877653
No 121
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.00 E-value=1.9e-08 Score=115.41 Aligned_cols=342 Identities=14% Similarity=0.143 Sum_probs=229.5
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHHhccccccCCh-----HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCC
Q psy17257 385 NEAQLLIAAKAYIDRPEMLQQVLNDLYHIFRYDTCVDI-----EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDR 459 (778)
Q Consensus 385 ~~~qil~al~~y~~R~~~~~~aL~~L~~l~~~~~~~~~-----~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~ 459 (778)
+...++..+. .+.+.....|+..+..+...+...+. ..++..+++.++.. .+..+|..+..+|.+|+.....
T Consensus 75 ~l~~lv~~L~--s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 75 SLPAMIGGVY--SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp CHHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHH
Confidence 3455555552 23455566666666666543322222 23456666666543 3367999999999999875321
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHH-----HHHHHHHhhhcccCCCCCCchh
Q psy17257 460 PVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLV-----RILLHIITEMEHESNSNGSNFV 534 (778)
Q Consensus 460 ~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~-----~~~l~~~~~~~~d~~~~~~~~~ 534 (778)
. ...-....+|..|+..+.. + +..+++++..+|.+-. .+.+-....+. ..++..+.... | ..+
T Consensus 152 ~-~~~~~~~g~i~~L~~lL~~-~-~~~v~~~a~~aL~~l~--~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~------~~v 219 (528)
T 4b8j_A 152 N-TKVVIDHGAVPIFVKLLGS-S-SDDVREQAVWALGNVA--GDSPKCRDLVLANGALLPLLAQLNEHT-K------LSM 219 (528)
T ss_dssp H-HHHHHHTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHHH--HTCHHHHHHHHHTTCHHHHHHTCCTTC-C------HHH
T ss_pred H-HHHHHhCCcHHHHHHHhcC-C-CHHHHHHHHHHHHHHh--CCChhhHHHHHHCCcHHHHHHHHhcCC-C------HHH
Confidence 0 0011122467778887765 3 5678888887776653 12222222222 23333332222 4 778
Q ss_pred HHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHH
Q psy17257 535 LRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFL 614 (778)
Q Consensus 535 ~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~ 614 (778)
++.|+..++.++..-....... ..+.+..++++++.. ...+..-+..+|.++++..+.....+++.|+++.++
T Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~--~~~~l~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv 292 (528)
T 4b8j_A 220 LRNATWTLSNFCRGKPQPSFEQ--TRPALPALARLIHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292 (528)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHH--HTTHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcHHH--HHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHH
Confidence 8999998888876532111111 245666666665321 245567788889999999998889999999999999
Q ss_pred HHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccc
Q psy17257 615 NCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYP 693 (778)
Q Consensus 615 ~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~ 693 (778)
+.|.. .+++++...++.|||++.- .+.+..++....+..+..+|.+. ..-+|...||++|++|+... ..
T Consensus 293 ~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~~L~nl~~~~-------~~ 362 (528)
T 4b8j_A 293 ELLLH--PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNITAGN-------KD 362 (528)
T ss_dssp HHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHTSC-------HH
T ss_pred HHHcC--CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHHHHHHHHCCC-------HH
Confidence 99985 3678999999999999974 45666677888999999999973 16789999999999998721 11
Q ss_pred cHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHh
Q psy17257 694 AREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLL 773 (778)
Q Consensus 694 ~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~ 773 (778)
.+ +.++. ..-+.+++.+|... .+.++..|+|||.+++......++..++++|+++.|..+.
T Consensus 363 ~~----~~~~~--------------~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL 423 (528)
T 4b8j_A 363 QI----QAVIN--------------AGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423 (528)
T ss_dssp HH----HHHHH--------------TTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HH----HHHHH--------------CCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHH
Confidence 11 22221 22357888888754 7899999999999999975567889999999999999988
Q ss_pred hccC
Q psy17257 774 DNEN 777 (778)
Q Consensus 774 ~~~~ 777 (778)
.+++
T Consensus 424 ~~~d 427 (528)
T 4b8j_A 424 ICPD 427 (528)
T ss_dssp GCSC
T ss_pred cCCC
Confidence 7653
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=110.40 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=102.8
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCC
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~ 276 (778)
+.++.|++++|.+ +.......+..+++|++|++++|.++ .+. .+..+ ++|++|+|++|.++...+..+..++
T Consensus 32 ~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~----~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT----DIEEGAFEGA-SGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCC----EECTTTTTTC-TTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCC----EECHHHhCCC-CCCCEEECCCCccCccCHhHhcCCc
Confidence 4578999999998 55322235678999999999999998 443 47788 7999999999999876666788999
Q ss_pred CccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCcc
Q psy17257 277 LLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRP 356 (778)
Q Consensus 277 ~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~ 356 (778)
+|++|++++|.+ +. .. |. .+..+++|+.||+++|.+.+- . |..+ ...++
T Consensus 106 ~L~~L~Ls~N~l-~~--~~---~~-----~~~~l~~L~~L~L~~N~l~~~--~-----------------~~~~-~~l~~ 154 (220)
T 2v70_A 106 SLKTLMLRSNRI-TC--VG---ND-----SFIGLSSVRLLSLYDNQITTV--A-----------------PGAF-DTLHS 154 (220)
T ss_dssp SCCEEECTTSCC-CC--BC---TT-----SSTTCTTCSEEECTTSCCCCB--C-----------------TTTT-TTCTT
T ss_pred CCCEEECCCCcC-Ce--EC---Hh-----HcCCCccCCEEECCCCcCCEE--C-----------------HHHh-cCCCC
Confidence 999999999998 21 11 11 267899999999999988642 1 1233 25688
Q ss_pred ceEeeccccCCC
Q psy17257 357 LEFLGLYGTKHG 368 (778)
Q Consensus 357 L~~L~L~~t~~~ 368 (778)
|+.|.|.++++.
T Consensus 155 L~~L~L~~N~l~ 166 (220)
T 2v70_A 155 LSTLNLLANPFN 166 (220)
T ss_dssp CCEEECCSCCEE
T ss_pred CCEEEecCcCCc
Confidence 999999999854
No 123
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.99 E-value=6.3e-09 Score=116.84 Aligned_cols=193 Identities=20% Similarity=0.294 Sum_probs=149.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHH-hcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFL-NNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~-~~~g~ 610 (778)
+.++.-|+..+..++..-+.+-+..+.+.|.++.+++++.... ...+.+-+..++||+.-.++++...++ +.||+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~----~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal 332 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK----KESTLKSVLSALWNLSAHCTENKADICAVDGAL 332 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC----SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC----CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcH
Confidence 5566777777777766545566777888899999999764321 135667788999999876677778888 79999
Q ss_pred HHHHHHHhhCCCcH--HHHHHHHhhhhhhhh----hhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccC
Q psy17257 611 ELFLNCLQYFPEKD--ELLRNMMGLLGNVAE----VKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 611 ~~~~~~l~~f~~~~--~l~~~~lgll~niae----v~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~ 684 (778)
+.+++.|..-.+.. +++.+..+.|.|++- ..+-|..+.....+..+..+|.+ ...+|-.+||++|++++...
T Consensus 333 ~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHHHHHHHcCC
Confidence 99999998543222 689999999999995 67778888888899999999998 46789999999999998631
Q ss_pred CCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccc
Q psy17257 685 PEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY 756 (778)
Q Consensus 685 ~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y 756 (778)
...|..+.+ .--..|+..||. ...+.++.-|+|||.|+++.+|.||
T Consensus 411 -------~~~~~~i~~------------------~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 411 -------PKDQEALWD------------------MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp -------HHHHHHHHH------------------HTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred -------HHHHHHHHH------------------CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 223344433 223478888887 4688999999999999999999999
No 124
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.98 E-value=1.8e-08 Score=113.23 Aligned_cols=214 Identities=17% Similarity=0.238 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccc-cHHHHHHHHhcCC
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDE-TAINCARFLNNGG 609 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde-~p~~c~~f~~~~g 609 (778)
+.+|+-|...+..++.. +.+.+..+. ..|.+..++++++.. ...+.+-+-.+|+|++.. .+.+-..+++.||
T Consensus 214 ~~l~~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~-----~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSE-----SEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHCHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCC-CcccHHHHHHcCCcHHHHHHHHhCC-----CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 55888888888887754 455666665 568899999988631 145567777889999874 6777788899999
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhh-hhhhhhccc-chhHHHHHHHhhccCCC--CchhhHHHHHHHHHHhccCC
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAE-VKSLRPKLM-TSKFIEVFANLVSSKSD--GIEVSYNAAGVLSHIASDGP 685 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niae-v~~l~~~l~-~~~~i~~~~~ll~~~~~--~~evsy~a~gilahl~~~~~ 685 (778)
++.+++.|.... +.+++++.++.|+|++- .++.+..++ ....+..+.++|.+..+ .++|..+|+|+|++|++-
T Consensus 288 I~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~-- 364 (458)
T 3nmz_A 288 VKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL-- 364 (458)
T ss_dssp HHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc--
Confidence 999999987654 67899999999999998 667888887 78899999999987643 357999999999999861
Q ss_pred CccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhch
Q psy17257 686 EAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGG 765 (778)
Q Consensus 686 ~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g 765 (778)
.+..+..|..+.+ +--+.|+..||+ ...+.+|--|+|||.|++..+ ......++++||
T Consensus 365 --~a~~~~~~~~i~~------------------~G~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~ 422 (458)
T 3nmz_A 365 --IATNEDHRQILRE------------------NNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARN-PKDQEALWDMGA 422 (458)
T ss_dssp --HTTCHHHHHHHHH------------------TTHHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHTH
T ss_pred --ccCCHHHHHHHHH------------------cccHHHHHHHHc-CCChHHHHHHHHHHHHHHcCC-HHHHHHHHHCCC
Confidence 0001122333322 223467788887 467889999999999999865 456889999999
Q ss_pred HHHHHHHhhcc
Q psy17257 766 IELLQNLLDNE 776 (778)
Q Consensus 766 ~~~l~~~~~~~ 776 (778)
++.|.++...+
T Consensus 423 I~~Lv~LL~s~ 433 (458)
T 3nmz_A 423 VSMLKNLIHSK 433 (458)
T ss_dssp HHHHHTTTTCS
T ss_pred HHHHHHHHhCC
Confidence 99999987654
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.97 E-value=3.2e-10 Score=123.98 Aligned_cols=177 Identities=21% Similarity=0.200 Sum_probs=116.2
Q ss_pred eEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccc
Q psy17257 89 KSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDF 168 (778)
Q Consensus 89 ~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~ 168 (778)
+.++++++.++.-. .. ....++.|+|++| +++......+...+++|+.|+|++|.+. .++
T Consensus 21 ~~l~c~~~~l~~iP-~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~---~i~-------------- 80 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLN---FIS-------------- 80 (361)
T ss_dssp TEEECCSSCCSSCC-SS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCC---EEC--------------
T ss_pred CEEEeCCCCcCccC-cc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCC---ccC--------------
Confidence 46677766654311 01 1356888999987 5764222222225788999999988764 111
Q ss_pred cccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hH
Q psy17257 169 MMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SF 246 (778)
Q Consensus 169 l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~ 246 (778)
...+..+++|+.|++++|.+ +.-. ...+..+++|+.|+|++|.++ .+ ..
T Consensus 81 -----------------------~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~L~~N~i~----~~~~~~ 131 (361)
T 2xot_A 81 -----------------------SEAFVPVPNLRYLDLSSNHL-HTLD-EFLFSDLQALEVLLLYNNHIV----VVDRNA 131 (361)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSCCC----EECTTT
T ss_pred -----------------------hhhccCCCCCCEEECCCCcC-CcCC-HHHhCCCcCCCEEECCCCccc----EECHHH
Confidence 01126788999999999988 5422 225678899999999999987 44 34
Q ss_pred HHhccccccEEEcCCCCCcchhhHhh---cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCC--CCEEeecCC
Q psy17257 247 LAEFKDTLVSLVLFNVSIVKDNLDHI---CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH--LVSLDISGT 321 (778)
Q Consensus 247 L~~l~~~L~~L~L~~~~~~~~~~~~l---~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~--L~~LDLSgn 321 (778)
+..+ ++|+.|+|++|.++.-....+ ..+++|++||+++|++ + ..|.. .+..++. |+.|++++|
T Consensus 132 ~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~------~l~~~----~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 132 FEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-K------KLPLT----DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp TTTC-TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-C------CCCHH----HHHHSCHHHHTTEECCSS
T ss_pred hCCc-ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-C------ccCHH----HhhhccHhhcceEEecCC
Confidence 6777 789999999998875222223 5789999999999987 2 11211 2456676 488999999
Q ss_pred CCCCC
Q psy17257 322 NLAGR 326 (778)
Q Consensus 322 ~l~~~ 326 (778)
.+.-+
T Consensus 200 ~~~C~ 204 (361)
T 2xot_A 200 PLECD 204 (361)
T ss_dssp CEECC
T ss_pred CccCC
Confidence 87543
No 126
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.97 E-value=1.6e-08 Score=116.26 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANL 659 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~l 659 (778)
.+..-+..+|.++++..++....+++.|+++.+++.|.. .+..++...+..|||++.. .+.+..+.....+..+..+
T Consensus 266 ~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 266 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 344446667888999999888899999999999999984 5788999999999999865 4466677788889999999
Q ss_pred hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhH
Q psy17257 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739 (778)
Q Consensus 660 l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~ 739 (778)
|.+ ...+|...||++|++|+... ...+..+.+ .--+.|+..+|. ...+.+|.
T Consensus 344 L~~--~~~~i~~~a~~aL~nl~~~~-------~~~~~~v~~------------------~g~i~~Lv~lL~-~~~~~v~~ 395 (529)
T 3tpo_A 344 LTN--PKTNIQKEATWTMSNITAGR-------QDQIQQVVN------------------HGLVPFLVGVLS-KADFKTQK 395 (529)
T ss_dssp TTC--SSHHHHHHHHHHHHHHHTSC-------HHHHHHHHH------------------TTHHHHHHHHHH-SSCHHHHH
T ss_pred HcC--CCHHHHHHHHHHHHHHhccc-------HHHHHHHHh------------------cCcHHHHHHHhc-CCCHHHHH
Confidence 998 46789999999999998732 122222222 123457777887 56789999
Q ss_pred HHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 740 WSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 740 wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.|+|||.|+|+.-...++..|++.||++.|.++...++
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 99999999998766688999999999999999887653
No 127
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.96 E-value=1.6e-08 Score=115.71 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHh
Q psy17257 581 DILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANL 659 (778)
Q Consensus 581 ~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~l 659 (778)
.+...+..+++++++..++..+.+++.|+++.+++.|.. .+..+++..++.+||++.. .+.+..+++...+..+..+
T Consensus 247 ~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 455667778999999999988899999999999999984 5788999999999999765 3456667778888999999
Q ss_pred hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhH
Q psy17257 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739 (778)
Q Consensus 660 l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~ 739 (778)
|.+ ...+|...||++|++|+... ...+..+.+ ..-+.|+..+|+ ...+.+|.
T Consensus 325 L~~--~~~~v~~~A~~aL~nl~a~~-------~~~~~~v~~------------------~g~i~~Lv~lL~-~~~~~v~~ 376 (510)
T 3ul1_B 325 LTN--PKTNIQKEATWTMSNITAGR-------QDQIQQVVN------------------HGLVPFLVGVLS-KADFKTQK 376 (510)
T ss_dssp TTC--SSHHHHHHHHHHHHHHTTSC-------HHHHHHHHH------------------TTHHHHHHHHHH-SSCHHHHH
T ss_pred hcC--CCHHHHHHHHHHHHHHHcCc-------HHHHHHHHh------------------cCCHHHHHHHHc-CCCHHHHH
Confidence 988 46789999999999998732 122222222 223467777777 45689999
Q ss_pred HHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 740 WSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 740 wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.|+|||.|++......++..|++.|+++.|.++...++
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 99999999999777789999999999999999887653
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.94 E-value=3.7e-10 Score=127.49 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=76.7
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
++|++|++++|.+ ++ ++ .+..+++|++|++++|.++ .++.. . .+|++|++++|.+.+ .+ .++++++|
T Consensus 131 ~~L~~L~L~~n~l-~~--lp-~~~~l~~L~~L~l~~N~l~----~lp~~--~-~~L~~L~L~~n~l~~-l~-~~~~l~~L 197 (454)
T 1jl5_A 131 PLLEYLGVSNNQL-EK--LP-ELQNSSFLKIIDVDNNSLK----KLPDL--P-PSLEFIAAGNNQLEE-LP-ELQNLPFL 197 (454)
T ss_dssp TTCCEEECCSSCC-SS--CC-CCTTCTTCCEEECCSSCCS----CCCCC--C-TTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CCCCEEECcCCCC-CC--Cc-ccCCCCCCCEEECCCCcCc----ccCCC--c-ccccEEECcCCcCCc-Cc-cccCCCCC
Confidence 6899999999988 54 34 4778999999999999987 44321 2 589999999998875 33 58899999
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
++|++++|.+ + + + | ...++|+.|++++|.+.
T Consensus 198 ~~L~l~~N~l-~--~-l---~--------~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 198 TAIYADNNSL-K--K-L---P--------DLPLSLESIVAGNNILE 228 (454)
T ss_dssp CEEECCSSCC-S--S-C---C--------CCCTTCCEEECCSSCCS
T ss_pred CEEECCCCcC-C--c-C---C--------CCcCcccEEECcCCcCC
Confidence 9999999987 2 1 1 1 22368999999999875
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.94 E-value=2.4e-09 Score=120.91 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=58.1
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|++|++++|.+ ++ ++ ...++|++|++++|.++ .++.+..+ ++|+.|++++|.+.+ ++. ..
T Consensus 150 ~~l~~L~~L~l~~N~l-~~--lp---~~~~~L~~L~L~~n~l~----~l~~~~~l-~~L~~L~l~~N~l~~-l~~---~~ 214 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSL-KK--LP---DLPPSLEFIAAGNNQLE----ELPELQNL-PFLTAIYADNNSLKK-LPD---LP 214 (454)
T ss_dssp TTCTTCCEEECCSSCC-SC--CC---CCCTTCCEEECCSSCCS----SCCCCTTC-TTCCEEECCSSCCSS-CCC---CC
T ss_pred CCCCCCCEEECCCCcC-cc--cC---CCcccccEEECcCCcCC----cCccccCC-CCCCEEECCCCcCCc-CCC---Cc
Confidence 6667777777777766 32 11 22356777777777766 44455566 567777777766553 111 12
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
++|++|++++|.+ + .+ |. +..+++|+.|++++|.+.
T Consensus 215 ~~L~~L~l~~n~l-~---~l---p~------~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 215 LSLESIVAGNNIL-E---EL---PE------LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TTCCEEECCSSCC-S---SC---CC------CTTCTTCCEEECCSSCCS
T ss_pred CcccEEECcCCcC-C---cc---cc------cCCCCCCCEEECCCCcCC
Confidence 4666666666655 1 11 11 345666666666666654
No 130
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.94 E-value=6.4e-09 Score=117.42 Aligned_cols=234 Identities=21% Similarity=0.284 Sum_probs=169.5
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.+|..|...+..++. -++..+..+.+.|.+..++++++.. ...+.+-+..+|+|+.-.++++...+++.||++
T Consensus 16 ~~~q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 16 EKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSP-----NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp THHHHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 7789999988888764 3455566778889999999988732 123446688889999988899999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhc--------cCC------CCchhhHHHHHHH
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS--------SKS------DGIEVSYNAAGVL 677 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~--------~~~------~~~evsy~a~gil 677 (778)
.+++.|...+ +++++..+.+.|+|++...+.|..++. .-+..+.++|. +.. ...+|-.+|+++|
T Consensus 90 ~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL 167 (457)
T 1xm9_A 90 EAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167 (457)
T ss_dssp HHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence 9999998553 788999999999999999889998988 99999999993 221 2467888999999
Q ss_pred HHHhccCCCccccccccHH--HHHHHHHHHhcc------CCCCCc-------cceecc----------------------
Q psy17257 678 SHIASDGPEAWTIRYPARE--KVLAKMVEAIER------WPIDSE-------RNINYR---------------------- 720 (778)
Q Consensus 678 ahl~~~~~~~w~~~~~~r~--~~~~~~~~~i~~------w~~~~~-------~~v~yr---------------------- 720 (778)
++|+++ ++... .-++ .+++.|+..+.. ++.... +++.||
T Consensus 168 ~nLs~~-~~~~~---~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T 1xm9_A 168 RNLSSA-DAGRQ---TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHTTS-HHHHH---HHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHccC-HHHHH---HHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccccc
Confidence 999885 33221 1111 233444433332 222110 111221
Q ss_pred ----------------------------------------cchhhHHhhccCCCchhhHHHHHHHHHhcccCCc--ccc-
Q psy17257 721 ----------------------------------------SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE--KYC- 757 (778)
Q Consensus 721 ----------------------------------------sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~--~y~- 757 (778)
--.|+..||.....|.++--|+||+.|+|+.++. .+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~ 323 (457)
T 1xm9_A 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHH
T ss_pred ccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHH
Confidence 1245678888888899999999999999996533 122
Q ss_pred chhh-hhchHHHHHHHhhccC
Q psy17257 758 QVVE-AEGGIELLQNLLDNEN 777 (778)
Q Consensus 758 ~~~~-~e~g~~~l~~~~~~~~ 777 (778)
+..+ ++||++.|-++..+++
T Consensus 324 ~~~v~~~~~l~~Lv~LL~~~~ 344 (457)
T 1xm9_A 324 QLIGLKEKGLPQIARLLQSGN 344 (457)
T ss_dssp HHHHTTSCCHHHHHHHTTCSC
T ss_pred HHHHHHcCCchHHHHHHhCCC
Confidence 4444 6899999999887754
No 131
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.94 E-value=6.4e-09 Score=122.60 Aligned_cols=323 Identities=15% Similarity=0.178 Sum_probs=224.2
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccc
Q psy17257 425 ALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDV 504 (778)
Q Consensus 425 ~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~ 504 (778)
++..++..++ ..+..++..+..+|.+|++..... ........++..|+..+... ++..+++++..+|.+...-.+
T Consensus 15 ~i~~Lv~lL~--~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~- 89 (644)
T 2z6h_A 15 AIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHRE- 89 (644)
T ss_dssp THHHHHHHHT--CSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHH-
T ss_pred hHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChh-
Confidence 4455555454 235678999999999999875310 00111236788888888653 356788888777765332211
Q ss_pred cccHHHHHH-----HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhcc
Q psy17257 505 QFDYDRLVR-----ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRC 579 (778)
Q Consensus 505 ~f~~~~~~~-----~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~ 579 (778)
+...+.+ .+++.+.. . | +.++..|+..+..++..- .+.+..+.+.|.+..++++++...
T Consensus 90 --~~~~i~~~g~i~~Lv~lL~~-~-~------~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~----- 153 (644)
T 2z6h_A 90 --GLLAIFKSGGIPALVKMLGS-P-V------DSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN----- 153 (644)
T ss_dssp --HHHHHHTTTHHHHHHHHTTC-S-S------HHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-----
T ss_pred --hHHHHHHcCCHHHHHHHHhC-C-C------HHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-----
Confidence 2333322 33333332 2 4 779999998888877653 345556667788898888886531
Q ss_pred chhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHh
Q psy17257 580 DDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANL 659 (778)
Q Consensus 580 d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~l 659 (778)
..+...+..+|+|++-.+++++..+++.+|++.+++.|+... ...++....++|.|++...+.|..++....+..+.++
T Consensus 154 ~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 154 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 233445567899999888999999999999999999999874 5668889999999999988999999999999999999
Q ss_pred hccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCc-------------------cceecc
Q psy17257 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE-------------------RNINYR 720 (778)
Q Consensus 660 l~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~-------------------~~v~yr 720 (778)
+.+. ..++..+|+++|++++...+. +. ....++..|+..+..-+.... .++...
T Consensus 233 l~~~--~~~~~~~a~~~L~nL~~~~~~-~~----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 233 LTDP--SQRLVQNCLWTLRNLSDAATK-QE----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp TTCS--CHHHHHHHHHHHHHHGGGCTT-CC----SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhcC--CHHHHHHHHHHHHHHhhcchh-hh----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 9884 688999999999999876432 21 122444555444442211111 112233
Q ss_pred cchhhHHhhccCC-CchhhHHHHHHHHHhcccCCc-cc-cchhhhhchHHHHHHHhhcc
Q psy17257 721 SFEPIIQLLRVYH-TPECQHWSVWALANLTKVYPE-KY-CQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 721 sf~p~~~ll~~~~-~~~~q~wa~wa~~~~~~~~~~-~y-~~~~~~e~g~~~l~~~~~~~ 776 (778)
-..++..+|.... .+.++..|+||+.|+++.+|+ .+ -..+++.||++.|-.+..++
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~ 364 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc
Confidence 4567788887654 489999999999999987765 33 34488899999999888765
No 132
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.93 E-value=1.3e-09 Score=111.28 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 198 APKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 198 l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
.++|+.|++++|.+ +... +..+..+++|++|++++|.+. .++ .+..+ ++|+.|+|++|.++.-....+..+
T Consensus 39 ~~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~L~~N~l~----~i~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQI-TKLE-PGVFDSLINLKELYLGSNQLG----ALPVGVFDSL-TQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCEEEcCCCcc-CccC-HHHhhCccCCcEEECCCCCCC----CcChhhcccC-CCcCEEECCCCcCCccChhHhCcc
Confidence 37899999999998 5432 236778999999999999997 443 36677 799999999999886445557889
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR 355 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~ 355 (778)
++|++|++++|.+ + .+ |. .+..+++|+.||+++|.+.+ +.. ..+ ...+
T Consensus 112 ~~L~~L~Ls~N~l-~---~l---p~-----~~~~l~~L~~L~L~~N~l~~--~~~-----------------~~~-~~l~ 159 (229)
T 3e6j_A 112 VHLKELFMCCNKL-T---EL---PR-----GIERLTHLTHLALDQNQLKS--IPH-----------------GAF-DRLS 159 (229)
T ss_dssp TTCCEEECCSSCC-C---SC---CT-----TGGGCTTCSEEECCSSCCCC--CCT-----------------TTT-TTCT
T ss_pred hhhCeEeccCCcc-c---cc---Cc-----ccccCCCCCEEECCCCcCCc--cCH-----------------HHH-hCCC
Confidence 9999999999998 2 12 22 25789999999999998863 211 123 2568
Q ss_pred cceEeeccccCCC
Q psy17257 356 PLEFLGLYGTKHG 368 (778)
Q Consensus 356 ~L~~L~L~~t~~~ 368 (778)
+|+.|.|.++++.
T Consensus 160 ~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 160 SLTHAYLFGNPWD 172 (229)
T ss_dssp TCCEEECTTSCBC
T ss_pred CCCEEEeeCCCcc
Confidence 8999999999854
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.93 E-value=4.3e-09 Score=123.13 Aligned_cols=213 Identities=15% Similarity=0.073 Sum_probs=118.5
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
++|+.|+|++|.++. +.. ..++|+.|+|++| +++. ++ ...++|++|++++|.+..-.... +.
T Consensus 61 ~~L~~L~L~~N~l~~--lp~-~l~~L~~L~Ls~N-~l~~--lp---~~l~~L~~L~Ls~N~l~~l~~~l---------~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA-LPPELRTLEVSGN-QLTS--LP---VLPPGLLELSIFSNPLTHLPALP---------SG 122 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC-CCTTCCEEEECSC-CCSC--CC---CCCTTCCEEEECSCCCCCCCCCC---------TT
T ss_pred CCCcEEEecCCCCCC--CCC-cCCCCCEEEcCCC-cCCc--CC---CCCCCCCEEECcCCcCCCCCCCC---------CC
Confidence 467888888777652 111 2467888888887 4542 11 24577888888877654210000 00
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
...+.. +.+... .+-..+++|++|++++|.+ +. +-..+++|+.|++++|.++ .++
T Consensus 123 L~~L~L-------~~N~l~--------~lp~~l~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N~l~----~l~ 177 (622)
T 3g06_A 123 LCKLWI-------FGNQLT--------SLPVLPPGLQELSVSDNQL-AS-----LPALPSELCKLWAYNNQLT----SLP 177 (622)
T ss_dssp CCEEEC-------CSSCCS--------CCCCCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSSCCS----CCC
T ss_pred cCEEEC-------CCCCCC--------cCCCCCCCCCEEECcCCcC-CC-----cCCccCCCCEEECCCCCCC----CCc
Confidence 000000 000000 0112347788888888777 43 1124567888888888777 454
Q ss_pred HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
..+ ++|+.|++++|.+++ ++. .+++|+.|++++|.+ + .+ ...+++|+.|++++|.+.+
T Consensus 178 --~~~-~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l-~---~l-----------~~~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 178 --MLP-SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRL-T---SL-----------PALPSGLKELIVSGNRLTS 235 (622)
T ss_dssp --CCC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-S---SC-----------CCCCTTCCEEECCSSCCSC
T ss_pred --ccC-CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcc-c---cc-----------CCCCCCCCEEEccCCccCc
Confidence 234 678888888887764 111 246788888888876 2 11 1235889999999998875
Q ss_pred CccccccCC-CCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 326 RGVAEFSSK-GSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 326 ~~~~~~~~~-~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
-+....... .... ....+.||. ..++|+.|.|.+|.+.
T Consensus 236 lp~~l~~L~~L~Ls-~N~L~~lp~----~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 236 LPVLPSELKELMVS-GNRLTSLPM----LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCCCCTTCCEEECC-SSCCSCCCC----CCTTCCEEECCSSCCC
T ss_pred CCCCCCcCcEEECC-CCCCCcCCc----ccccCcEEeCCCCCCC
Confidence 220000000 0000 012234554 3467888998888755
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=2.9e-09 Score=103.77 Aligned_cols=112 Identities=20% Similarity=0.261 Sum_probs=86.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-H-HHhccccccEEEcCCCCCcc-hhhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-F-LAEFKDTLVSLVLFNVSIVK-DNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~-L~~l~~~L~~L~L~~~~~~~-~~~~~l 272 (778)
...++|+.|++++|.+ ++- ..+..+++|+.|++++|.++ .++ . +..+ ++|+.|++++|.+.. .....+
T Consensus 39 ~~~~~L~~L~Ls~N~l-~~~---~~l~~l~~L~~L~Ls~N~l~----~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~l 109 (176)
T 1a9n_A 39 ATLDQFDAIDFSDNEI-RKL---DGFPLLRRLKTLLVNNNRIC----RIGEGLDQAL-PDLTELILTNNSLVELGDLDPL 109 (176)
T ss_dssp GGTTCCSEEECCSSCC-CEE---CCCCCCSSCCEEECCSSCCC----EECSCHHHHC-TTCCEEECCSCCCCCGGGGGGG
T ss_pred hcCCCCCEEECCCCCC-Ccc---cccccCCCCCEEECCCCccc----ccCcchhhcC-CCCCEEECCCCcCCcchhhHhh
Confidence 3446999999999998 552 36778999999999999998 554 3 4778 799999999999864 122368
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
..+++|++|++++|++ +. . |. .-...+..+|+|+.||+++|...
T Consensus 110 ~~l~~L~~L~l~~N~i-~~---~---~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPV-TN---K---KH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGCTTCCEEECCSSGG-GG---S---TT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEEecCCCC-CC---c---Hh-HHHHHHHHCCccceeCCCcCCHH
Confidence 8999999999999987 21 1 21 11124788999999999999764
No 135
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.92 E-value=5.7e-10 Score=130.23 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=132.5
Q ss_pred CCceeEEEeeCCccCHHH---HHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcc
Q psy17257 85 ITHMKSVKLRNAEVSDSG---MQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGE 161 (778)
Q Consensus 85 ~~~L~~L~L~~~~isd~~---l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e 161 (778)
.++|+.++++++.+...+ .......+|+.|+++.+. +... ..-...+++|+.+++.++.......... ..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~--~~-- 442 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSV--FL-- 442 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEE--CSCCTTCTTCCEEECTTSEEESTTSSCT--TT--
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccc-cccc--cccccccccccchhhhhccccccccccc--cc--
Confidence 368999999988764322 123345789999998874 3211 1111346789999998876542111000 00
Q ss_pred ccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCc
Q psy17257 162 KQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDN 241 (778)
Q Consensus 162 ~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~ 241 (778)
..+....+... .+ .+..........+++|+.|++++|.. .....+..+..+++|+.||||+|.++
T Consensus 443 ~l~~l~~l~ls-------~n----~l~~~~~~~~~~~~~L~~L~Ls~N~~-~~~~~~~~~~~l~~L~~L~Ls~N~L~--- 507 (635)
T 4g8a_A 443 SLRNLIYLDIS-------HT----HTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDLSQCQLE--- 507 (635)
T ss_dssp TCTTCCEEECT-------TS----CCEECCTTTTTTCTTCCEEECTTCEE-GGGEECSCCTTCTTCCEEECTTSCCC---
T ss_pred ccccccccccc-------cc----ccccccccccccchhhhhhhhhhccc-ccccCchhhhhccccCEEECCCCccC---
Confidence 00000000000 00 01000112337789999999999986 33233446778999999999999998
Q ss_pred ccc--hHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcC-CCCCEEee
Q psy17257 242 KDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL-PHLVSLDI 318 (778)
Q Consensus 242 ~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~l-p~L~~LDL 318 (778)
.+ ..+.++ ++|++|+|++|+++.-.+..+..+++|++||+++|++ + +. .|. .+..+ ++|+.||+
T Consensus 508 -~l~~~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~--~~---~~~-----~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 508 -QLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-M--TS---KKQ-----ELQHFPSSLAFLNL 574 (635)
T ss_dssp -EECTTTTTTC-TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC-C--BC---CSS-----CTTCCCTTCCEEEC
T ss_pred -CcChHHHcCC-CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC-C--CC---CHH-----HHHhhhCcCCEEEe
Confidence 44 347788 7999999999999876667788999999999999998 2 11 111 24556 58999999
Q ss_pred cCCCCCCC
Q psy17257 319 SGTNLAGR 326 (778)
Q Consensus 319 Sgn~l~~~ 326 (778)
++|++.-+
T Consensus 575 ~~Np~~C~ 582 (635)
T 4g8a_A 575 TQNDFACT 582 (635)
T ss_dssp TTCCBCCS
T ss_pred eCCCCccc
Confidence 99998654
No 136
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.91 E-value=1.1e-09 Score=106.45 Aligned_cols=104 Identities=12% Similarity=0.195 Sum_probs=81.0
Q ss_pred CceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhc---CCCCceeecCCCCCCCccccchhhhhcc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMS---SDQLYSLSLGPHCSMFPDCLESEVVVGE 161 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~---~~~L~~L~Ls~c~~~~~~~~~~~~~l~e 161 (778)
.+|+.|++++|.|+|.++..+. +++|++|+|++|..||+.++..++.. +++|++|+|++|..+++.++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------- 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------- 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence 5799999999999999998775 78999999999988999999888752 468999999999877654421
Q ss_pred ccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHH--HHHhccCCCCC
Q psy17257 162 KQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSIC--TQLYRDMPHLT 228 (778)
Q Consensus 162 ~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l--~~~~~~lp~L~ 228 (778)
.+.++++|++|++++|.-+++.++ ..+-..+|+++
T Consensus 134 --------------------------------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 134 --------------------------------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp --------------------------------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred --------------------------------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 226788999999999876577543 33445677765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.91 E-value=7.3e-10 Score=108.11 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=100.8
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.|++++|.+ +. ++.+....|+|+.||+++|.++ .+..+..+ ++|+.|++++|.++.-....+..+
T Consensus 16 ~~~~~L~~L~l~~n~l-~~--i~~~~~~~~~L~~L~Ls~N~l~----~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-PV--IENLGATLDQFDAIDFSDNEIR----KLDGFPLL-RRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCC-CS--CCCGGGGTTCCSEEECCSSCCC----EECCCCCC-SSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCcCCceEEEeeCCCC-ch--hHHhhhcCCCCCEEECCCCCCC----cccccccC-CCCCEEECCCCcccccCcchhhcC
Confidence 6788999999999998 53 2334444569999999999998 66677788 799999999999875333345789
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccc----ccc
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPG----LAS 351 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~----l~~ 351 (778)
++|++|++++|.+ ++ + |. +. .+..+++|+.|++++|.+... |. .+
T Consensus 88 ~~L~~L~L~~N~i-~~---~---~~--~~-~l~~l~~L~~L~l~~N~i~~~--------------------~~~~~~~~- 136 (176)
T 1a9n_A 88 PDLTELILTNNSL-VE---L---GD--LD-PLASLKSLTYLCILRNPVTNK--------------------KHYRLYVI- 136 (176)
T ss_dssp TTCCEEECCSCCC-CC---G---GG--GG-GGGGCTTCCEEECCSSGGGGS--------------------TTHHHHHH-
T ss_pred CCCCEEECCCCcC-Cc---c---hh--hH-hhhcCCCCCEEEecCCCCCCc--------------------HhHHHHHH-
Confidence 9999999999987 21 2 21 11 267899999999999987521 22 24
Q ss_pred ccCccceEeeccccC
Q psy17257 352 RVDRPLEFLGLYGTK 366 (778)
Q Consensus 352 ~~~~~L~~L~L~~t~ 366 (778)
...++|++|++.++.
T Consensus 137 ~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCSEETTEECC
T ss_pred HHCCccceeCCCcCC
Confidence 367889999988776
No 138
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.91 E-value=3.3e-09 Score=107.55 Aligned_cols=132 Identities=17% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhcCCC
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~ 276 (778)
++|+.|++++|.+ +... ...+..+++|+.|++++|.++ .+ ..+..+ ++|++|+|++|.++.-....+..++
T Consensus 32 ~~l~~L~l~~n~i-~~i~-~~~~~~l~~L~~L~Ls~N~i~----~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTI-KVIP-PGAFSPYKKLRRIDLSNNQIS----ELAPDAFQGL-RSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCC-CEEC-TTSSTTCTTCCEEECCSSCCC----EECTTTTTTC-SSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCcC-CCcC-HhHhhCCCCCCEEECCCCcCC----CcCHHHhhCC-cCCCEEECCCCcCCccCHhHccCCC
Confidence 6899999999998 5422 225678999999999999998 44 457788 7999999999998854344467899
Q ss_pred CccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCcc
Q psy17257 277 LLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRP 356 (778)
Q Consensus 277 ~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~ 356 (778)
+|++|++++|.+ +. . .|. .+..+++|+.||+++|.+.+-. . ... ...++
T Consensus 105 ~L~~L~L~~N~l-~~--~---~~~-----~~~~l~~L~~L~L~~N~l~~~~--~-----------------~~~-~~l~~ 153 (220)
T 2v9t_B 105 SLQLLLLNANKI-NC--L---RVD-----AFQDLHNLNLLSLYDNKLQTIA--K-----------------GTF-SPLRA 153 (220)
T ss_dssp TCCEEECCSSCC-CC--C---CTT-----TTTTCTTCCEEECCSSCCSCCC--T-----------------TTT-TTCTT
T ss_pred CCCEEECCCCCC-CE--e---CHH-----HcCCCCCCCEEECCCCcCCEEC--H-----------------HHH-hCCCC
Confidence 999999999998 21 1 111 3678999999999999986421 1 122 25688
Q ss_pred ceEeeccccCCC
Q psy17257 357 LEFLGLYGTKHG 368 (778)
Q Consensus 357 L~~L~L~~t~~~ 368 (778)
|+.|.|.++++.
T Consensus 154 L~~L~L~~N~~~ 165 (220)
T 2v9t_B 154 IQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEeCCCCcC
Confidence 999999999853
No 139
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.90 E-value=2.2e-09 Score=117.33 Aligned_cols=155 Identities=21% Similarity=0.250 Sum_probs=111.8
Q ss_pred ccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCcccc
Q psy17257 111 VQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYK 190 (778)
Q Consensus 111 L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~ 190 (778)
-+.++++++ +++. ++. ...++++.|+|++|.+. .+.
T Consensus 20 ~~~l~c~~~-~l~~--iP~--~~~~~l~~L~Ls~N~l~---~l~------------------------------------ 55 (361)
T 2xot_A 20 SNILSCSKQ-QLPN--VPQ--SLPSYTALLDLSHNNLS---RLR------------------------------------ 55 (361)
T ss_dssp TTEEECCSS-CCSS--CCS--SCCTTCSEEECCSSCCC---EEC------------------------------------
T ss_pred CCEEEeCCC-CcCc--cCc--cCCCCCCEEECCCCCCC---ccC------------------------------------
Confidence 467888887 4543 110 12357899999999764 111
Q ss_pred hhhhhh-cCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcch
Q psy17257 191 QRGYIL-KAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 191 ~~~~~~-~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~ 267 (778)
..... .+++|+.|++++|.+ +... ...+..+++|++|||++|.++ .+. .+..+ ++|+.|+|++|.+...
T Consensus 56 -~~~~~~~l~~L~~L~L~~N~i-~~i~-~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l-~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 56 -AEWTPTRLTNLHSLLLSHNHL-NFIS-SEAFVPVPNLRYLDLSSNHLH----TLDEFLFSDL-QALEVLLLYNNHIVVV 127 (361)
T ss_dssp -TTSSSSCCTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEECCSSCCC----EECTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred -hhhhhhcccccCEEECCCCcC-CccC-hhhccCCCCCCEEECCCCcCC----cCCHHHhCCC-cCCCEEECCCCcccEE
Confidence 01113 789999999999998 5432 235778999999999999997 443 36778 7999999999999876
Q ss_pred hhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 268 NLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+..+.++++|++|++++|.+ +. .|...+.. ...+++|+.||+++|.+.+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l-~~------l~~~~~~~-~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQI-SR------FPVELIKD-GNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-CS------CCGGGTC-----CTTCCEEECCSSCCCC
T ss_pred CHHHhCCcccCCEEECCCCcC-Ce------eCHHHhcC-cccCCcCCEEECCCCCCCc
Confidence 667789999999999999998 21 12222111 2679999999999999864
No 140
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.90 E-value=1.9e-09 Score=124.64 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred CceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhcccccc
Q psy17257 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRA 165 (778)
Q Consensus 86 ~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~ 165 (778)
.+|+.|+|++|.++.-. . ..++|+.|++++| .++. ++.+ ..+|+.|+|++|.+. .++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~-~l~~L~~L~Ls~N-~l~~--ip~l---~~~L~~L~Ls~N~l~---~lp----------- 136 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--E-LPASLEYLDACDN-RLST--LPEL---PASLKHLDVDNNQLT---MLP----------- 136 (571)
T ss_dssp TTCSEEECCSSCCSCCC--C-CCTTCCEEECCSS-CCSC--CCCC---CTTCCEEECCSSCCS---CCC-----------
T ss_pred CCCCEEECcCCCCcccc--c-ccCCCCEEEccCC-CCCC--cchh---hcCCCEEECCCCcCC---CCC-----------
Confidence 57999999999987322 1 2578999999998 5764 3222 239999999999764 122
Q ss_pred ccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch
Q psy17257 166 DDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245 (778)
Q Consensus 166 ~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~ 245 (778)
. .+++|+.|++++|.+ +. ++ ..+++|+.|++++|.++ .++
T Consensus 137 ---------------------------~---~l~~L~~L~Ls~N~l-~~--lp---~~l~~L~~L~Ls~N~L~----~lp 176 (571)
T 3cvr_A 137 ---------------------------E---LPALLEYINADNNQL-TM--LP---ELPTSLEVLSVRNNQLT----FLP 176 (571)
T ss_dssp ---------------------------C---CCTTCCEEECCSSCC-SC--CC---CCCTTCCEEECCSSCCS----CCC
T ss_pred ---------------------------C---cCccccEEeCCCCcc-Cc--CC---CcCCCcCEEECCCCCCC----Ccc
Confidence 1 468999999999998 54 22 26789999999999998 455
Q ss_pred HHHhccccccEEEcCCCCCcchhhHhhcCCCCc-------cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEee
Q psy17257 246 FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL-------RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318 (778)
Q Consensus 246 ~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L-------~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDL 318 (778)
.+. ++|+.|+|++|+++ .++. +.. +| ++|++++|.+ + ..|. .+..+++|+.||+
T Consensus 177 ~l~---~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l-~------~lp~-----~l~~l~~L~~L~L 237 (571)
T 3cvr_A 177 ELP---ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI-T------HIPE-----NILSLDPTCTIIL 237 (571)
T ss_dssp CCC---TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC-C------CCCG-----GGGGSCTTEEEEC
T ss_pred hhh---CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc-e------ecCH-----HHhcCCCCCEEEe
Confidence 432 69999999999987 3333 433 66 9999999988 2 1232 2456999999999
Q ss_pred cCCCCCC
Q psy17257 319 SGTNLAG 325 (778)
Q Consensus 319 Sgn~l~~ 325 (778)
++|.+.+
T Consensus 238 ~~N~l~~ 244 (571)
T 3cvr_A 238 EDNPLSS 244 (571)
T ss_dssp CSSSCCH
T ss_pred eCCcCCC
Confidence 9999875
No 141
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.88 E-value=1.6e-08 Score=121.72 Aligned_cols=325 Identities=14% Similarity=0.161 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
.++..++..+. ..+..||..+..+|.+|++..... ........++..|+..+.... +..+++++..+|.+...-
T Consensus 150 g~ip~Lv~lL~--~~d~~vr~~A~~~L~~L~~~~~~~-~~i~~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~-- 223 (780)
T 2z6g_A 150 RAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHH-- 223 (780)
T ss_dssp HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTSHHHH-HHHTTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTS--
T ss_pred CCHHHHHHHHC--CCCHHHHHHHHHHHHHHhCCChhH-HHHHhccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCC--
Confidence 44455555454 235678999999999998753210 011112367888888886553 667888888888763221
Q ss_pred ccccHHHHH-----HHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q psy17257 504 VQFDYDRLV-----RILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQR 578 (778)
Q Consensus 504 ~~f~~~~~~-----~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~ 578 (778)
+-+...+. ..+++.+... | +.++.-|+..+..++.. +++.+..+.+.|.+..++++++..
T Consensus 224 -~~~~~~i~~~g~I~~Lv~lL~~~--~------~~v~~~A~~aL~nLa~~-~~~~~~~v~~~g~v~~Lv~lL~~~----- 288 (780)
T 2z6g_A 224 -REGLLAIFKSGGIPALVNMLGSP--V------DSVLFHAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKT----- 288 (780)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCS--C------HHHHHHHHHHHHHHHHH-STTHHHHHHHTTHHHHHHHGGGCC-----
T ss_pred -chhHHHHHHcCCHHHHHHHHcCC--C------HHHHHHHHHHHHHHhCC-ChhhHHHHHHcCCHHHHHHHHhcC-----
Confidence 11122222 2333333322 3 77888888888777654 344555666778888888888641
Q ss_pred cchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHH
Q psy17257 579 CDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFAN 658 (778)
Q Consensus 579 ~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ 658 (778)
...+.+.+..+++++.-.+++.+..+++.+|++.+++.|+... ....+....++|.|++...+.|..++....+..+..
T Consensus 289 ~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~ 367 (780)
T 2z6g_A 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence 1344566777888888778899999999999999999999763 556778899999999988888998989999999999
Q ss_pred hhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCcc-------------------ceec
Q psy17257 659 LVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSER-------------------NINY 719 (778)
Q Consensus 659 ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~-------------------~v~y 719 (778)
+|.+. ..++...|+++|++|+...+. +. .++.++..|+..+..-+..-++ ++..
T Consensus 368 lL~~~--~~~~~~~a~~~L~~L~~~~~~-~~----~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 368 HLTDP--SQRLVQNCLWTLRNLSDAATK-QE----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp GTTCS--CHHHHHHHHHHHHHHHTTCTT-CS----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHcCC--chHHHHHHHHHHHHHhccchh-hh----hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 99874 678999999999999875432 22 2244555555544431111111 1123
Q ss_pred ccchhhHHhhccCCC-chhhHHHHHHHHHhcccCCc--cccchhhhhchHHHHHHHhhccC
Q psy17257 720 RSFEPIIQLLRVYHT-PECQHWSVWALANLTKVYPE--KYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 720 rsf~p~~~ll~~~~~-~~~q~wa~wa~~~~~~~~~~--~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.-..++..+|..... +.++..|+|||.+++..+++ .+...++++||++.|-.+..+++
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 346678888887554 49999999999999987776 23457888999999988876653
No 142
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.88 E-value=8.5e-08 Score=114.03 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=208.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC-Cc----ccccc---HHH
Q psy17257 439 ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI-PQ----DVQFD---YDR 510 (778)
Q Consensus 439 ~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i-l~----~~~f~---~~~ 510 (778)
+..+|..+..++.+++.+.....+- +...+..|..-+. ..+..++......||+-.. .. ..+|+ ...
T Consensus 303 ~~~~q~~A~~al~~aa~~~~~R~~I---~~~gv~~L~~Ll~--s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 303 DELQQRVACECLIAASSKKDKAKAL---CEQGVDILKRLYH--SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHTT---HHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHH---HHcCcHHHHHHHc--CCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 4567888888888876663211111 1122334443332 2233444455677777532 11 24453 467
Q ss_pred HHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhhccchhHHHHHHH
Q psy17257 511 LVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQRCDDILEVAWSA 589 (778)
Q Consensus 511 ~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~ 589 (778)
+++...+++.+...| ..+++.|+.-++.+..+ ++.++.+. +.|++..++++++.. . ..+..-+..+
T Consensus 378 Lv~~l~~lL~~~~~d------~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~--d---~~i~~~al~~ 444 (810)
T 3now_A 378 LAEACRRFLIKPGKD------KDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGG--N---QSCLYGVVTT 444 (810)
T ss_dssp HHHHHHHHHHCSSCC------SSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTT--C---GGGHHHHHHH
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCC--C---hHHHHHHHHH
Confidence 788888888875335 67889999999988765 78888888 679999999999741 1 2333447788
Q ss_pred HHhccccc--------------------------------HHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhh
Q psy17257 590 MWNVTDET--------------------------------AINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNV 637 (778)
Q Consensus 590 lwn~tde~--------------------------------p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~ni 637 (778)
+-|+|-.+ -+.|+..++.|+++.|++.|+. .+++++.+....|+||
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 88977532 1237899999999999999986 4789999999999999
Q ss_pred hhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCC--ccccccccHHHHHHHHHHHhccCCCCCcc
Q psy17257 638 AEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE--AWTIRYPAREKVLAKMVEAIERWPIDSER 715 (778)
Q Consensus 638 aev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~--~w~~~~~~r~~~~~~~~~~i~~w~~~~~~ 715 (778)
|...+.|..++....++.+..+|.+. ..++--+||..|++|+..+.. +|. . +..
T Consensus 523 A~d~~~r~~Vv~~Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~~p~~~~~-----~----~~~------------- 578 (810)
T 3now_A 523 CGLKELRGKVVQEGGVKALLRMALEG--TEKGKRHATQALARIGITINPEVSFS-----G----QRS------------- 578 (810)
T ss_dssp HTSHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHTT-----T----HHH-------------
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHccC--CHHHHHHHHHHHHHHhcCCChhhhhc-----c----hhh-------------
Confidence 99989999999999999999999984 467889999999999874321 010 0 001
Q ss_pred ceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 716 NINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 716 ~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
+.--.|+..||.....+..+.=|+||+.|+++. ++.++..++++||++.|.++..+++
T Consensus 579 ---~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~ 636 (810)
T 3now_A 579 ---LDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDH 636 (810)
T ss_dssp ---HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCC
T ss_pred ---hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 113478888887433444556799999999996 5788999999999999999987764
No 143
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.88 E-value=5.5e-08 Score=115.65 Aligned_cols=347 Identities=16% Similarity=0.141 Sum_probs=237.6
Q ss_pred EEeCCCCHHHHHHHHHhcCC----hHHHHHHHHHHHHHhccccccC-Ch---HHHHHHHHHHHHhhccccchhHHHHHHH
Q psy17257 379 RVAGDCNEAQLLIAAKAYID----RPEMLQQVLNDLYHIFRYDTCV-DI---EHALVVVLEALDTHLTERHIQISGSANL 450 (778)
Q Consensus 379 ~v~g~~~~~qil~al~~y~~----R~~~~~~aL~~L~~l~~~~~~~-~~---~e~l~lV~~am~~h~~~~~vq~~gsacL 450 (778)
.....+..++++.++..+.. .++....+...|+++....... .+ ..++..+++-++. .+..+|..+...|
T Consensus 368 ~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s--~d~~i~~~al~~L 445 (810)
T 3now_A 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG--GNQSCLYGVVTTF 445 (810)
T ss_dssp CSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC--CChHHHHHHHHHH
Confidence 34444556778888887742 2455667777777775422211 11 3456666666654 3568999999999
Q ss_pred HHHHhcCCCC-C------------C------Ch----HHH---H-----HHHHHHHHHHhcCCCchhhhhhHHhhhccCc
Q psy17257 451 FYIVKMKDRP-V------------L------SS----LTK---R-----HIITTILNGMHMHLEDDTMMRNGCLTLCQFK 499 (778)
Q Consensus 451 ~~L~~~~~~~-~------------~------~~----~~~---~-----~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~ 499 (778)
-||++....+ + . +. ..+ + .+|..|..-+ ..+ +..+++++..+|.|-.
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~-s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTE-SHNSQELIARVLNAVC 523 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCC-CHHHHHHHHHHHHHHH
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCC-CHHHHHHHHHHHHHHc
Confidence 9999954211 0 0 00 011 1 2344444444 344 4678888888887775
Q ss_pred CCccccccHHHHHH-----HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHH
Q psy17257 500 IPQDVQFDYDRLVR-----ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDR 573 (778)
Q Consensus 500 il~~~~f~~~~~~~-----~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~ 573 (778)
- +.. ++..+.+ .++..+... + ...++.|...++.++.-.+++...... ..+.++.+++++..-
T Consensus 524 ~--d~~-~r~~Vv~~Gaip~Lv~LL~s~--~------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~ 592 (810)
T 3now_A 524 G--LKE-LRGKVVQEGGVKALLRMALEG--T------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD 592 (810)
T ss_dssp T--SHH-HHHHHHHTTHHHHHHHHHHSS--C------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT
T ss_pred C--CHH-HHHHHHHCCCHHHHHHHHccC--C------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC
Confidence 3 222 4555443 444555432 3 667889988888777665665432111 235778888777421
Q ss_pred HhhhccchhHH-HHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccc-hh
Q psy17257 574 IEKQRCDDILE-VAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMT-SK 651 (778)
Q Consensus 574 ~~~~~~d~~l~-~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~-~~ 651 (778)
.+.... -++.+|.|++.-+++++..+++.||++.+++.|.. +++.+++....+++|++--.+.+.+++. .+
T Consensus 593 -----~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g 665 (810)
T 3now_A 593 -----CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLYLTRAAAQCLCNLVMSEDVIKMFEGNND 665 (810)
T ss_dssp -----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSS
T ss_pred -----CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCChHHHHHHHhccC
Confidence 111222 36778999999889999999999999999999984 4677999999999999998888888874 57
Q ss_pred HHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhcc
Q psy17257 652 FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRV 731 (778)
Q Consensus 652 ~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~ 731 (778)
-+..+..|+++ .+.++.--|||.||+|++. .+.....+.+ . .....|+..||.
T Consensus 666 ~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~-------s~~~~~~ii~-------~----------~g~I~~Lv~LL~- 718 (810)
T 3now_A 666 RVKFLALLCED--EDEETATACAGALAIITSV-------SVKCCEKILA-------I----------ASWLDILHTLIA- 718 (810)
T ss_dssp HHHHHHHGGGC--SSHHHHHHHHHHHHHHHHH-------CHHHHHHHHT-------S----------TTHHHHHHHHHT-
T ss_pred cHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC-------CHHHHHHHHH-------H----------cCCHHHHHHHHC-
Confidence 89999999998 5789999999999999872 1112222221 0 234468999998
Q ss_pred CCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhc
Q psy17257 732 YHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 732 ~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~ 775 (778)
...+++|+=|+||+.|+++.+ +.+...+++.||++.|.++...
T Consensus 719 s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~ 761 (810)
T 3now_A 719 NPSPAVQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQL 761 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhC
Confidence 578999999999999999854 5689999999999999998643
No 144
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.86 E-value=5.8e-08 Score=99.10 Aligned_cols=189 Identities=20% Similarity=0.208 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|...+..++.. +++....+.+.|.+..++++++.. ...+.+.+..+|+|++...++++..+++.|+++
T Consensus 58 ~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 131 (252)
T 4hxt_A 58 SEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGPDEAIKAIVDAGGVE 131 (252)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 55667777777666553 456666677788888888888731 245667788999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|+. .+++++...++.|+|++.. .+.+..+.....+..+.++|.+ +.-+|...|+++|++++...
T Consensus 132 ~L~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~------ 201 (252)
T 4hxt_A 132 VLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGP------ 201 (252)
T ss_dssp HHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSB------
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCC------
Confidence 99999984 5688999999999999985 4455677888999999999997 46799999999999998731
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccc
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY 756 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y 756 (778)
...+..+.+ ..-..++..+++ ...|.++.-|+||+.+++...+..|
T Consensus 202 -~~~~~~l~~------------------~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 202 -TSAIKAIVD------------------AGGVEVLQKLLT-STDSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp -HHHHHHHHH------------------TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred -HHHHHHHHH------------------CCCHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCCCccc
Confidence 112222221 123467777777 4678999999999999999766544
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=5.6e-09 Score=114.03 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=83.8
Q ss_pred CCCccEEEecCCcccChhHHHHHhc-cCCCCCeEeccCc--cccCCcccc---hH-H--HhccccccEEEcCCCCCcchh
Q psy17257 198 APKLRRFSLIGHTLMSQSICTQLYR-DMPHLTHLNLSKC--MFLFDNKDL---SF-L--AEFKDTLVSLVLFNVSIVKDN 268 (778)
Q Consensus 198 l~~L~~L~Ls~~~l~s~~~l~~~~~-~lp~L~~LdLS~~--~i~~~~~~l---~~-L--~~l~~~L~~L~L~~~~~~~~~ 268 (778)
+++|++|++..|.+ +++++..+.. .+|+|++|+|+.+ ... +...+ .. + ..+ ++|++|.|.+|.+.+..
T Consensus 192 ~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 192 RPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp CTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHH
T ss_pred CCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccc-cchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHH
Confidence 78999999999998 7877775653 6999999999742 211 11112 22 1 134 79999999999987644
Q ss_pred hHhhc---CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCc
Q psy17257 269 LDHIC---SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRG 327 (778)
Q Consensus 269 ~~~l~---~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~ 327 (778)
...+. .+++|++||||.|.+ ++.|. ..+...+..+++|+.||+++|.+++.+
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L-~d~G~------~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVL-TDEGA------RLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCC-BHHHH------HHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHHHhCccCCCCCEEECCCCCC-ChHHH------HHHHhhcccCCcceEEECCCCcCCHHH
Confidence 44433 578999999999886 33221 223323467899999999999876443
No 146
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.84 E-value=6.3e-09 Score=121.36 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=38.7
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCC
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPL 277 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~ 277 (778)
++++|+|++|.+ +.-. +..+.++++|++|||++|.++ .++ .+.++ ++|++|+|++|++..-....+.++++
T Consensus 53 ~~~~LdLs~N~i-~~l~-~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHLG-SYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCC-CEEC-TTTTTTCTTCCEEECTTCCCC----EECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCCC-CCCC-HHHHhCCCCCCEEECCCCcCC----CcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 455555555554 3211 113444555555555555554 222 24444 45555555555544322333455555
Q ss_pred ccEEeccCCCC
Q psy17257 278 LRRLDISVSSD 288 (778)
Q Consensus 278 L~~LdLS~~~~ 288 (778)
|++||+++|.+
T Consensus 126 L~~L~Ls~N~l 136 (635)
T 4g8a_A 126 LQKLVAVETNL 136 (635)
T ss_dssp CCEEECTTSCC
T ss_pred CCEEECCCCcC
Confidence 55555555544
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.83 E-value=5.6e-09 Score=103.41 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=87.3
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
++|+.|++++|.+ +.......+..+++|++|++++|.++ +. ....+..+ ++|+.|+|++|++++..+..+.++++|
T Consensus 29 ~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~-~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT-GI-EPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCC-CB-CTTTTTTC-TTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCC-Cc-CHhHcCCc-ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 3889999999988 54322224678999999999999998 21 12357778 799999999999987666668889999
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
++||+++|.+ + +.. |. .+..+++|++||+++|.+..+
T Consensus 105 ~~L~L~~N~l-~--~~~---~~-----~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 105 KTLNLYDNQI-S--CVM---PG-----SFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSSCC-C--EEC---TT-----SSTTCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcC-C--eeC---HH-----HhhcCCCCCEEEeCCCCccCc
Confidence 9999999987 2 111 11 267899999999999998765
No 148
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.82 E-value=7.9e-09 Score=103.12 Aligned_cols=181 Identities=19% Similarity=0.293 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhh-
Q psy17257 561 GVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAE- 639 (778)
Q Consensus 561 ~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niae- 639 (778)
+....+..+++.. ...+..-+..+|.+++..+++....+++.||++.+++.|.. .+++++...+..|+|++.
T Consensus 12 ~~~~~l~~LL~s~-----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 12 SELPQMVQQLNSP-----DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASG 84 (210)
T ss_dssp -CHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHhcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcC
Confidence 3344555554322 13444567778999999999999999999999999999985 378899999999999994
Q ss_pred hhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceec
Q psy17257 640 VKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINY 719 (778)
Q Consensus 640 v~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~y 719 (778)
-.+.+..++....++.+.++|++. +.+|...|+++|++++.+.+ ..+..+. ..
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~-------~~~~~~~------------------~~ 137 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN-------EQIQAVI------------------DA 137 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCH-------HHHHHHH------------------HT
T ss_pred CcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCH-------HHHHHHH------------------Hc
Confidence 567778888899999999999984 68999999999999987421 1112221 12
Q ss_pred ccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 720 RSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 720 rsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
.-..++..+|.. ..+.++.+|+||+.++|..+ ......+.+.||++.|..+..+++
T Consensus 138 ~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~ 193 (210)
T 4db6_A 138 GALPALVQLLSS-PNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHEN 193 (210)
T ss_dssp THHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred CcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhCCC
Confidence 345677778774 47899999999999999964 456789999999999999987754
No 149
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.82 E-value=4.2e-08 Score=106.74 Aligned_cols=214 Identities=17% Similarity=0.238 Sum_probs=163.6
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccc-cHHHHHHHHhcCC
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDE-TAINCARFLNNGG 609 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde-~p~~c~~f~~~~g 609 (778)
+.+|+-|...+..++.. +.+.+..+. ..|.+..++++++.. ...+.+-+-.+|+|++.. .+.+-..+++.||
T Consensus 98 ~~~q~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~-----~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~ 171 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSE-----SEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171 (354)
T ss_dssp HHHHHHHHHHHHHHTSS-CHHHHHHHHHCHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCcHHHHHHHHCCC-----CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC
Confidence 56888888888887754 455666665 568899999988631 134556777889999874 5677778889999
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhh-hhhhhhccc-chhHHHHHHHhhccCCC--CchhhHHHHHHHHHHhccCC
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAE-VKSLRPKLM-TSKFIEVFANLVSSKSD--GIEVSYNAAGVLSHIASDGP 685 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niae-v~~l~~~l~-~~~~i~~~~~ll~~~~~--~~evsy~a~gilahl~~~~~ 685 (778)
++.+++.|.+.. +++++++.++.|+|++. .++.|..++ ....+..+.++|++..+ .++|..+|+|+|++|++.
T Consensus 172 Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~-- 248 (354)
T 3nmw_A 172 VKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL-- 248 (354)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh--
Confidence 999999987664 67899999999999998 667788887 78899999999987643 357999999999999861
Q ss_pred CccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhch
Q psy17257 686 EAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGG 765 (778)
Q Consensus 686 ~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g 765 (778)
.+..+..|..+.+ +--+.|+..||+ ...+.+|--|+|||.+++..+ ......++++||
T Consensus 249 --~a~~~~~~~~i~~------------------~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~ 306 (354)
T 3nmw_A 249 --IATNEDHRQILRE------------------NNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARN-PKDQEALWDMGA 306 (354)
T ss_dssp --HTTCHHHHHHHHT------------------TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTH
T ss_pred --ccCCHHHHHHHHH------------------cCCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCC
Confidence 0111223333322 223477888887 467889999999999999764 456788999999
Q ss_pred HHHHHHHhhcc
Q psy17257 766 IELLQNLLDNE 776 (778)
Q Consensus 766 ~~~l~~~~~~~ 776 (778)
++.|.++...+
T Consensus 307 i~~Lv~LL~s~ 317 (354)
T 3nmw_A 307 VSMLKNLIHSK 317 (354)
T ss_dssp HHHHHTTTTCS
T ss_pred HHHHHHHHhCC
Confidence 99999987654
No 150
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.81 E-value=3.5e-08 Score=113.56 Aligned_cols=235 Identities=22% Similarity=0.252 Sum_probs=166.8
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhccc-ccHHHHHHHHhcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTD-ETAINCARFLNNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~td-e~p~~c~~f~~~~g~ 610 (778)
+.+|..|...+..++.+ +.+.+..+.+.|.|..++++++.. ...+.+-+-.+|+|+.- +++++....++.||+
T Consensus 62 ~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~-----~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaI 135 (584)
T 3l6x_A 62 DAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHP-----KKEVHLGACGALKNISFGRDQDNKIAIKNCDGV 135 (584)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCS-----SHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCC-----CHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCH
Confidence 67888777777655543 677888888999999999988643 14455678889999986 368898999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhc---c-------------CCCCchhhHHHH
Q psy17257 611 ELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS---S-------------KSDGIEVSYNAA 674 (778)
Q Consensus 611 ~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~---~-------------~~~~~evsy~a~ 674 (778)
+.+++.|..-+ +.++++++.+.|-|++..++.+..++. .-+..+.++|. + .....+|-++|+
T Consensus 136 p~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa 213 (584)
T 3l6x_A 136 PALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTA 213 (584)
T ss_dssp HHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHH
Confidence 99999999753 678999999999999999999988884 57999999872 1 112468999999
Q ss_pred HHHHHHhccCCCccccccccH------HHHHHHHHHHhccCCCCCc---------cceecc-------------------
Q psy17257 675 GVLSHIASDGPEAWTIRYPAR------EKVLAKMVEAIERWPIDSE---------RNINYR------------------- 720 (778)
Q Consensus 675 gilahl~~~~~~~w~~~~~~r------~~~~~~~~~~i~~w~~~~~---------~~v~yr------------------- 720 (778)
|+|.+|++++++ .+..-| +.+++.+..++..-..+.. ++++|+
T Consensus 214 ~~L~NLs~~~~~---~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~ 290 (584)
T 3l6x_A 214 GCLRNVSSERSE---ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290 (584)
T ss_dssp HHHHHHTSSCHH---HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---------
T ss_pred HHHHHHhcCCHH---HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccc
Confidence 999999997542 011111 1122222222211111100 011111
Q ss_pred ------------------cchhhHHhhccCCCchhhHHHHHHHHHhcccCCc--cccc-hhhhhchHHHHHHHhhccC
Q psy17257 721 ------------------SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE--KYCQ-VVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 721 ------------------sf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~--~y~~-~~~~e~g~~~l~~~~~~~~ 777 (778)
..+|.+.||+....+.+|==|+|||+|+|.-+.. .+.+ .+.+|||++.|-+|..+++
T Consensus 291 ~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~ 368 (584)
T 3l6x_A 291 NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368 (584)
T ss_dssp -----CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC
T ss_pred ccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 1235678898888899999999999999985421 2333 5677999999999988764
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=2.5e-10 Score=113.69 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=87.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcc-hhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~-~~~~~l~~ 274 (778)
..+++|+.|++++|.+ +. ++..+..+++|+.|++++|.++ .++.+..+ ++|+.|++++|.+++ ..+..+..
T Consensus 67 ~~l~~L~~L~l~~n~l-~~--l~~~~~~~~~L~~L~L~~N~l~----~l~~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 67 SGMENLRILSLGRNLI-KK--IENLDAVADTLEELWISYNQIA----SLSGIEKL-VNLRVLYMSNNKITNWGEIDKLAA 138 (198)
T ss_dssp HHHTTCCEEEEEEEEE-CS--CSSHHHHHHHCSEEEEEEEECC----CHHHHHHH-HHSSEEEESEEECCCHHHHHHHTT
T ss_pred ccCCCCCEEECCCCCc-cc--ccchhhcCCcCCEEECcCCcCC----cCCccccC-CCCCEEECCCCcCCchhHHHHHhc
Confidence 5678999999999988 43 3335566789999999999998 67788888 799999999999875 23357889
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCc---hhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNP---NDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p---~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
+++|++|++++|++ ++ .. +.. .......+..+|+|+.|| ++.+.
T Consensus 139 l~~L~~L~l~~N~l-~~--~~-~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 139 LDKLEDLLLAGNPL-YN--DY-KENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTCSEEEECSCHH-HH--HH-HTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCCEEEecCCcc-cc--cc-ccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99999999999986 21 11 000 122334578899999998 66554
No 152
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.80 E-value=1.1e-07 Score=107.38 Aligned_cols=327 Identities=12% Similarity=0.096 Sum_probs=212.0
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccH
Q psy17257 429 VLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDY 508 (778)
Q Consensus 429 V~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~ 508 (778)
++..++.. +..+|..|..+|.+|+.+...... .-.....|..|+..+.. + +..+++++..+|.|-.. +-+-+.
T Consensus 7 lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~s-~-~~~~~~~A~~aL~nLa~--~~~~~k 79 (457)
T 1xm9_A 7 AVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQ-QVYQLGGICKLVDLLRS-P-NQNVQQAAAGALRNLVF--RSTTNK 79 (457)
T ss_dssp HHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHH-HHHHTTHHHHHHHHTTS-S-CHHHHHHHHHHHHHHHS--SCHHHH
T ss_pred HHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHH-HHHHcCCHHHHHHHHcC-C-CHHHHHHHHHHHHHHhc--CCHHHH
Confidence 34444433 457899999999999865421111 11234556677777763 3 56788888777766543 223445
Q ss_pred HHHHH-----HHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHH--------HHh
Q psy17257 509 DRLVR-----ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKD--------RIE 575 (778)
Q Consensus 509 ~~~~~-----~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~--------~~~ 575 (778)
..+.+ .+++.+.... | +.+++.|+..+..++.. ++-+..+.+ |.+..+++++.. ...
T Consensus 80 ~~i~~~G~i~~Lv~lL~~~~-~------~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 80 LETRRQNGIREAVSLLRRTG-N------AEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCC-C------HHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC-----
T ss_pred HHHHHcCCHHHHHHHHhhCC-C------HHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccc
Confidence 55543 5666665333 4 77999999888888876 344555667 999999999842 111
Q ss_pred h--h-ccchhHHHHHHHHHhcccccHHHHHHHHhc-CChHHHHHHHhhC----CCcHHHHHHHHhhhhhhhh-----h--
Q psy17257 576 K--Q-RCDDILEVAWSAMWNVTDETAINCARFLNN-GGMELFLNCLQYF----PEKDELLRNMMGLLGNVAE-----V-- 640 (778)
Q Consensus 576 ~--~-~~d~~l~~~~s~lwn~tde~p~~c~~f~~~-~g~~~~~~~l~~f----~~~~~l~~~~lgll~niae-----v-- 640 (778)
. . ....+++-+..+|+|+... |++...+++. |+++.+++.|..- ..+..++++.++.|.|++- +
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~ 228 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred hhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcc
Confidence 0 0 1234556788899999987 8887888887 9999999999852 1234467778888888751 1
Q ss_pred --------------------------------------------hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHH
Q psy17257 641 --------------------------------------------KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGV 676 (778)
Q Consensus 641 --------------------------------------------~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gi 676 (778)
.+-...+++.+.++.+..+|.++. .-++--.|||.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~a 307 (457)
T 1xm9_A 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGA 307 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 001123566788999999998763 46888899999
Q ss_pred HHHHhccCCCcccc-------c-cc-----------cHHHHHHHHHHHhccCCCC--CccceecccchhhHHhhccCCC-
Q psy17257 677 LSHIASDGPEAWTI-------R-YP-----------AREKVLAKMVEAIERWPID--SERNINYRSFEPIIQLLRVYHT- 734 (778)
Q Consensus 677 lahl~~~~~~~w~~-------~-~~-----------~r~~~~~~~~~~i~~w~~~--~~~~v~yrsf~p~~~ll~~~~~- 734 (778)
|++|+. |...|+. . .. ..+++...-..++..--.. -...|.-.-..|+..+|...+.
T Consensus 308 L~nl~~-~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~ 386 (457)
T 1xm9_A 308 LQNLTA-SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGN 386 (457)
T ss_dssp HHHHTT-CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSC
T ss_pred HHHhcc-CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCC
Confidence 999987 3333320 0 00 1122222222222221111 1223333357899999997654
Q ss_pred ----chhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhcc
Q psy17257 735 ----PECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 735 ----~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
+.++.=|+||+.++++.+| .++..+++.||++.|.+|..++
T Consensus 387 ~~~~~~v~~~~l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~ 431 (457)
T 1xm9_A 387 TSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSS 431 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCC
Confidence 3566667789999998765 5999999999999999999886
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=2.1e-08 Score=97.60 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=87.1
Q ss_pred CCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 198 APKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 198 l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
.++|+.|++++|.+ +... ...+..+++|++|++++|.++ .+. .+..+ ++|+.|++++|.++......+..+
T Consensus 27 ~~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKL-QSLP-HGVFDKLTQLTKLSLSQNQIQ----SLPDGVFDKL-TKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCC-CCCC-TTTTTTCTTCSEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCcc-cEeC-HHHhcCcccccEEECCCCcce----EeChhHccCC-CccCEEECCCCCccccCHHHhhCC
Confidence 46899999999998 5422 235678999999999999998 443 25677 799999999999886555557889
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
++|++|++++|.+ +. + |. ..+..+++|+.|++++|.+.++
T Consensus 100 ~~L~~L~l~~N~l-~~---~---~~----~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 100 TQLKELALDTNQL-KS---V---PD----GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCCEEECCSSCC-SC---C---CT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCEEECcCCcc-eE---e---CH----HHhcCCcccCEEEecCCCeecc
Confidence 9999999999987 21 1 11 1257799999999999998754
No 154
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.75 E-value=1.4e-07 Score=113.53 Aligned_cols=306 Identities=18% Similarity=0.200 Sum_probs=203.3
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccc
Q psy17257 425 ALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDV 504 (778)
Q Consensus 425 ~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~ 504 (778)
.+..++..++... ...++..+.++|.+|+..... ...-....++..|+..+... +..+.+++..+|.+..--...
T Consensus 319 ~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~--~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 319 GPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTH--HHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHH--HHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchh
Confidence 4455555555442 234555677788888754211 11111223455666655432 456778876665443211111
Q ss_pred cccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHH
Q psy17257 505 QFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILE 584 (778)
Q Consensus 505 ~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~ 584 (778)
......+...++..+.. . | +.+++.|+.+++.++.. +++.+..+.+.+.+..+++.+...-.. +.+.+
T Consensus 394 ~~~~~~~i~~Lv~lL~~-~-d------~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~---~~v~~ 461 (780)
T 2z6g_A 394 QEGMEGLLGTLVQLLGS-D-D------INVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR---EDITE 461 (780)
T ss_dssp CSCCHHHHHHHHHHTTC-S-C------HHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTC---HHHHH
T ss_pred hhhhhhHHHHHHHHHcC-C-C------HHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCH---HHHHH
Confidence 11223445555555432 2 4 77889999999888775 556666777788899999988764221 25667
Q ss_pred HHHHHHHhcccccHH---HHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhc
Q psy17257 585 VAWSAMWNVTDETAI---NCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS 661 (778)
Q Consensus 585 ~~~s~lwn~tde~p~---~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~ 661 (778)
.+..+|+|++..+++ +.+.+++.+|++.+++.|..- .+.+++..+.+.|+|++...+-+..+.....+..+.++|.
T Consensus 462 ~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 462 PAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHH
Confidence 788889999976654 346888999999999999753 3558999999999999987777777778888999999997
Q ss_pred cCCC--------------------CchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceeccc
Q psy17257 662 SKSD--------------------GIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRS 721 (778)
Q Consensus 662 ~~~~--------------------~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrs 721 (778)
+... .-+|...|+|+|+.++.+ ...|.. ++...-
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--------~~~~~~------------------l~~~~~ 594 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--------IHNRIV------------------IRGLNT 594 (780)
T ss_dssp HHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--------HHHHHH------------------HHHTCC
T ss_pred hcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--------hhhHHH------------------HHHCCc
Confidence 6210 123455566666666431 011111 122344
Q ss_pred chhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 722 FEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 722 f~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
..|+..+|.. ..+.+|.-|++|+.+++.. +.++.++.++||++.|..+..+++
T Consensus 595 i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~ 647 (780)
T 2z6g_A 595 IPLFVQLLYS-PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRN 647 (780)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCC
Confidence 6788899984 6789999999999999853 678999999999999999998765
No 155
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.75 E-value=2.4e-07 Score=103.20 Aligned_cols=304 Identities=14% Similarity=0.147 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 424 e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
..+..+++.++.. .+..+|..+..+|.+++....... ..-....++..|+..+.. + +..+++.+..+|.+..- +
T Consensus 64 ~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~~-~-~~~vr~~a~~~L~~l~~--~ 137 (450)
T 2jdq_A 64 GVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQT-RIVIQAGAVPIFIELLSS-E-FEDVQEQAVWALGNIAG--D 137 (450)
T ss_dssp THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHH-HHHHHTTHHHHHHHHTTC-S-CHHHHHHHHHHHHHHHT--T
T ss_pred CcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHH-HHHHhCCCHHHHHHHHcC-C-CHHHHHHHHHHHHHHcc--C
Confidence 4566677766654 356799999999999987531100 001124567777777754 3 55677777777665322 1
Q ss_pred ccccHHHH-----HHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhc
Q psy17257 504 VQFDYDRL-----VRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQR 578 (778)
Q Consensus 504 ~~f~~~~~-----~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~ 578 (778)
.+.....+ ...++..+.... + ..+++.|+..+..++..-++.....+ -.+.+..++++++..
T Consensus 138 ~~~~~~~~~~~~~i~~L~~~l~~~~-~------~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~----- 204 (450)
T 2jdq_A 138 STMCRDYVLDCNILPPLLQLFSKQN-R------LTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVS----- 204 (450)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTSCC-C------HHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCC-----
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCC-C------HHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccC-----
Confidence 12122222 234444443211 3 77999999999888755322211111 146677777766421
Q ss_pred cchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh-hhhcccchhHHHHHH
Q psy17257 579 CDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFA 657 (778)
Q Consensus 579 ~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~-l~~~l~~~~~i~~~~ 657 (778)
...+.+-+..++.++++..++....+++.++++.+++.|. ..+++++...++.|+|++.-.+ .+..++....+..+.
T Consensus 205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 282 (450)
T 2jdq_A 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282 (450)
T ss_dssp CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence 1345566777889999988888899999999999999997 3578899999999999997643 344466678899999
Q ss_pred HhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchh
Q psy17257 658 NLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPEC 737 (778)
Q Consensus 658 ~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~ 737 (778)
++|++ +.-+|...|+++|++++... ...+..+.+ ..-..+++.+|.. ..|.+
T Consensus 283 ~ll~~--~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~------------------~~~l~~L~~~l~~-~~~~v 334 (450)
T 2jdq_A 283 HLLSS--PKESIKKEACWTISNITAGN-------RAQIQTVID------------------ANIFPALISILQT-AEFRT 334 (450)
T ss_dssp HHTTC--SSHHHHHHHHHHHHHHTTSC-------HHHHHHHHH------------------TTHHHHHHHHHHH-SCHHH
T ss_pred HHHcC--CCHHHHHHHHHHHHHHHcCC-------HHHHHHHHH------------------CCCHHHHHHHHhc-CCHHH
Confidence 99988 46789999999999998621 111222221 1224567777774 56899
Q ss_pred hHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhcc
Q psy17257 738 QHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 738 q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
+..|+||+.+++.......+..++++|+++.|-++..++
T Consensus 335 ~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 373 (450)
T 2jdq_A 335 RKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373 (450)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 999999999999864445677788999999999888765
No 156
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.75 E-value=1.7e-07 Score=93.28 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=147.0
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+..+..++.. +++.+..+.+.|.+..++++++.. ...+.+-+..+|+|++...++....+++.||++
T Consensus 26 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (210)
T 4db6_A 26 QQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (210)
T ss_dssp HHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHH
Confidence 78999999988888644 677777778889999999888643 245567788899999988999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|+.- +++++....+.|+|++.. .+.+..++....+..+.++|++ +..+|...|+++|++++..++
T Consensus 100 ~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~----- 170 (210)
T 4db6_A 100 ALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGN----- 170 (210)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCH-----
T ss_pred HHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCc-----
Confidence 999999864 688999999999999964 4455667788899999999998 478999999999999987432
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK 750 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~ 750 (778)
..+..+. .-.-..++..++. ...+.++..|+||+.++++
T Consensus 171 --~~~~~~~------------------~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 --EQKQAVK------------------EAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp --HHHHHHH------------------HTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHH------------------HCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 2222221 1223456777777 5788999999999999986
No 157
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=1e-08 Score=118.81 Aligned_cols=105 Identities=22% Similarity=0.266 Sum_probs=76.8
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
.|+.|++++|.+ ++ ++. +..+++|+.||+++|.++ .++ .+..+ ++|+.|+|++|.+++ ++ .++++++|
T Consensus 442 ~L~~L~Ls~n~l-~~--lp~-~~~l~~L~~L~Ls~N~l~----~lp~~~~~l-~~L~~L~Ls~N~l~~-lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDL-TV--LCH-LEQLLLVTHLDLSHNRLR----ALPPALAAL-RCLEVLQASDNALEN-VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCC-SS--CCC-GGGGTTCCEEECCSSCCC----CCCGGGGGC-TTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred CceEEEecCCCC-CC--CcC-ccccccCcEeecCccccc----ccchhhhcC-CCCCEEECCCCCCCC-Cc-ccCCCCCC
Confidence 578888888887 44 333 677888888888888887 453 57777 688888888888775 34 78888888
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
++|++++|.+ +. . ..|. .+..+++|+.||+++|.+.+
T Consensus 511 ~~L~Ls~N~l-~~---~-~~p~-----~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 511 QELLLCNNRL-QQ---S-AAIQ-----PLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CEEECCSSCC-CS---S-STTG-----GGGGCTTCCEEECTTSGGGG
T ss_pred cEEECCCCCC-CC---C-CCcH-----HHhcCCCCCEEEecCCcCCC
Confidence 8888888877 21 1 1022 36778888888888888764
No 158
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.71 E-value=9.3e-08 Score=98.05 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+..+..++.. +++.+..+.+.|.+..++++++.. ...+.+.+..+|+|+++..+.....+++.||++
T Consensus 68 ~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 141 (252)
T 4db8_A 68 EQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALP 141 (252)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHH
Confidence 55667777777776654 566667777788888888888652 145667788899999999888779999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|.. .+++++...++.|+|++.. .+.+..++....+..+.++|.+ +..+|...|+++|++++...
T Consensus 142 ~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~------ 211 (252)
T 4db8_A 142 ALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGG------ 211 (252)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSC------
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCC------
Confidence 99999975 4788999999999999974 4566667778899999999998 47899999999999998632
Q ss_pred ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcc
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK 750 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~ 750 (778)
+..+..+.+ ..-..++..++. ...|.++..|+|||.++|+
T Consensus 212 -~~~~~~~~~------------------~g~i~~L~~ll~-~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 212 -NEQKQAVKE------------------AGALEKLEQLQS-HENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp -HHHHHHHHH------------------TTHHHHHHTTTT-CSSSHHHHTHHHHHHTTC-
T ss_pred -HHHHHHHHH------------------CCcHHHHHHHhC-CCCHHHHHHHHHHHHHHhc
Confidence 122222222 123466777776 4578999999999999986
No 159
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.71 E-value=1.8e-07 Score=107.28 Aligned_cols=231 Identities=19% Similarity=0.181 Sum_probs=163.4
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|...+..++.. +++....+.+.|.+..++++++.. ...+.+.+..+|+|+...+|.....+++.++++
T Consensus 145 ~~v~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~ 218 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASG-TSAQTKVVVDADAVPLFIQLLYTG-----SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 218 (530)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHC-----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH
Confidence 55777777777776654 456666677788899999988752 244557788889999988888888899999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhh-hhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVK-SLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~-~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.+++.|.. .+.++++.++..|+|++... ...........+..+..+|.+ .+.+|...|+++|+.|+...++...
T Consensus 219 ~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~L~~~~~~~~~- 293 (530)
T 1wa5_B 219 PILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACWAISYLSDGPQEAIQ- 293 (530)
T ss_dssp HHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHHSSCHHHHH-
T ss_pred HHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCHHHHH-
Confidence 99999987 57889999999999999765 333445557789999999987 4679999999999999874322110
Q ss_pred ccccHHHHHHHHHHHhcc---------------CCCCC----ccceecccchhhHHhhccCCCchhhHHHHHHHHHhccc
Q psy17257 691 RYPAREKVLAKMVEAIER---------------WPIDS----ERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKV 751 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~---------------w~~~~----~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~ 751 (778)
......++..|+..+.. --... ...+...-..++..+|... .+.++.-|+|||.+++..
T Consensus 294 -~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 294 -AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG 371 (530)
T ss_dssp -HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred -HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 00001222333333321 00000 0112233445677777754 689999999999999986
Q ss_pred CCccccchhhhhchHHHHHHHhhcc
Q psy17257 752 YPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 752 ~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
++ ..+..++++|+++.|-.+..++
T Consensus 372 ~~-~~~~~~~~~~~l~~L~~lL~~~ 395 (530)
T 1wa5_B 372 NT-EQIQAVIDANLIPPLVKLLEVA 395 (530)
T ss_dssp CH-HHHHHHHHTTCHHHHHHHHHHS
T ss_pred CH-HHHHHHHHCCCHHHHHHHHhcC
Confidence 54 5566778899999988877654
No 160
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.69 E-value=6.8e-09 Score=112.83 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=78.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccC-ccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSK-CMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~-~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l 272 (778)
..+++|+.|++++|.+ +... ........++..|++++ +.+. .++ .+..+...++.|.|++|++.. ++..+
T Consensus 101 ~~l~~L~~L~l~~n~l-~~~~-~~~~~~~~~l~~l~l~~~~~i~----~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~ 173 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGI-KHLP-DVHKIHSLQKVLLDIQDNINIH----TIERNSFVGLSFESVILWLNKNGIQE-IHNSA 173 (350)
T ss_dssp CCCTTCCEEEEEEECC-SSCC-CCTTCCBSSCEEEEEESCTTCC----EECTTSSTTSBSSCEEEECCSSCCCE-ECTTS
T ss_pred hhcccccccccccccc-ccCC-chhhcccchhhhhhhccccccc----cccccchhhcchhhhhhccccccccC-CChhh
Confidence 7889999999999988 4321 11334566788899876 4454 332 234443578999999999864 45556
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
+...+|+.|++++++.++ .+ |. ..+..+++|+.||+|+|++..
T Consensus 174 f~~~~L~~l~l~~~n~l~---~i---~~----~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLE---EL---PN----DVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp STTEEEEEEECTTCTTCC---CC---CT----TTTTTEECCSEEECTTSCCCC
T ss_pred ccccchhHHhhccCCccc---CC---CH----HHhccCcccchhhcCCCCcCc
Confidence 677889999998765432 12 21 135789999999999998763
No 161
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=97.92 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCC
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~ 276 (778)
++|+.|++++|.+ +. ++..+..+++|+.||+++|.++ .+. .+..+ ++|++|+|++|.++...+..+..++
T Consensus 31 ~~l~~L~L~~n~i-~~--ip~~~~~l~~L~~L~Ls~N~i~----~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TL--VPKELSNYKHLTLIDLSNNRIS----TLSNQSFSNM-TQLLTLILSYNRLRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEECCSSCC-CS--CCGGGGGCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred CCCCEEECCCCcC-ch--hHHHhhcccCCCEEECCCCcCC----EeCHhHccCC-CCCCEEECCCCccCEeCHHHhCCCC
Confidence 6899999999998 53 2247788999999999999998 443 47788 7999999999999876666788999
Q ss_pred CccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 277 LLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 277 ~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
+|++|++++|.+ + .+ +.. .+..+++|+.|++++|.+..+
T Consensus 103 ~L~~L~L~~N~l-~---~~-~~~------~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 103 SLRLLSLHGNDI-S---VV-PEG------AFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCC-C---BC-CTT------TTTTCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCCC-C---ee-Chh------hhhcCccccEEEeCCCCeecC
Confidence 999999999998 2 11 111 267899999999999998644
No 162
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.68 E-value=1.3e-08 Score=121.64 Aligned_cols=83 Identities=20% Similarity=0.158 Sum_probs=43.4
Q ss_pred cCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 197 KAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 197 ~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
.+++|++|+|++|.+ + .++..+..+++|+.|||++|.++ .++ .+..+ ++|+.|+|++|.++ .++..++.+
T Consensus 245 ~l~~L~~L~Ls~N~l-~--~lp~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l-~~L~~L~L~~N~l~-~lp~~~~~l 315 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSL-T--ELPAEIKNLSNLRVLDLSHNRLT----SLPAELGSC-FQLKYFYFFDNMVT-TLPWEFGNL 315 (727)
T ss_dssp GCCSCSCCBCTTSCC-S--CCCGGGGGGTTCCEEECTTSCCS----SCCSSGGGG-TTCSEEECCSSCCC-CCCSSTTSC
T ss_pred CCCCCCEEEeeCCcC-c--ccChhhhCCCCCCEEeCcCCcCC----ccChhhcCC-CCCCEEECCCCCCC-ccChhhhcC
Confidence 455555666665555 3 12223455555666666655554 332 34455 45556666555554 334445555
Q ss_pred CCccEEeccCCCC
Q psy17257 276 PLLRRLDISVSSD 288 (778)
Q Consensus 276 ~~L~~LdLS~~~~ 288 (778)
++|++|+|++|.+
T Consensus 316 ~~L~~L~L~~N~l 328 (727)
T 4b8c_D 316 CNLQFLGVEGNPL 328 (727)
T ss_dssp TTCCCEECTTSCC
T ss_pred CCccEEeCCCCcc
Confidence 5566666655554
No 163
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.65 E-value=6.3e-08 Score=95.80 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=95.5
Q ss_pred cEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch---HHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 202 RRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS---FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 202 ~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~---~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
++++++++.+ +. ++.. -.++|+.|++++|.++ .+. .+..+ ++|++|+|++|.+++..+..+.++++|
T Consensus 11 ~~l~~s~~~l-~~--ip~~--~~~~l~~L~l~~n~i~----~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGL-KE--IPRD--IPLHTTELLLNDNELG----RISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCC-SS--CCSC--CCTTCSEEECCSCCCC----SBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCc-Cc--CccC--CCCCCCEEECCCCcCC----ccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 7899999988 43 1111 1348999999999997 443 27788 799999999999987667789999999
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccce
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLE 358 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~ 358 (778)
++|++++|.+ +. .. +. .+..+++|+.||+++|.+.+ .. |..+ ...++|+
T Consensus 81 ~~L~Ls~N~l-~~--~~---~~-----~~~~l~~L~~L~L~~N~l~~--~~-----------------~~~~-~~l~~L~ 129 (192)
T 1w8a_A 81 QELQLGENKI-KE--IS---NK-----MFLGLHQLKTLNLYDNQISC--VM-----------------PGSF-EHLNSLT 129 (192)
T ss_dssp CEEECCSCCC-CE--EC---SS-----SSTTCTTCCEEECCSSCCCE--EC-----------------TTSS-TTCTTCC
T ss_pred CEEECCCCcC-Cc--cC---HH-----HhcCCCCCCEEECCCCcCCe--eC-----------------HHHh-hcCCCCC
Confidence 9999999998 21 11 11 25789999999999999863 21 1233 2568899
Q ss_pred EeeccccCCC
Q psy17257 359 FLGLYGTKHG 368 (778)
Q Consensus 359 ~L~L~~t~~~ 368 (778)
+|.|.++++.
T Consensus 130 ~L~L~~N~l~ 139 (192)
T 1w8a_A 130 SLNLASNPFN 139 (192)
T ss_dssp EEECTTCCBC
T ss_pred EEEeCCCCcc
Confidence 9999999854
No 164
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.65 E-value=3.6e-08 Score=114.28 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=78.7
Q ss_pred hhcCCCccEEE-ecCCcccCh--------hHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCc
Q psy17257 195 ILKAPKLRRFS-LIGHTLMSQ--------SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 195 ~~~l~~L~~L~-Ls~~~l~s~--------~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~ 265 (778)
++.+++|+.|+ ++.+.+ .+ ..+..+ ....|+.|++++|.++ .++.+..+ ++|+.|+|++|.++
T Consensus 405 l~~l~~L~~L~~l~~n~~-~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~----~lp~~~~l-~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYL-DDLRSKFLLENSVLKM--EYADVRVLHLAHKDLT----VLCHLEQL-LLVTHLDLSHNRLR 476 (567)
T ss_dssp HHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCS----SCCCGGGG-TTCCEEECCSSCCC
T ss_pred HHHHHhcccCcchhhccc-chhhhhhhhccccccc--CccCceEEEecCCCCC----CCcCcccc-ccCcEeecCccccc
Confidence 36667777777 454433 11 111111 1236889999999988 56667788 78999999999887
Q ss_pred chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 266 KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 266 ~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
.++..++++++|++|++++|.+ + + + | .+..+++|+.||+++|.+.+-
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l-~--~-l---p------~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNAL-E--N-V---D------GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCC-C--C-C---G------GGTTCSSCCEEECCSSCCCSS
T ss_pred -ccchhhhcCCCCCEEECCCCCC-C--C-C---c------ccCCCCCCcEEECCCCCCCCC
Confidence 5677888999999999999987 2 1 2 2 267899999999999988653
No 165
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.63 E-value=3.2e-08 Score=96.14 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCcc-ccCCcccchHHHhc---cccccEEEcCCCC-CcchhhHhhc
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCM-FLFDNKDLSFLAEF---KDTLVSLVLFNVS-IVKDNLDHIC 273 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~-i~~~~~~l~~L~~l---~~~L~~L~L~~~~-~~~~~~~~l~ 273 (778)
.+|+.|++++|.+ ++.++. .+.+|++|++|+|++|. ++ |. .+..+..+ +++|++|+|++|. +++..+..+.
T Consensus 61 ~~L~~LDLs~~~I-td~GL~-~L~~~~~L~~L~L~~C~~It-D~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCI-MSIGFD-HMEGLQYVEKIRLCKCHYIE-DG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCC-CGGGGG-GGTTCSCCCEEEEESCTTCC-HH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCc-cHHHHH-HhcCCCCCCEEEeCCCCccC-HH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4799999999997 898887 55789999999999986 66 44 36667663 2579999999986 7888888888
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLV 314 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~ 314 (778)
++++|++|++++|+.+++.| .....+...+|+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~g-------l~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKE-------KIVQAFKTSLPSLE 170 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHH-------HHHHHHHHHCTTCE
T ss_pred cCCCCCEEECCCCCCCCchH-------HHHHHHHHHCCCcE
Confidence 99999999999998755422 12233456788765
No 166
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.59 E-value=3e-08 Score=118.45 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=86.5
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch-HHHhccccccEEEcCCCCCcchhhHhhcC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS-FLAEFKDTLVSLVLFNVSIVKDNLDHICS 274 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~-~L~~l~~~L~~L~L~~~~~~~~~~~~l~~ 274 (778)
..+++|+.|+|++|.+ .. ++..+..+++|++|+|++|.++ .++ .+..+ ++|+.|+|++|.++ .++..+++
T Consensus 221 ~~l~~L~~L~Ls~n~l-~~--l~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQI-FN--ISANIFKYDFLTRLYLNGNSLT----ELPAEIKNL-SNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -CCCCCCEEECTTSCC-SC--CCGGGGGCCSCSCCBCTTSCCS----CCCGGGGGG-TTCCEEECTTSCCS-SCCSSGGG
T ss_pred ccCCCCcEEECCCCCC-CC--CChhhcCCCCCCEEEeeCCcCc----ccChhhhCC-CCCCEEeCcCCcCC-ccChhhcC
Confidence 6788999999999988 42 2223447999999999999987 454 47788 79999999999988 56777889
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 275 L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
|++|++|+|++|.+ + .+ |. .+..+++|+.|||++|.+.+
T Consensus 292 l~~L~~L~L~~N~l-~---~l---p~-----~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMV-T---TL---PW-----EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCC-C---CC---CS-----STTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCC-C---cc---Ch-----hhhcCCCccEEeCCCCccCC
Confidence 99999999999987 2 12 32 26789999999999999875
No 167
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.56 E-value=1.4e-07 Score=91.80 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=91.5
Q ss_pred CccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhhhhccccccccccccchhhhcccCCCCCCCccc
Q psy17257 110 HVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTY 189 (778)
Q Consensus 110 ~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~ 189 (778)
..+.++++++ +++.-. ....++|+.|++++|.+. ..+
T Consensus 8 ~~~~l~~~~~-~l~~~p----~~~~~~l~~L~l~~n~l~---~~~----------------------------------- 44 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVP----TGIPSSATRLELESNKLQ---SLP----------------------------------- 44 (177)
T ss_dssp ETTEEECCSS-CCSSCC----TTCCTTCSEEECCSSCCC---CCC-----------------------------------
T ss_pred CCCEEEecCC-CCccCC----CCCCCCCcEEEeCCCccc---EeC-----------------------------------
Confidence 3567777776 454311 122468999999998764 111
Q ss_pred chhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcch
Q psy17257 190 KQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 190 ~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~ 267 (778)
...+..+++|++|++++|.+ +... ...+..+++|+.|++++|.++ .+. .+..+ ++|++|++++|.++.-
T Consensus 45 --~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l-~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 45 --HGVFDKLTQLTKLSLSQNQI-QSLP-DGVFDKLTKLTILYLHENKLQ----SLPNGVFDKL-TQLKELALDTNQLKSV 115 (177)
T ss_dssp --TTTTTTCTTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCSCC
T ss_pred --HHHhcCcccccEEECCCCcc-eEeC-hhHccCCCccCEEECCCCCcc----ccCHHHhhCC-cccCEEECcCCcceEe
Confidence 01226789999999999988 5422 235678999999999999998 343 35677 7999999999998754
Q ss_pred hhHhhcCCCCccEEeccCCCC
Q psy17257 268 NLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 268 ~~~~l~~L~~L~~LdLS~~~~ 288 (778)
....+..+++|++|++++|++
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 116 PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHHHhcCCcccCEEEecCCCe
Confidence 344467899999999999987
No 168
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.3e-07 Score=91.25 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=93.3
Q ss_pred hhhcCCCccEEEecCC-cccChhHHH---HHhccCCCCCeEeccCccccCCcc--cc-hHHHhccccccEEEcCCCCCcc
Q psy17257 194 YILKAPKLRRFSLIGH-TLMSQSICT---QLYRDMPHLTHLNLSKCMFLFDNK--DL-SFLAEFKDTLVSLVLFNVSIVK 266 (778)
Q Consensus 194 ~~~~l~~L~~L~Ls~~-~l~s~~~l~---~~~~~lp~L~~LdLS~~~i~~~~~--~l-~~L~~l~~~L~~L~L~~~~~~~ 266 (778)
.+...++|++|++++| .+ ++++.. ..+...++|++|||++|.+. +.+ .+ ..+... ++|++|+|++|.+.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i-~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~~g~~~l~~~L~~n-~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNI-PVPTLKACAEALKTNTYVKKFSIVGTRSN-DPVAFALAEMLKVN-NTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTC-CHHHHHHHHHHHTTCCSCCEEECTTSCCC-HHHHHHHHHHHHHC-SSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCC-CHHHHHHHHHHHHhCCCcCEEECcCCCCC-hHHHHHHHHHHHhC-CCcCEEECcCCcCCH
Confidence 4478899999999999 88 776554 34556789999999999997 332 11 224455 689999999999986
Q ss_pred h----hhHhhcCCCCccEEec--cCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCCc
Q psy17257 267 D----NLDHICSLPLLRRLDI--SVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRG 327 (778)
Q Consensus 267 ~----~~~~l~~L~~L~~LdL--S~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~~ 327 (778)
. +...+...++|++||+ ++|.+ ++.|. ..+...+...++|+.||+++|.+...+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i-~~~g~------~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPL-GNNVE------MEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCC-CHHHH------HHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCC-CHHHH------HHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 4 3455777899999999 77887 43221 345556788899999999999876443
No 169
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=2.7e-07 Score=90.83 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=85.3
Q ss_pred CceeEEEeeCC-ccCHHHHHhhc-----cCCccEEecCCCCCCCHhHHHHHH---hcCCCCceeecCCCCCCCccccchh
Q psy17257 86 THMKSVKLRNA-EVSDSGMQKLL-----SHHVQELELIKCANVSQASLEVLN---MSSDQLYSLSLGPHCSMFPDCLESE 156 (778)
Q Consensus 86 ~~L~~L~L~~~-~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~~l~~L~---~~~~~L~~L~Ls~c~~~~~~~~~~~ 156 (778)
+.|++|+|++| .+++.+...+. .++|++|+|++| .+++.+...++ ...++|++|+|++|.+. +.+..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~~g~~-- 111 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFIS-GSGIL-- 111 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-HHHHH--
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCC-HHHHH--
Confidence 58999999999 89998887553 578999999998 69988776554 34578999999998764 21111
Q ss_pred hhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEe--cCCcccChhH---HHHHhccCCCCCeEe
Q psy17257 157 VVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSL--IGHTLMSQSI---CTQLYRDMPHLTHLN 231 (778)
Q Consensus 157 ~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~L--s~~~l~s~~~---l~~~~~~lp~L~~Ld 231 (778)
.+. ..+...++|++|++ ++|.+ ++++ +...+...+.|++||
T Consensus 112 -~l~--------------------------------~~L~~n~~L~~L~L~~~~N~i-~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 112 -ALV--------------------------------EALQSNTSLIELRIDNQSQPL-GNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp -HHH--------------------------------HGGGGCSSCCEEECCCCSSCC-CHHHHHHHHHHHHHCSSCCEEE
T ss_pred -HHH--------------------------------HHHHhCCCceEEEecCCCCCC-CHHHHHHHHHHHHhCCCcCEEe
Confidence 010 12366788999999 78888 7765 444556678899999
Q ss_pred ccCcccc
Q psy17257 232 LSKCMFL 238 (778)
Q Consensus 232 LS~~~i~ 238 (778)
+++|.+.
T Consensus 158 L~~n~i~ 164 (185)
T 1io0_A 158 YHFTQQG 164 (185)
T ss_dssp CCCSSHH
T ss_pred ccCCCCC
Confidence 9998886
No 170
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.49 E-value=2.1e-07 Score=92.16 Aligned_cols=86 Identities=20% Similarity=0.146 Sum_probs=71.9
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|+.|++++|.+ +... ...+..+++|+.|++++|.++ .+. .+..+ ++|+.|+|++|.++.-....+.
T Consensus 51 ~~l~~L~~L~Ls~N~i-~~i~-~~~f~~l~~L~~L~Ls~N~l~----~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRI-STLS-NQSFSNMTQLLTLILSYNRLR----CIPPRTFDGL-KSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp GGCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----BCCTTTTTTC-TTCCEEECCSSCCCBCCTTTTT
T ss_pred hcccCCCEEECCCCcC-CEeC-HhHccCCCCCCEEECCCCccC----EeCHHHhCCC-CCCCEEECCCCCCCeeChhhhh
Confidence 7789999999999998 5422 235778999999999999998 443 47778 7999999999999864445678
Q ss_pred CCCCccEEeccCCCC
Q psy17257 274 SLPLLRRLDISVSSD 288 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~ 288 (778)
.+++|++|++++|+.
T Consensus 124 ~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 124 DLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred cCccccEEEeCCCCe
Confidence 899999999999987
No 171
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=1.2e-08 Score=101.48 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=88.1
Q ss_pred hhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 195 ILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 195 ~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
+..+++|+.|++++|.+ ++ ++ .+..+++|+.|++++|.++ .++. +..+ ++|+.|++++|++++ +..+.
T Consensus 44 ~~~l~~L~~L~ls~n~l-~~--l~-~~~~l~~L~~L~l~~n~l~----~l~~~~~~~-~~L~~L~L~~N~l~~--l~~~~ 112 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNI-EK--IS-SLSGMENLRILSLGRNLIK----KIENLDAVA-DTLEELWISYNQIAS--LSGIE 112 (198)
T ss_dssp HHHTTTCSEEECSEEEE-SC--CC-CHHHHTTCCEEEEEEEEEC----SCSSHHHHH-HHCSEEEEEEEECCC--HHHHH
T ss_pred HhcCCCCCEEECCCCCC-cc--cc-ccccCCCCCEEECCCCCcc----cccchhhcC-CcCCEEECcCCcCCc--CCccc
Confidence 37899999999999998 55 33 6678999999999999998 5654 4555 799999999999875 33688
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~ 325 (778)
.+++|++|++++|.+ ++ + ..+. .+..+++|+.|++++|.+.+
T Consensus 113 ~l~~L~~L~l~~N~i-~~---~-----~~~~-~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKI-TN---W-----GEID-KLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESEEEC-CC---H-----HHHH-HHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCCCcC-Cc---h-----hHHH-HHhcCCCCCEEEecCCcccc
Confidence 899999999999987 21 1 1122 37889999999999998753
No 172
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.45 E-value=5.6e-06 Score=95.19 Aligned_cols=312 Identities=14% Similarity=0.172 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCcc
Q psy17257 425 ALVVVLEALDTHLTERHIQISGSANLFYIVKMK-DRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQD 503 (778)
Q Consensus 425 ~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~-~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~ 503 (778)
++..+++-++. .+..+|..|..+|.+|+..+ ...+..+ .....|..|+.-+...+ +..+++|+..+|.|-..
T Consensus 91 ~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa~~~~~~nk~~I-~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~--- 163 (584)
T 3l6x_A 91 GIPVLVGLLDH--PKKEVHLGACGALKNISFGRDQDNKIAI-KNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS--- 163 (584)
T ss_dssp HHHHHHHGGGC--SSHHHHHHHHHHHHHHTSSSCHHHHHHH-HHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT---
T ss_pred CcHHHHHHHCC--CCHHHHHHHHHHHHHHHccCCHHHHHHH-HHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC---
Confidence 45555555543 35679999999999998742 1111111 23345677888887654 45688887666655544
Q ss_pred ccccHHHHHHHHHHHHhhhc-------cc-CC------CCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHH
Q psy17257 504 VQFDYDRLVRILLHIITEME-------HE-SN------SNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLR 568 (778)
Q Consensus 504 ~~f~~~~~~~~~l~~~~~~~-------~d-~~------~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~ 568 (778)
.+-+...+++-++..|...- .+ .+ ......++.-|..++..++.. +++-...+. ..|.+..++.
T Consensus 164 ~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~ 242 (584)
T 3l6x_A 164 HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIF 242 (584)
T ss_dssp SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHH
T ss_pred CchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHH
Confidence 23445555443443333210 00 00 000157888899999888864 444344444 5688999999
Q ss_pred HHHHHHhhh-ccchhHHHHHHHHHhcccccHHH---HHHHH-------------hcCChH---------HHHHHHhhCCC
Q psy17257 569 LIKDRIEKQ-RCDDILEVAWSAMWNVTDETAIN---CARFL-------------NNGGME---------LFLNCLQYFPE 622 (778)
Q Consensus 569 ~i~~~~~~~-~~d~~l~~~~s~lwn~tde~p~~---c~~f~-------------~~~g~~---------~~~~~l~~f~~ 622 (778)
+++..+... ..+...+-+..+|||++...... +.+|+ ..+|++ .++..|+.- .
T Consensus 243 ~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s-~ 321 (584)
T 3l6x_A 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES-K 321 (584)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC-C
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC-C
Confidence 999876543 34566788889999987653211 11122 345554 456677654 4
Q ss_pred cHHHHHHHHhhhhhhhhh-----hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHH
Q psy17257 623 KDELLRNMMGLLGNVAEV-----KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREK 697 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev-----~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~ 697 (778)
.++++++..+.|.|++-- .+.|..+-...-+..+.+||++. ..+|-..|++.|.+|+.+ +..+.. ....
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~A~~aL~nLs~~-~~~~~~---I~~g 395 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVD-ARNKEL---IGKH 395 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTT-CSCHHH---HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-hhHHHH---HHhC
Confidence 788999999999999532 23444445577799999999984 679999999999999874 443321 1223
Q ss_pred HHHHHHHHhccCCCCCccceecccchhhHHhhccCC-------CchhhHHHHHHHHHhcccCCccccchhhhhchHHHHH
Q psy17257 698 VLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYH-------TPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQ 770 (778)
Q Consensus 698 ~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~-------~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~ 770 (778)
++. ++..||...+ .++++.=|+||+.|+++.+| ..-..+++.||++.|-
T Consensus 396 ~ip-----------------------~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-~~~~~I~~~g~I~~Lv 451 (584)
T 3l6x_A 396 AIP-----------------------NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-EAAKKLRETQGIEKLV 451 (584)
T ss_dssp HHH-----------------------HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHH
T ss_pred CHH-----------------------HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHH
Confidence 333 3444554432 34566679999999999875 4567889999999999
Q ss_pred HHhhc
Q psy17257 771 NLLDN 775 (778)
Q Consensus 771 ~~~~~ 775 (778)
.|..+
T Consensus 452 ~LL~s 456 (584)
T 3l6x_A 452 LINKS 456 (584)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98865
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=6.4e-07 Score=97.68 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=18.7
Q ss_pred ccccEEEcCCCCCcchhh----HhhcCCCCccEEeccCCCC
Q psy17257 252 DTLVSLVLFNVSIVKDNL----DHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 252 ~~L~~L~L~~~~~~~~~~----~~l~~L~~L~~LdLS~~~~ 288 (778)
++|++|+|+.|.+.+... ..+..+++|+.||++.|.+
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 345555555554443221 1223456666777766654
No 174
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=5.9e-07 Score=96.53 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=72.3
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCC
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPL 277 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~ 277 (778)
+++.+.+.++ + ...++..+...+++|+.|+|++|.++ .++ .+..| .+|++|.+.++ +..-....+.+|++
T Consensus 203 ~~~~l~~~~~-l-~~~~~~~l~~~~~~L~~l~L~~n~i~----~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 203 DINFLTIEGK-L-DNADFKLIRDYMPNLVSLDISKTNAT----TIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp GCSEEEEEEC-C-CHHHHHHHHHHCTTCCEEECTTBCCC----EECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ccceEEEeee-e-cHHHHHHHHHhcCCCeEEECCCCCcc----eecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChh
Confidence 3344444443 2 33445544456899999999998887 554 47778 79999999886 44333445788999
Q ss_pred cc-EEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCC
Q psy17257 278 LR-RLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324 (778)
Q Consensus 278 L~-~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~ 324 (778)
|+ .+++++ .+ +.-+.. .+..|++|+.|++++|.+.
T Consensus 275 L~~~l~l~~-~l-~~I~~~----------aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 275 LAGTLELPA-SV-TAIEFG----------AFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CCEEEEECT-TC-CEECTT----------TTTTCTTEEEEEECSSCCC
T ss_pred ccEEEEEcc-cc-eEEchh----------hhhCCccCCEEEeCCCccC
Confidence 99 999988 33 111111 3688999999999998874
No 175
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.34 E-value=6.7e-07 Score=86.57 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=79.8
Q ss_pred CccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhcCCCC
Q psy17257 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPL 277 (778)
Q Consensus 200 ~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~ 277 (778)
..+.++++++.+ +. ++.. -.++|+.|++++|.++ .+ ..+..+ ++|+.|+|++|+++.-....+..+++
T Consensus 10 ~~~~l~~s~n~l-~~--ip~~--~~~~l~~L~L~~N~i~----~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGKSL-AS--VPTG--IPTTTQVLYLYDNQIT----KLEPGVFDRL-TQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp ETTEEECTTSCC-SS--CCSC--CCTTCSEEECCSSCCC----CCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCEEEeCCCCc-Cc--cCcc--CCCCCcEEEcCCCcCC----ccChhhhcCc-ccCCEEECCCCCcCccChhhccCCCC
Confidence 457899999988 43 1111 1478999999999998 44 247778 79999999999988644455688999
Q ss_pred ccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 278 LRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 278 L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
|++|++++|++ +. + |. ..+..+++|+.|++++|.+..+
T Consensus 80 L~~L~L~~N~l-~~---~---~~----~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQL-KS---I---PR----GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCC-CC---C---CT----TTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCcc-CE---e---CH----HHhcCCCCCCEEEeCCCCCCCC
Confidence 99999999987 21 1 11 1267899999999999998654
No 176
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.30 E-value=5.1e-06 Score=87.89 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=127.3
Q ss_pred HHHHHHhcccccHHHHHHHHhcCChHHHHH-HHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccC
Q psy17257 586 AWSAMWNVTDETAINCARFLNNGGMELFLN-CLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSK 663 (778)
Q Consensus 586 ~~s~lwn~tde~p~~c~~f~~~~g~~~~~~-~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~ 663 (778)
++..|-++.+. .++-..|++.||+..+++ .|+. .+++++......||||+.- .+.|..++....+..+.++|.+.
T Consensus 60 Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~ 136 (296)
T 1xqr_A 60 ALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136 (296)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 45556666664 456788999999999999 9874 4789999999999999975 56788888889999999999863
Q ss_pred CCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHH
Q psy17257 664 SDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVW 743 (778)
Q Consensus 664 ~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~w 743 (778)
...+|.-.|+..|+.|+... .+..+.+.+ .--+.|+..+|+. ..+.+|-+|+|
T Consensus 137 -~~~~v~~~A~~ALsnl~~~~-------~~~~~~~~~------------------~ggi~~L~~lL~~-~d~~v~~~A~~ 189 (296)
T 1xqr_A 137 -ACDTVRVKALFAISCLVREQ-------EAGLLQFLR------------------LDGFSVLMRAMQQ-QVQKLKVKSAF 189 (296)
T ss_dssp -SCHHHHHHHHHHHHHHHTTC-------HHHHHHHHH------------------TTHHHHHHHHHHS-SCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHcCC-------cHHHHHHHH------------------CCCHHHHHHHHcC-CCHHHHHHHHH
Confidence 35789999999999998632 122222322 2234677888874 68999999999
Q ss_pred HHHHhcccCCccccchhhhhchHHHHHHHhhccC
Q psy17257 744 ALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 744 a~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~~ 777 (778)
||.++|.. ...++..++++|+++.|-.+..+++
T Consensus 190 aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d 222 (296)
T 1xqr_A 190 LLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEH 222 (296)
T ss_dssp HHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCC
T ss_pred HHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCC
Confidence 99999997 4568999999999999999887764
No 177
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.27 E-value=1.1e-06 Score=84.97 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCC
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~ 276 (778)
++|+.|++++|.+ +... +..+..+++|+.||+++|.++ .++ .+..+ ++|++|+|++|++..-....+..++
T Consensus 30 ~~l~~L~L~~N~i-~~~~-~~~~~~l~~L~~L~Ls~N~l~----~l~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDNQI-TKLE-PGVFDRLTQLTRLDLDNNQLT----VLPAGVFDKL-TQLTQLSLNDNQLKSIPRGAFDNLK 102 (170)
T ss_dssp TTCSEEECCSSCC-CCCC-TTTTTTCTTCSEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCCCcC-CccC-hhhhcCcccCCEEECCCCCcC----ccChhhccCC-CCCCEEECCCCccCEeCHHHhcCCC
Confidence 7899999999998 5422 336778999999999999998 443 25677 7999999999998864455688999
Q ss_pred CccEEeccCCCC
Q psy17257 277 LLRRLDISVSSD 288 (778)
Q Consensus 277 ~L~~LdLS~~~~ 288 (778)
+|++|++++|++
T Consensus 103 ~L~~L~L~~N~~ 114 (170)
T 3g39_A 103 SLTHIWLLNNPW 114 (170)
T ss_dssp TCCEEECCSSCB
T ss_pred CCCEEEeCCCCC
Confidence 999999999997
No 178
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.27 E-value=1.2e-06 Score=85.18 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=76.1
Q ss_pred ccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhcCCCCc
Q psy17257 201 LRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLL 278 (778)
Q Consensus 201 L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L 278 (778)
-+.++++++.+ +. ++.. -.++|+.|++++|.++ .+ ..+..+ ++|+.|+|++|+++.-....+.++++|
T Consensus 14 ~~~l~~~~n~l-~~--iP~~--~~~~L~~L~Ls~N~l~----~~~~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 14 QTLVNCQNIRL-AS--VPAG--IPTDKQRLWLNNNQIT----KLEPGVFDHL-VNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SSEEECCSSCC-SS--CCSC--CCTTCSEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcEEEeCCCCC-Cc--cCCC--cCCCCcEEEeCCCCcc----ccCHHHhcCC-cCCCEEECCCCCCCccChhHhCCcchh
Confidence 37888888887 43 1111 1378999999999987 34 246777 789999999998876333446789999
Q ss_pred cEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCCCCC
Q psy17257 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGR 326 (778)
Q Consensus 279 ~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l~~~ 326 (778)
++||+++|.+ + .+ |. ..+..+++|+.|++++|.+..+
T Consensus 84 ~~L~L~~N~l-~---~l---~~----~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 84 TQLDLNDNHL-K---SI---PR----GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCC-C---CC---CT----TTTTTCTTCSEEECCSSCBCTT
T ss_pred hEEECCCCcc-c---ee---CH----HHhccccCCCEEEeCCCCcccc
Confidence 9999999987 2 11 11 1267789999999999987644
No 179
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.24 E-value=5.8e-07 Score=97.49 Aligned_cols=106 Identities=14% Similarity=0.015 Sum_probs=66.8
Q ss_pred cCCCccEEEecCCcccChhHHHHHhccC-CCCCeEeccCccccCCcccchH-HHhccccccEEEcCCCCCcchhhH-hhc
Q psy17257 197 KAPKLRRFSLIGHTLMSQSICTQLYRDM-PHLTHLNLSKCMFLFDNKDLSF-LAEFKDTLVSLVLFNVSIVKDNLD-HIC 273 (778)
Q Consensus 197 ~l~~L~~L~Ls~~~l~s~~~l~~~~~~l-p~L~~LdLS~~~i~~~~~~l~~-L~~l~~~L~~L~L~~~~~~~~~~~-~l~ 273 (778)
...++..|++.++..+..-... .+..+ ..++.|++++|.++ .++. .... .+|+.|.+.+++..+.++. .+.
T Consensus 126 ~~~~l~~l~l~~~~~i~~l~~~-~f~~~~~~l~~L~L~~N~i~----~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 126 HSLQKVLLDIQDNINIHTIERN-SFVGLSFESVILWLNKNGIQ----EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp CBSSCEEEEEESCTTCCEECTT-SSTTSBSSCEEEECCSSCCC----EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTT
T ss_pred ccchhhhhhhcccccccccccc-chhhcchhhhhhcccccccc----CCChhhccc-cchhHHhhccCCcccCCCHHHhc
Confidence 4456778888664321321111 23333 46888999999987 5543 3344 5799999986555444543 467
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
.+++|++||+|+|++ + ..| ...+.+|+.|.+.++.
T Consensus 200 ~l~~L~~LdLs~N~l-~------~lp-------~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 200 GASGPVILDISRTRI-H------SLP-------SYGLENLKKLRARSTY 234 (350)
T ss_dssp TEECCSEEECTTSCC-C------CCC-------SSSCTTCCEEECTTCT
T ss_pred cCcccchhhcCCCCc-C------ccC-------hhhhccchHhhhccCC
Confidence 889999999999987 2 112 2346677777776664
No 180
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.23 E-value=1.7e-06 Score=84.16 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchH--HHhccccccEEEcCCCCCcchhhHhhcCCC
Q psy17257 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF--LAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276 (778)
Q Consensus 199 ~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~--L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~ 276 (778)
++|+.|++++|.+ +... +..+..+++|+.|+|++|.++ .++. +..+ ++|+.|+|++|++..-....+..++
T Consensus 33 ~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQI-TKLE-PGVFDHLVNLQQLYFNSNKLT----AIPTGVFDKL-TQLTQLDLNDNHLKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCCc-cccC-HHHhcCCcCCCEEECCCCCCC----ccChhHhCCc-chhhEEECCCCccceeCHHHhcccc
Confidence 7899999999998 5422 336788999999999999998 4543 5677 7999999999998854444588899
Q ss_pred CccEEeccCCCC
Q psy17257 277 LLRRLDISVSSD 288 (778)
Q Consensus 277 ~L~~LdLS~~~~ 288 (778)
+|++|++++|++
T Consensus 106 ~L~~L~L~~N~~ 117 (174)
T 2r9u_A 106 SLTHIYLYNNPW 117 (174)
T ss_dssp TCSEEECCSSCB
T ss_pred CCCEEEeCCCCc
Confidence 999999999997
No 181
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.18 E-value=7.6e-05 Score=87.48 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=169.9
Q ss_pred cccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhhccchhH
Q psy17257 505 QFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQRCDDIL 583 (778)
Q Consensus 505 ~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~~~d~~l 583 (778)
......+++...+++.+...| -++.|+.-+..+..+ ++-++.+. +.++++.|+++++.+- |..+
T Consensus 329 ~~si~~La~~~~~~L~~~~~~--------~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~-----d~s~ 393 (778)
T 3opb_A 329 CINLKQLSEIFINAISRRIVP--------KVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQK-----MTHC 393 (778)
T ss_dssp TCCHHHHHHHHHHHTTTCCHH--------HHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTC-----CTTH
T ss_pred cCcHHHHHHHHHHHHhcCCcc--------HHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCC-----CchH
Confidence 345677899999999975423 278999999888765 88888888 6799999999997621 2222
Q ss_pred -HHHHHHHHhcccccH-------------------------------------H-HHHHHHhcCChHHHHHHHhhCCCcH
Q psy17257 584 -EVAWSAMWNVTDETA-------------------------------------I-NCARFLNNGGMELFLNCLQYFPEKD 624 (778)
Q Consensus 584 -~~~~s~lwn~tde~p-------------------------------------~-~c~~f~~~~g~~~~~~~l~~f~~~~ 624 (778)
--+++++.|+|...| + +|+..++.|++..++..+.. +.+
T Consensus 394 ~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~ 471 (778)
T 3opb_A 394 LYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSP 471 (778)
T ss_dssp HHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCH
T ss_pred HHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCH
Confidence 336777888765222 1 79999999999999999876 578
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCC-chhhHHHHHHHHHHhccCCCccccccccHHHHHHHHH
Q psy17257 625 ELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDG-IEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMV 703 (778)
Q Consensus 625 ~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~-~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~ 703 (778)
++++.+...|+|+++.++-|..++....++.+..+|.+..+. .++.-+||..||+|+... +|..
T Consensus 472 ~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-------np~~-------- 536 (778)
T 3opb_A 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT-------NPGL-------- 536 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-------CHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-------CHHH--------
Confidence 899999999999999999999999999999999999886432 347899999999998632 2221
Q ss_pred HHhccCCCCCccceecccchhhHHhhccC-C-----------Cchh-hHHHHHHHHHhcccCC---ccccchhhh-hchH
Q psy17257 704 EAIERWPIDSERNINYRSFEPIIQLLRVY-H-----------TPEC-QHWSVWALANLTKVYP---EKYCQVVEA-EGGI 766 (778)
Q Consensus 704 ~~i~~w~~~~~~~v~yrsf~p~~~ll~~~-~-----------~~~~-q~wa~wa~~~~~~~~~---~~y~~~~~~-e~g~ 766 (778)
++.. .+ .+-.-.|++.||... . .|+. +.=|+.|+-|+++... +..+.-+++ +||+
T Consensus 537 -~f~~-----~~--~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 537 -IFKK-----YS--ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp -HSSS-----SC--STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred -HcCC-----Cc--cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 0111 01 134557888887721 1 2223 5579999999999642 345566677 4999
Q ss_pred HHHHHHhhcc
Q psy17257 767 ELLQNLLDNE 776 (778)
Q Consensus 767 ~~l~~~~~~~ 776 (778)
+.|.++..++
T Consensus 609 ~~L~~LL~s~ 618 (778)
T 3opb_A 609 STIENLMLDE 618 (778)
T ss_dssp HHHHHGGGCS
T ss_pred HHHHHHHhCC
Confidence 9999988654
No 182
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.18 E-value=1.4e-05 Score=84.49 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=133.6
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+.+++.++.. +++....+-+.|.+..++++++... ...+.+-+..|+.|++...|..-+.|++.+|++
T Consensus 96 ~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll~LL~~~~----~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 96 AGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDA----CDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHccCC----CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 77999999999888764 6776777778899999999987521 134557788889999887888888999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhh-hhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev-~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
.++++|.. .+..++++...+|+|++.. .+.+..++....++.++.||.+ +..+|...|++.|.+|+.++++.|..
T Consensus 171 ~L~~lL~~--~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~~~~~~~ 246 (296)
T 1xqr_A 171 VLMRAMQQ--QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRE 246 (296)
T ss_dssp HHHHHHHS--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCChhHHHH
Confidence 99999985 5889999999999999876 5677888899999999999998 47899999999999999987777765
Q ss_pred ccccH---HHHHHHHHHHhc
Q psy17257 691 RYPAR---EKVLAKMVEAIE 707 (778)
Q Consensus 691 ~~~~r---~~~~~~~~~~i~ 707 (778)
+...+ ..+++.-.+.++
T Consensus 247 ~~~~~~~l~~lL~~~~~~lq 266 (296)
T 1xqr_A 247 CREPELGLEELLRHRCQLLQ 266 (296)
T ss_dssp HHCGGGCHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHcc
Confidence 33222 344444444444
No 183
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.05 E-value=5.4e-06 Score=84.34 Aligned_cols=144 Identities=21% Similarity=0.260 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHH
Q psy17257 533 FVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMEL 612 (778)
Q Consensus 533 ~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~ 612 (778)
.+|..|...+..++.+ +++.+..+.+.|.+..++++++.. ...+-+-+-.+|+|++-.++++-...++.||++.
T Consensus 25 ~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~-----~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~ 98 (233)
T 3tt9_A 25 SRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQ-----NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPR 98 (233)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHH
Confidence 5777777666555544 577788888889999999988642 1345566888999999888999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhc---cC-----------CCCchhhHHHHHHHH
Q psy17257 613 FLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS---SK-----------SDGIEVSYNAAGVLS 678 (778)
Q Consensus 613 ~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~---~~-----------~~~~evsy~a~gila 678 (778)
+++.|...+ +.++++++.+.|-|++-.++.|..++.. -|..+.+++. +. ....+|-|||+|+|+
T Consensus 99 Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~ 176 (233)
T 3tt9_A 99 LLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLR 176 (233)
T ss_dssp HHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHH
Confidence 999998753 7789999999999999999999888764 6888877653 11 125689999999999
Q ss_pred HHhccC
Q psy17257 679 HIASDG 684 (778)
Q Consensus 679 hl~~~~ 684 (778)
.|.+.+
T Consensus 177 nLss~~ 182 (233)
T 3tt9_A 177 NMSSAG 182 (233)
T ss_dssp HHTTSC
T ss_pred HHhcCC
Confidence 999854
No 184
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.96 E-value=1.1e-05 Score=86.96 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=32.3
Q ss_pred hccCCCCCeEeccC-ccccCCcccch--HHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCC
Q psy17257 221 YRDMPHLTHLNLSK-CMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSD 288 (778)
Q Consensus 221 ~~~lp~L~~LdLS~-~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~ 288 (778)
+..+++|+.|+|++ |.++ .+. .+..+ ++|+.|+|++|++++..+..+.++++|++|||++|.+
T Consensus 27 l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQ----HLELRDLRGL-GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCC----EECGGGSCSC-CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCCeeEEEccCCCCCC----CcChhHhccc-cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44455555555553 5554 222 24444 4555555555555543344455555555555555554
No 185
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.6e-05 Score=82.68 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=75.7
Q ss_pred hcCCCccE--EEecCCcccC--hhHHHHHhccCCCCCeEeccCccccCCcccchH----HHhccccccEEEcCCCCCcch
Q psy17257 196 LKAPKLRR--FSLIGHTLMS--QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSF----LAEFKDTLVSLVLFNVSIVKD 267 (778)
Q Consensus 196 ~~l~~L~~--L~Ls~~~l~s--~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~----L~~l~~~L~~L~L~~~~~~~~ 267 (778)
...|.|.. ++++.|.. . ...+..+..++|+|+.|+||+|.++ .+.. +..+ ++|+.|+|++|.+.+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~-~~~~~~l~i~~~~l~~L~~L~Ls~N~l~----~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRR-SCMAATLRIIEENIPELLSLNLSNNRLY----RLDDMSSIVQKA-PNLKILNLSGNELKSE 211 (267)
T ss_dssp GGCHHHHHTTCCCCTTSH-HHHHHHHHHHHHHCTTCCEEECTTSCCC----CCGGGTTHHHHS-TTCCEEECTTSCCCSG
T ss_pred CCCcchhhcCccccCCHH-HHHHHHHHHHHhhCCCCCEEECCCCCCC----CCccchhHHhhC-CCCCEEECCCCccCCc
Confidence 44556665 66666643 1 1223333467999999999999998 4432 4467 8999999999998752
Q ss_pred -hhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEe
Q psy17257 268 -NLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317 (778)
Q Consensus 268 -~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LD 317 (778)
.+..+..+ +|++|++++|++ . +.+ +........++..+|+|+.||
T Consensus 212 ~~l~~l~~l-~L~~L~L~~Npl-~--~~~-~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 212 RELDKIKGL-KLEELWLDGNSL-C--DTF-RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGGGTTS-CCSEEECTTSTT-G--GGC-SSHHHHHHHHHHHCTTCCEES
T ss_pred hhhhhcccC-CcceEEccCCcC-c--ccc-CcchhHHHHHHHHCcccCeEC
Confidence 34445555 999999999997 2 223 211233445688999999997
No 186
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=2.8e-05 Score=80.75 Aligned_cols=83 Identities=24% Similarity=0.201 Sum_probs=65.9
Q ss_pred hcCCCccEEEecCCcccCh-hHHHHHhccCCCCCeEeccCccccCCcccchHHHhccc--cccEEEcCCCCCcchh----
Q psy17257 196 LKAPKLRRFSLIGHTLMSQ-SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKD--TLVSLVLFNVSIVKDN---- 268 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~-~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~--~L~~L~L~~~~~~~~~---- 268 (778)
.++|+|++|+|++|.+ ++ .+++..+..+|+|+.||||+|.+. ++..+..+ . +|++|.|.+|.+.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l-~~l~~l~~~~~~l~~L~~L~Ls~N~i~----~~~~l~~l-~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSGNELK----SERELDKI-KGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCC-CCCGGGTTHHHHSTTCCEEECTTSCCC----SGGGGGGG-TTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCC-CCCccchhHHhhCCCCCEEECCCCccC----Cchhhhhc-ccCCcceEEccCCcCccccCcch
Confidence 5789999999999999 44 345556778999999999999998 55555555 3 8999999999987522
Q ss_pred ---hHhhcCCCCccEEecc
Q psy17257 269 ---LDHICSLPLLRRLDIS 284 (778)
Q Consensus 269 ---~~~l~~L~~L~~LdLS 284 (778)
...+..+++|+.||=.
T Consensus 241 ~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHHHCTTCCEESSC
T ss_pred hHHHHHHHHCcccCeECCc
Confidence 2346789999999843
No 187
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=5.7e-05 Score=80.86 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=76.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhcccccc-EEEcCCCCCcchhhHhh
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLV-SLVLFNVSIVKDNLDHI 272 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~-~L~L~~~~~~~~~~~~l 272 (778)
..|++|+.|++++|.+ +.-+ ...+.+|++|+.|+++.| ++ .+ .++..| .+|+ .+.+.+ .++.-....+
T Consensus 223 ~~~~~L~~l~L~~n~i-~~I~-~~aF~~~~~L~~l~l~~n-i~----~I~~~aF~~~-~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNA-TTIP-DFTFAQKKYLLKIKLPHN-LK----TIGQRVFSNC-GRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp HHCTTCCEEECTTBCC-CEEC-TTTTTTCTTCCEEECCTT-CC----EECTTTTTTC-TTCCEEEEECT-TCCEECTTTT
T ss_pred HhcCCCeEEECCCCCc-ceec-HhhhhCCCCCCEEECCcc-cc----eehHHHhhCC-hhccEEEEEcc-cceEEchhhh
Confidence 4589999999999877 4322 236788999999999987 54 34 347788 7899 999988 5554344668
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEe
Q psy17257 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317 (778)
Q Consensus 273 ~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LD 317 (778)
.+|++|+.|+++.+.+ +.-+.. .+.++++|+.+.
T Consensus 294 ~~c~~L~~l~l~~n~i-~~I~~~----------aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKI-TTLGDE----------LFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCC-CEECTT----------TTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCcc-Cccchh----------hhcCCcchhhhc
Confidence 8999999999988876 211111 367899999875
No 188
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.64 E-value=4.1e-05 Score=82.43 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=67.5
Q ss_pred hhcCCCccEEEecC-CcccChhHHHHHhccCCCCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCcchhhHh
Q psy17257 195 ILKAPKLRRFSLIG-HTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIVKDNLDH 271 (778)
Q Consensus 195 ~~~l~~L~~L~Ls~-~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~~~~~~~ 271 (778)
+..+++|+.|+|++ |.+ +.-. +..+..+++|+.|||++|.++ .+. .+.++ ++|+.|+|++|+++.-....
T Consensus 27 l~~~~~L~~L~l~~~n~l-~~~~-~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHL-QHLE-LRDLRGLGELRNLTIVKSGLR----FVAPDAFHFT-PRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCSSC-CEEC-GGGSCSCCCCSEEECCSSCCC----EECTTGGGSC-SCCCEEECCSSCCSCCCSTT
T ss_pred CCCCCCeeEEEccCCCCC-CCcC-hhHhccccCCCEEECCCCccc----eeCHHHhcCC-cCCCEEeCCCCccceeCHHH
Confidence 37788999999996 888 5422 236788999999999999998 443 46788 79999999999987533333
Q ss_pred hcCCCCccEEeccCCCC
Q psy17257 272 ICSLPLLRRLDISVSSD 288 (778)
Q Consensus 272 l~~L~~L~~LdLS~~~~ 288 (778)
+..++ |++|++++|++
T Consensus 100 ~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TCSCC-CCEEECCSSCC
T ss_pred cccCC-ceEEEeeCCCc
Confidence 44444 99999999997
No 189
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0033 Score=73.75 Aligned_cols=342 Identities=12% Similarity=0.060 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHhcCCh--HHHHHHHHHHHHHhccccccC-Ch---HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcC
Q psy17257 384 CNEAQLLIAAKAYIDR--PEMLQQVLNDLYHIFRYDTCV-DI---EHALVVVLEALDTHLTERHIQISGSANLFYIVKMK 457 (778)
Q Consensus 384 ~~~~qil~al~~y~~R--~~~~~~aL~~L~~l~~~~~~~-~~---~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~ 457 (778)
.+.....+.+..|..+ ......|+..|-++.....-. .+ ..+++.+++.++. ..+..++..+...+-|++...
T Consensus 330 ~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 330 INLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCC
Confidence 4566788888888743 334667777776654211111 11 5567777777765 445678888888999998864
Q ss_pred CCCCCChHHHHHHHHHHH-HHHhcCCCch------hhhh-hHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCC
Q psy17257 458 DRPVLSSLTKRHIITTIL-NGMHMHLEDD------TMMR-NGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSN 529 (778)
Q Consensus 458 ~~~~~~~~~~~~~i~~LL-~am~~~~~~~------~l~~-n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~ 529 (778)
-.....-+..+++-...= ..-+.+|++. .+.. ||-..+-...| -++-.+.... +
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvI-------------p~Lv~Ll~S~-s---- 470 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELI-------------SFLKREMHNL-S---- 470 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHH-------------HHHHHHGGGS-C----
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCH-------------HHHHHHHcCC-C----
Confidence 322111111111111100 0122333222 1111 33221111111 1222333333 4
Q ss_pred CCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcc-cccHHHHHHHH---
Q psy17257 530 GSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT-DETAINCARFL--- 605 (778)
Q Consensus 530 ~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~t-de~p~~c~~f~--- 605 (778)
+.++..|+.++..++. +++-+..+.+.|.++.+++++....... +.+=+.+..||-+++ ...|.. .|=
T Consensus 471 --~~~re~A~~aL~nLS~--d~~~R~~lvqqGal~~LL~lL~s~~~~~--~~~k~~AA~ALArLlis~np~~--~f~~~~ 542 (778)
T 3opb_A 471 --PNCKQQVVRIIYNITR--SKNFIPQLAQQGAVKIILEYLANKQDIG--EPIRILGCRALTRMLIFTNPGL--IFKKYS 542 (778)
T ss_dssp --HHHHHHHHHHHHHHHT--SGGGHHHHHHTTHHHHHHHHTTCC---C--CHHHHHHHHHHHHHHHTSCHHH--HSSSSC
T ss_pred --HHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHhcCCHHH--HcCCCc
Confidence 7899999999988863 3666667777899999999887664321 112246777777755 333543 231
Q ss_pred hcCChHHHHHHHhhCCCc-----------HHHH-HHHHhhhhhhhhhh-----hhhhcccch-hHHHHHHHhhccCCCCc
Q psy17257 606 NNGGMELFLNCLQYFPEK-----------DELL-RNMMGLLGNVAEVK-----SLRPKLMTS-KFIEVFANLVSSKSDGI 667 (778)
Q Consensus 606 ~~~g~~~~~~~l~~f~~~-----------~~l~-~~~lgll~niaev~-----~l~~~l~~~-~~i~~~~~ll~~~~~~~ 667 (778)
-.+++.-+++-|..-++. +.++ -..+.-|+|+|... ++|.+++++ ..+..+.++|.+ ++.
T Consensus 543 ~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s--~n~ 620 (778)
T 3opb_A 543 ALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD--ENV 620 (778)
T ss_dssp STTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC--SSH
T ss_pred cccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC--CCH
Confidence 126778888877722332 2243 57899999999996 689889985 899999999988 467
Q ss_pred hhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHH
Q psy17257 668 EVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALAN 747 (778)
Q Consensus 668 evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~ 747 (778)
.|.=-|+..+++|+++.+... ..+..+.. --+++-++|+..|+. ..-+++|.=|.||+++
T Consensus 621 ~VrrAA~elI~NL~~~~e~i~---------------~k~~~~~~----~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAn 680 (778)
T 3opb_A 621 PLQRSTLELISNMMSHPLTIA---------------AKFFNLEN----PQSLRNFNILVKLLQ-LSDVESQRAVAAIFAN 680 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGTG---------------GGTSCCSS----HHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHH---------------HHHHhhcC----chhhccHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 888999999999998532111 01111110 112334789999995 5889999999999999
Q ss_pred hcccCCccccchhhh-hchHHHHHHHhhc
Q psy17257 748 LTKVYPEKYCQVVEA-EGGIELLQNLLDN 775 (778)
Q Consensus 748 ~~~~~~~~y~~~~~~-e~g~~~l~~~~~~ 775 (778)
+|+.+|.- |+-+.+ +||++.|-.+..+
T Consensus 681 Lts~~~~i-a~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 681 IATTIPLI-AKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHCHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHH-HHHHHHccccHHHHHHHHhc
Confidence 99877644 555555 4888887766554
No 190
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.55 E-value=0.00017 Score=71.10 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=76.5
Q ss_pred CceeEEEeeCC-ccCHHHHHhhc-----cCCccEEecCCCCCCCHhHHHHHH---hcCCCCceeecCCCCCCCccccchh
Q psy17257 86 THMKSVKLRNA-EVSDSGMQKLL-----SHHVQELELIKCANVSQASLEVLN---MSSDQLYSLSLGPHCSMFPDCLESE 156 (778)
Q Consensus 86 ~~L~~L~L~~~-~isd~~l~~L~-----~~~L~~LdLs~~~~lt~~~l~~L~---~~~~~L~~L~Ls~c~~~~~~~~~~~ 156 (778)
+.|+.|+|+++ .|.+.+...++ ...|++|+|++| .|++.+...|+ ...+.|++|+|++|.+. +.+..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-~~Ga~-- 116 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT-PELLA-- 116 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-HHHHH--
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC-HHHHH--
Confidence 57899999886 79988876554 578999999998 68887665444 34467888888888764 21111
Q ss_pred hhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCC---cccChh---HHHHHhccCCCCCeE
Q psy17257 157 VVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGH---TLMSQS---ICTQLYRDMPHLTHL 230 (778)
Q Consensus 157 ~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~---~l~s~~---~l~~~~~~lp~L~~L 230 (778)
.+. ..+..-+.|+.|+|+++ .+ .+. .+...+..-+.|+.|
T Consensus 117 -ala--------------------------------~aL~~N~tL~~L~L~n~~~~~i-g~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 117 -RLL--------------------------------RSTLVTQSIVEFKADNQRQSVL-GNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp -HHH--------------------------------HHTTTTCCCSEEECCCCSSCCC-CHHHHHHHHHHHHHCSSCCEE
T ss_pred -HHH--------------------------------HHHhhCCceeEEECCCCcCcCc-CHHHHHHHHHHHHhCCCcCeE
Confidence 111 11244456888888764 34 443 345566667788888
Q ss_pred eccCcccc
Q psy17257 231 NLSKCMFL 238 (778)
Q Consensus 231 dLS~~~i~ 238 (778)
+++.+.+.
T Consensus 163 ~l~~~~~g 170 (197)
T 1pgv_A 163 GISFASME 170 (197)
T ss_dssp ECCCCCHH
T ss_pred eccCCCcc
Confidence 88876653
No 191
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=0.00027 Score=69.69 Aligned_cols=121 Identities=11% Similarity=0.073 Sum_probs=86.6
Q ss_pred hhhcCCCccEEEecCC-cccChhHHHH---HhccCCCCCeEeccCccccCCcc--cch-HHHhccccccEEEcCCCCCcc
Q psy17257 194 YILKAPKLRRFSLIGH-TLMSQSICTQ---LYRDMPHLTHLNLSKCMFLFDNK--DLS-FLAEFKDTLVSLVLFNVSIVK 266 (778)
Q Consensus 194 ~~~~l~~L~~L~Ls~~-~l~s~~~l~~---~~~~lp~L~~LdLS~~~i~~~~~--~l~-~L~~l~~~L~~L~L~~~~~~~ 266 (778)
....-+.|+.|+|+++ .+ .+++... .+..-+.|+.|+|++|.+. |.+ .+. .+..- +.|++|+|++|.+.+
T Consensus 36 ll~~n~~L~~L~L~~nn~i-gd~ga~~la~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N-~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRV-SKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETS-PSLRVLNVESNFLTP 112 (197)
T ss_dssp HHTTCSSCCEEECTTCCSS-CHHHHHHHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHC-SSCCEEECCSSBCCH
T ss_pred HHhcCCCccEEECCCCCCC-CHHHHHHHHHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcC-CccCeEecCCCcCCH
Confidence 3467789999999986 77 7766443 4555678999999999997 432 122 24444 689999999999986
Q ss_pred hh----hHhhcCCCCccEEeccCCCC--CCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCCC
Q psy17257 267 DN----LDHICSLPLLRRLDISVSSD--YPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323 (778)
Q Consensus 267 ~~----~~~l~~L~~L~~LdLS~~~~--~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~l 323 (778)
.. .+.+..-+.|++|+|+++.. +++.| ...+...+..-+.|+.|+++.|..
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g------~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV------EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH------HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH------HHHHHHHHHhCCCcCeEeccCCCc
Confidence 43 34566778899999997532 22211 134555678889999999998764
No 192
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.41 E-value=0.00059 Score=69.24 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=118.5
Q ss_pred HHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhh-hhhhhhcccchhHHHHHHHhhccC
Q psy17257 585 VAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAE-VKSLRPKLMTSKFIEVFANLVSSK 663 (778)
Q Consensus 585 ~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niae-v~~l~~~l~~~~~i~~~~~ll~~~ 663 (778)
-+-.++.|++.+.+.+-+..++.||++.+++.|+. +++++|++..+.|.|++. -.+-|..+....-|+.+.++|++.
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~ 106 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT 106 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccC
Confidence 34456889998889888899999999999999985 578999999999999997 467777888889999999999853
Q ss_pred CCCchhhHHHHHHHHHHhccCCCccccccccHHHHHH----HHHHHh----ccCCCCCccceecccchhhHHhhccCCCc
Q psy17257 664 SDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLA----KMVEAI----ERWPIDSERNINYRSFEPIIQLLRVYHTP 735 (778)
Q Consensus 664 ~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~----~~~~~i----~~w~~~~~~~v~yrsf~p~~~ll~~~~~~ 735 (778)
...++..+|+|+|-+|.+.. .-|..+.+ .|+.-+ ..|...+ |-. -.....+
T Consensus 107 -~~~~~~e~a~~aL~nLS~~~--------~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~-----~~~-------~~~~~~~ 165 (233)
T 3tt9_A 107 -RDLETKKQITGLLWNLSSND--------KLKNLMITEALLTLTENIIIPFSGWPEGD-----YPK-------ANGLLDF 165 (233)
T ss_dssp -CCHHHHHHHHHHHHHHHTSG--------GGHHHHHHHHHHHHCCCCCHHHHCCCGGG-----CCC-------CCTTCCH
T ss_pred -CCHHHHHHHHHHHHHHHcCh--------hhHHHHHhccHHHHHHHHhccccCCcccc-----ccc-------ccccchH
Confidence 36899999999999998732 22343433 222111 1232110 000 0013567
Q ss_pred hhhHHHHHHHHHhcccCCccccchhhhh-chHHHHHHHh
Q psy17257 736 ECQHWSVWALANLTKVYPEKYCQVVEAE-GGIELLQNLL 773 (778)
Q Consensus 736 ~~q~wa~wa~~~~~~~~~~~y~~~~~~e-~g~~~l~~~~ 773 (778)
.++-=|++++.|+++.+++ |=+.+.++ |+++-|-.+.
T Consensus 166 ~v~~na~~~L~nLss~~~~-~R~~~r~~~Gli~~Lv~~l 203 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGAD-GRKAMRRCDGLIDSLVHYV 203 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHH-HHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHH-HHHHHHHCCCcHHHHHHHH
Confidence 8999999999999997644 55556655 5556665554
No 193
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.37 E-value=0.00024 Score=78.38 Aligned_cols=201 Identities=9% Similarity=0.106 Sum_probs=104.7
Q ss_pred HhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCc-cccch
Q psy17257 78 DTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFP-DCLES 155 (778)
Q Consensus 78 ~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~-~~~~~ 155 (778)
..|.++ +|+.+.|.+ .++.-+-.++. +.+|+.++++++ +++.-.-..+ .+.+|+.+.|..+-...+ ....
T Consensus 152 ~aF~~~---~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~l~~I~~~aF~- 223 (401)
T 4fdw_A 152 MAFFNS---TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVTLKEIGSQAFL- 223 (401)
T ss_dssp TTTTTC---CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTTCCEECTTTTT-
T ss_pred HhcCCC---CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCchheehhhHhh-
Confidence 456653 688888875 33322223443 678888888876 3432111111 146788888875421111 1100
Q ss_pred hhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCc
Q psy17257 156 EVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKC 235 (778)
Q Consensus 156 ~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~ 235 (778)
.|+....+...-++. .+ ....| .. .+|+.+.+.++ + +.-+ ...+.+|++|+.++++++
T Consensus 224 ------~~~~L~~l~l~~~l~---------~I--~~~aF-~~-~~L~~i~lp~~-i-~~I~-~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 224 ------KTSQLKTIEIPENVS---------TI--GQEAF-RE-SGITTVKLPNG-V-TNIA-SRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp ------TCTTCCCEECCTTCC---------EE--CTTTT-TT-CCCSEEEEETT-C-CEEC-TTTTTTCTTCCEEEEESS
T ss_pred ------CCCCCCEEecCCCcc---------Cc--ccccc-cc-CCccEEEeCCC-c-cEEC-hhHhhCCCCCCEEEeCCc
Confidence 111110000000000 00 11133 33 67888888543 2 1111 125667888999888876
Q ss_pred cccCCc---ccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCC
Q psy17257 236 MFLFDN---KDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH 312 (778)
Q Consensus 236 ~i~~~~---~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~ 312 (778)
.+..+. ..-..+..| ++|+.+.+.+ .+..-....+.+|++|+.++|..+-..-..+ .+..| +
T Consensus 282 ~~~~~~~~~I~~~aF~~c-~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~------------aF~~~-~ 346 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGC-PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANVTQINFS------------AFNNT-G 346 (401)
T ss_dssp CCCCCTTCEECTTTTTTC-TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTCCEECTT------------SSSSS-C
T ss_pred cccCCcccEECHHHhhCC-ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccccEEcHH------------hCCCC-C
Confidence 653000 011246667 6888888874 3433223456778889999886652200112 25677 8
Q ss_pred CCEEeecCCCC
Q psy17257 313 LVSLDISGTNL 323 (778)
Q Consensus 313 L~~LDLSgn~l 323 (778)
|+.|++++|..
T Consensus 347 L~~l~l~~n~~ 357 (401)
T 4fdw_A 347 IKEVKVEGTTP 357 (401)
T ss_dssp CCEEEECCSSC
T ss_pred CCEEEEcCCCC
Confidence 99999998865
No 194
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.71 E-value=0.0015 Score=72.00 Aligned_cols=221 Identities=14% Similarity=0.150 Sum_probs=121.0
Q ss_pred HhhccCCCCceeEEEeeCCccCHHHHHhhccCCccEEecCCCCCCCHhHHHHHHhcCCCCceeecCCCCCCCccccchhh
Q psy17257 78 DTFLTKDITHMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEV 157 (778)
Q Consensus 78 ~~f~~~~~~~L~~L~L~~~~isd~~l~~L~~~~L~~LdLs~~~~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~~~~~~~~ 157 (778)
..|.++ +|+++.|.++ ++.-+-.++...+|+++++... ++.-.- .....|++|+.++++++....-.... +
T Consensus 130 ~aF~~~---~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~~--l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~a--F 200 (401)
T 4fdw_A 130 DAFRNS---QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPST--LEQLKE-DIFYYCYNLKKADLSKTKITKLPAST--F 200 (401)
T ss_dssp TTTTTC---CCSEEECCTT-CCEECTTTTTTCCCCEEECCTT--CCEECS-STTTTCTTCCEEECTTSCCSEECTTT--T
T ss_pred hhcccC---CccEEEeCCC-ccEECHHhcCCCCceEEEeCCC--ccEehH-HHhhCcccCCeeecCCCcceEechhh--E
Confidence 556653 6999999865 3322223444457999999863 321110 12256899999999987654111100 0
Q ss_pred hhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcc-cChhHHHHHhccCCCCCeEeccCcc
Q psy17257 158 VVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTL-MSQSICTQLYRDMPHLTHLNLSKCM 236 (778)
Q Consensus 158 ~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l-~s~~~l~~~~~~lp~L~~LdLS~~~ 236 (778)
. +.....+...-++ ..+ ....| ..|++|+.+.+..+-- +... .+.+ .+|+.+++..+
T Consensus 201 ~----~~~L~~l~lp~~l---------~~I--~~~aF-~~~~~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp~~- 258 (401)
T 4fdw_A 201 V----YAGIEEVLLPVTL---------KEI--GSQAF-LKTSQLKTIEIPENVSTIGQE----AFRE-SGITTVKLPNG- 258 (401)
T ss_dssp T----TCCCSEEECCTTC---------CEE--CTTTT-TTCTTCCCEECCTTCCEECTT----TTTT-CCCSEEEEETT-
T ss_pred e----ecccCEEEeCCch---------hee--hhhHh-hCCCCCCEEecCCCccCcccc----cccc-CCccEEEeCCC-
Confidence 0 0000000000000 001 11234 7788888888876421 1221 2333 67888888543
Q ss_pred ccCCcccc--hHHHhccccccEEEcCCCCCc-----chhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhc
Q psy17257 237 FLFDNKDL--SFLAEFKDTLVSLVLFNVSIV-----KDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK 309 (778)
Q Consensus 237 i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~-----~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~ 309 (778)
++ .+ .++..| ++|+.+.+.++... .-....+.+|++|+.+++.++ + +.-|.. .+..
T Consensus 259 i~----~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~----------aF~~ 321 (401)
T 4fdw_A 259 VT----NIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQG----------LLGG 321 (401)
T ss_dssp CC----EECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTT----------TTTT
T ss_pred cc----EEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhh----------hhcC
Confidence 33 22 246677 68888888776653 112244678888999888854 3 111111 3577
Q ss_pred CCCCCEEeecCCCCCCCccccccCCCCCCCCCccCCccccccccCccceEeeccccCCC
Q psy17257 310 LPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHG 368 (778)
Q Consensus 310 lp~L~~LDLSgn~l~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~L~~L~L~~t~~~ 368 (778)
|++|+.+++..+ +. .+... .|. .. +|+.|.+.++...
T Consensus 322 c~~L~~l~lp~~-l~--~I~~~----------------aF~--~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VT--QINFS----------------AFN--NT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCSCCEEEECTT-CC--EECTT----------------SSS--SS-CCCEEEECCSSCC
T ss_pred CCCccEEEECcc-cc--EEcHH----------------hCC--CC-CCCEEEEcCCCCc
Confidence 889999998655 22 11111 253 34 8999999887643
No 195
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.72 E-value=1.6 Score=52.34 Aligned_cols=305 Identities=10% Similarity=0.116 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCc--C
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFK--I 500 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~--i 500 (778)
++.+..++..++. .+..|+.++..++-+++..-... ........++..++.++.. ++..++++++.+|.+.. .
T Consensus 399 ~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 399 PELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQ-PPDTYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHS-CTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHh
Confidence 5566666666643 23468888888888877642111 1223466788888888853 24567888777765542 1
Q ss_pred CccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhh-hcc
Q psy17257 501 PQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEK-QRC 579 (778)
Q Consensus 501 l~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~-~~~ 579 (778)
..+..--+..+...++..+.... .....+++..++.++..+. ..+.+..+++.++..+.+.... .-.
T Consensus 474 ~~~l~~~l~~ll~~L~~~l~~~~--------~~~~~~~~~ai~~l~~~~~----~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 474 CTELVPYLAYILDTLVFAFSKYQ--------HKNLLILYDAIGTLADSVG----HHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHHG----GGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHhhHhHHHHHHHHHHHHHHHhC--------hHHHHHHHHHHHHHHHHhh----hhhccHHHHHHHHHHHHHHHHhcccc
Confidence 11111123555555666665433 2233344555555543321 1233445666666655543321 101
Q ss_pred chhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhh--------------CC-CcHHHHHHHHhhhhhhhhhh--h
Q psy17257 580 DDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY--------------FP-EKDELLRNMMGLLGNVAEVK--S 642 (778)
Q Consensus 580 d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~--------------f~-~~~~l~~~~lgll~niaev~--~ 642 (778)
+..+..++.++=.+..-....+..|+.. -+..+++.++. +. .+.+++..++.++|.+++.- +
T Consensus 542 ~~~~~~~~~~l~~i~~~~g~~~~~~~~~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~ 620 (852)
T 4fdd_A 542 DKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620 (852)
T ss_dssp CTTHHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHHHhHhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHh
Confidence 1111222222211111111122222221 12222333332 21 25668888999999998653 3
Q ss_pred hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccc
Q psy17257 643 LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSF 722 (778)
Q Consensus 643 l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf 722 (778)
.++.+..+.++..+..++++. .-+|..-|+..++-++...++.+. +-=..++..+...+.
T Consensus 621 ~~~~~~~~~~~~~l~~~l~~~--~~~vr~~a~~~l~~l~~~~~~~~~---~~l~~~lp~l~~~l~--------------- 680 (852)
T 4fdd_A 621 IEQLVARSNILTLMYQCMQDK--MPEVRQSSFALLGDLTKACFQHVK---PCIADFMPILGTNLN--------------- 680 (852)
T ss_dssp GHHHHHTCCHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGTG---GGHHHHHHHHHHTCC---------------
T ss_pred HHHHhcCCcHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHcC---------------
Confidence 445444578888888888773 467877888888887754433332 222345555544441
Q ss_pred hhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhcc
Q psy17257 723 EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 723 ~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
...|.+.-=|+||+.+++..-++.+-+++ ++-++.|-.+.++|
T Consensus 681 ---------~~~~~v~~~a~~alg~i~~~~~~~~~p~~--~~il~~L~~~l~~~ 723 (852)
T 4fdd_A 681 ---------PEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRP 723 (852)
T ss_dssp ---------TTSHHHHHHHHHHHHHHHHHHGGGGGGGT--HHHHHHHHHHHTCS
T ss_pred ---------ccchHHHHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHHHHhCCC
Confidence 12345555788888888775544333333 34444455554444
No 196
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.83 E-value=5.3 Score=47.37 Aligned_cols=231 Identities=12% Similarity=0.087 Sum_probs=125.9
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC------CccccccHHHHH
Q psy17257 439 ERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI------PQDVQFDYDRLV 512 (778)
Q Consensus 439 ~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i------l~~~~f~~~~~~ 512 (778)
+..|+.++..++-.++..-.....+......++..++.++... ..+.++++.+|.+..- ...+.--+..+.
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il 500 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 3456666766777776542111113445778888899888653 4567777766643210 011111134555
Q ss_pred HHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhh----------hccchh
Q psy17257 513 RILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEK----------QRCDDI 582 (778)
Q Consensus 513 ~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~----------~~~d~~ 582 (778)
..++..+...+.+ +.++..++..++.++.....+....+. .++..+++.+.+.... .....+
T Consensus 501 ~~L~~~l~~~d~~------~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~ 572 (861)
T 2bpt_A 501 DGLIGAANRIDNE------FNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572 (861)
T ss_dssp HHHHHHHTCSCCG------GGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhCcCcc------hHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHH
Confidence 5666666543333 568888888888888776543222222 2333344444332100 001122
Q ss_pred HHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhcc
Q psy17257 583 LEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSS 662 (778)
Q Consensus 583 l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~ 662 (778)
...+..++-++....+..+..+++ .-++.+++.++....+ .++..++..+++++++-.-.-.-.-++++..+.+.|.+
T Consensus 573 ~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~ 650 (861)
T 2bpt_A 573 QSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQ 650 (861)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 234444555544444433333333 3456666677654211 68888999999999874321111124567777777755
Q ss_pred CCCCchhhHHHHHHHHHHhccC
Q psy17257 663 KSDGIEVSYNAAGVLSHIASDG 684 (778)
Q Consensus 663 ~~~~~evsy~a~gilahl~~~~ 684 (778)
++-++.--|+++++.++...
T Consensus 651 --~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 651 --VDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp --TTSHHHHHHHHHHHHHHHHT
T ss_pred --ccHHHHHHHHHHHHHHHHHh
Confidence 45567777888888887643
No 197
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.69 E-value=6.4 Score=46.64 Aligned_cols=247 Identities=11% Similarity=0.144 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCC---CCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccC
Q psy17257 422 IEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKD---RPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQF 498 (778)
Q Consensus 422 ~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~---~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~ 498 (778)
.+..+..++.+++.. ..++.+++..+.++++.-. ...+. .-...++..++..+.....+..+...++.+|...
T Consensus 452 ~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~-~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIY-NFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGG-GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhH-HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 577788888887653 5688888999999887632 11222 3356788889998876544445555444433221
Q ss_pred --cCCccccccHHHHHHHHHHHHhhhc-------ccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHH
Q psy17257 499 --KIPQDVQFDYDRLVRILLHIITEME-------HESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRL 569 (778)
Q Consensus 499 --~il~~~~f~~~~~~~~~l~~~~~~~-------~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~ 569 (778)
....+..--...+...+++.+...- .+.++.....++..++..+..++..+..+ +. .++..++..
T Consensus 528 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~--~~~~~l~~~ 601 (861)
T 2bpt_A 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS----VE--PVADMLMGL 601 (861)
T ss_dssp HHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG----TG--GGHHHHHHH
T ss_pred HHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh----hH--HHHHHHHHH
Confidence 1111111112344444555554320 00000000335556667776666665431 11 233444444
Q ss_pred HHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh--hhhcc
Q psy17257 570 IKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS--LRPKL 647 (778)
Q Consensus 570 i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~--l~~~l 647 (778)
+-..+.....+.+-+.++.++=.++.........|+.. -++.++++++ ..++++....+++++.+++.-. +++.
T Consensus 602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~- 677 (861)
T 2bpt_A 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALN--QVDSPVSITAVGFIADISNSLEEDFRRY- 677 (861)
T ss_dssp HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH-HHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGGGGHHH-
T ss_pred HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhchhccch-
Confidence 44333332111233444444444443333323334333 5667777774 2466788889999999886632 2221
Q ss_pred cchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhcc
Q psy17257 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASD 683 (778)
Q Consensus 648 ~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~ 683 (778)
-++++..+.+.|.+....-+|...|+..+++++..
T Consensus 678 -~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 678 -SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp -HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 24556666677776432357777777777777654
No 198
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=93.35 E-value=6.8 Score=46.53 Aligned_cols=249 Identities=12% Similarity=0.155 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCC-------------CCCCChHHHHHHHHHHHHHHhcCCC-chhh
Q psy17257 422 IEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKD-------------RPVLSSLTKRHIITTILNGMHMHLE-DDTM 487 (778)
Q Consensus 422 ~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~-------------~~~~~~~~~~~~i~~LL~am~~~~~-~~~l 487 (778)
.+..+..++..++.. ..|+..++.++..++.... ...+.+ -...++..|+..+..... +..+
T Consensus 449 l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS-SFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp HHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT-THHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH-hHHHHHHHHHHHHhCcCcchhhH
Confidence 577777777777653 5688899999999987522 112322 346788899988876532 2233
Q ss_pred hhhHHhhhccC--cCCccccccHHHHHHHHHHHHhhh---c----ccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh
Q psy17257 488 MRNGCLTLCQF--KIPQDVQFDYDRLVRILLHIITEM---E----HESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG 558 (778)
Q Consensus 488 ~~n~~l~l~~~--~il~~~~f~~~~~~~~~l~~~~~~---~----~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~ 558 (778)
...+..+|... ....+..--...+...++..+... + .|.++...+.++..++..++.++..+..+.....
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~- 603 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI- 603 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT-
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH-
Confidence 33333322211 111111111233333444444321 0 0100000022455667777777777663221111
Q ss_pred hhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhh
Q psy17257 559 RLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638 (778)
Q Consensus 559 ~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~nia 638 (778)
-..++..++++++..... ..+.+-++.++-++.......+..|++ .-++.+..+|+.. +++++....++++|.++
T Consensus 604 ~~~l~~~l~~~l~~~~~~---~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGS---GGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNY-AEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HHHHHHHHHHHC-----C---CHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHC-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC---CCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCc-chHHHHHHHHHHHHHHH
Confidence 123456666665544211 112233333344443333333444444 3567888888865 46778888999999988
Q ss_pred hhh--hhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 639 EVK--SLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 639 ev~--~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
..- .+++. -++.+..+.+.|.+....-++.-.|+..++.++.
T Consensus 679 ~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 679 RALQSNIIPF--CDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHGGGGHHH--HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh--HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 653 23331 2567777778887632334555555555555443
No 199
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.03 E-value=11 Score=40.47 Aligned_cols=162 Identities=11% Similarity=0.199 Sum_probs=86.5
Q ss_pred HHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhh-h-----------------hhcc
Q psy17257 586 AWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS-L-----------------RPKL 647 (778)
Q Consensus 586 ~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~-l-----------------~~~l 647 (778)
+..++-.+.+..|..-..++...-+++++.+++. .++++....+..++++++... + ...+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 3444444444444221122222446666677753 467788999999999988741 0 0111
Q ss_pred cc---hhHHHHHHHhhccC-----CCCchhhHHHHHHHHHHhccCC-----------------CccccccccHHHHHHHH
Q psy17257 648 MT---SKFIEVFANLVSSK-----SDGIEVSYNAAGVLSHIASDGP-----------------EAWTIRYPAREKVLAKM 702 (778)
Q Consensus 648 ~~---~~~i~~~~~ll~~~-----~~~~evsy~a~gilahl~~~~~-----------------~~w~~~~~~r~~~~~~~ 702 (778)
+. +..+..+.+.|... .++-.+..-|+..|..++..-+ +.|. .|+.++..+
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~----~r~aal~~l 390 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR----YRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHH----HHHHHHHHH
T ss_pred HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChH----HHHHHHHHH
Confidence 11 34455555566432 1233566666666666554322 2233 366666666
Q ss_pred HHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCc
Q psy17257 703 VEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE 754 (778)
Q Consensus 703 ~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~ 754 (778)
..-...-+...-+...-.=+.+++++|.. ..|.|+-=|.||+..++...+.
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 54443221111011111223446666664 4599999999999999986543
No 200
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.25 E-value=7.8 Score=45.96 Aligned_cols=291 Identities=11% Similarity=0.139 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcC--
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKI-- 500 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~i-- 500 (778)
++.+..++.+++. .+..|+.++..++-+++..-............++..++.++... ..++.+++.+|.+..-
T Consensus 407 ~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 407 IQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHh
Confidence 4455556666643 23458888999999998764322112345678889999988652 4566666555433210
Q ss_pred -------------Ccc-ccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHH
Q psy17257 501 -------------PQD-VQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKM 566 (778)
Q Consensus 501 -------------l~~-~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~l 566 (778)
..+ ..--+..+...++..+.....+ ...++..++..++.++..+..+.. .++..+
T Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~-----~~~~r~~~~~~l~~l~~~~~~~~~------~~~~~l 550 (876)
T 1qgr_A 482 YEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH-----QNNLRSSAYESLMEIVKNSAKDCY------PAVQKT 550 (876)
T ss_dssp HHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC-----STTHHHHHHHHHHHHHHTCCSTTH------HHHHHH
T ss_pred hhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc-----hhhHHHHHHHHHHHHHHHCchhhH------HHHHHH
Confidence 000 1111355555555555533211 145666677888888777654211 233344
Q ss_pred HHHHHHHHhhh---------ccc-----hhHHHHHHHHHhcccccH-HHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHH
Q psy17257 567 LRLIKDRIEKQ---------RCD-----DILEVAWSAMWNVTDETA-INCARFLNNGGMELFLNCLQYFPEKDELLRNMM 631 (778)
Q Consensus 567 l~~i~~~~~~~---------~~d-----~~l~~~~s~lwn~tde~p-~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~l 631 (778)
+..+-+.+..- .-| .+...+..++-.+....+ .....++ ..-++.+++.++.-.+...++..++
T Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-HHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-HHHHHHHHHHHHhccCCCCccHHHH
Confidence 44333333210 001 111222333333332222 2211222 1223444444443321236788899
Q ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCC
Q psy17257 632 GLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPI 711 (778)
Q Consensus 632 gll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~ 711 (778)
.++++++..-.-.-.-.-+.++..+...|.+. +.-+|.-.|++.++.++....+.+ .+--..++..+...+....
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~i~~~l~~~l~~~~- 704 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRALQSNI---IPFCDEVMQLLLENLGNEN- 704 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHhCCcc-
Confidence 99999997633111111245777778888764 256677788888888876322211 1222455555555443311
Q ss_pred CCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccc
Q psy17257 712 DSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY 756 (778)
Q Consensus 712 ~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y 756 (778)
..+.++--|+||+..++.+.+..+
T Consensus 705 ---------------------~~~~~~~~~~~~l~~i~~~~g~~~ 728 (876)
T 1qgr_A 705 ---------------------VHRSVKPQILSVFGDIALAIGGEF 728 (876)
T ss_dssp ---------------------SCGGGHHHHHHHHHHHHHHHGGGG
T ss_pred ---------------------ccHHhhHHHHHHHHHHHHHhchhH
Confidence 123455667777777766545444
No 201
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.16 E-value=6.3 Score=45.40 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=115.4
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhH-HHHHHHHHhcccccHHHHHHHHhcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDIL-EVAWSAMWNVTDETAINCARFLNNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l-~~~~s~lwn~tde~p~~c~~f~~~~g~ 610 (778)
+.++..|+.-++.++.. .+ ..+. .+...++..+. +. |..+ +.++.++..+.+++.. ... +
T Consensus 327 ~~vr~~aL~~L~~i~~~-~p---~~~~--~~~~~i~~~l~---d~---d~~Ir~~alelL~~l~~~~nv--~~i-----v 387 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQT-DH---NAVQ--RHRSTIVDCLK---DL---DVSIKRRAMELSFALVNGNNI--RGM-----M 387 (618)
T ss_dssp TTTHHHHHHHHHHHHHH-HH---HHHG--GGHHHHHHGGG---SS---CHHHHHHHHHHHHHHCCSSST--HHH-----H
T ss_pred CchHHHHHHHHHHHHhh-CH---HHHH--HHHHHHHHHcc---CC---ChhHHHHHHHHHHHHcccccH--HHH-----H
Confidence 78888888877776653 11 1111 12223333322 11 3333 4577778888876541 222 3
Q ss_pred HHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc
Q psy17257 611 ELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690 (778)
Q Consensus 611 ~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~ 690 (778)
+-+++.+.. .+.++.+.+...+|.+|+.-. + -...++..+.++|... +-.|.+-+.-.+.+++...|
T Consensus 388 ~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~--~--~~~~~v~~ll~lL~~~--~~~v~~~~~~~l~~ii~~~p----- 454 (618)
T 1w63_A 388 KELLYFLDS--CEPEFKADCASGIFLAAEKYA--P--SKRWHIDTIMRVLTTA--GSYVRDDAVPNLIQLITNSV----- 454 (618)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHSSC--C--CHHHHHHHHHHHHHHT--GGGSCSSHHHHHHHHHHHSC-----
T ss_pred HHHHHHHHh--CCHHHHHHHHHHHHHHHHHhC--c--cHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCh-----
Confidence 455555554 478899999999999997421 1 1255789999999874 44677777888888877544
Q ss_pred ccccHHHHHHHHHHHhccCCCCC--ccce-----eccc--------------------chhhHHhhcc-CCCchhhHHHH
Q psy17257 691 RYPAREKVLAKMVEAIERWPIDS--ERNI-----NYRS--------------------FEPIIQLLRV-YHTPECQHWSV 742 (778)
Q Consensus 691 ~~~~r~~~~~~~~~~i~~w~~~~--~~~v-----~yrs--------------------f~p~~~ll~~-~~~~~~q~wa~ 742 (778)
..|+.++..|.+.+......+ .+-+ -|-. +..+..+++. ...|.+|.|++
T Consensus 455 --~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~l 532 (618)
T 1w63_A 455 --EMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYAL 532 (618)
T ss_dssp --STHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 245666777777776532111 1111 1211 1223334444 46899999999
Q ss_pred HHHHHhcccCCc
Q psy17257 743 WALANLTKVYPE 754 (778)
Q Consensus 743 wa~~~~~~~~~~ 754 (778)
||+.-+..+.|+
T Consensus 533 ta~~Kl~~~~~~ 544 (618)
T 1w63_A 533 TAIMKLSTRFTC 544 (618)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHHHhCcc
Confidence 999999998885
No 202
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.13 E-value=12 Score=44.60 Aligned_cols=356 Identities=14% Similarity=0.083 Sum_probs=175.2
Q ss_pred CHHHHHHHHHhcCC-hHHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHhcCCCCCC
Q psy17257 385 NEAQLLIAAKAYID-RPEMLQQVLNDLYHIFRYDTCVDIEHALVVVLEALDT-HLTERHIQISGSANLFYIVKMKDRPVL 462 (778)
Q Consensus 385 ~~~qil~al~~y~~-R~~~~~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~-h~~~~~vq~~gsacL~~L~~~~~~~~~ 462 (778)
+..|+...|+...+ ..+..+.|-..|.++. ..++....++..+.. ...+..++..|.-.|-+..+... ..+
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~------~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w-~~~ 83 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLN------QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF-QNF 83 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-GGC
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH------hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-CCC
Confidence 35677777775543 2233333433333221 124444444444443 23355677777777777776543 246
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchhhhhh---HHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHH
Q psy17257 463 SSLTKRHIITTILNGMHMHLEDDTMMRN---GCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAI 539 (778)
Q Consensus 463 ~~~~~~~~i~~LL~am~~~~~~~~l~~n---~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av 539 (778)
+...+..+-..++.++.. ++ ..+.+. |+-.+....-+.. ...+-..+...+... | +.++..|+
T Consensus 84 ~~~~~~~ik~~ll~~l~~-~~-~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~~~--~------~~~r~~al 149 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGD-SS-PLIRATVGILITTIASKGELQN----WPDLLPKLCSLLDSE--D------YNTCEGAF 149 (852)
T ss_dssp CHHHHHHHHHHHHTTTTC-SS-HHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHSCS--S------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-CC-HHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHcCC--C------HHHHHHHH
Confidence 778888888888888752 22 233322 2333322221111 111222333333321 3 56777778
Q ss_pred HHHHHHhccCCHHHHH-HhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHh
Q psy17257 540 YLLNSLACQVDNAHKI-LLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQ 618 (778)
Q Consensus 540 ~il~~l~~~~s~~~~~-~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~ 618 (778)
.++..++......... .++ ..++.++..+.+.+... ...+-.-+..++.++....+.. + ..-++-+++.+-
T Consensus 150 ~~L~~i~~~~~~~~~~~~~~--~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~---~--~~~~~~~l~~l~ 221 (852)
T 4fdd_A 150 GALQKICEDSAEILDSDVLD--RPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQA---L--MLHIDSFIENLF 221 (852)
T ss_dssp HHHHHHHHHHTTHHHHCSSS--SCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHH---H--HTSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhchhhhc--chHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHH---H--HHHHHHHHHHHH
Confidence 7777776555433111 111 12333333332222221 1122233455566655444422 1 112233333332
Q ss_pred hC--CCcHHHHHHHHhhhhhhhhhhh--hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccccccc
Q psy17257 619 YF--PEKDELLRNMMGLLGNVAEVKS--LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPA 694 (778)
Q Consensus 619 ~f--~~~~~l~~~~lgll~niaev~~--l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~ 694 (778)
.. .+++++...++..|+++++... +++.+ ++.+..+..++.+ .+-+|...|+..+..++.. +..|..-.|.
T Consensus 222 ~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~-~~~~~~~~~~ 296 (852)
T 4fdd_A 222 ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ-PICKDVLVRH 296 (852)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS-TTHHHHHTTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcc-hhHHHHHHHH
Confidence 21 3467788889999999998632 44421 3467777777776 4567889998888877652 2333322232
Q ss_pred HHHHHHHHHHHhc-----------cCCCCCc----------cceec------------ccchhhHHhhcc---CCCchhh
Q psy17257 695 REKVLAKMVEAIE-----------RWPIDSE----------RNINY------------RSFEPIIQLLRV---YHTPECQ 738 (778)
Q Consensus 695 r~~~~~~~~~~i~-----------~w~~~~~----------~~v~y------------rsf~p~~~ll~~---~~~~~~q 738 (778)
-..++..+...+. ..+..+. |..+. .-+.++++.+.. ...+.+.
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R 376 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVK 376 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHH
Confidence 2333333333331 0000000 00000 012334444432 4568889
Q ss_pred HHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhcc
Q psy17257 739 HWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNE 776 (778)
Q Consensus 739 ~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~~ 776 (778)
.=|+||+..+++.-++..-+. -++.++.|-....++
T Consensus 377 ~aa~~alg~i~~~~~~~~~~~--l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 377 ESGILVLGAIAEGCMQGMIPY--LPELIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHHTTTTTHHHHGGG--HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHcCCC
Confidence 999999999998655433332 244556555555554
No 203
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.56 E-value=0.92 Score=53.21 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=63.4
Q ss_pred HHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCC-CcHHHHHHHHhhhhhhhhh-hhhhhcccchh---HHHHHHH
Q psy17257 584 EVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFP-EKDELLRNMMGLLGNVAEV-KSLRPKLMTSK---FIEVFAN 658 (778)
Q Consensus 584 ~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~-~~~~l~~~~lgll~niaev-~~l~~~l~~~~---~i~~~~~ 658 (778)
+-+++++|++.+-+.++-..+.+.+++..++..|.... ...+++..++..|.+++|- .++-..+.... .+..+..
T Consensus 158 ~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~ 237 (684)
T 4gmo_A 158 GSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK 237 (684)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH
Confidence 33668899999999999999999999999999986543 3467899999999988774 22222222222 2223333
Q ss_pred hhccCCCCchhhHHHHHHHHHHh
Q psy17257 659 LVSSKSDGIEVSYNAAGVLSHIA 681 (778)
Q Consensus 659 ll~~~~~~~evsy~a~gilahl~ 681 (778)
+-.+ ..-..=.|||||..+.
T Consensus 238 ~~~~---~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 238 LATG---TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHS---SCTTHHHHHHHHHHHH
T ss_pred HhcC---CcHHHHHHHHHHHhHh
Confidence 2223 2223446889988774
No 204
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.34 E-value=9.7 Score=38.36 Aligned_cols=187 Identities=11% Similarity=0.061 Sum_probs=98.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+..+..+... ...+..++..+.+....+-...+-..+..+|-++....|.. ....++
T Consensus 68 ~~vR~~A~~aL~~l~~~-----------~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~ 131 (280)
T 1oyz_A 68 YIRRDIGAFILGQIKIC-----------KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVE 131 (280)
T ss_dssp HHHHHHHHHHHHHSCCC-----------TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHH
T ss_pred HHHHHHHHHHHHHhccc-----------cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHH
Confidence 66777777776544321 12234455555433222111222233444455544222211 112355
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc-
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI- 690 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~- 690 (778)
.+.+.+. ..++.+.......||++.. ++.+..+..+|.+ ++-+|.+.|+..|+.+..+++++...
T Consensus 132 ~L~~~l~--d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~~~L 197 (280)
T 1oyz_A 132 QSQITAF--DKSTNVRRATAFAISVIND----------KATIPLLINLLKD--PNGDVRNWAAFAININKYDNSDIRDCF 197 (280)
T ss_dssp HHHHHTT--CSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5666665 2467777788888887763 3467788888887 46789999999998885333222110
Q ss_pred ----cc---ccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhh
Q psy17257 691 ----RY---PAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAE 763 (778)
Q Consensus 691 ----~~---~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e 763 (778)
.+ .-|..+...| -+.. .-+...++..+|+. |.+..-|+||+..+-. +
T Consensus 198 ~~~l~d~~~~vR~~A~~aL----~~~~-------~~~~~~~L~~~l~d---~~vr~~a~~aL~~i~~------------~ 251 (280)
T 1oyz_A 198 VEMLQDKNEEVRIEAIIGL----SYRK-------DKRVLSVLCDELKK---NTVYDDIIEAAGELGD------------K 251 (280)
T ss_dssp HHHTTCSCHHHHHHHHHHH----HHTT-------CGGGHHHHHHHHTS---SSCCHHHHHHHHHHCC------------G
T ss_pred HHHhcCCCHHHHHHHHHHH----HHhC-------CHhhHHHHHHHhcC---ccHHHHHHHHHHhcCc------------h
Confidence 01 1233332322 2211 12344566666654 5588888888887743 2
Q ss_pred chHHHHHHHhh
Q psy17257 764 GGIELLQNLLD 774 (778)
Q Consensus 764 ~g~~~l~~~~~ 774 (778)
..++.|.++..
T Consensus 252 ~~~~~L~~~l~ 262 (280)
T 1oyz_A 252 TLLPVLDTMLY 262 (280)
T ss_dssp GGHHHHHHHHT
T ss_pred hhhHHHHHHHh
Confidence 45666666554
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.72 E-value=1.1 Score=48.59 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=60.4
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..|++|+.+.+..... +- + ...+.++++|+.+++...-...+ -.++..| .+|+++.+... ++.-.-..+.+|
T Consensus 262 ~~c~~L~~i~lp~~~~-~I-~-~~aF~~c~~L~~i~l~~~i~~I~---~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVV-SI-G-TGAFMNCPALQDIEFSSRITELP---ESVFAGC-ISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTCSSCCEEECCTTCC-EE-C-TTTTTTCTTCCEEECCTTCCEEC---TTTTTTC-TTCCEEECCTT-CCEECTTTTTTC
T ss_pred eecccccEEecccccc-ee-c-CcccccccccccccCCCcccccC---ceeecCC-CCcCEEEeCCc-ccEehHhHhhCC
Confidence 6677778777765432 11 1 11455677888887764321101 1245566 67888877542 222112346677
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTN 322 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn~ 322 (778)
++|+.+.|..+- +.-|.. .+.+|++|+.++++++.
T Consensus 334 ~~L~~i~ip~sv--~~I~~~----------aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSSV--TKIPES----------AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTTC--CBCCGG----------GGTTCTTCCEEEESSCH
T ss_pred CCCCEEEECccc--CEEhHh----------HhhCCCCCCEEEECCce
Confidence 888888876542 111111 36778888888887765
No 206
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.46 E-value=0.8 Score=49.57 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=105.5
Q ss_pred hHhhccCCCCceeEEEeeCCccCHHHHHhhc-cCCccEEecCCCC-CCCHhHHHHHHhcCCCCceeecCCCCCCCc-ccc
Q psy17257 77 VDTFLTKDITHMKSVKLRNAEVSDSGMQKLL-SHHVQELELIKCA-NVSQASLEVLNMSSDQLYSLSLGPHCSMFP-DCL 153 (778)
Q Consensus 77 ~~~f~~~~~~~L~~L~L~~~~isd~~l~~L~-~~~L~~LdLs~~~-~lt~~~l~~L~~~~~~L~~L~Ls~c~~~~~-~~~ 153 (778)
-..|.++ .+|+++.|.+. ++.-+-.++. +.+|+++++..+- .+... ....|++|+.+.+...-.... ...
T Consensus 64 ~~AF~~c--~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 64 YAAFQGC--RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp TTTTTTC--TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred HHHhhCC--CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhcccCceeeecceee
Confidence 3567765 68999999743 3332223454 5789999886541 22221 124567777776654321110 000
Q ss_pred chhhhhccccccccccccchhhhcccCCCCCCCcccchhhhhhcCCCccEEEecCCcccChhHHHHHhccCCCCCeEecc
Q psy17257 154 ESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLS 233 (778)
Q Consensus 154 ~~~~~l~e~~p~~~~l~~d~~l~i~~~~~~~g~l~~~~~~~~~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS 233 (778)
. .+....... ..+........| ..|++|+.+.+.++.. +- + ...+.++++|+.+++.
T Consensus 137 ~-------~~~~~~~~~------------~~~~~~i~~~aF-~~c~~L~~i~l~~~~~-~I-~-~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 137 K-------GCDFKEITI------------PEGVTVIGDEAF-ATCESLEYVSLPDSME-TL-H-NGLFSGCGKLKSIKLP 193 (394)
T ss_dssp T-------TCCCSEEEC------------CTTCCEECTTTT-TTCTTCCEEECCTTCC-EE-C-TTTTTTCTTCCBCCCC
T ss_pred e-------ccccccccc------------Cccccccchhhh-cccCCCcEEecCCccc-ee-c-cccccCCCCceEEEcC
Confidence 0 000000000 000000011234 7889999999976532 11 1 1256788999999998
Q ss_pred CccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCC
Q psy17257 234 KCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHL 313 (778)
Q Consensus 234 ~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L 313 (778)
.+-...+ -.++..+ ..|+.+.+.+.... +........+|+.+.+..... .-|.. .+..++.|
T Consensus 194 ~~~~~I~---~~~F~~~-~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~~--~i~~~----------~f~~~~~l 255 (394)
T 4fs7_A 194 RNLKIIR---DYCFAEC-ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSFT--ELGKS----------VFYGCTDL 255 (394)
T ss_dssp TTCCEEC---TTTTTTC-TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTCC--EECSS----------TTTTCSSC
T ss_pred CCceEeC---chhhccc-cccceeecCCCceE--eehhhcccCCCceEEECCCce--ecccc----------cccccccc
Confidence 6632201 1245566 67887777654432 122244567888888875533 11111 25778899
Q ss_pred CEEeecCCC
Q psy17257 314 VSLDISGTN 322 (778)
Q Consensus 314 ~~LDLSgn~ 322 (778)
+.+.+..+.
T Consensus 256 ~~~~~~~~~ 264 (394)
T 4fs7_A 256 ESISIQNNK 264 (394)
T ss_dssp CEEEECCTT
T ss_pred eeEEcCCCc
Confidence 999987764
No 207
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.76 E-value=16 Score=34.59 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++..|+..+..+ +....+..+++.++.. ...+-..+..+|..+.+ ..+++
T Consensus 28 ~~vr~~A~~~L~~~------------~~~~~~~~L~~~l~~~-----~~~vr~~a~~~L~~~~~-----------~~~~~ 79 (201)
T 3ltj_A 28 YYVRRAAAYALGKI------------GDERAVEPLIKALKDE-----DAWVRRAAADALGQIGD-----------ERAVE 79 (201)
T ss_dssp HHHHHHHHHHHHHH------------CCGGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-----------GGGHH
T ss_pred HHHHHHHHHHHHhc------------CChhHHHHHHHHHcCC-----CHHHHHHHHHHHHhhCC-----------HHHHH
Confidence 66777777666433 2234555555555321 01222334444544432 24567
Q ss_pred HHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHh
Q psy17257 612 LFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIA 681 (778)
Q Consensus 612 ~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~ 681 (778)
.+.+.|.. .++.++...+..||++.. ++.+..+.++|.+ +.-+|...|+..|+.+.
T Consensus 80 ~L~~~l~d--~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 80 PLIKALKD--EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD--EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHTTC--SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC
Confidence 77777763 467788888888887642 4567788888876 46789999999988874
No 208
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.60 E-value=4.7 Score=46.23 Aligned_cols=195 Identities=12% Similarity=0.152 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHHHhccCCH-HHHHHhhhhhhHHHHHHHHHHHHhhhccchhH-HHHHHHHHhcccccHHHHHHHHhcCC
Q psy17257 532 NFVLRIAIYLLNSLACQVDN-AHKILLGRLGVIKKMLRLIKDRIEKQRCDDIL-EVAWSAMWNVTDETAINCARFLNNGG 609 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~-~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l-~~~~s~lwn~tde~p~~c~~f~~~~g 609 (778)
..++-.++.++..+...-.. -|...+...+-+..++.++++.- +.+ --++.+|-++|..+++.-+-+.-+||
T Consensus 136 f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r------E~iRneallLL~~Lt~~n~~iQklVAFEna 209 (651)
T 3grl_A 136 FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR------EVIRNDGVLLLQALTRSNGAIQKIVAFENA 209 (651)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch------HHHHHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 67888888999877666333 36667777788899998887542 222 12455588899999998888888899
Q ss_pred hHHHHHHHhhC--CCcHHHHHHHHhhhhhhhhhhhhhhcccc-hhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCC
Q psy17257 610 MELFLNCLQYF--PEKDELLRNMMGLLGNVAEVKSLRPKLMT-SKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE 686 (778)
Q Consensus 610 ~~~~~~~l~~f--~~~~~l~~~~lgll~niaev~~l~~~l~~-~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~ 686 (778)
++.+++.++.= -+...++..+|.++.|++..--.-..++. ..++..+..+|.... + ..
T Consensus 210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~---~----------------~~ 270 (651)
T 3grl_A 210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD---E----------------NS 270 (651)
T ss_dssp HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS---C----------------SS
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc---c----------------cc
Confidence 99999999852 22446778999999999865322222222 455666667775421 1 12
Q ss_pred ccccccccHHHHHHHHHHHhccCCCCCccc----------eecccchhhHHhhccCCCch-hhHHHHHHHHHhcccCCc
Q psy17257 687 AWTIRYPAREKVLAKMVEAIERWPIDSERN----------INYRSFEPIIQLLRVYHTPE-CQHWSVWALANLTKVYPE 754 (778)
Q Consensus 687 ~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~----------v~yrsf~p~~~ll~~~~~~~-~q~wa~wa~~~~~~~~~~ 754 (778)
.|+ .+|-.-+--+...|+-.=.+...+ ...-=..|+++|+-....|. +..=|+=|++.+.+.||.
T Consensus 271 ~W~---~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 271 GWS---AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp CCC---HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccH---HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 454 222211111112222222221111 11112367788887666554 556677788888887764
No 209
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=85.26 E-value=31 Score=38.36 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=104.3
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhH-HHHHHHHHhcccccHHHHHHHHhcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDIL-EVAWSAMWNVTDETAINCARFLNNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l-~~~~s~lwn~tde~p~~c~~f~~~~g~ 610 (778)
+.++..|+..+..++..+++++. .+.++..+..-...+ +... ..+..++..+....+... ...-+
T Consensus 101 ~~vR~~a~~~L~~l~~~~~~~~~--------~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~~~~~~~----~~~l~ 166 (588)
T 1b3u_A 101 TVVRDKAVESLRAISHEHSPSDL--------EAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVSSAV----KAELR 166 (588)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHH--------HHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSCHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHH--------HHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhcCHHH----HHHHH
Confidence 77889999999998888876432 123344443333221 1111 111122222322222211 12223
Q ss_pred HHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccC------
Q psy17257 611 ELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG------ 684 (778)
Q Consensus 611 ~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~------ 684 (778)
..+.+.+. ..++++...+...+|.++++.. +....++.+..+..++.+ +.-+|..-|+..|..++..-
T Consensus 167 ~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~ 240 (588)
T 1b3u_A 167 QYFRNLCS--DDTPMVRRAAASKLGEFAKVLE--LDNVKSEIIPMFSNLASD--EQDSVRLLAVEACVNIAQLLPQEDLE 240 (588)
T ss_dssp HHHHHHHT--CSCHHHHHHHHHHHHHHHHTSC--HHHHHHTHHHHHHHHHTC--SCHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHHHHhc--HHhHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444443 3467788889999999987632 222345677888888877 35677777777776665421
Q ss_pred ------------CCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccC
Q psy17257 685 ------------PEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVY 752 (778)
Q Consensus 685 ------------~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~ 752 (778)
.+.|.+ |..+.+.+..-....+. +.+.-.-+..+..+++ ...|.+.--|++|+..++...
T Consensus 241 ~~~~~~l~~~~~d~~~~v----R~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 241 ALVMPTLRQAAEDKSWRV----RYMVADKFTELQKAVGP---EITKTDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHTHHHHHHHHTCSSHHH----HHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCCCHHH----HHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHh
Confidence 122332 34333333222221111 0000011334455555 467889999999999999866
Q ss_pred Cc
Q psy17257 753 PE 754 (778)
Q Consensus 753 ~~ 754 (778)
+.
T Consensus 313 ~~ 314 (588)
T 1b3u_A 313 SA 314 (588)
T ss_dssp CT
T ss_pred Ch
Confidence 54
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.85 E-value=1.9 Score=46.53 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=54.2
Q ss_pred HhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCCCCccEEeccCCCCCCCCCCCCCCc
Q psy17257 220 LYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNP 299 (778)
Q Consensus 220 ~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L~~L~~LdLS~~~~~~~~g~~~~~p 299 (778)
.+..|++|+.+++..+....+ -.++..+ ++|+.+.+.. .+..-....+.+|++|+.++|..+-. .-|..
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~---~~aF~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~--~I~~~---- 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIG---TGAFMNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPEGIT--QILDD---- 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEEC---TTTTTTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC--EECTT----
T ss_pred eeeecccccEEecccccceec---Ccccccc-cccccccCCC-cccccCceeecCCCCcCEEEeCCccc--EehHh----
Confidence 466788999999876554312 1245666 6899888853 22221223467889999999976521 11111
Q ss_pred hhhHHHHHhcCCCCCEEeecCC
Q psy17257 300 NDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 300 ~~~L~~~~~~lp~L~~LDLSgn 321 (778)
.+..|.+|+.+.|..+
T Consensus 329 ------aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 329 ------AFAGCEQLERIAIPSS 344 (394)
T ss_dssp ------TTTTCTTCCEEEECTT
T ss_pred ------HhhCCCCCCEEEECcc
Confidence 3678899999999654
No 211
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.38 E-value=1.9 Score=46.52 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=67.2
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+++|+.+......+ .+ ..+..+++|+.+.+..+ ++ .+ .++..| .+|+++.+.+. +..-....+.
T Consensus 273 ~~~~~l~~~~~~~~~i-~~----~~F~~~~~L~~i~l~~~-i~----~I~~~aF~~c-~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIV-PE----KTFYGCSSLTEVKLLDS-VK----FIGEEAFESC-TSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp TTCTTCCEEEECSSEE-CT----TTTTTCTTCCEEEECTT-CC----EECTTTTTTC-TTCCEECCCTT-CCEECTTTTT
T ss_pred ccccccceeccCceee-cc----ccccccccccccccccc-cc----eechhhhcCC-CCCCEEEeCCc-ccEEhHHhcc
Confidence 6778888887776655 33 14567889999988765 32 22 246677 68999988643 3222234577
Q ss_pred CCCCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
+|++|+.+++..+-. .-|.. .+..|++|+.+++..+
T Consensus 341 ~c~~L~~i~lp~~l~--~I~~~----------aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 341 GCTSLSNINFPLSLR--KIGAN----------AFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTTCC--EECTT----------TBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEECcccc--EehHH----------HhhCCCCCCEEEECCC
Confidence 899999999976621 11111 3678999999999765
No 212
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=83.84 E-value=29 Score=39.40 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCc-
Q psy17257 423 EHALVVVLEALDTHLTE--RHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFK- 499 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~--~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~- 499 (778)
+|.+.+++.++++-..+ ..++..|..+|-++. +....+.++..+..++. ++ +..+.|....+|....
T Consensus 81 ~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------~~~~~~~l~~~l~~~L~-d~-~~~VRk~A~~al~~i~~ 150 (591)
T 2vgl_B 81 PDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--------VDKITEYLCEPLRKCLK-DE-DPYVRKTAAVCVAKLHD 150 (591)
T ss_dssp HHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------SGGGHHHHHHHHHHHSS-CS-CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHcC-CC-ChHHHHHHHHHHHHHHh
Confidence 34444455555553333 234433433333321 33344555555655553 33 4456666555443221
Q ss_pred -CCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhh-hhhhHHHHHHHHHHHHhhh
Q psy17257 500 -IPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLG-RLGVIKKMLRLIKDRIEKQ 577 (778)
Q Consensus 500 -il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~-~~~~~~~ll~~i~~~~~~~ 577 (778)
-++.++ ...+...+...+. +.| +.++.-|+..+..+...- ++.. .+. ....+..+++.+..
T Consensus 151 ~~p~~~~--~~~~~~~l~~lL~--d~d------~~V~~~A~~aL~~i~~~~-~~~~-~~~l~~~~~~~Ll~~l~~----- 213 (591)
T 2vgl_B 151 INAQMVE--DQGFLDSLRDLIA--DSN------PMVVANAVAALSEISESH-PNSN-LLDLNPQNINKLLTALNE----- 213 (591)
T ss_dssp SSCCCHH--HHHHHHHHHHTTS--CSC------HHHHHHHHHHHHHHTTSC-CSCC-SCCCHHHHHHHHHHHHHH-----
T ss_pred hChhhcc--cccHHHHHHHHhC--CCC------hhHHHHHHHHHHHHHhhC-CCcc-chhccHHHHHHHHHcCCC-----
Confidence 121111 1223333334332 224 778888888887765542 2110 111 22445556655542
Q ss_pred ccchhH-HHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh----hhhhhcccchhH
Q psy17257 578 RCDDIL-EVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV----KSLRPKLMTSKF 652 (778)
Q Consensus 578 ~~d~~l-~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev----~~l~~~l~~~~~ 652 (778)
++..+ -.++.++-++.-+.+..- .+.++.+..+|+. .++++.......++.++.. .+.-.. +-...
T Consensus 214 -~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~--~~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~ 284 (591)
T 2vgl_B 214 -CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSH--ANSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKL 284 (591)
T ss_dssp -CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCS--STTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHT
T ss_pred -CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHH
Confidence 12222 224445555553333321 1223333333332 3456777766776666531 121111 11233
Q ss_pred HHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCcccc---------ccc--cHHHHHHHHHHHhccCCCCCccceeccc
Q psy17257 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI---------RYP--AREKVLAKMVEAIERWPIDSERNINYRS 721 (778)
Q Consensus 653 i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~---------~~~--~r~~~~~~~~~~i~~w~~~~~~~v~yrs 721 (778)
...+..++. .+-+|.|-|...|+.++...|+.-.. .++ -|...++-+.. + ++-..
T Consensus 285 ~~~L~~L~~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~-l----------~~~~n 350 (591)
T 2vgl_B 285 APPLVTLLS---GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIR-L----------ASQAN 350 (591)
T ss_dssp HHHHHHHTT---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHH-T----------CCSST
T ss_pred HHHHHHHhc---CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHH-H----------CChhh
Confidence 444455554 36799999999999999866655421 111 34444443322 2 22223
Q ss_pred chhhHHhhccC---CCchhhHHHHHHHHHhcccCCc
Q psy17257 722 FEPIIQLLRVY---HTPECQHWSVWALANLTKVYPE 754 (778)
Q Consensus 722 f~p~~~ll~~~---~~~~~q~wa~wa~~~~~~~~~~ 754 (778)
.+.+++-|..| ..++..-=|+|||..+|.++|.
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence 35566655544 3577888899999999999984
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.76 E-value=2.1 Score=45.77 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=63.9
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccchHHHhccccccEEEcCCCCCcchhhHhhcCC
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL 275 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l~~L~~l~~~L~~L~L~~~~~~~~~~~~l~~L 275 (778)
..+++|+.+.+..+ + +.-+ ...+.++.+|+.+++..+-... .-..+..| .+|+.+.+.++.+..-....+.+|
T Consensus 237 ~~~~~L~~i~lp~~-v-~~I~-~~aF~~~~~l~~i~l~~~i~~i---~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c 309 (379)
T 4h09_A 237 YGMKALDEIAIPKN-V-TSIG-SFLLQNCTALKTLNFYAKVKTV---PYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDC 309 (379)
T ss_dssp TTCSSCCEEEECTT-C-CEEC-TTTTTTCTTCCEEEECCCCSEE---CTTTTTTC-TTCCEEEECCTTCCEECTTTTTTC
T ss_pred cCCccceEEEcCCC-c-cEeC-ccccceeehhccccccccceec---cccccccc-cccccccccccccceehhhhhcCC
Confidence 67778888888654 2 1111 1145677888888886542220 11245566 688888887665543233456778
Q ss_pred CCccEEeccCCCCCCCCCCCCCCchhhHHHHHhcCCCCCEEeecCC
Q psy17257 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT 321 (778)
Q Consensus 276 ~~L~~LdLS~~~~~~~~g~~~~~p~~~L~~~~~~lp~L~~LDLSgn 321 (778)
++|+.++|..+-. .-|.. .+.+|++|+.+.+..+
T Consensus 310 ~~L~~i~lp~~l~--~I~~~----------aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 310 VKLSSVTLPTALK--TIQVY----------AFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCCEEECCTTCC--EECTT----------TTTTCTTCCCCCCCTT
T ss_pred CCCCEEEcCcccc--EEHHH----------HhhCCCCCCEEEECCc
Confidence 8888888865421 11111 2567888888877543
No 214
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=81.72 E-value=25 Score=39.14 Aligned_cols=139 Identities=9% Similarity=0.129 Sum_probs=81.3
Q ss_pred cHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHH
Q psy17257 623 KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKM 702 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~ 702 (778)
+..++..++..++.+++. +.+..+.+..+..+..+|.+ +.-+|...|+..++.++..-+..|. .+.++..+
T Consensus 415 ~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~-----~~~llp~l 485 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQ--LGVEFFDEKLNSLCMAWLVD--HVYAIREAATSNLKKLVEKFGKEWA-----HATIIPKV 485 (588)
T ss_dssp SHHHHHHHHHHHHHHHHH--HCGGGCCHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHCHHHH-----HHHTHHHH
T ss_pred CchHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCchhH-----HHHHHHHH
Confidence 455777788888888854 33345567788889999987 3578999999999888764222332 22333333
Q ss_pred HHHhccCCCCCcccee---------------c-ccc-hhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhch
Q psy17257 703 VEAIERWPIDSERNIN---------------Y-RSF-EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGG 765 (778)
Q Consensus 703 ~~~i~~w~~~~~~~v~---------------y-rsf-~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g 765 (778)
...... +....|..+ | ..+ .++..++. ...|.++.-|+||+..++...+..+ ..+.-
T Consensus 486 ~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~ 559 (588)
T 1b3u_A 486 LAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFNVAKSLQKIGPILDNST----LQSEV 559 (588)
T ss_dssp HHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHHHHHHHHHHGGGSCHHH----HHHHH
T ss_pred HHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC-CCCchHHHHHHHHHHHHHHHhchhh----hHHHH
Confidence 322110 000000000 1 111 22333333 4568999999999999998765543 22455
Q ss_pred HHHHHHHhhcc
Q psy17257 766 IELLQNLLDNE 776 (778)
Q Consensus 766 ~~~l~~~~~~~ 776 (778)
.+.|..+.+++
T Consensus 560 ~p~l~~l~~d~ 570 (588)
T 1b3u_A 560 KPILEKLTQDQ 570 (588)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHcCCC
Confidence 56666665554
No 215
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.61 E-value=7.7 Score=39.11 Aligned_cols=63 Identities=10% Similarity=-0.036 Sum_probs=49.4
Q ss_pred hcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 606 NNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 606 ~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
....++.+++.|+. .++.++......||++. .++.+..+.++|++ ++-+|...|+..|+.+..
T Consensus 21 ~~~~i~~L~~~L~~--~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 21 KKLNDDELFRLLDD--HNSLKRISSARVLQLRG----------GQDAVRLAIEFCSD--KNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp HTSCHHHHHHHTTC--SSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHSCC
T ss_pred HHhhHHHHHHHHHc--CCHHHHHHHHHHHHccC----------CchHHHHHHHHHcC--CCHHHHHHHHHHHHHhcc
Confidence 55678888888873 46778888888888876 25678888899987 467899999999988754
No 216
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=81.61 E-value=4.3 Score=47.41 Aligned_cols=149 Identities=14% Similarity=0.139 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcc-cccHHHHHHHHhcCCh
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT-DETAINCARFLNNGGM 610 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~t-de~p~~c~~f~~~~g~ 610 (778)
+..+.+|..-++.++. +++....+.+.+.|..++..+ + .+....+.+-++.+|.|+. ++-++.|...++.+++
T Consensus 48 ~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~l---L-~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il 121 (684)
T 4gmo_A 48 AKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTET---L-TDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVL 121 (684)
T ss_dssp CSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTT---T-TCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHH---c-CCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChH
Confidence 7789999988888873 566555555666665544421 1 1122455666889999986 4569999999999999
Q ss_pred HHHHHHHhhCCCc-------------------HHHHHHHHhhhhhhhhhhh-hhhcccchhHHHHHHHhhc-cCCCCchh
Q psy17257 611 ELFLNCLQYFPEK-------------------DELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVS-SKSDGIEV 669 (778)
Q Consensus 611 ~~~~~~l~~f~~~-------------------~~l~~~~lgll~niaev~~-l~~~l~~~~~i~~~~~ll~-~~~~~~ev 669 (778)
.-+...|++..+. .++..+++.+|.+++|... ....+...+.+..+..+|. ......+|
T Consensus 122 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v 201 (684)
T 4gmo_A 122 TAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDI 201 (684)
T ss_dssp HHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHH
T ss_pred HHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHH
Confidence 9988888653210 1345678999999998743 3445556677777777764 33346789
Q ss_pred hHHHHHHHHHHhccCCC
Q psy17257 670 SYNAAGVLSHIASDGPE 686 (778)
Q Consensus 670 sy~a~gilahl~~~~~~ 686 (778)
.-.|+..|..+.+|.++
T Consensus 202 ~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 202 YEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhccCHH
Confidence 99999999999887544
No 217
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.17 E-value=1.4 Score=39.81 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=7.3
Q ss_pred CCCCccEEeccCCCC
Q psy17257 274 SLPLLRRLDISVSSD 288 (778)
Q Consensus 274 ~L~~L~~LdLS~~~~ 288 (778)
.+++|++|+|++|+.
T Consensus 53 ~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 53 ALPALRTAHLGANPW 67 (130)
T ss_dssp GCTTCCEEECCSSCC
T ss_pred hccccCEEEecCCCe
Confidence 344455555555544
No 218
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.72 E-value=17 Score=34.72 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=35.8
Q ss_pred CChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHh
Q psy17257 608 GGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIA 681 (778)
Q Consensus 608 ~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~ 681 (778)
.+++.+++.|.. .++.+.......||++. .++.+..+.++|.+ ++-+|.+.|+..|+.+.
T Consensus 50 ~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 50 RAVEPLIKALKD--EDAWVRRAAADALGQIG----------DERAVEPLIKALKD--EDGWVRQSAAVALGQIG 109 (211)
T ss_dssp GGHHHHHHHTTC--SCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHcC--CCHHHHHHHHHHHHhhC----------CHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC
Confidence 445666666652 35556666666666654 13456666666665 34567777777776663
No 219
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.03 E-value=10 Score=36.35 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=86.7
Q ss_pred hcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCC
Q psy17257 606 NNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGP 685 (778)
Q Consensus 606 ~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~ 685 (778)
+.+.++.+++.|+ ..++.+....+..|+.+.. ++.+..+.++|.+ +.-+|...|+..|+.+...
T Consensus 17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~-- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIGDE-- 80 (211)
T ss_dssp CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCG--
T ss_pred CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCH--
Confidence 4566788888887 3577788888888887653 4668888899987 4688999999999988531
Q ss_pred Ccccc-----cc---ccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCcccc
Q psy17257 686 EAWTI-----RY---PAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYC 757 (778)
Q Consensus 686 ~~w~~-----~~---~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~ 757 (778)
++... .+ .-|..+...|.. ... -....++..+|. ...|.++..|+||+..+..
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~----~~~-------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~------- 141 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQ----IGD-------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD------- 141 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHH----HCC-------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----hCc-------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCC-------
Confidence 12111 11 123444333322 111 134466777774 6788999999999998843
Q ss_pred chhhhhchHHHHHHHhhccC
Q psy17257 758 QVVEAEGGIELLQNLLDNEN 777 (778)
Q Consensus 758 ~~~~~e~g~~~l~~~~~~~~ 777 (778)
+..++.|..+.++++
T Consensus 142 -----~~~~~~L~~~l~d~~ 156 (211)
T 3ltm_A 142 -----ERAVEPLIKALKDED 156 (211)
T ss_dssp -----GGGHHHHHHHTTCSS
T ss_pred -----HHHHHHHHHHHcCCC
Confidence 346677777766653
No 220
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.85 E-value=2.1 Score=38.62 Aligned_cols=54 Identities=19% Similarity=0.079 Sum_probs=34.1
Q ss_pred EEEecCCcccChhHHHHHhccCC-CCCeEeccCccccCCcccch--HHHhccccccEEEcCCCCCc
Q psy17257 203 RFSLIGHTLMSQSICTQLYRDMP-HLTHLNLSKCMFLFDNKDLS--FLAEFKDTLVSLVLFNVSIV 265 (778)
Q Consensus 203 ~L~Ls~~~l~s~~~l~~~~~~lp-~L~~LdLS~~~i~~~~~~l~--~L~~l~~~L~~L~L~~~~~~ 265 (778)
.++.+++.+ +... +-..+| +|+.|||++|.++ .++ .+..+ ++|+.|.|.+|.+.
T Consensus 12 ~v~Cs~~~L-~~~~---vP~~lp~~l~~L~Ls~N~l~----~l~~~~f~~l-~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGL-TWAS---LPTAFPVDTTELVLTGNNLT----ALPPGLLDAL-PALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCC-CTTT---SCSCCCTTCSEEECTTSCCS----SCCTTTGGGC-TTCCEEECCSSCCB
T ss_pred EEEeCCCCC-cccc---CCCCCCcCCCEEECCCCcCC----ccChhhhhhc-cccCEEEecCCCee
Confidence 566666666 3101 223344 6888888888887 443 35566 68888888888763
No 221
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.81 E-value=72 Score=33.96 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhhhhhhhhhh---hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhcc
Q psy17257 623 KDELLRNMMGLLGNVAEVKS---LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASD 683 (778)
Q Consensus 623 ~~~l~~~~lgll~niaev~~---l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~ 683 (778)
+.......+..+|++++... +++.+ ++.+..+..+|.+ +..+|.+.||..|..++..
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD--PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh
Confidence 45566778888999987532 43433 6688889999987 4688999999999999873
No 222
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.12 E-value=16 Score=34.58 Aligned_cols=133 Identities=18% Similarity=0.161 Sum_probs=82.7
Q ss_pred CChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCc
Q psy17257 608 GGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEA 687 (778)
Q Consensus 608 ~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~ 687 (778)
..++.+++.|+ ..++.+....+..||.+. .++.+..+.++|.+ +.-+|...|+..|+.+... ++
T Consensus 45 ~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~--~~ 108 (201)
T 3ltj_A 45 RAVEPLIKALK--DEDAWVRRAAADALGQIG----------DERAVEPLIKALKD--EDGWVRQSAAVALGQIGDE--RA 108 (201)
T ss_dssp GGHHHHHHHTT--CSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG--GG
T ss_pred hHHHHHHHHHc--CCCHHHHHHHHHHHHhhC----------CHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcH--HH
Confidence 45677777775 346777777777777764 24668888888987 4678999999999987442 12
Q ss_pred ccc-----ccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhh
Q psy17257 688 WTI-----RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEA 762 (778)
Q Consensus 688 w~~-----~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~ 762 (778)
... .++. ..|-.....++-++.. -....++..+|. ...|.++..|+||+..+. .
T Consensus 109 ~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~------------~ 167 (201)
T 3ltj_A 109 VEPLIKALKDED-WFVRIAAAFALGEIGD-------ERAVEPLIKALK-DEDGWVRQSAADALGEIG------------G 167 (201)
T ss_dssp HHHHHHHTTCSS-HHHHHHHHHHHHHHTC-------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC------------S
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC------------c
Confidence 111 1111 1121222223333222 134456777776 357899999999999883 2
Q ss_pred hchHHHHHHHhhccC
Q psy17257 763 EGGIELLQNLLDNEN 777 (778)
Q Consensus 763 e~g~~~l~~~~~~~~ 777 (778)
+..++.|..+.++++
T Consensus 168 ~~~~~~L~~~l~d~~ 182 (201)
T 3ltj_A 168 ERVRAAMEKLAETGT 182 (201)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhCCC
Confidence 456777777766543
No 223
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.87 E-value=1.5e+02 Score=36.61 Aligned_cols=234 Identities=11% Similarity=0.079 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHhccccccCChHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCC-
Q psy17257 384 CNEAQLLIAAKAYI-DR-PEMLQQVLNDLYHIFRYDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRP- 460 (778)
Q Consensus 384 ~~~~qil~al~~y~-~R-~~~~~~aL~~L~~l~~~~~~~~~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~- 460 (778)
....+++..+-.+. +. +..-..|...+-.+.+.-.....+..+..++.++... +..++.++..+|-.++..-...
T Consensus 44 ~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 44 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC---
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcc
Confidence 34556666666554 22 2222223333333332111112355666666665432 3357888888898888753221
Q ss_pred ---CCChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccC--cCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhH
Q psy17257 461 ---VLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQF--KIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVL 535 (778)
Q Consensus 461 ---~~~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~--~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~ 535 (778)
.+.......++..|+.++...+ +...+..++.+|+.. .....+.--...+...++..+... + +.++
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~--~------~~vR 192 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP--R------LAVR 192 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS--S------HHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC--c------HHHH
Confidence 1223357789999999997533 345666666555442 112222112355555555555321 2 6788
Q ss_pred HHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHH
Q psy17257 536 RIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLN 615 (778)
Q Consensus 536 ~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~ 615 (778)
..|+..++.++..++.+. +. .++..+++.+....+.......++. |..+-. ..|..-..+ -..-++.+++
T Consensus 193 ~~a~~al~~l~~~~~~~~---~~--~~l~~l~~~L~~~~~~~~r~~a~~~-l~~l~~---~~~~~~~~~-l~~l~~~ll~ 262 (1230)
T 1u6g_C 193 KRTIIALGHLVMSCGNIV---FV--DLIEHLLSELSKNDSMSTTRTYIQC-IAAISR---QAGHRIGEY-LEKIIPLVVK 262 (1230)
T ss_dssp HHHHHHHHHHTTTC-------CT--THHHHHHHHHHHTCSSCSCTTHHHH-HHHHHH---HSSGGGTTS-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHH---HH--HHHHHHHHHhccCCchhHHHHHHHH-HHHHHH---HhHHHHHHH-HHHHHHHHHH
Confidence 999999998887765432 21 3466666666553211111122222 222222 112100001 1234666666
Q ss_pred HHhhCCCcHHHHHHHHhhhhhhhhh
Q psy17257 616 CLQYFPEKDELLRNMMGLLGNVAEV 640 (778)
Q Consensus 616 ~l~~f~~~~~l~~~~lgll~niaev 640 (778)
.+. .+++++....+..++.++++
T Consensus 263 ~l~--d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 263 FCN--VDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHS--SCCTTTHHHHHHHHHHHHHC
T ss_pred Hhc--CCCHHHHHHHHHHHHHHHHH
Confidence 665 34566677777777777765
No 224
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=76.68 E-value=33 Score=39.28 Aligned_cols=148 Identities=10% Similarity=0.161 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChH
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGME 611 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~ 611 (778)
+.++.-|+.++..++.. +++-...+.-.|.++.+.++|+..=..+ --.+.+=|+.+++|+-...|.|=+.|.|.++++
T Consensus 180 E~iRneallLL~~Lt~~-n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~-Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~ 257 (651)
T 3grl_A 180 EVIRNDGVLLLQALTRS-NGAIQKIVAFENAFERLLDIITEEGNSD-GGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQ 257 (651)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHHTGGG-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHhccHHHHHHHHHhcCCCc-cchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHH
Confidence 66777788888877776 4443444556688999999998874321 013334577779999999999988999999999
Q ss_pred HHHHHHhhCCCcH-----HHHHHHHhhhhhhhh----------hhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHH
Q psy17257 612 LFLNCLQYFPEKD-----ELLRNMMGLLGNVAE----------VKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGV 676 (778)
Q Consensus 612 ~~~~~l~~f~~~~-----~l~~~~lgll~niae----------v~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gi 676 (778)
-+..-|+. +++. .-..|+.+.+.-|.= ...=+..+.....+..+.+++-+......|---|.-+
T Consensus 258 ~L~~LL~~-~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 258 RMKPWFEV-GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGCC-CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHhCC-CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 98877753 2111 022443333333221 1222334445556777778776643233333334444
Q ss_pred HHHHhc
Q psy17257 677 LSHIAS 682 (778)
Q Consensus 677 lahl~~ 682 (778)
+|.++.
T Consensus 337 la~~ir 342 (651)
T 3grl_A 337 VSEVIR 342 (651)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444443
No 225
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=73.37 E-value=3.5 Score=43.98 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred hcCCCccEEEecCCcccChhHHHHHhccCCCCCeEeccCccccCCcccc--hHHHhccccccEEEcCCCCCcchhhHhhc
Q psy17257 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDL--SFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273 (778)
Q Consensus 196 ~~l~~L~~L~Ls~~~l~s~~~l~~~~~~lp~L~~LdLS~~~i~~~~~~l--~~L~~l~~~L~~L~L~~~~~~~~~~~~l~ 273 (778)
..+.+|+.+.+... + ..-+ ...+..|++|+.+++..+.++ .+ .++.+| .+|+++.+... +..-....+.
T Consensus 260 ~~~~~l~~i~l~~~-i-~~i~-~~aF~~c~~L~~i~l~~~~i~----~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~ 330 (379)
T 4h09_A 260 QNCTALKTLNFYAK-V-KTVP-YLLCSGCSNLTKVVMDNSAIE----TLEPRVFMDC-VKLSSVTLPTA-LKTIQVYAFK 330 (379)
T ss_dssp TTCTTCCEEEECCC-C-SEEC-TTTTTTCTTCCEEEECCTTCC----EECTTTTTTC-TTCCEEECCTT-CCEECTTTTT
T ss_pred ceeehhcccccccc-c-eecc-ccccccccccccccccccccc----eehhhhhcCC-CCCCEEEcCcc-ccEEHHHHhh
Confidence 78899999999764 2 2111 125678999999999988776 34 246777 79999999643 3222234577
Q ss_pred CCCCccEEeccCC
Q psy17257 274 SLPLLRRLDISVS 286 (778)
Q Consensus 274 ~L~~L~~LdLS~~ 286 (778)
+|++|+.+.+..+
T Consensus 331 ~C~~L~~i~ip~~ 343 (379)
T 4h09_A 331 NCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCCCCCCTT
T ss_pred CCCCCCEEEECCc
Confidence 8999999988655
No 226
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.27 E-value=1.3e+02 Score=34.15 Aligned_cols=185 Identities=11% Similarity=0.115 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHH
Q psy17257 465 LTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNS 544 (778)
Q Consensus 465 ~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~ 544 (778)
....-+|+.+.+-+. +|| ....-....+|++-.-+.- ...+...+.+++... + +.+++-|+.-+..
T Consensus 103 e~~~l~in~l~kDL~-~~n-~~vr~lAL~~L~~i~~~~~----~~~l~~~l~~~L~~~--~------~~VRk~A~~al~~ 168 (618)
T 1w63_A 103 DVHLLMTNCIKNDLN-HST-QFVQGLALCTLGCMGSSEM----CRDLAGEVEKLLKTS--N------SYLRKKAALCAVH 168 (618)
T ss_dssp HHHHHHHHHHHHHHS-CSS-SHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHSC--C------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCC-HhHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHcCC--C------HHHHHHHHHHHHH
Confidence 334556666666663 332 2233344555555442210 122233344444321 3 6677666655554
Q ss_pred HhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhC----
Q psy17257 545 LACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYF---- 620 (778)
Q Consensus 545 l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f---- 620 (778)
+..+ +++. ++.++..+...+..+ ...+..-+..++..+....|+....|. +-++.+++.|...
T Consensus 169 l~~~-~p~~---------v~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~ 235 (618)
T 1w63_A 169 VIRK-VPEL---------MEMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSG 235 (618)
T ss_dssp HHHH-CGGG---------GGGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSC
T ss_pred HHHH-ChHH---------HHHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCC
Confidence 4433 2321 112222222222111 123445566777888888887655664 4577777777752
Q ss_pred ---------CCcHHHHHHHHhhhhhhhhhh-hhhhcccchhHHHHHHHhhcc----CCCCchhhHHHHHHHHHHh
Q psy17257 621 ---------PEKDELLRNMMGLLGNVAEVK-SLRPKLMTSKFIEVFANLVSS----KSDGIEVSYNAAGVLSHIA 681 (778)
Q Consensus 621 ---------~~~~~l~~~~lgll~niaev~-~l~~~l~~~~~i~~~~~ll~~----~~~~~evsy~a~gilahl~ 681 (778)
-.++-+|.+++.+|+.+.... ++ .+.+++.+.+++.. ...+-.|-|-|+..+.++.
T Consensus 236 ~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~ 305 (618)
T 1w63_A 236 YSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 305 (618)
T ss_dssp CCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred CCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence 136778999999999988642 12 13345566666532 1123467788887777753
No 227
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=72.37 E-value=24 Score=36.52 Aligned_cols=102 Identities=6% Similarity=0.062 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHhccCCHHHHHHhh--hhhhHHHHHHHHHHHHhhh--ccchhHHHHHHHHHhcccccHHHHHHHHhc
Q psy17257 532 NFVLRIAIYLLNSLACQVDNAHKILLG--RLGVIKKMLRLIKDRIEKQ--RCDDILEVAWSAMWNVTDETAINCARFLNN 607 (778)
Q Consensus 532 ~~~~~~av~il~~l~~~~s~~~~~~l~--~~~~~~~ll~~i~~~~~~~--~~d~~l~~~~s~lwn~tde~p~~c~~f~~~ 607 (778)
+.+...|..|+..+... +|...+.+. ...||..+..-+.+..+++ ..+...|=-++++--+...+ ..| ..
T Consensus 84 ~~~rE~aarII~ssLRN-NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~ 157 (315)
T 3qml_C 84 LTLRELSTRVITSCLRN-NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PI 157 (315)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---
T ss_pred hhHHHHHHHHHHHHHcc-CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hh
Confidence 56778999999888888 777766665 3488899888776655442 34555577788887777665 246 58
Q ss_pred CChHHHHHHHhhCCCcHHHHHHHHhhhhhhhh
Q psy17257 608 GGMELFLNCLQYFPEKDELLRNMMGLLGNVAE 639 (778)
Q Consensus 608 ~g~~~~~~~l~~f~~~~~l~~~~lgll~niae 639 (778)
.||+.+.++++.-+.++.+|+||+-++-..-.
T Consensus 158 ~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 158 YSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 89999999999755689999998888766554
No 228
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=63.16 E-value=31 Score=39.20 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHH
Q psy17257 625 ELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVE 704 (778)
Q Consensus 625 ~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~ 704 (778)
.+....+..|+++. ..+ +.+..+..+.++|.+ +.-.|...||-.+.++...+|+.+.- ..+.+.+
T Consensus 101 ~ir~~AL~~L~~i~-~~~-----~~~~l~~~l~~~L~d--~~~~VRk~A~~al~~i~~~~p~~~~~-----~~~~~~l-- 165 (591)
T 2vgl_B 101 LIRALAVRTMGCIR-VDK-----ITEYLCEPLRKCLKD--EDPYVRKTAAVCVAKLHDINAQMVED-----QGFLDSL-- 165 (591)
T ss_dssp HHHHHHHHHHHTCC-SGG-----GHHHHHHHHHHHSSC--SCHHHHHHHHHHHHHHHHSSCCCHHH-----HHHHHHH--
T ss_pred HHHHHHHHHHHcCC-hHH-----HHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHhhChhhccc-----ccHHHHH--
Confidence 34445566677775 222 334456678888887 46789999999999999877765521 2233333
Q ss_pred HhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccc
Q psy17257 705 AIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY 756 (778)
Q Consensus 705 ~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y 756 (778)
..+|. ...|+|+.=|++|+..+|..+|+.|
T Consensus 166 ---------------------~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 166 ---------------------RDLIA-DSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ---------------------HHTTS-CSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred ---------------------HHHhC-CCChhHHHHHHHHHHHHHhhCCCcc
Confidence 34443 4558999999999999999998775
No 229
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.31 E-value=2.1e+02 Score=35.20 Aligned_cols=218 Identities=11% Similarity=0.188 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCHHHHHHhhhhhhHHHHHHHHHHHHhhhc--cchhHHHH
Q psy17257 509 DRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQR--CDDILEVA 586 (778)
Q Consensus 509 ~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~~~~~~l~~~~~~~~ll~~i~~~~~~~~--~d~~l~~~ 586 (778)
..+...+++++.. .+ +.++..|+..++.++..+++. .+..++..+-..+.... .....-.+
T Consensus 47 ~~il~~Ll~~L~d--~~------~~vR~~A~~~L~~l~~~~~~~---------~~~~i~~~Ll~~l~d~~~~vR~~a~~~ 109 (1230)
T 1u6g_C 47 RKVVKMILKLLED--KN------GEVQNLAVKCLGPLVSKVKEY---------QVETIVDTLCTNMLSDKEQLRDISSIG 109 (1230)
T ss_dssp HHHHHHHHHHTTC--SS------HHHHHHHHHHHHHHHTTSCHH---------HHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CC------HHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3555566666652 24 789999999998888877652 22333333333322210 01111112
Q ss_pred HHHHHh-ccccc--HHHHHHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh--hhhhhcccchhHHHHHHHhhc
Q psy17257 587 WSAMWN-VTDET--AINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV--KSLRPKLMTSKFIEVFANLVS 661 (778)
Q Consensus 587 ~s~lwn-~tde~--p~~c~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev--~~l~~~l~~~~~i~~~~~ll~ 661 (778)
++.+-. +..+. +.....+ -..-+..+++++.. ..+.+.+...+..++.+.+. +.+.+. -++.+..+...|.
T Consensus 110 L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~ 185 (1230)
T 1u6g_C 110 LKTVIGELPPASSGSALAANV-CKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLT 185 (1230)
T ss_dssp HHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGG
T ss_pred HHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHc
Confidence 222221 22110 0000111 12235555666653 24567888888888888864 233332 2667888888887
Q ss_pred cCCCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCC-ccce----------ecccc----hhhH
Q psy17257 662 SKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDS-ERNI----------NYRSF----EPII 726 (778)
Q Consensus 662 ~~~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~-~~~v----------~yrsf----~p~~ 726 (778)
+ ++-.|.-.|+..|++++...++. ....+++.+...+..=+.+. ++.+ ....| ..++
T Consensus 186 ~--~~~~vR~~a~~al~~l~~~~~~~------~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~ 257 (1230)
T 1u6g_C 186 S--PRLAVRKRTIIALGHLVMSCGNI------VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 257 (1230)
T ss_dssp C--SSHHHHHHHHHHHHHHTTTC----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHH
T ss_pred C--CcHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7 35688999999999988743221 11223333433332211111 1110 01122 2333
Q ss_pred Hhhcc---CCCchhhHHHHHHHHHhcccCCcc
Q psy17257 727 QLLRV---YHTPECQHWSVWALANLTKVYPEK 755 (778)
Q Consensus 727 ~ll~~---~~~~~~q~wa~wa~~~~~~~~~~~ 755 (778)
+.+.. ...|++..=|++++..++...|+.
T Consensus 258 ~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 258 PLVVKFCNVDDDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence 33322 346777777888888888776654
No 230
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=53.48 E-value=1.6e+02 Score=28.37 Aligned_cols=172 Identities=12% Similarity=0.144 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchhhhhhHHhhhccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHH
Q psy17257 463 SSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLL 542 (778)
Q Consensus 463 ~~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il 542 (778)
...+|+..+..|-..++.+|. +. .-+|.+++..+...+.+-. + ..++..|...+
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~----------------~~---~~~~~~i~~~L~~~l~kd~-~------~~V~~~a~~~l 81 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPK----------------LE---NGEYGALVSALKKVITKDS-N------VVLVAMAGKCL 81 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSS----------------BC---CCCCHHHHHHHHHHHHHCS-C------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCC----------------CC---CCCHHHHHHHHHHHhccCC-C------HHHHHHHHHHH
Confidence 456777777777766655542 11 1134566666666664222 3 66777888888
Q ss_pred HHHhccCCHHHHHHhhh--hhhHHHHHHHHHHHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHHHHHHHhhC
Q psy17257 543 NSLACQVDNAHKILLGR--LGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYF 620 (778)
Q Consensus 543 ~~l~~~~s~~~~~~l~~--~~~~~~ll~~i~~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~~~~~l~~f 620 (778)
..++.. +|. ..++..++..+-.++..+. ..+-+-+-.++-++....+- ..-++.+...|+.
T Consensus 82 ~~la~~--------l~~~~~~~~~~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~- 144 (242)
T 2qk2_A 82 ALLAKG--------LAKRFSNYASACVPSLLEKFKEKK-PNVVTALREAIDAIYASTSL-------EAQQESIVESLSN- 144 (242)
T ss_dssp HHHHHH--------HGGGGHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTC-
T ss_pred HHHHHH--------HhhhHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcC-
Confidence 777743 332 1456666766666665421 12223333333333322221 1123334455542
Q ss_pred CCcHHHHHHHHhhhhhhhhhh--h--hhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q psy17257 621 PEKDELLRNMMGLLGNVAEVK--S--LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682 (778)
Q Consensus 621 ~~~~~l~~~~lgll~niaev~--~--l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~ 682 (778)
.++.++..+++.++.+++-. + ..+.+ +.++..+..+|.+ ..-+|.-.|...+..++.
T Consensus 145 -~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 145 -KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE--PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp -SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 36778899999999975442 1 11212 4678888888977 356777777777777664
No 231
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=47.58 E-value=3.8e+02 Score=32.75 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHHhcCC
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVL------SSLTKRHIITTILNGMHMHL 482 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~------~~~~~~~~i~~LL~am~~~~ 482 (778)
+..++-+++.| |..+..||.+|+.++..+|.+-..... ..+-...++..+-.+....+
T Consensus 565 ~~vl~~L~~~m--~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~ 628 (1073)
T 3gjx_A 565 KTVVNKLFEFM--HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ 628 (1073)
T ss_dssp HHHHHHHHHHT--TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC
T ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC
Confidence 44444455554 344668999999999999987654321 12234555555555555554
No 232
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=46.79 E-value=55 Score=28.54 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=39.6
Q ss_pred hHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHH
Q psy17257 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHI 680 (778)
Q Consensus 610 ~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl 680 (778)
++.+++.|+ ..++.+.......||++.. ++.+..+..+|++ +.-.|.+.|+-.|+.+
T Consensus 44 ~~~L~~~L~--d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLS--NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHh
Confidence 566667776 2467777777777777652 3457777777776 4567888888888776
No 233
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=46.20 E-value=28 Score=30.58 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHhhccCCCCchhhHHHHHHHHHHh
Q psy17257 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIA 681 (778)
Q Consensus 653 i~~~~~ll~~~~~~~evsy~a~gilahl~ 681 (778)
+..+.++|++ ++-+|.+.|+-.|+.+.
T Consensus 44 ~~~L~~~L~d--~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 44 FEPLLESLSN--EDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHhcC
Confidence 4667777776 46778888888887763
No 234
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=45.05 E-value=2.1e+02 Score=34.24 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=30.8
Q ss_pred hcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhh
Q psy17257 606 NNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV 640 (778)
Q Consensus 606 ~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev 640 (778)
...-++++.++++.|++++++.+.+++++|.++.+
T Consensus 689 ~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 689 MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 35678999999999988889999999999998876
No 235
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=35.24 E-value=2.2e+02 Score=30.19 Aligned_cols=142 Identities=17% Similarity=0.142 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHhcCChHHHHHHHhhCC---------CcHHHHHHHHhhhhhhhhhhh-hhhcccchhHHHHHHHhhccC
Q psy17257 594 TDETAINCARFLNNGGMELFLNCLQYFP---------EKDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSK 663 (778)
Q Consensus 594 tde~p~~c~~f~~~~g~~~~~~~l~~f~---------~~~~l~~~~lgll~niaev~~-l~~~l~~~~~i~~~~~ll~~~ 663 (778)
+-+...=.+.|+ .+|+..++++|.++. .+..++..+++-|+.+-.-+. +..-+-.++.|..++..|.+.
T Consensus 96 rt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~ 174 (383)
T 3eg5_B 96 TSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA 174 (383)
T ss_dssp HHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT
T ss_pred hhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC
Confidence 334444457898 889999999998652 223455444433332222221 222233577899999998874
Q ss_pred CCCchhhHHHHHHHHHHhccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHH
Q psy17257 664 SDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVW 743 (778)
Q Consensus 664 ~~~~evsy~a~gilahl~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~w 743 (778)
..-+-=-|.-+||-+..- .-.+--.+.|++.|.. +..+. +. +| |.|+...|+.....+.+.+++=
T Consensus 175 --~~~~~~~aleLL~~lc~~-----~~~~gG~~~VL~Al~~-~~~~~----e~--~R-F~~lv~~L~~~~~~e~~~~~m~ 239 (383)
T 3eg5_B 175 --VPNMMIDAAKLLSALCIL-----PQPEDMNERVLEAMTE-RAEMD----EV--ER-FQPLLDGLKSGTSIALKVGCLQ 239 (383)
T ss_dssp --SHHHHHHHHHHHHHHHTC-----CSSTTHHHHHHHHHHH-HHHHH----TS--CT-THHHHHTTSTTSCHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHhC-----cCcCCcHHHHHHHHHH-HHHhC----CC--Cc-HHHHHHHHHccCcHHHHHHHHH
Confidence 455666788888887662 2101125677777744 33322 22 55 8888888876556666666655
Q ss_pred HHHHhccc
Q psy17257 744 ALANLTKV 751 (778)
Q Consensus 744 a~~~~~~~ 751 (778)
-|-.++..
T Consensus 240 lIN~li~~ 247 (383)
T 3eg5_B 240 LINALITP 247 (383)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 55556553
No 236
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=32.31 E-value=2.5e+02 Score=27.36 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred cHHHHHHHHhcCChHHHHHHHhhCCC---------cHHHHHHHHhhhhhhhhhhh-hhhcccchhHHHHHHHhhccCCCC
Q psy17257 597 TAINCARFLNNGGMELFLNCLQYFPE---------KDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSKSDG 666 (778)
Q Consensus 597 ~p~~c~~f~~~~g~~~~~~~l~~f~~---------~~~l~~~~lgll~niaev~~-l~~~l~~~~~i~~~~~ll~~~~~~ 666 (778)
...=.+.| ..+|+..++++|.+... +...+..++.-|..+-.-+. +..-+-.++.+..+...|.+ ..
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s--~~ 109 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP--AV 109 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCT--TS
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCC--CC
Confidence 34445788 68999999999987632 33444444333333222222 21223346678888888876 35
Q ss_pred chhhHHHHHHHHHHhccCCCcccccccc-HHHHHHHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHH
Q psy17257 667 IEVSYNAAGVLSHIASDGPEAWTIRYPA-REKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWAL 745 (778)
Q Consensus 667 ~evsy~a~gilahl~~~~~~~w~~~~~~-r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~ 745 (778)
..+-=.|.-+|+-+.. |.- ..- .+.|++.|... +.+. + -+| |.|+...|+.....+.+..+.=-|
T Consensus 110 ~~~r~~~leLL~~lc~-----~~~-~~G~~~~VL~Al~~~-~~~~----e--~~R-F~~lv~~l~~~~~~e~~~~~m~lI 175 (233)
T 2f31_A 110 PNMMIDAAKLLSALCI-----LPQ-PEDMNERVLEAMTER-AEMD----E--VER-FQPLLDGLKSGTSIALKVGCLQLI 175 (233)
T ss_dssp HHHHHHHHHHHHHHHT-----CSS-SSCHHHHHHHHHHHH-HHHH----T--SCT-THHHHHTTSTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh-----CCC-CCChHHHHHHHHHHH-HHhC----C--cch-HHHHHHHHhcCChHHHHHHHHHHH
Confidence 6666677778887655 221 112 56677766532 2221 1 123 777777777655556666655555
Q ss_pred HHhccc
Q psy17257 746 ANLTKV 751 (778)
Q Consensus 746 ~~~~~~ 751 (778)
-.+...
T Consensus 176 N~li~~ 181 (233)
T 2f31_A 176 NALITP 181 (233)
T ss_dssp HHHHTT
T ss_pred HHHHCC
Confidence 555554
No 237
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=28.11 E-value=3.9e+02 Score=31.79 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhcCCCchhhhhh
Q psy17257 423 EHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRN 490 (778)
Q Consensus 423 ~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~~~~~~~~i~~LL~am~~~~~~~~l~~n 490 (778)
+++.......+.. ..+..++..|.-.|.+..+... ..++..++..+-+.++..+..+.......||
T Consensus 38 p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w-~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~ 103 (971)
T 2x1g_F 38 PQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHW-HEVPPENREELKQKILESIVRFAGGPKIVLN 103 (971)
T ss_dssp THHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCG-GGCCGGGHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccH-hhCCHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444444444433 2456788888888888888754 3578888888888888888766432334444
No 238
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=27.83 E-value=8.6e+02 Score=29.16 Aligned_cols=59 Identities=5% Similarity=0.086 Sum_probs=38.0
Q ss_pred CcHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHHHHhhccCCCCchhhHHHHHHHHHHhccCC
Q psy17257 622 EKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGP 685 (778)
Q Consensus 622 ~~~~l~~~~lgll~niaev~~l~~~l~~~~~i~~~~~ll~~~~~~~evsy~a~gilahl~~~~~ 685 (778)
..+++..++|..++.-...-.+ ..+++++++..+.++|.+ -++.--|+-.|.-+++.+.
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCC
Confidence 3556667777766665543222 234557788888888765 3667777777887777653
No 239
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=21.78 E-value=8.5e+02 Score=29.36 Aligned_cols=300 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHHhcCCCchhhhhhHHhhh
Q psy17257 422 IEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLS------SLTKRHIITTILNGMHMHLEDDTMMRNGCLTL 495 (778)
Q Consensus 422 ~~e~l~lV~~am~~h~~~~~vq~~gsacL~~L~~~~~~~~~~------~~~~~~~i~~LL~am~~~~~~~~l~~n~~l~l 495 (778)
++..+..+.++| +.....||.+|+.++.+||.+-+..... .+-...++..+..+.+..+
T Consensus 538 L~~vl~~L~~~l--~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~------------- 602 (1023)
T 4hat_C 538 LRTVILKLFEFM--HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ------------- 602 (1023)
T ss_dssp HHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC-------------
T ss_pred HHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC-------------
Q ss_pred ccCcCCccccccHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHhccCCH------HHHHHhhhhhhHHHHHHH
Q psy17257 496 CQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDN------AHKILLGRLGVIKKMLRL 569 (778)
Q Consensus 496 ~~~~il~~~~f~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~av~il~~l~~~~s~------~~~~~l~~~~~~~~ll~~ 569 (778)
+-+..++.+-+...+.....+ ....+..-.++.-+..+... ..-..+++...++.+..+
T Consensus 603 ---------~~~~~~lyeai~~vi~~~~~~------~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~i 667 (1023)
T 4hat_C 603 ---------PQQVHTFYKACGIIISEERSV------AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1023)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCCSH------HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhCCCH------hhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHH
Q ss_pred HH-----HHHhhhccchhHHHHHHHHHhcccccHHHHHHHHhcCChHH----HHHHHhhCCCcHHHHHHHHhhhhhhhhh
Q psy17257 570 IK-----DRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMEL----FLNCLQYFPEKDELLRNMMGLLGNVAEV 640 (778)
Q Consensus 570 i~-----~~~~~~~~d~~l~~~~s~lwn~tde~p~~c~~f~~~~g~~~----~~~~l~~f~~~~~l~~~~lgll~niaev 640 (778)
++ .+.-...+-..++-+|..+-++=.-....=...+..+|... .+++++.. +.++.+-+=..+++-...
T Consensus 668 l~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~i--k~~il~l~~~~i~~~~~~ 745 (1023)
T 4hat_C 668 IKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTI--KKEILKLVETYISKARNL 745 (1023)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHH--HHHHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHH--HHHHHHHHHHHHhcCCCH
Q ss_pred hhhhhcccchhHHHHHHHhhccCC--CCchhhHHHHHHHHHHhccCC-------------------CccccccccHHHHH
Q psy17257 641 KSLRPKLMTSKFIEVFANLVSSKS--DGIEVSYNAAGVLSHIASDGP-------------------EAWTIRYPAREKVL 699 (778)
Q Consensus 641 ~~l~~~l~~~~~i~~~~~ll~~~~--~~~evsy~a~gilahl~~~~~-------------------~~w~~~~~~r~~~~ 699 (778)
++.-..++.+=+-.+...+-++.- .+-||=|..+.|+--+...-. +.-.-....|..+.
T Consensus 746 ~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff 825 (1023)
T 4hat_C 746 DDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFY 825 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHH
Q ss_pred HHHHHHhccCCCCCccceecccchhhHHhhccCCCchhhHHHHHHHHHhcccCCccccchhhhhchHHHHHHHhhc
Q psy17257 700 AKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775 (778)
Q Consensus 700 ~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~~~~~~~~q~wa~wa~~~~~~~~~~~y~~~~~~e~g~~~l~~~~~~ 775 (778)
+.+...+++ +|..|+. ++......+--.++||+.|--.. +.+-|+..+.++.++
T Consensus 826 ~ll~~~~~~------------~f~~~~~-~~~~~~~~~~~~~~~a~~h~~r~---------~~~~~l~~~~~ll~~ 879 (1023)
T 4hat_C 826 KLLKVINEK------------SFAAFLE-LPPAAFKLFVDAICWAFKHNNRD---------VEVNGLQIALDLVKN 879 (1023)
T ss_dssp HHHHHHHHH------------CTHHHHT-SCHHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------ChHHHHc-CCHHHHHHHHHHHHHHcCCCchH---------HHHHHHHHHHHHHHH
No 240
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=21.75 E-value=3.1e+02 Score=28.60 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=86.7
Q ss_pred HHHHhcCChHHHHHHHhhCCCcHHHHHHHHhhhhhhhhhhhhhhccc-chhHHHHHHHhhccCCCCchhhHHHHHHHHHH
Q psy17257 602 ARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLM-TSKFIEVFANLVSSKSDGIEVSYNAAGVLSHI 680 (778)
Q Consensus 602 ~~f~~~~g~~~~~~~l~~f~~~~~l~~~~lgll~niaev~~l~~~l~-~~~~i~~~~~ll~~~~~~~evsy~a~gilahl 680 (778)
..||+.+|+..++++.+.- +.+.|.-+|..++++-+-..=..-++ .++||+-+.+++.+ ....|.=-|-+||--+
T Consensus 154 ~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s--~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 154 PEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS--LSRLVVKTALKLLLVF 229 (339)
T ss_dssp HHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC--ccHHHHHHHHHHHHHH
Confidence 4789999999999999874 88889889999998876522111122 68999999999996 4678888888888888
Q ss_pred hccCCCccccccccHHHHHHHHHHHhccCCCCCccceecccchhhHHhhc--cCCCchhhHHHHHHHHHhcccCC
Q psy17257 681 ASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLR--VYHTPECQHWSVWALANLTKVYP 753 (778)
Q Consensus 681 ~~~~~~~w~~~~~~r~~~~~~~~~~i~~w~~~~~~~v~yrsf~p~~~ll~--~~~~~~~q~wa~wa~~~~~~~~~ 753 (778)
+.-.+.-+. + ++.||..-. ..+- =+=|..+..+|+ .....+.|.-|.=-|.-+..+=|
T Consensus 230 V~~se~~~~--------l---v~~av~~v~--~~~~--~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 230 VEYSENNAP--------L---FIRAVNSVA--STTG--APPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHCGGGHH--------H---HHHHHHHHH--HHHC--CCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HccCcccch--------H---HHHHHHHhh--hccC--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 764322221 2 233333210 0000 011667777886 34577888877655555555444
Done!