RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17257
(778 letters)
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 85.4 bits (211), Expect = 2e-17
Identities = 38/269 (14%), Positives = 92/269 (34%), Gaps = 28/269 (10%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ + VL AI L++L + K+ + G ++KM+ L+ L +
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKT-----NVKFLAITT 161
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKL 647
+ + + L +GG + +N ++ ++LL +L ++ S +P +
Sbjct: 162 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAI 220
Query: 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPA-----------RE 696
+ + ++ ++ S + N L ++ SD
Sbjct: 221 VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNL-SDAATKQEGMEGLLGTLVQLLGSDDI 277
Query: 697 KVLAKMVEAIERWPIDSERN----INYRSFEPIIQLLRVYHT-PECQHWSVWALANLTKV 751
V+ + ++ +N E +++ + + ++ AL +LT
Sbjct: 278 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337
Query: 752 YP--EKYCQVVEAEGGIELLQNLLDNENK 778
+ E V G+ ++ LL +
Sbjct: 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366
Score = 80.4 bits (198), Expect = 9e-16
Identities = 55/303 (18%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 479 HMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIA 538
H+ +++N TL Q + L+ L+ ++ + V+ A
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL--------GSDDINVVTCA 283
Query: 539 IYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT---D 595
+L++L C + +K+++ ++G I+ ++R + +++ DI E A A+ ++T
Sbjct: 284 AGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDRE---DITEPAICALRHLTSRHQ 339
Query: 596 ETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEV 655
E + + G+ + + L P L++ +GL+ N+A + L I
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 398
Query: 656 FANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE-RWPIDSE 714
L+ + G +G I L + + R I
Sbjct: 399 LVQLLVRAHQDT-QRRTSMGGTQQQFVEGVRMEEIVEGC-TGALHILARDVHNRIVIRGL 456
Query: 715 RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774
I +QLL Q + L L + ++ + +EAEG L LL
Sbjct: 457 NTI-----PLFVQLLYS-PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 508
Query: 775 NEN 777
+ N
Sbjct: 509 SRN 511
Score = 68.0 bits (166), Expect = 7e-12
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 35/219 (15%)
Query: 560 LGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY 619
I ++ +L+ D + + A + ++ + A A + + + +Q
Sbjct: 13 TRAIPELTKLLNDEDQVVVN----KAAV-MVHQLSKKEASRHAIMRSPQMVSAIVRTMQ- 66
Query: 620 FPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSH 679
E R G L N++ + + S I ++ S D V + A L +
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHN 124
Query: 680 IASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739
+ A + A + ++ LL +
Sbjct: 125 LLLHQEGAK-----------MAVRLA--------------GGLQKMVALLN-KTNVKFLA 158
Query: 740 WSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+ L L E ++ A GG + L N++
Sbjct: 159 ITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTY 196
Score = 59.9 bits (145), Expect = 2e-09
Identities = 44/291 (15%), Positives = 84/291 (28%), Gaps = 70/291 (24%)
Query: 509 DRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKI--LLGRLGVIKKM 566
+ LVR +L + + AI L L + A + + +
Sbjct: 308 EALVRTVL----------RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357
Query: 567 LRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY------- 619
++L+ ++ + N+ A N A G + + L
Sbjct: 358 VKLLHPPSHWPL----IKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQR 412
Query: 620 -------------FPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDG 666
+E++ G L +A R + I +F L+ S +
Sbjct: 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE- 471
Query: 667 IEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPII 726
+ AAGVL +A D A I + P+
Sbjct: 472 -NIQRVAAGVLCELAQDKEAAEAI--------------------------EAEGATAPLT 504
Query: 727 QLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
+LL ++ L +++ P+ Y + + +EL +L E
Sbjct: 505 ELLHS-RNEGVATYAAAVLFRMSEDKPQDYKKRL----SVELTSSLFRTEP 550
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 79.8 bits (197), Expect = 1e-15
Identities = 38/251 (15%), Positives = 87/251 (34%), Gaps = 39/251 (15%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ + VL AI L++L + K+ + G ++KM+ L+ L +
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKT-----NVKFLAITT 164
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKL 647
+ + + L +GG + +N ++ ++LL +L ++ S +P +
Sbjct: 165 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAI 223
Query: 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE 707
+ + ++ ++ S + N L +++ +++ + ++
Sbjct: 224 VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLSDA---------ATKQEGMEGLLG--- 269
Query: 708 RWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIE 767
++QLL + L+NLT K +V GGIE
Sbjct: 270 ----------------TLVQLLGS-DDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIE 311
Query: 768 LLQNLLDNENK 778
L +
Sbjct: 312 ALVRTVLRAGD 322
Score = 76.7 bits (189), Expect = 9e-15
Identities = 55/303 (18%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 479 HMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIA 538
H+ +++N TL Q + L+ L+ ++ + V+ A
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL--------GSDDINVVTCA 286
Query: 539 IYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT---D 595
+L++L C + +K+++ ++G I+ ++R + +++ DI E A A+ ++T
Sbjct: 287 AGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDRE---DITEPAICALRHLTSRHQ 342
Query: 596 ETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEV 655
E + + G+ + + L P L++ +GL+ N+A + L I
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401
Query: 656 FANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE-RWPIDSE 714
L+ + G +G I L + + R I
Sbjct: 402 LVQLLVRAHQDT-QRRTSMGGTQQQFVEGVRMEEIVEGC-TGALHILARDVHNRIVIRGL 459
Query: 715 RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774
I +QLL Q + L L + ++ + +EAEG L LL
Sbjct: 460 NTI-----PLFVQLLYS-PIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 511
Query: 775 NEN 777
+ N
Sbjct: 512 SRN 514
Score = 69.0 bits (169), Expect = 2e-12
Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 35/219 (15%)
Query: 560 LGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY 619
I ++ +L+ D + + A + ++ + A A + + + +Q
Sbjct: 16 TRAIPELTKLLNDEDQVVVN----KAAV-MVHQLSKKEASRHAIMRSPQMVSAIVRTMQ- 69
Query: 620 FPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSH 679
E R G L N++ + + S I ++ S D V + A L +
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHN 127
Query: 680 IASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQH 739
+ A + A + ++ LL +
Sbjct: 128 LLLHQEGAK-----------MAVRLA--------------GGLQKMVALLN-KTNVKFLA 161
Query: 740 WSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+ L L E ++ A GG + L N++
Sbjct: 162 ITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTY 199
Score = 65.6 bits (160), Expect = 3e-11
Identities = 38/268 (14%), Positives = 81/268 (30%), Gaps = 44/268 (16%)
Query: 512 VRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIK 571
+ L++I+ +E +L +L L+ N I+ G ++ + +
Sbjct: 187 PQALVNIMRTYTYEK-------LLWTTSRVLKVLSVCSSNKPAIV--EAGGMQALGLHLT 237
Query: 572 DRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMM 631
D +++ + N++D + G + + L + ++
Sbjct: 238 DP-----SQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGS--DDINVVTCAA 287
Query: 632 GLLGN-VAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTI 690
G+L N + + IE V D +++ A L H+ S EA
Sbjct: 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--- 344
Query: 691 RYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK 750
E + +++LL + + L
Sbjct: 345 -----EMAQNAVRLH--------------YGLPVVVKLLHP-PSHWPLIKATVGLIRNLA 384
Query: 751 VYPEKYCQVVEAEGGIELLQNLLDNENK 778
+ P + + E G I L LL ++
Sbjct: 385 LCPANHAPLREQ-GAIPRLVQLLVRAHQ 411
Score = 49.4 bits (118), Expect = 3e-06
Identities = 40/263 (15%), Positives = 75/263 (28%), Gaps = 66/263 (25%)
Query: 509 DRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKI--LLGRLGVIKKM 566
+ LVR +L + + AI L L + A + + +
Sbjct: 311 EALVRTVL----------RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360
Query: 567 LRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQ-------- 618
++L+ ++ + N+ A N A G + + L
Sbjct: 361 VKLLHPPSHWPL----IKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQR 415
Query: 619 ------------YFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDG 666
+E++ G L +A R + I +F L+ S +
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE- 474
Query: 667 IEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPII 726
+ AAGVL +A D + EAIE + P+
Sbjct: 475 -NIQRVAAGVLCELAQD----------------KEAAEAIEA----------EGATAPLT 507
Query: 727 QLLRVYHTPECQHWSVWALANLT 749
+LL ++ L ++
Sbjct: 508 ELLHS-RNEGVATYAAAVLFRMS 529
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 80.1 bits (197), Expect = 1e-15
Identities = 53/304 (17%), Positives = 110/304 (36%), Gaps = 27/304 (8%)
Query: 478 MHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRI 537
+H+ +++N TL Q + L+ L+ ++ + V+
Sbjct: 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL--------GSDDINVVTC 418
Query: 538 AIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT--- 594
A +L++L C + +K+++ ++G I+ ++R + ++ +DI E A A+ ++T
Sbjct: 419 AAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDR---EDITEPAICALRHLTSRH 474
Query: 595 DETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIE 654
+ + + G+ + + L P L++ +GL+ N+A + L I
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533
Query: 655 VFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE-RWPIDS 713
L+ + + + A L + I R I
Sbjct: 534 RLVQLLVRAHQ--DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRG 591
Query: 714 ERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLL 773
I +QLL Q + L L + ++ + +EAEG L LL
Sbjct: 592 LNTI-----PLFVQLLYS-PIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELL 643
Query: 774 DNEN 777
+ N
Sbjct: 644 HSRN 647
Score = 78.2 bits (192), Expect = 5e-15
Identities = 38/251 (15%), Positives = 83/251 (33%), Gaps = 39/251 (15%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ + VL AI L++L K+ + G ++KM+ L+ L +
Sbjct: 244 GSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITT 297
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKL 647
+ + + L +GG + +N ++ ++LL +L ++ S +P +
Sbjct: 298 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAI 356
Query: 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE 707
+ + ++ ++ S + N L +++ + M +
Sbjct: 357 VEAGGMQALGLHLTDPSQ--RLVQNCLWTLRNLSDAATKQ------------EGMEGLLG 402
Query: 708 RWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIE 767
++QLL + L+NLT + +V GGIE
Sbjct: 403 ----------------TLVQLLGS-DDINVVTCAAGILSNLTCNNYKN-KMMVCQVGGIE 444
Query: 768 LLQNLLDNENK 778
L +
Sbjct: 445 ALVRTVLRAGD 455
Score = 71.6 bits (175), Expect = 6e-13
Identities = 35/243 (14%), Positives = 72/243 (29%), Gaps = 35/243 (14%)
Query: 535 LRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT 594
L +L + N I ++ +L+ D + + A + ++
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVN----KAAV-MVHQLS 178
Query: 595 DETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIE 654
+ A A + + + +Q E R G L N++ + + S I
Sbjct: 179 KKEASRHAIMRSPQMVSAIVRTMQ-NTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIP 237
Query: 655 VFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE 714
N++ S D V ++A L ++ A + A
Sbjct: 238 ALVNMLGSPVD--SVLFHAITTLHNLLLHQEGAK-----------MAVRLA--------- 275
Query: 715 RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774
+ ++ LL + + L L E ++ A GG + L N++
Sbjct: 276 -----GGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQE-SKLIILASGGPQALVNIMR 328
Query: 775 NEN 777
Sbjct: 329 TYT 331
Score = 52.3 bits (125), Expect = 5e-07
Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 31/237 (13%)
Query: 470 IITTILNGMHMHLEDDTMMRNGCLTL---CQFKIPQDVQFDYDRLVRILLHIITEMEHES 526
I ++ + + + + L ++ + RL L ++ + S
Sbjct: 442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501
Query: 527 NSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKD-------------- 572
+ +++ + L+ +LA N L G I ++++L+
Sbjct: 502 HWP----LIKATVGLIRNLALCPAN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555
Query: 573 ---RIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRN 629
+E R ++I+E A+ N + LF+ L + + R
Sbjct: 556 QQQFVEGVRMEEIVEACTGALHI-LARDIHNRIVIRGLNTIPLFVQLLY--SPIENIQRV 612
Query: 630 MMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE 686
G+L +A+ K + L+ S+++ V+ AA VL ++ D P+
Sbjct: 613 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE--GVATYAAAVLFRMSEDKPQ 667
Score = 40.8 bits (95), Expect = 0.002
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 29/126 (23%)
Query: 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPID 712
I L++ + V AA ++ ++ + + + +
Sbjct: 152 IPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEAS---------RHAIMRSPQMVS----- 195
Query: 713 SERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNL 772
I++ ++ + E + L NL+ + E + ++ GGI L N+
Sbjct: 196 -----------AIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKS-GGIPALVNM 242
Query: 773 LDNENK 778
L +
Sbjct: 243 LGSPVD 248
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 77.4 bits (190), Expect = 6e-15
Identities = 47/288 (16%), Positives = 104/288 (36%), Gaps = 35/288 (12%)
Query: 514 ILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDR 573
+ ++ + S + LR + L++L C+ N L ++ ++RL+
Sbjct: 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 574 IEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGL 633
+ D W A+ +TD + G + + L + ++ +
Sbjct: 245 DPEVLAD----SCW-AISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRA 297
Query: 634 LGN-VAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG-------- 684
+GN V K++ + + VF +L+++ I+ A +S+I +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK--EATWTMSNITAGRQDQIQQVV 355
Query: 685 -----PEAWTIRYPAREKVLAKMVEAIERWPIDSERN-----INYRSFEPIIQLLRVYHT 734
P + A K + AI + ++ EP++ LL
Sbjct: 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKD 414
Query: 735 PECQHWSVWALANLTKVYP-----EKYCQVVEAEGGIELLQNLLDNEN 777
+ + A++N+ + EK ++E GG++ ++ L +EN
Sbjct: 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462
Score = 62.3 bits (151), Expect = 3e-10
Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 40/298 (13%)
Query: 483 EDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLL 542
E M T K D+ + + + I+ + + A
Sbjct: 27 ERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLE-----SQLQATQAA 81
Query: 543 NSLACQVDNAHKILLGRLGVIKKMLRLIK--DRIEKQRCDDILEVAWSAMWNVTDETAIN 600
L + + R G+I K + + D Q E AW A+ N+ T+
Sbjct: 82 RKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQF-----ESAW-ALTNIASGTSEQ 135
Query: 601 CARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA-EVKSLRPKLMTSKFIEVFANL 659
++ G + F++ L + + LGN+A + + R ++ I+ L
Sbjct: 136 TKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193
Query: 660 VSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINY 719
++ ++S A G L ++ WT+ R K A ++A+E+
Sbjct: 194 LAVP----DLSTLACGYLRNLT------WTLSNLCRNKNPAPPLDAVEQ----------- 232
Query: 720 RSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
+++LL ++ PE S WA++ LT E+ VV+ G + L LL
Sbjct: 233 -ILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKK-GVVPQLVKLLGATE 287
Score = 57.7 bits (139), Expect = 8e-09
Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 50/273 (18%)
Query: 510 RLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRL 569
+ V L + + + + L ++A + + G I + L
Sbjct: 104 KFVSFL-----------GKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISL 151
Query: 570 IKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE---KDEL 626
+ I E A A+ N+ + + + +G ++ L L
Sbjct: 152 LASP-----HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 206
Query: 627 LRNMMGLLGNVAEVKSLRPKLMT-SKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGP 685
LRN+ L N+ K+ P L + + L+ EV ++ +S++
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--EVLADSCWAISYLTDGPN 264
Query: 686 EAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWAL 745
E +E + + +++LL ++ A+
Sbjct: 265 E---------------RIEMV----------VKKGVVPQLVKLLG-ATELPIVTPALRAI 298
Query: 746 ANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
N+ E Q V G + + +LL N
Sbjct: 299 GNIVTGTDE-QTQKVIDAGALAVFPSLLTNPKT 330
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 70.8 bits (173), Expect = 7e-13
Identities = 42/273 (15%), Positives = 104/273 (38%), Gaps = 36/273 (13%)
Query: 511 LVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLI 570
+ LL + EM +N + S + R A L +L L G ++ ++ +
Sbjct: 194 IAE-LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252
Query: 571 KDRIEKQRCDDILEVAWSAMWNVT-DETAINCARFLNNGGMELFLNCLQYFPEKDELLRN 629
K +D+ +V S + N++ + G ++ + C +K+ L++
Sbjct: 253 KSE-----SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKS 306
Query: 630 MMGLLGN-VAEVKSLRPKLMTSK-FIEVFANLVSSKSDG--IEVSYNAAGVLSHIASDGP 685
++ L N A + + + ++ +S + + + G+L +++S
Sbjct: 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS--- 363
Query: 686 EAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWAL 745
++A + R + + + ++Q L+ H+ + L
Sbjct: 364 ------------LIATNEDH--RQILRENNCL-----QTLLQHLKS-HSLTIVSNACGTL 403
Query: 746 ANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
NL+ P+ + + G + +L+NL+ +++K
Sbjct: 404 WNLSARNPK-DQEALWDMGAVSMLKNLIHSKHK 435
Score = 54.2 bits (130), Expect = 9e-08
Identities = 47/347 (13%), Positives = 101/347 (29%), Gaps = 71/347 (20%)
Query: 461 VLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIIT 520
+L + K + T+L +M ++GCL L L+++L
Sbjct: 40 MLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPL---------------LIQLLHGNDK 84
Query: 521 EMEHESNSNGSNFVLRIAI-YLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRC 579
+ NS GS A L N + Q D+ R+ + + +R + + +
Sbjct: 85 DSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQE 144
Query: 580 -----------------DDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYF-- 620
+ + A + ++ + + GG++ LQ
Sbjct: 145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCE 203
Query: 621 -------PEKDELLRNMMGLLGNVAEVKSLRPKLMTSK--FIEVFANLVSSKSDGIEVSY 671
L R L N+ + S + + S+S+ ++
Sbjct: 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQ 261
Query: 672 NAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRV 731
A VL +++ K + V +++ +++
Sbjct: 262 VIASVLRNLSWRADV--------NSKKTLREVGSVK----------------ALMECALE 297
Query: 732 YHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+ AL NL+ E + +G + L L ++
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ 344
Score = 54.2 bits (130), Expect = 9e-08
Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 39/236 (16%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ S + ++ +L +L+ + D K L +G +K ++ + + + L+
Sbjct: 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE----VKKESTLKSVL 308
Query: 588 SAMWNVTDETAINCARFLN-NGGMELFLNCLQYFPE--KDELLRNMMGLLGNV----AEV 640
SA+WN++ N A +G + + L Y + ++ + G+L NV A
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 641 KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLA 700
+ R L + ++ + S S I NA G L ++++ P+
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVS--NACGTLWNLSARNPK-------------- 412
Query: 701 KMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY 756
EA+ + + + L+ S AL NL P KY
Sbjct: 413 -DQEAL----------WDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRPAKY 456
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 69.9 bits (171), Expect = 7e-13
Identities = 42/304 (13%), Positives = 103/304 (33%), Gaps = 53/304 (17%)
Query: 509 DRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLR 568
D+ + + + A+ +L L+ D H+ + LG ++ +
Sbjct: 35 DQDKNPMPAPVEH------------QICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAE 80
Query: 569 LIKDRIE------KQRCDDILEVAWSAMWNVTDETAINCARFLNN-GGMELFLNCLQYFP 621
L++ E + A A+ N+T N A + G M + L+
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK--S 138
Query: 622 EKDELLRNMMGLLGNVAEVKSL--RPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSH 679
E ++L + + +L N++ + + L ++ + L +
Sbjct: 139 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWN 197
Query: 680 IASDGPE---------------AWTIRYPAR---EKVLAKMVEAIERWPIDSERNINYRS 721
+++ E T+ Y ++ ++ + N ++R
Sbjct: 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257
Query: 722 -------FEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774
+ ++Q L+ H+ + L NL+ P+ + + G + +L+NL+
Sbjct: 258 ILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIH 315
Query: 775 NENK 778
+++K
Sbjct: 316 SKHK 319
Score = 59.1 bits (143), Expect = 2e-09
Identities = 43/242 (17%), Positives = 88/242 (36%), Gaps = 41/242 (16%)
Query: 534 VLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNV 593
+ ++ +L +L+ + D K L +G +K ++ + + + L+ SA+WN+
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE----VKKESTLKSVLSALWNL 198
Query: 594 TDETAINCARFLN-NGGMELFLNCLQYFPE--KDELLRNMMGLLGNV----AEVKSLRPK 646
+ N A +G + + L Y + ++ + G+L NV A + R
Sbjct: 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258
Query: 647 LMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAI 706
L + ++ + S S I NA G L ++++ P+ ++ + A+
Sbjct: 259 LRENNCLQTLLQHLKSHSLTIVS--NACGTLWNLSARNPK---------DQEALWDMGAV 307
Query: 707 ERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKY--CQVVEAEG 764
+ L+ H S AL NL P KY ++
Sbjct: 308 S----------------MLKNLIHSKH-KMIAMGSAAALRNLMANRPAKYKDANIMSPGS 350
Query: 765 GI 766
+
Sbjct: 351 SL 352
Score = 58.7 bits (142), Expect = 3e-09
Identities = 30/256 (11%), Positives = 75/256 (29%), Gaps = 47/256 (18%)
Query: 534 VLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNV 593
+L LL + + + + + + +E Q C + +
Sbjct: 9 MLH----LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC----PAVC-VLMKL 59
Query: 594 TDETAINCARFLNNGGMELFLNCLQY---------FPEKDELLRNMMGLLGNVA-EVKSL 643
+ + + GG++ LQ L R L N+ +
Sbjct: 60 SFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN 118
Query: 644 RPKLMTSK-FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKM 702
+ L + K + + S+S+ ++ A VL +++ +++ +
Sbjct: 119 KATLCSMKGCMRALVAQLKSESE--DLQQVIASVLRNLSWRADVN------SKKTLRE-- 168
Query: 703 VEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEA 762
V +++ +++ + AL NL+ E +
Sbjct: 169 VGSVK----------------ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 763 EGGIELLQNLLDNENK 778
+G + L L ++
Sbjct: 213 DGALAFLVGTLTYRSQ 228
Score = 43.3 bits (102), Expect = 2e-04
Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 16/184 (8%)
Query: 512 VRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIK 571
V+ L+ E++ ES L+ + L +L+ + G + ++ +
Sbjct: 172 VKALMECALEVKKES-------TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 224
Query: 572 DRIEKQRCDDILEVAWSAMWNVTDETAI---NCARFLNNGGMELFLNCLQYFPEKDELLR 628
R + I+E + NV+ A + N ++ L L+ ++
Sbjct: 225 YRSQTNT-LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVS 281
Query: 629 NMMGLLGN-VAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEA 687
N G L N A + L + + NL+ SK ++ +A L ++ ++ P
Sbjct: 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK--MIAMGSAAALRNLMANRPAK 339
Query: 688 WTIR 691
+
Sbjct: 340 YKDA 343
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 67.3 bits (165), Expect = 2e-12
Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 39/219 (17%)
Query: 561 GVIKKMLRLIK-DRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY 619
+ +M + + D +++Q A + + ++ G + + L
Sbjct: 12 SELPQMTQQLNSDDMQEQLS------ATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS 65
Query: 620 FPEKDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLS 678
+++L+ + L N+A + ++ + + L+SS ++ ++ A LS
Sbjct: 66 --PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALS 121
Query: 679 HIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQ 738
+IAS G E + V+ A+ ++QLL +
Sbjct: 122 NIASGGNEQ-------IQAVID--AGALP----------------ALVQLLSSP-NEQIL 155
Query: 739 HWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
++WAL+N+ E+ V++A G + L LL + N
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPN 193
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 32/179 (17%)
Query: 600 NCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFAN 658
+ + + L + + + + + ++ + +
Sbjct: 4 SHHHHHHGSELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61
Query: 659 LVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNIN 718
L+SS ++ ++ A LS+IAS G E ++A+ I+
Sbjct: 62 LLSSPNE--QILQEALWALSNIASGGNE---------------QIQAV----------ID 94
Query: 719 YRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
+ ++QLL + ++WAL+N+ E+ V++A G + L LL + N
Sbjct: 95 AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPN 151
Score = 42.3 bits (100), Expect = 3e-04
Identities = 25/157 (15%), Positives = 64/157 (40%), Gaps = 13/157 (8%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKI-LLGRLGVIKKMLRLIKDRIEKQRCDDILEVA 586
S+ + +L+ A++ L+++A +I + G + +++L+ E+ E
Sbjct: 106 SSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQIL----QEAL 159
Query: 587 WSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRP 645
W A+ N+ ++ G + + L +++L+ + L N+A +
Sbjct: 160 W-ALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQ 216
Query: 646 KLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682
+ + +E L S +++ ++ A L + S
Sbjct: 217 AVKEAGALEKLEQLQSHENE--KIQKEAQEALEKLQS 251
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 29/126 (23%)
Query: 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPID 712
+ ++S + +A S I SDG E ++A+
Sbjct: 14 LPQMTQQLNSDDM--QEQLSATRKFSQILSDGNE---------------QIQAV------ 50
Query: 713 SERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNL 772
I+ + ++QLL + ++WAL+N+ + Q V G + L L
Sbjct: 51 ----IDAGALPALVQLLS-SPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQL 104
Query: 773 LDNENK 778
L + N+
Sbjct: 105 LSSPNE 110
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 65.3 bits (160), Expect = 3e-12
Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 39/228 (17%)
Query: 551 NAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGM 610
+ H G + +M++ + L+ A + + ++ G +
Sbjct: 4 SHHHHHHG--SELPQMVQQLNSP-----DQQELQSALRKLSQIASGGNEQIQAVIDAGAL 56
Query: 611 ELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSKSDGIEV 669
+ L +++L+ + L N+A + ++ + + L+SS ++ I
Sbjct: 57 PALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 670 SYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLL 729
A LS+IAS G E ++A+ I+ + ++QLL
Sbjct: 115 --EALWALSNIASGGNE---------------QIQAV----------IDAGALPALVQLL 147
Query: 730 RVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
+ ++WAL+N+ E+ V EA G +E L+ L +EN
Sbjct: 148 SSP-NEQILQEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQSHEN 193
Score = 55.3 bits (134), Expect = 1e-08
Identities = 38/224 (16%), Positives = 77/224 (34%), Gaps = 37/224 (16%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
++ L+ A+ L+ +A N + G + +++L+ E+ E W
Sbjct: 22 NSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQ----EALW 76
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEV-KSLRPK 646
A+ N+ ++ G + + L +++L+ + L N+A
Sbjct: 77 -ALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQA 133
Query: 647 LMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAI 706
++ + + L+SS + ++ A LS+IAS G E + V+
Sbjct: 134 VIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGNE------------QKQAVK-- 177
Query: 707 ERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTK 750
E E + QL + Q + AL L
Sbjct: 178 -------EAGA----LEKLEQLQSH-ENEKIQKEAQEALEKLQS 209
Score = 39.2 bits (92), Expect = 0.003
Identities = 26/174 (14%), Positives = 67/174 (38%), Gaps = 23/174 (13%)
Query: 510 RLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRL 569
LV++L + +L+ A++ L+++A + + G + +++L
Sbjct: 58 ALVQLLSS------------PNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQL 104
Query: 570 IKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRN 629
+ + IL+ A A+ N+ ++ G + + L +++L+
Sbjct: 105 LSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQE 157
Query: 630 MMGLLGNVAEV-KSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682
+ L N+A + + + +E L S +++ ++ A L + S
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE--KIQKEAQEALEKLQS 209
Score = 36.5 bits (85), Expect = 0.020
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 723 EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
++Q L + ++ L+ + E+ V++A G + L LL + N+
Sbjct: 15 PQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPNE 68
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 66.8 bits (163), Expect = 9e-12
Identities = 42/248 (16%), Positives = 86/248 (34%), Gaps = 40/248 (16%)
Query: 534 VLRIAIYLLNSLACQVDNA-HKILLGRLGVIKKMLRLIK--DRIEKQRCDDILEVAWSAM 590
A L + N ++ GV+ + + +K + Q E AW +
Sbjct: 36 QQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF-----ESAW-VL 89
Query: 591 WNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA-EVKSLRPKLMT 649
N+ ++ + G + +F+ L E +++ + LGN+A + R ++
Sbjct: 90 TNIASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLD 147
Query: 650 SKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERW 709
+ L S ++ + ++ NA LS++ AK+ +
Sbjct: 148 CNILPPLLQLFSKQNR-LTMTRNAVWALSNLCRGKSPP---------PEFAKVSPCLN-- 195
Query: 710 PIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELL 769
+ LL V + + WAL+ L+ +K V++A G L
Sbjct: 196 --------------VLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDA-GVCRRL 239
Query: 770 QNLLDNEN 777
LL + +
Sbjct: 240 VELLMHND 247
Score = 63.8 bits (155), Expect = 9e-11
Identities = 34/283 (12%), Positives = 98/283 (34%), Gaps = 44/283 (15%)
Query: 527 NSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVA 586
+ + R A++ L++L C+ + + + L+ D
Sbjct: 159 SKQNRLTMTRNAVWALSNL-CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD----AC 213
Query: 587 WSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPK 646
W A+ ++D ++ G + L + +++ + +GN+ ++ +
Sbjct: 214 W-ALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDYKVVSPALRAVGNIVTGDDIQTQ 270
Query: 647 LMTS-KFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEA 705
++ + ++ +L+SS + I+ A +S+I + I+ + ++
Sbjct: 271 VILNCSALQSLLHLLSSPKESIKK--EACWTISNITAGNRA--QIQTVIDANIFPALISI 326
Query: 706 IERWPIDSERN--------------------INYRSFEPIIQLLRVYHTPECQHWSVWAL 745
++ + + + +P+ LL + ++ L
Sbjct: 327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT-VMDSKIVQVALNGL 385
Query: 746 ANLTKV----------YPEKYCQVVEAEGGIELLQNLLDNENK 778
N+ ++ YC ++E G++ ++ L +EN+
Sbjct: 386 ENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQ 428
Score = 39.9 bits (93), Expect = 0.003
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 27/117 (23%)
Query: 662 SKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRS 721
+ + + + +A VL++IAS + I +
Sbjct: 74 KRKENCTLQFESAWVLTNIASGNSL---------------QTRIV----------IQAGA 108
Query: 722 FEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
I+LL + Q +VWAL N+ V + L L +N+
Sbjct: 109 VPIFIELLS-SEFEDVQEQAVWALGNIA-GDSTMCRDYVLDCNILPPLLQLFSKQNR 163
Score = 37.6 bits (87), Expect = 0.013
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 25/144 (17%)
Query: 635 GNVAEVKSLRPKLMTSKFIEVFANLVSS-KSDGIEVSYNAAGVLSHIASDGPEAWTIRYP 693
G + ++ + + + ++++ S E +A + S P P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN------P 54
Query: 694 AREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYP 753
++V++ + R ++ L+ Q S W L N+
Sbjct: 55 PIDEVISTP-GVVAR----------------FVEFLKRKENCTLQFESAWVLTNIASGNS 97
Query: 754 EKYCQVVEAEGGIELLQNLLDNEN 777
++V G + + LL +E
Sbjct: 98 L-QTRIVIQAGAVPIFIELLSSEF 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 4e-11
Identities = 77/502 (15%), Positives = 145/502 (28%), Gaps = 159/502 (31%)
Query: 2 YLTVHRGNEPESLVDQCIRYLLHSVDRFTFKFHDVNKFRCEDVKFRCEDVKFPREISEKF 61
+L + N PE++++ ++ LL+ +D ++K R ++ E+
Sbjct: 186 WLNLKNCNSPETVLEM-LQKLLYQID----PNWTSRSDHSSNIKLRIHSIQ--AELRRLL 238
Query: 62 LS-MYEKSGGIVID-----SFVDTFLTKDITHMKSVKL----RNAEVSDSGMQKLLSHHV 111
S YE +V+ + F ++ S K+ R +V+D L +
Sbjct: 239 KSKPYENC-LLVLLNVQNAKAWNAF---NL----SCKILLTTRFKQVTDF----LSAATT 286
Query: 112 QELELIKCANV--SQASLE----VLNMSSDQLYSLSLGPH--CSMFPDCLESEVVVGEKQ 163
+ L + L+ L P + P L ++ E
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRRLS---IIAESI 337
Query: 164 RADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICT----- 218
R D D +K KL T++ S+
Sbjct: 338 R-DGLATWDN---------------WKHVNC----DKL-------TTIIESSLNVLEPAE 370
Query: 219 --QLYRDM---PHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273
+++ + P H+ ++ + S + + L L + K +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTI 426
Query: 274 SLP-LLRRLDISVSSDYP---------------DYGNYSPNPNDMLSYIIFKLP-HLVSL 316
S+P + L + + ++Y D + P D Y + HL
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSHIGHHL--- 481
Query: 317 DISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGASHRHDIP 376
R + F V D FL RHD
Sbjct: 482 --KNIEHPER-MTLF--------RMVFLD-----------FRFL-------EQKIRHDST 512
Query: 377 ALRVAGDC-NEAQLLIAAKAYI-DRPEMLQQVLNDLYH-IFRYDT------CVDIEH-AL 426
A +G N Q L K YI D ++++N + + + + D+ AL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 427 -----VVVLEALDTHLTERHIQ 443
+ EA + +Q
Sbjct: 573 MAEDEAIFEEA------HKQVQ 588
Score = 64.1 bits (155), Expect = 1e-10
Identities = 96/619 (15%), Positives = 185/619 (29%), Gaps = 146/619 (23%)
Query: 22 LLHSVDRFTFKFHDVNKFRCEDVK------FRCEDVKF----PREISE--KFLSMYEKSG 69
L D F V+ F C+DV+ E++ +S +
Sbjct: 22 LSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 70 GIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLLSHHVQEL----ELIKCANVSQA 125
++ FV+ L + + S ++ + S M ++ L ++ NVS+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR- 133
Query: 126 SLEVLNMSSDQLYSLSLGPH---CSMF---PDCLESEVVVGEK-QRADDFMMTDFEININ 178
L+ L L + + + +V + K Q DF + F +N+
Sbjct: 134 -LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNL- 189
Query: 179 GRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFL 238
S ++ + I S+S + + H L + L
Sbjct: 190 KNCNSPETVLEML---------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---L 237
Query: 239 FDNKDLSFLAEFKDTLVSLVLFNVSIVK--DNLDHICSLPLLRRLDISVSSDYPDYGNYS 296
+K +++ L LVL NV K + + C + L R V+
Sbjct: 238 LKSKP------YENCL--LVLLNVQNAKAWNAFNLSCKILLTTR-FKQVT---------- 278
Query: 297 PNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDR- 355
D LS H +SLD L V K Y+ L V
Sbjct: 279 ----DFLSAATTT--H-ISLDHHSMTLTPDEVKSLLLK------YLDCRPQDLPREVLTT 325
Query: 356 -PLEFLGLYGT--KHGASH----RHDIPALRVAGDCNEAQLLIAAKAYID--RPEMLQQV 406
P L + + G + +H N +L ++ ++ P +++
Sbjct: 326 NPR-RLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKM 374
Query: 407 LNDLYHIFRYDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLT 466
+ L +F I +L + + + + + + K+ ++
Sbjct: 375 FDRLS-VFPPS--AHIPTI---LLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQP 421
Query: 467 KRHIITTILNGMHM----HLEDDTMMRNGCL-------TLCQFKIPQDVQFDYDRLVRIL 515
K I+ + +++ LE++ + + T + Y
Sbjct: 422 KESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----FY 474
Query: 516 LHIITEMEHESN-SNGSNFVLRIAIYL-LNSL------ACQVDNAHKILLGRLGVIKKML 567
HI H N + L ++L L NA +L L +K
Sbjct: 475 SHI---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 568 RLI--KDRIEKQRCDDILE 584
I D ++ + IL+
Sbjct: 532 PYICDNDPKYERLVNAILD 550
Score = 51.8 bits (123), Expect = 7e-07
Identities = 84/645 (13%), Positives = 162/645 (25%), Gaps = 191/645 (29%)
Query: 226 HLTHLNLSKCMFLFDNKDL--SFLAEFKDTL----VSLVLFNVSIVKDNLDHICSLP--- 276
H H++ + KD+ F F D V + ++ + K+ +DHI
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAV 61
Query: 277 --LLRRLDI------------SVSSDYPDYG----NYSPNPND-MLSYIIFKLPHLVSLD 317
LR +Y + ++
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--------- 112
Query: 318 ISGTNLAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTK-HGASHRHDIP 376
I + F+ + L RP + + + G G +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT----WV 166
Query: 377 ALRVAGDCNEAQLLIAAKAY------IDRPEMLQQVLNDLYHIFRYDTCVDIEHALVVVL 430
AL V + Q + K + + PE + ++L L + + +H+ + L
Sbjct: 167 ALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 431 EALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDD----- 485
R + +K +P + L +L +
Sbjct: 226 RIHSIQAELRRL-------------LKSKPYENCL-------LVL--------LNVQNAK 257
Query: 486 --TMMRNGCLTLC---QFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIY 540
C L ++ + + + H +T E S
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----------L 306
Query: 541 LLNSLACQVDN----AHKILLGRLGVIKKMLRLIKDRIE---KQRCDDILEVAWSAMWNV 593
LL L C+ + RL +I + +R + CD + +
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-------- 358
Query: 594 TDETAINCARFLNNGGMELFLNCLQ-------Y-----FPE----------------KDE 625
+E LN L+ + FP
Sbjct: 359 ----------------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 626 LLRNMMGLLGNVAEVKSL---RPKLMTSKFIEVFANLVSSKSDGIEV------SYNAAGV 676
+ ++ L SL +PK T ++ L + + YN
Sbjct: 403 DVMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 677 -----LSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRV 731
L D I + + + + + F + Q +R
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---------FLDFRFLEQKIRH 509
Query: 732 YHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIE-LLQNLLDN 775
T S+ K Y + Y + + + E L+ +LD
Sbjct: 510 DSTAWNASGSILNTLQQLKFY-KPY--ICDNDPKYERLVNAILDF 551
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 64.3 bits (156), Expect = 8e-11
Identities = 46/310 (14%), Positives = 100/310 (32%), Gaps = 55/310 (17%)
Query: 483 EDDTMMRNGCLTL---CQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAI 539
+++R TL C+ K PQ + + L +I M+ E L A
Sbjct: 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE--------TLVDAC 278
Query: 540 YLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAI 599
+ ++ L+ + + + K+++ L+ + A A+ N+ +
Sbjct: 279 WAISYLSD-GPQEAIQAVIDVRIPKRLVELLSHE-----STLVQTPALRAVGNIVTGNDL 332
Query: 600 NCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNV-AEVKSLRPKLMTSKFIEVFAN 658
+N G + L K+ + + + N+ A ++ + I
Sbjct: 333 QTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390
Query: 659 LVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNIN 718
L+ + A +S+ +S G + ++ + ++
Sbjct: 391 LLEVAEY--KTKKEACWAISNASSGGLQR------------PDIIRYL----------VS 426
Query: 719 YRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPE----------KYCQVVEAEGGIEL 768
+P+ LL ++ AL N+ K+ + +E GG+E
Sbjct: 427 QGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485
Query: 769 LQNLLDNENK 778
+ N NEN
Sbjct: 486 IFNCQQNEND 495
Score = 64.3 bits (156), Expect = 9e-11
Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 43/298 (14%)
Query: 483 EDDTMMRNGCLTLCQF-KIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYL 541
+D + + Q D ++ ++ M + A +
Sbjct: 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----LQLEAAWA 154
Query: 542 LNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINC 601
L ++A ++ + ++L+ ++ E A A+ NV ++
Sbjct: 155 LTNIASGTSA-QTKVVVDADAVPLFIQLLYTG-----SVEVKEQAIWALGNVAGDSTDYR 208
Query: 602 ARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMT-SKFIEVFANLV 660
L ME L K L+R L N+ K +P S+ + A L+
Sbjct: 209 DYVLQCNAMEPILGLFN--SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 661 SSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYR 720
S E +A +S+++ E + I+ R
Sbjct: 267 YSMDT--ETLVDACWAISYLSDGPQE-------------------------AIQAVIDVR 299
Query: 721 SFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+ +++LL + + Q ++ A+ N+ QVV G + L+ LL + +
Sbjct: 300 IPKRLVELLS-HESTLVQTPALRAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSPKE 355
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 63.4 bits (153), Expect = 1e-10
Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 29/274 (10%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ V A L +++ D +KI + + ++RL++ K R D+ EV
Sbjct: 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR----KARDMDLTEVIT 155
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKD---------------ELLRNMMG 632
+WN++ +++ L + + +L N G
Sbjct: 156 GTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214
Query: 633 LLGNVAEVKSLRPKLMTSK--FIEVFANLVSSKSDGIEVS----YNAAGVLSHIASDGPE 686
L NV+ +S + + ++ +V ++ + N +L +++
Sbjct: 215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR 274
Query: 687 AWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALA 746
+E E I LL+ TP S A+
Sbjct: 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334
Query: 747 NLTKV---YPEKYCQVVEAEGGIELLQNLLDNEN 777
NL Y + E + + +LL NE+
Sbjct: 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368
Score = 45.3 bits (106), Expect = 6e-05
Identities = 35/307 (11%), Positives = 103/307 (33%), Gaps = 36/307 (11%)
Query: 482 LEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNG-----SNFVLR 536
L D+ ++ + + + +++ ++ + + E + + ++
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238
Query: 537 IAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDE 596
I+++ + Q D+ K++ + +++ + + E + + E A + N
Sbjct: 239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR--EIPQAERYQEAAPNVANNTGTS 296
Query: 597 TAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSL-----RPKLMTSK 651
A + ++++ L+ + +L G + N+ + R L K
Sbjct: 297 PARGYELLFQPEVVRIYISLLKE-SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355
Query: 652 FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPI 711
+ A+L++++ + V A+G L ++A D I A ++ + +
Sbjct: 356 ALSAIADLLTNEHE--RVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSW 413
Query: 712 DSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQN 771
+ + + + + E + + GIE L
Sbjct: 414 NFS--------------------EDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVL 452
Query: 772 LLDNENK 778
+ + N+
Sbjct: 453 INKSGNR 459
Score = 44.9 bits (105), Expect = 8e-05
Identities = 21/120 (17%), Positives = 41/120 (34%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+N V++ A L +LA N I + + K L + +D +
Sbjct: 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISIL 424
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKL 647
+ + V E + G+E + + ++ +R +L + K LR L
Sbjct: 425 NTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPL 484
Score = 39.6 bits (91), Expect = 0.004
Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 29/154 (18%)
Query: 625 ELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDG 684
+ R + L ++ + P + ++ + D V NAA L H+
Sbjct: 23 QHERGSLASLDSLRKGGP-PPPNWRQPELPEVIAMLGFRLD--AVKSNAAAYLQHLCYRN 79
Query: 685 PEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWA 744
+ + + + I ++ LL + E + A
Sbjct: 80 DKV--------------------KTDVRKLKGI-----PVLVGLLD-HPKKEVHLGACGA 113
Query: 745 LANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
L N++ + ++ G+ L LL
Sbjct: 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 1e-09
Identities = 92/579 (15%), Positives = 163/579 (28%), Gaps = 192/579 (33%)
Query: 9 NEPESLVDQCIRYLLHSVDRFTFKFHDVNKFRCEDVKFRCEDVKFPREISEKFLSMYEKS 68
+EP + + ++L + V + + +++
Sbjct: 52 DEPTTPAELVGKFLGY-VS---------------------------SLVEPSKVGQFDQV 83
Query: 69 GGIVIDSFVDTFL-TKDITHMKSVKL-RNAEVSDSGMQKLLSHHVQELE----------- 115
+ + F + +L DI H + KL + + + ++L+ +++
Sbjct: 84 LNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 116 --LIKCANVSQASLEVL-----NMSS--DQL------YSLSLGPHCSMFPDCLESEVVVG 160
L + A L + N ++L Y + +G + L +
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL--IR 200
Query: 161 EKQRADDFMMTDFEIN--INGRATSSGSLTYKQRGYILKAPKLRRFS--LIGHTLMSQ-- 214
A+ I + + + Y+L P S LIG ++
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDK------DYLLSIP----ISCPLIGVIQLAHYV 250
Query: 215 SICTQLYRDMPHLTHLNLSKCM--FLFDNKDL-------------SFLAEFKDTLVSLVL 259
L T L + ++ L SF + + VL
Sbjct: 251 VTAKLL-----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--VL 303
Query: 260 FNVSIVKDNLDHI---C--SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLV 314
F I C + P L S+ D + P+P MLS +
Sbjct: 304 F----------FIGVRCYEAYPNT-SLPPSILEDSLENNEGVPSP--MLSISNLTQEQVQ 350
Query: 315 SLDISGTN--LAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGTKHGASHR 372
++ TN L E S V + G + L L L K A
Sbjct: 351 DY-VNKTNSHLPAGKQVEISLVNGAK-NLVVS---GPP----QSLYGLNLTLRKAKAPSG 401
Query: 373 HD---IPA-----------LRVAGDCNEA----QLLIAAKAYIDRPEMLQQVL---NDL- 410
D IP L VA + LL+ A I++ + V D+
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVA-----SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 411 ---YHIFR-YDTCV---DIEHALV--VVLEALD----THLTERHI------QISGSANLF 451
Y F D V I +V ++ + T HI SG
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG----- 511
Query: 452 YIVKMKDRPVLSSLTKRHI----ITTILNG-MHMHLEDD 485
L LT R+ + I+ G + ++ +DD
Sbjct: 512 ----------LGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 53.9 bits (129), Expect = 2e-07
Identities = 61/397 (15%), Positives = 126/397 (31%), Gaps = 139/397 (35%)
Query: 459 RPVLSSLTKRHIITTIL--NGMHMH---LEDDTMMRNGCLTLCQFK--IPQDVQ-FDYDR 510
RP+ +L+ + +L L++ QF +P+ + F D
Sbjct: 7 RPL--TLSHGSLEHVLLVPTASFFIASQLQE------------QFNKILPEPTEGFAADD 52
Query: 511 --------LVRILLHIITEMEHESNSNGSNFVLRIAI------YL----LNSLACQVD-N 551
+ + L ++ + +E S + VL + + YL +++LA ++
Sbjct: 53 EPTTPAELVGKFLGYVSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 552 AHKILLGRLGVIK---KMLRLIKDRIEKQRCDDILEVAWSAMWN-VTDETAINCARFLNN 607
L+ +IK + K +K+ + SA++ V + A A F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKK--------SNSALFRAVGEGNAQLVAIF--- 160
Query: 608 GG---MELFLNCLQ-----YFPEKDELLRNMMGLLGNVA----EVKSLRPK--------- 646
GG + + L+ Y +L++ L + + + + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 647 ----------LMTS----KFIEV--FAN-LVSSKSDGI---EVSYNAAGVLSH------- 679
L++ I V A+ +V++K G E+ G H
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 680 --IA-SDGPEAWTIRYPAREKVLAKM----VEAIERWPI---------DSE--------- 714
IA +D E++ + + K + + V E +P DS
Sbjct: 281 VAIAETDSWESF---FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 715 ----RNINYRSFEPIIQLLRVYHTPECQHWSVWALAN 747
N+ + + H P + + +L N
Sbjct: 338 MLSISNLTQEQVQDYVNKTNS-HLPAGKQVEI-SLVN 372
Score = 42.3 bits (99), Expect = 8e-04
Identities = 63/386 (16%), Positives = 119/386 (30%), Gaps = 144/386 (37%)
Query: 124 QASLEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQ---RADDFMMTDFEININGR 180
Q S E M D LY S+ + RAD+ + +I
Sbjct: 1624 QGSQEQ-GMGMD-LYK--------------TSKAA---QDVWNRADNHFKDTYGFSILDI 1664
Query: 181 ATSS-GSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQ-LYRDMPHLTHLNLSKCMFL 238
++ +LT G K + ++I T++ + T+ +++++ + + F
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE----HSTSYTFR 1720
Query: 239 FDNKDLSFLAEFKDTLVSLVLFNVSIVKD-------NLD-----HICSLPLLRRLDISVS 286
+ L +F T +L L + +D D H SL
Sbjct: 1721 SEKGLL-SATQF--TQPALTLMEKAAFEDLKSKGLIPADATFAGH--SL----------- 1764
Query: 287 SDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYVTT 344
G Y+ L+ + + + LV + + RG+
Sbjct: 1765 ------GEYAA-----LASLADVMSIESLVEV------VFYRGMT--------------- 1792
Query: 345 DIPGLASRVDRPLEFLGLYGTKHGASHRHDIPAL---RVAGDCNEAQLLIAAKAYIDRPE 401
+ V R + G S+ + + A+ RVA ++ L + R
Sbjct: 1793 ----MQVAVPR---------DELGRSN-YGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 402 MLQQVLNDLYHIFRYDTCVDIEHALVVV---LEALDTHLTERHIQISGSANLFYIVKMKD 458
L +++N ++E+ V L ALDT +T
Sbjct: 1839 WLVEIVNY-----------NVENQQYVAAGDLRALDT-VTN------------------- 1867
Query: 459 RPVLSSLTKRHIITTILNGMHMHLED 484
VL+ + + I L + LE+
Sbjct: 1868 --VLNFIKLQKIDIIELQKS-LSLEE 1890
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 57.0 bits (137), Expect = 6e-09
Identities = 38/270 (14%), Positives = 85/270 (31%), Gaps = 39/270 (14%)
Query: 510 RLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRL 569
+R+L + E+ A+ LL L +DNA +L + ++
Sbjct: 32 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNA--ADFCQLSGMHLLVGR 89
Query: 570 IKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRN 629
+ + A + + A + L G + L L D +
Sbjct: 90 ----YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD-RDACDTVRVK 144
Query: 630 MMGLLGNVA-EVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAW 688
+ + + E ++ + + V + + ++ +A +L ++ PE
Sbjct: 145 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ--KLKVKSAFLLQNLLVGHPEH- 201
Query: 689 TIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANL 748
+ + S + + ++ L+R H + AL +L
Sbjct: 202 -------------------KGTLCSMGMV-----QQLVALVRTEH-SPFHEHVLGALCSL 236
Query: 749 TKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+P+ + E E G L+ LL + +
Sbjct: 237 VTDFPQGVRECREPELG---LEELLRHRCQ 263
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 55.6 bits (133), Expect = 5e-08
Identities = 45/319 (14%), Positives = 111/319 (34%), Gaps = 43/319 (13%)
Query: 467 KRHIITTILNGMHMHLEDDTMMRNGCLT-LCQFKIPQDVQFDYDRLVRILLHIITEME-- 523
++TT +N + + + + + L + IP++ + D + + ++
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497
Query: 524 ---HESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCD 580
S+ + +LN++ + K++ + G +K +LR+ + EK +
Sbjct: 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVV--QEGGVKALLRMALEGTEKGK-- 553
Query: 581 DILEVAWSAMWN--VTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVA 638
A A+ +T ++ + + + LN LQ E ++M L +
Sbjct: 554 ---RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610
Query: 639 EVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKV 698
+S+R +++ + + + ++ AA L ++ E V
Sbjct: 611 MNESVRQRIIKEQGVSKIEYYLMEDHL--YLTRAAAQCLCNLVMS------------EDV 656
Query: 699 LAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQ 758
+ +R + + L E ALA +T V + +
Sbjct: 657 IKMFEGNNDR-------------VKFLALLCEDED-EETATACAGALAIITSVSVKCCEK 702
Query: 759 VVEAEGGIELLQNLLDNEN 777
++ +++L L+ N +
Sbjct: 703 ILAIASWLDILHTLIANPS 721
Score = 55.2 bits (132), Expect = 7e-08
Identities = 76/494 (15%), Positives = 141/494 (28%), Gaps = 88/494 (17%)
Query: 310 LPHLVSLDISGTN----LAGRGVAEFSSKGSPDVPYVTTDIPGLASRVDRPLEFLGLYGT 365
+ L L S + A G+ + S G D + FL +
Sbjct: 332 VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL-IKPG 390
Query: 366 KHGASHRHDIPALR-VAGDCNEAQLLIAAKAYIDR---------PEMLQQVLNDLYHIFR 415
K R L + D + LI KA I L V+ ++
Sbjct: 391 KDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450
Query: 416 YDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDR---PVLSSLTK----- 467
++ ++ + + H+ E H I + + L +L K
Sbjct: 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN 510
Query: 468 -RHIITTILNGMHMHLED-DTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHE 525
+ +I +LN + E +++ G + L+R+
Sbjct: 511 SQELIARVLNAVCGLKELRGKVVQEGGVKA---------------LLRMA---------- 545
Query: 526 SNSNGSNFVLRIAIYLLNSLACQVDNAHKI-LLGRLGVIKKMLRLIKDRIEKQRCDDILE 584
G+ R A L + ++ L VI+ +L L++ + L
Sbjct: 546 --LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL- 602
Query: 585 VAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLR 644
A+ N+ R + G+ L L R L N+ + +
Sbjct: 603 ---MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL--YLTRAAAQCLCNLVMSEDVI 657
Query: 645 PKLMTSKFIEVFANLVS-SKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMV 703
+ + L + + E + AG L+ I S + + +
Sbjct: 658 KMFEGNN--DRVKFLALLCEDEDEETATACAGALAIITSVSVKC------------CEKI 703
Query: 704 EAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAE 763
AI W I+ L +P QH + + N+ E ++ E
Sbjct: 704 LAIASWL-------------DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE-T 749
Query: 764 GGIELLQNLLDNEN 777
+ELL L +
Sbjct: 750 DIMELLSGLGQLPD 763
Score = 48.3 bits (114), Expect = 1e-05
Identities = 40/334 (11%), Positives = 90/334 (26%), Gaps = 57/334 (17%)
Query: 494 TLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAH 553
++C +I +++ +D + I E + + +L +
Sbjct: 225 SVCLARIYENMYYDEAK--ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVG 282
Query: 554 KILLGRLGVIKKMLRLIKDRIEKQRC---------------------------------- 579
++ R G+++ +L + E Q+
Sbjct: 283 NQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSK 342
Query: 580 -DDILEVAWSAMWN--VTDETAINCARFLNNGGMELFLNCLQYF---PEKDELLRNMMGL 633
D I A + F + ++L C ++ + ++ R
Sbjct: 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402
Query: 634 LGNVAEVKSLRPKLMTSK-FIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRY 692
L + + KL+ K I +L + Y ++ + + +
Sbjct: 403 LAYLTLDAECKEKLIEDKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPE 460
Query: 693 PAREKVLAKMVEAIERWPIDSERNINYRS--------FEPIIQLLRVYHTPECQHWSVWA 744
AK E +D IN R + L + Q
Sbjct: 461 MIELAKFAKQHIPEEH-ELDDVDFINKRITVLANEGITTALCALAKTES-HNSQELIARV 518
Query: 745 LANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
L + + ++ V EGG++ L + +
Sbjct: 519 LNAVCGL--KELRGKVVQEGGVKALLRMALEGTE 550
Score = 36.0 bits (82), Expect = 0.056
Identities = 37/303 (12%), Positives = 89/303 (29%), Gaps = 45/303 (14%)
Query: 505 QFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRL---- 560
+ +R+L + +HE+ + + F L+ + L+ L + D+ L
Sbjct: 91 ELGVPWFMRVL-----DQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNRE 145
Query: 561 --GVIKKMLRLIKDR-IEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCL 617
++ ++ I DR I D ++E+ NV R + G+ L+
Sbjct: 146 IDTLLTCLVYSITDRTISGAARDGVIELI---TRNVHYTALEWAERLVEIRGLCRLLDVC 202
Query: 618 QYFPEKDELLRNMMGLLGNVAE---------VKSLRPKLMTSKFIEVFANLVSSK--SDG 666
D + M + G+ + +++ ++F + + K +
Sbjct: 203 SELE--DYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPD 260
Query: 667 IEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE------------ 714
+E ++ + + + ARE +L ++ +
Sbjct: 261 MESKVRVTVAITALLNGPLDVGNQVV-AREGILQMILAMATTDDELQQRVACECLIAASS 319
Query: 715 ----RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQ 770
I++ L + ++ L L + +G L
Sbjct: 320 KKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLA 379
Query: 771 NLL 773
Sbjct: 380 EAC 382
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 54.2 bits (130), Expect = 1e-07
Identities = 42/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%)
Query: 68 SGGIVIDSFVDTFLTKDITHMKSVKLRN-AEVSDSGMQKLLSH--HVQELELIKCANVSQ 124
IV D +D ++++KL + + G+ +++H ++ L + + + +
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
Query: 125 A------------SLEVLNMSSDQLYSLS------LGPHCSMFPDCLESEVVVGEKQRAD 166
SLEVLN + +S + +C L S V VG+ + +
Sbjct: 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR----SLVS-VKVGDFEILE 234
Query: 167 DFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPH 226
N+ S + + R+ +G + M + L+
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294
Query: 227 LTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSL-PLLRRLDISV 285
+ L+L + + + + + L L N I L+ + L+RL I
Sbjct: 295 IRKLDLLYALLE-TEDHCTLIQKCPN-LEVLETRN-VIGDRGLEVLAQYCKQLKRLRIER 351
Query: 286 SSDYPDYGNYSPNPNDM-LSYIIFKLPHLVSLDISGTNLAGRGVAEFSS 333
+D + + L + L + + +++ + +
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400
Score = 48.0 bits (114), Expect = 1e-05
Identities = 33/257 (12%), Positives = 73/257 (28%), Gaps = 50/257 (19%)
Query: 81 LTKDITHMKSVKLRNAEVSDSGMQKLLSHH---VQELELIKCANVSQASLEVLNMSSDQL 137
++ ++ +KSV R VSD + +L ++ L+L KC+ + L + ++
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKI 166
Query: 138 YSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILK 197
+L + S + ++ A + SL
Sbjct: 167 KTLLME-ESSFSEKDGKW---------------------LHELAQHNTSL---------- 194
Query: 198 APKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSL 257
++ F + +S + R+ L + + L A L
Sbjct: 195 --EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA----NLEEF 248
Query: 258 VLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
+++ + +L R+L S + + + + LD
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP---------NEMPILFPFAAQIRKLD 299
Query: 318 ISGTNLAGRGVAEFSSK 334
+ L K
Sbjct: 300 LLYALLETEDHCTLIQK 316
Score = 46.9 bits (111), Expect = 2e-05
Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 35/240 (14%)
Query: 98 VSDSGMQKLLSH--HVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLES 155
+ D G++ L + ++ L + + A+ E +S L +L+ G C LE
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG--CQE----LEY 382
Query: 156 EVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQS 215
V +T+ + T +L + L R I +
Sbjct: 383 MAVYVSD-------ITNESLE--SIGTYLKNLCD------FRLVLLDREERITDLPLDNG 427
Query: 216 ICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC-S 274
+ L L + LS++ ++ + ++L V + L
Sbjct: 428 VR-SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486
Query: 275 LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSK 334
P L++L++ ++ + KLP L L + G + G
Sbjct: 487 CPNLQKLEMR----------GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536
Score = 38.0 bits (88), Expect = 0.011
Identities = 35/260 (13%), Positives = 75/260 (28%), Gaps = 52/260 (20%)
Query: 86 THMKSVKLRNAEVSDSGMQKLLSH--HVQELELIKCANVSQASLEVLNMSSDQLYSLSLG 143
++ + L A + L+ +++ LE + LEVL QL L +
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIE 350
Query: 144 PHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRR 203
+ + E +V ++ L +G +L
Sbjct: 351 -RGADEQGMEDEEGLVSQR-----------------------GLIALAQG----CQELEY 382
Query: 204 FSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKD------LSFLAEFKDTLVSL 257
++ + ++ + + +L L D + L L
Sbjct: 383 MAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441
Query: 258 VLFNVS--IVKDNLDHICSL-PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLV 314
+ + L +I P +R + + Y ++ L P+L
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLG----------YVGESDEGLMEFSRGCPNLQ 491
Query: 315 SLDISGTNLAGRGVAEFSSK 334
L++ G + R +A +K
Sbjct: 492 KLEMRGCCFSERAIAAAVTK 511
Score = 31.8 bits (72), Expect = 1.1
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 14/132 (10%)
Query: 199 PKLRRFSLI--GHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE-FKDTLV 255
P+ F+LI T++ ++ L ++ + + + DL LA+ D L
Sbjct: 84 PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLE 141
Query: 256 SLVLFNVSIVKDN-LDHICS-LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHL 313
+L L S + L I + ++ L + S + + L + L
Sbjct: 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLME-ESSFSEKDGKW------LHELAQHNTSL 194
Query: 314 VSLDISGTNLAG 325
L+ T A
Sbjct: 195 EVLNFYMTEFAK 206
Score = 31.5 bits (71), Expect = 1.2
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 26/130 (20%)
Query: 220 LYRDMPHLTHLNLSKCMFLFD------------NKDLSFLAEFKDTLVSLVLFNVSIVKD 267
L R P+L L L ++ ++ L S+ + +
Sbjct: 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127
Query: 268 NLDHI--CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISG---TN 322
+LD + L L + S + G L I+ + +L + +
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDG---------LLSIVTHCRKIKTLLMEESSFSE 178
Query: 323 LAGRGVAEFS 332
G+ + E +
Sbjct: 179 KDGKWLHELA 188
Score = 29.5 bits (66), Expect = 5.0
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
P L++ + G ++I +P L +L + +DL +A + +
Sbjct: 488 PNLQKLEMRGCCFSERAI-AAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546
Query: 259 LFNVSIVKDN-----LDHICSLPLLRRLDISVSSDYPDY 292
V V ++H + L +D P
Sbjct: 547 SRRVPEVNQQGEIREMEHPAHILAYYSLAGQ-RTDCPTT 584
Score = 28.8 bits (64), Expect = 8.0
Identities = 7/71 (9%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 86 THMKSVKLRNAEVSDSGMQKLL----SHHVQELELIKCANVSQASLEVLNMSSDQLYS-L 140
++ + ++ S +G + +++ + + V+Q + +
Sbjct: 513 PSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYY 572
Query: 141 SLGPHCSMFPD 151
SL + P
Sbjct: 573 SLAGQRTDCPT 583
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 53.4 bits (128), Expect = 2e-07
Identities = 44/260 (16%), Positives = 82/260 (31%), Gaps = 30/260 (11%)
Query: 86 THMKSVKLRNAEVSDSGMQKLLSHHVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPH 145
+ + ++ L A V + KLL + L + A LEVL + L L + P
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPS 348
Query: 146 CSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKA-PKLRRF 204
+ + G + + + R ++ +L I + P + RF
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALIT-----IARNRPNMTRF 402
Query: 205 SLIGHTLMSQSICTQLYRDM---------PHLTHLNLSKCMFLFDNKDLSFLAEFKDTLV 255
L + T D+ L L+LS +K ++ + +
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL---LTDKVFEYIGTYAKKME 459
Query: 256 SLVLFNVSIVKDNLDHI-CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLV 314
L + + H+ LR+L+I P + L KL +
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIR----------DCPFGDKALLANASKLETMR 509
Query: 315 SLDISGTNLAGRGVAEFSSK 334
SL +S +++ K
Sbjct: 510 SLWMSSCSVSFGACKLLGQK 529
Score = 50.3 bits (120), Expect = 2e-06
Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 28/237 (11%)
Query: 89 KSVKLRNAEVSDSGMQKLLSH--HVQELELIKCANVSQASLEVLNMSSDQLYSLSLGPHC 146
+ ++L+ V+D ++ + + + L L C S L + + L L L
Sbjct: 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR-ES 166
Query: 147 SMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKA-PKLRRFS 205
+ + + + I+ S +L ++ P L+
Sbjct: 167 DVDDVSGHWLSHFPDTYTS----LVSLNISCLASEVSFSALE-----RLVTRCPNLKSLK 217
Query: 206 LIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNV--S 263
L + L + P L L S L+ L +
Sbjct: 218 LNR--AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 264 IVKDNLDHICS-LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDIS 319
V L + S L L++S Y+ + L ++ + P L L +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLS----------YATVQSYDLVKLLCQCPKLQRLWVL 322
Score = 48.4 bits (115), Expect = 7e-06
Identities = 22/157 (14%), Positives = 38/157 (24%), Gaps = 21/157 (13%)
Query: 199 PKLRRFSLIGHTLMSQSIC--TQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVS 256
L+ L + S + L LN+S L L L S
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 257 LVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSP------------------- 297
L L ++ + P L L + YS
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275
Query: 298 NPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSK 334
L + L +L++S + + + +
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312
Score = 42.2 bits (99), Expect = 7e-04
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 26/200 (13%)
Query: 98 VSDSGMQKLLSHHVQELELI--KCANVSQASLEVLNMSSDQLYSLSLGPHCSMFPDCLES 155
+++ G+ + S +LE + C ++ A+L + + + L PD L
Sbjct: 359 LTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417
Query: 156 EVVVGEKQRADDFMMTDFEININGRATS-------SGSLTYKQRGYILKAPKLRRFSLIG 208
E D SG LT K YI K +
Sbjct: 418 EP-------------LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464
Query: 209 HTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN 268
S + L L + C F +K L A +T+ SL + + S+
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFG--DKALLANASKLETMRSLWMSSCSVSFGA 522
Query: 269 LDHIC-SLPLLRRLDISVSS 287
+ +P L I
Sbjct: 523 CKLLGQKMPKLNVEVIDERG 542
Score = 38.3 bits (89), Expect = 0.008
Identities = 38/264 (14%), Positives = 85/264 (32%), Gaps = 35/264 (13%)
Query: 86 THMKSVKLRN--AEVSDSGMQKLLSH--HVQELELIKCANVSQA--------SLEVLNMS 133
T + S+ + +EVS S +++L++ +++ L+L + + + LE L
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243
Query: 134 --SDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDF-------EININGRATSS 184
+ ++ C E + G ++ + +N++ S
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303
Query: 185 GSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKD- 243
L + + PKL+R ++ + + L L L + +
Sbjct: 304 YDLVKL----LCQCPKLQRLWVL--DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357
Query: 244 ------LSFLAEFKDTLVSLVLFNVSIVKDNLDHI-CSLPLLRRLDISVSSDYPDYGNYS 296
L ++ L S++ F + L I + P + R + +
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417
Query: 297 PNPNDMLSYIIFKLPHLVSLDISG 320
+ I+ L L +SG
Sbjct: 418 EPLDIGFGAIVEHCKDLRRLSLSG 441
Score = 36.8 bits (85), Expect = 0.026
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 16/127 (12%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
L L + + + + + L LS C F L+ +A L L
Sbjct: 105 TWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELD 162
Query: 259 LFNVSIVKDNLDHICSL----PLLRRLDISVSSDYPDYGNYSPNPNDM-LSYIIFKLPHL 313
L + + + L L+IS + + L ++ + P+L
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNIS---------CLASEVSFSALERLVTRCPNL 213
Query: 314 VSLDISG 320
SL ++
Sbjct: 214 KSLKLNR 220
Score = 36.0 bits (83), Expect = 0.047
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 22/122 (18%)
Query: 225 PHLTHLNLSKCMFLFD------------NKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHI 272
P + + L D + ++ L + L + + D L+ I
Sbjct: 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125
Query: 273 C-SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEF 331
S + L +S + G L+ I +L LD+ +++
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDG---------LAAIAATCRNLKELDLRESDVDDVSGHWL 176
Query: 332 SS 333
S
Sbjct: 177 SH 178
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 51.0 bits (121), Expect = 1e-06
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 22/178 (12%)
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
S+ I Y + Q D + K + +LG I K++ L++ + ++ + A
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQ-----NVQQAAA 65
Query: 588 SAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKL 647
A+ N+ + N G+ ++ L+ E+ + + GLL N++ L+ +L
Sbjct: 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELKEEL 124
Query: 648 MTSKFIEVFANLVSSKSDGI--------------EVSYNAAGVLSHIASDGPEAWTIR 691
+ + V A+ V G EV +NA G L +++S T+R
Sbjct: 125 IADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Score = 40.6 bits (94), Expect = 0.002
Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 41/289 (14%)
Query: 470 IITTILNGMHMHLEDDTMMRNGCLTLC--QFKIPQDVQFDYDRLVRILLHIITEMEHESN 527
++ + N + DD + N L +++ +V Y +L + TE
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249
Query: 528 SNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAW 587
+ + + Y + + L I+ L L+ + D LE
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK----SKKDATLEACA 305
Query: 588 SAMWNVT-----DETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKS 642
A+ N+T + ++ L G+ LQ +++R+ LL N++
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSRHPL 363
Query: 643 LRPKLMTSKFIEVFANLVSS---KSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVL 699
L + F EV L S S+ ++ +A + ++ + P+
Sbjct: 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL------------ 411
Query: 700 AKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANL 748
S + II L R +P+ + L+++
Sbjct: 412 --------AKQYFSSSML-----NNIINLCRSSASPKAAEAARLLLSDM 447
Score = 40.6 bits (94), Expect = 0.002
Identities = 37/300 (12%), Positives = 79/300 (26%), Gaps = 36/300 (12%)
Query: 509 DRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLR 568
DR++ + S V A L +L+ + G+I ++
Sbjct: 134 DRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS-GLIDSLMA 192
Query: 569 LIKDRIEKQRCDD-ILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQY-------F 620
+++ + RCDD +E + N++ +
Sbjct: 193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 621 PEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHI 680
+ N L L S I + NL+ S AG L ++
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK-SKKDATLEACAGALQNL 311
Query: 681 ASDGPEAWTIRYPAR------------------EKVLAKMVEAIERWPIDSE--RNINYR 720
+ + V+ + R + +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ 371
Query: 721 SFEPIIQLL-----RVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775
F + +LL ++ + + + + NL P+ Q + + + NL +
Sbjct: 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS-SMLNNIINLCRS 430
Score = 40.2 bits (93), Expect = 0.002
Identities = 32/267 (11%), Positives = 77/267 (28%), Gaps = 34/267 (12%)
Query: 527 NSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKML--------RLIKDRIEKQR 578
G+ + + LL +L+ + +++ L V+ + + +
Sbjct: 96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155
Query: 579 CDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEK----DELLRNMMGLL 634
++ A + N++ A +G ++ + +Q D+ + N M +L
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215
Query: 635 GNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPA 694
N++ + + + ++ G S+ +
Sbjct: 216 HNLSY--------RLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKM---------- 257
Query: 695 REKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLT----K 750
+ E P S + + + L+ AL NLT
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317
Query: 751 VYPEKYCQVVEAEGGIELLQNLLDNEN 777
+ + E G+ + LL + N
Sbjct: 318 MSSGMSQLIGLKEKGLPQIARLLQSGN 344
Score = 39.8 bits (92), Expect = 0.003
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 723 EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+Q L + Q + + + QV + GGI L +LL + N+
Sbjct: 5 PKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQ 58
Score = 35.6 bits (81), Expect = 0.057
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 31/151 (20%)
Query: 624 DELLRNMMGLLGNVAEVKS-LRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682
++ + + + ++ I +L+ S + V AAG L ++
Sbjct: 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--NVQQAAAGALRNLVF 73
Query: 683 DGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSV 742
K+ + I + LLR E Q
Sbjct: 74 RSTT---------NKLETRRQNGIR----------------EAVSLLRRTGNAEIQKQLT 108
Query: 743 WALANLTKVYPEKYCQVVEAEGGIELLQNLL 773
L NL+ K + +L + +
Sbjct: 109 GLLWNLSSTDELK---EELIADALPVLADRV 136
Score = 34.0 bits (77), Expect = 0.16
Identities = 18/115 (15%), Positives = 26/115 (22%), Gaps = 26/115 (22%)
Query: 663 KSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSF 722
S + A + H A K + I
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESA---------KQQVYQLGGIC--------------- 47
Query: 723 EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
++ LLR Q + AL NL + G E + L N
Sbjct: 48 -KLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 46.4 bits (110), Expect = 2e-05
Identities = 42/220 (19%), Positives = 82/220 (37%), Gaps = 43/220 (19%)
Query: 68 SGGIVIDSFVDTFLTKDITHMKSVKLRNAEVSDSGMQKLLSH-HVQELELIKCANVSQAS 126
S ++ S + L++ + ++++ L +SD + L + ++ L L C+ S+ +
Sbjct: 101 SNSVIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159
Query: 127 LEVLNMSSDQLYSLSLGPHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGS 186
L+ L S +L L+L C F T+ + + A + S
Sbjct: 160 LQTLLSSCSRLDELNLS-WCFDF---------------------TEKHVQV---AVAHVS 194
Query: 187 LTYKQRGYILKAPKLRRFSLIG-HTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLS 245
+ + +L G + +S + L R P+L HL+LS + L N
Sbjct: 195 ------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-KNDCFQ 241
Query: 246 FLAEFKDTLVSLVLFNVSIVKDN-LDHICSLPLLRRLDIS 284
+ L L L + L + +P L+ L +
Sbjct: 242 EFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280
Score = 45.6 bits (108), Expect = 3e-05
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 194 YILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDT 253
+ K L R +L G + S+ L L LNLS C + +A +T
Sbjct: 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196
Query: 254 LVSLVLFN-VSIVKDN-LDHIC-SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKL 310
+ L L ++ + L + P L LD+S S + F+L
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS----------DSVMLKNDCFQEFFQL 246
Query: 311 PHLVSLDISG-TNLAGRGVAEFSS 333
+L L +S ++ + E
Sbjct: 247 NYLQHLSLSRCYDIIPETLLELGE 270
Score = 41.8 bits (98), Expect = 6e-04
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 221 YRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRR 280
+ + H++LS + + L + L +L L + + ++ + L R
Sbjct: 89 HFSPFRVQHMDLSNS--VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146
Query: 281 LDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGT-NLAGRGVAEFSSKGSP 337
L++S S + ++ L ++ L L++S + + V + S
Sbjct: 147 LNLSGCSGFSEFA---------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 43.3 bits (102), Expect = 7e-05
Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 6/118 (5%)
Query: 173 FEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSI---CTQLYRDMPHLTH 229
+ + G +++ L L ++ + I + ++
Sbjct: 30 WLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEK 89
Query: 230 LNLSKCMFLFDN--KDLSFLAEFKDTLVSLVLFNVSIVKDN-LDHICSLPLLRRLDIS 284
+ L KC ++ D + LS L + +++ + + + V D + + L+ L +S
Sbjct: 90 IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLS 147
Score = 30.2 bits (68), Expect = 1.8
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 86 THMKSVKLRN-AEVSDSGMQKL-----LSHHVQELELIKCANVSQASLEVLNMSSDQLYS 139
+++ ++L + D +++L L + E+E+I C NV+ + L L
Sbjct: 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKY 143
Query: 140 LSL 142
L L
Sbjct: 144 LFL 146
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 43.8 bits (103), Expect = 7e-05
Identities = 34/273 (12%), Positives = 76/273 (27%), Gaps = 72/273 (26%)
Query: 503 DVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGV 562
D++ +R V +L + + A + C + + + +L
Sbjct: 5 DMEMTLERAVSML----------EADHMLPSRISAAATFIQHE-CFQKSEARKRVNQLRG 53
Query: 563 IKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPE 622
I K+L+L+K + +D+ A+ N+ E N G+ L L+
Sbjct: 54 ILKLLQLLKVQ-----NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLK---- 104
Query: 623 KDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIAS 682
++ +E G+L +++S
Sbjct: 105 ----------------------------------------QTRDLETKKQITGLLWNLSS 124
Query: 683 DGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSV 742
+ + A + ++ WP N I +
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI------------FYNVT 172
Query: 743 WALANLTKVYPEKYCQVVEAEGGIELLQNLLDN 775
L N++ + + +G I+ L + +
Sbjct: 173 GCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205
Score = 36.9 bits (85), Expect = 0.014
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 27/126 (21%)
Query: 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPID 712
+E +++ + AA + H EA + + I
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEA---------RKRVNQLRGIL----- 55
Query: 713 SERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNL 772
++QLL+ + Q AL NL + +V E G+ L +
Sbjct: 56 -----------KLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNKLEVAEL-NGVPRLLQV 102
Query: 773 LDNENK 778
L
Sbjct: 103 LKQTRD 108
Score = 31.1 bits (70), Expect = 1.1
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 466 TKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHE 525
TK+ I + N + M+ LTL + I + + + +
Sbjct: 111 TKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD---- 166
Query: 526 SNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDD-ILE 584
+ L +++ + K + G+I ++ ++ I + DD E
Sbjct: 167 --------IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATE 218
Query: 585 VAWSAMWNVT 594
+ N++
Sbjct: 219 NCVCILHNLS 228
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 40.3 bits (95), Expect = 0.003
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 16/115 (13%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKD--NLDHICSLPLLRRL 281
+ L L LS N +S +L SL L S+ L + S L+ L
Sbjct: 76 LTGLESLFLSNSHI---NGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 282 DISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGS 336
++S N P + KL L LD+S +++G V +
Sbjct: 132 NVS--------SNTLDFPGKVS--GGLKLNSLEVLDLSANSISGANVVGWVLSDG 176
Score = 34.1 bits (79), Expect = 0.20
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 22/107 (20%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSI---VKDNLDHICSLPLLRR 280
L LN+S F +S + +L L L SI L+
Sbjct: 125 CSGLKFLNVSSNTLDFPG-KVSGGLKLN-SLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 281 LDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
L IS GN + + +L LD+S N +
Sbjct: 183 LAIS--------GNKISGDVD-------VSRCVNLEFLDVSSNNFST 214
Score = 31.8 bits (73), Expect = 0.91
Identities = 23/147 (15%), Positives = 40/147 (27%), Gaps = 31/147 (21%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
L+ ++ + + L L+LS + D L
Sbjct: 126 SGLKFLNV-SSNTLDFPGKVSGGLKLNSLEVLDLSANSI---SGANVVGWVLSDGCGELK 181
Query: 259 LFNVSIVKDNLDH---ICSLPLLRRLDISV---SSDYPDYGNYSPNPNDMLSYI------ 306
+S + + + L LD+S S+ P G+ S L ++
Sbjct: 182 HLAIS--GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS-----ALQHLDISGNK 234
Query: 307 --------IFKLPHLVSLDISGTNLAG 325
I L L+IS G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVG 261
Score = 28.7 bits (65), Expect = 8.7
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
C + +D+S + S + + L L SL +S +++ G
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSS--------LLSLTGLESLFLSNSHING 91
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 39.2 bits (91), Expect = 0.004
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 216 ICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICS 274
+ ++P L LNLS L+ D+S + + L L L + LD I
Sbjct: 161 TLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219
Query: 275 LPLLRRLDIS---VSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
L L L + + + D Y +S I + P L+ LD
Sbjct: 220 LKL-EELWLDGNSLCDTFRDQSTY-------ISAIRERFPKLLRLD 257
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 39.1 bits (91), Expect = 0.004
Identities = 45/244 (18%), Positives = 71/244 (29%), Gaps = 56/244 (22%)
Query: 88 MKSVKLRNAEVSDSGMQKLLSH----HVQELELIKCANVSQASLEVLNMSSDQLYSLSLG 143
+K + +R A + + L +QEL L A +L + L L+L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 144 PHCSMFPDCLESEVVVGEKQRADDFMMTDFEININGRATSSGSLTYKQRGYILKAPKLRR 203
++ R L P L+
Sbjct: 130 ------------------------------NVSWATRDAWLAEL------QQWLKPGLKV 153
Query: 204 FSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFK-DTLVSLVLFN- 261
S+ C Q+ R P L+ L+LS L + +S L K TL L L N
Sbjct: 154 LSIA-QAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211
Query: 262 --VSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDIS 319
+ + L+ LD+S + + L SL++S
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLS-------HNSLRDAAGAPSCD---WPSQLNSLNLS 261
Query: 320 GTNL 323
T L
Sbjct: 262 FTGL 265
Score = 36.0 bits (83), Expect = 0.040
Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 19/137 (13%)
Query: 195 ILKAPKLRRFSLIGHTLMSQSICTQLYR--DMPHLTHLNLSKCMFLFDNKDLSFLAEFKD 252
I+K+ L+R ++ + I R + L L L L
Sbjct: 64 IIKSLSLKRLTV-RAARIPSRILFGALRVLGISGLQELTLENLEVT-GTAPPPLLEATGP 121
Query: 253 TLVSLVLFNVSIVKDNLD----HICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIF 308
L L L NVS + P L+ L I+ +S + +
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA--------QAHS---LNFSCEQVR 170
Query: 309 KLPHLVSLDISGTNLAG 325
P L +LD+S G
Sbjct: 171 VFPALSTLDLSDNPELG 187
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 39.2 bits (90), Expect = 0.005
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 196 LKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLS--KCMFLFDN--KDLSFLAEFK 251
P L+ +I L + L D+P+L L L + FD L
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249
Query: 252 D--TLVSLVLFNVSIVKDNLDHICS---LPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI 306
L L + + ++ LP L +DIS G + +L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS-------AGVLTDEGARLLLDH 302
Query: 307 IFKLPHLVSLDISGTNLAGRGVAEFSS 333
+ K+ HL +++ L+ E
Sbjct: 303 VDKIKHLKFINMKYNYLSDEMKKELQK 329
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 36.9 bits (86), Expect = 0.030
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMF-LFDNKDLSFLAEFKDTLVSL 257
L L G + Q + Q +R + ++ + LS + + + L L
Sbjct: 405 GHLEVLDL-GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS----LQRL 459
Query: 258 VLFNVSI--VKDNLDHICSLPLLRRLDISVSSDYPDYGNY-SPNPNDMLSYIIFKLPHLV 314
+L V++ V + L L LD+S N + +DML L L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLS--------NNNIANINDDMLE----GLEKLE 507
Query: 315 SLDISGTNL 323
LD+ NL
Sbjct: 508 ILDLQHNNL 516
Score = 33.8 bits (78), Expect = 0.25
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 17/116 (14%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273
+ + + L L L+ + L ++ +L L N + +
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243
Query: 274 SLPL--LRRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
L L LD+S N + LP L + N+
Sbjct: 244 GLKWTNLTMLDLS--------YNNLNVVGND-----SFAWLPQLEYFFLEYNNIQH 286
Score = 31.5 bits (72), Expect = 1.2
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 222 RDMPHLTHLNLSKCMF--LFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLR 279
+ HL L+L ++ L + + + L ++ + +P L+
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGL----ENIFEIYLSYNKYLQLTRNSFALVPSLQ 457
Query: 280 RLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
RL + N + S L +L LD+S N+A
Sbjct: 458 RLMLR--------RVALKNVDSSPS-PFQPLRNLTILDLSNNNIAN 494
Score = 31.5 bits (72), Expect = 1.3
Identities = 27/142 (19%), Positives = 40/142 (28%), Gaps = 42/142 (29%)
Query: 222 RDMPHLTHLNLSKCMF------------------LFDNKDLSFLAE--FKDT--LVSLVL 259
LT L++ L N+ LS L++ F L L L
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHL 104
Query: 260 FNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYII----FKLPHLVS 315
+ SI K + L LD+S N LS +L +L
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLS--------HN-------GLSSTKLGTQVQLENLQE 149
Query: 316 LDISGTNLAGRGVAEFSSKGSP 337
L +S + E +
Sbjct: 150 LLLSNNKIQALKSEELDIFANS 171
Score = 29.6 bits (67), Expect = 5.0
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 28/126 (22%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS---IVKDNLDHICSLPLLRR 280
+P L L L + K++ L +L + ++S I N D + L L
Sbjct: 453 VPSLQRLMLRRVAL----KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508
Query: 281 LD-----ISVSSDYPDYGNYSPNPNDM-------LSY---------IIFKLPHLVSLDIS 319
LD ++ + + G + L + L L +D+
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568
Query: 320 GTNLAG 325
NL
Sbjct: 569 LNNLNT 574
Score = 29.2 bits (66), Expect = 6.1
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSF----LAEFKD--TLVSLVLFNVSIVKDNLDHICSL 275
+ ++ +LNL + S F+ L L + + I + L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 276 PLLRRLDIS---VSSDYPDYGNYSPNPNDMLSYI--------------IFKLPHLVSLDI 318
L+ L +S S + + L + L HL LD+
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 319 SGTNLAG 325
+
Sbjct: 413 GLNEIGQ 419
Score = 28.8 bits (65), Expect = 9.5
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSI--VKDNLDHICSLPLLR 279
+L L+LS L K + + + L L+L N I +K I + L+
Sbjct: 118 VKQKNLITLDLSHNG-LSSTKLGTQVQ--LENLQELLLSNNKIQALKSEELDIFANSSLK 174
Query: 280 RLDISVSSDYPDYGN--YSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSS 333
+L++S N +P + L L ++ L +
Sbjct: 175 KLELS--------SNQIKEFSPGC-----FHAIGRLFGLFLNNVQLGPSLTEKLCL 217
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 34.3 bits (79), Expect = 0.062
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 22/100 (22%)
Query: 224 MPHLTHLNLSKCMFLFDNK---DLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLR 279
+P L L LS +N+ L LAE L L L + L+ + L L+
Sbjct: 70 LPKLKKLELS------ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
Query: 280 RLDISVS--SDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
LD+ ++ DY + LP L LD
Sbjct: 124 SLDLFNCEVTNLNDY----------RESVFKLLPQLTYLD 153
Score = 32.0 bits (73), Expect = 0.33
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 215 SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN---LDH 271
L +P+LTHLNLS L D L L + + L SL LFN + N
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLEC-LKSLDLFNCEVTNLNDYRESV 142
Query: 272 ICSLPLLRRLD 282
LP L LD
Sbjct: 143 FKLLPQLTYLD 153
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 35.8 bits (83), Expect = 0.063
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 16/128 (12%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
P L L + L + C+Q L +L+LS + + + L + L L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ----LEHLD 402
Query: 259 LFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
+ ++ + SL L LDIS + + I L L L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDIS--------HT---HTRVAFNGIFNGLSSLEVLK 451
Query: 318 ISGTNLAG 325
++G +
Sbjct: 452 MAGNSFQE 459
Score = 30.4 bits (69), Expect = 2.8
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 21/125 (16%)
Query: 213 SQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHI 272
L+ + +++ +L + KD S+ L L N + +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF----GWQHLELVNCKFGQFPTLKL 324
Query: 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFS 332
SL L + + + LP L LD+S L+ +G S
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVD----------------LPSLEFLDLSRNGLSFKGCCSQS 368
Query: 333 SKGSP 337
G+
Sbjct: 369 DFGTT 373
Score = 30.0 bits (68), Expect = 3.5
Identities = 26/128 (20%), Positives = 39/128 (30%), Gaps = 37/128 (28%)
Query: 222 RDMPHLTHLNLSKCMF------------------LFDNKDLSFLAE--FKDT--LVSLVL 259
P L L+LS+C L N + LA F L LV
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107
Query: 260 FNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLD 317
++ I L L+ L+++ N S + S L +L LD
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVA--------HNLIQSFKLPEYFS----NLTNLEHLD 155
Query: 318 ISGTNLAG 325
+S +
Sbjct: 156 LSSNKIQS 163
Score = 29.2 bits (66), Expect = 5.5
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 24/109 (22%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNL-----DHICSLPL 277
D+P L L+LS+ F ++ SL ++S N + L
Sbjct: 345 DLPSLEFLDLSRNGLSF----KGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQ 397
Query: 278 LRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISGTNLAG 325
L LD + N M + +F L +L+ LDIS T+
Sbjct: 398 LEHLDFQ--------HS---NLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Score = 29.2 bits (66), Expect = 6.9
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 24/111 (21%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS------IVKDNLDHICSL 275
+ L LN++ + F L +L ++S I +L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 276 PLLR-RLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
PLL LD+S+ NP + + FK L L + +
Sbjct: 176 PLLNLSLDLSL------------NPMNFIQPGAFKEIRLHKLTLRNNFDSL 214
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 34.5 bits (80), Expect = 0.071
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 24/114 (21%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
M LT++ L+ DL+ + + + L + N+ N + I L L RL
Sbjct: 42 QMNSLTYITLANINV----TDLTGIEYAHN-IKDLTINNIHA--TNYNPISGLSNLERLR 94
Query: 283 IS---VSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSS 333
I V+SD + L L LDIS + + + ++
Sbjct: 95 IMGKDVTSDKIPN--------------LSGLTSLTLLDISHSAHDDSILTKINT 134
Score = 33.0 bits (76), Expect = 0.22
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
+ +L L + + + L+ +L L + + + L I +LP + +D
Sbjct: 86 GLSNLERLRIMGKDV--TSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+S N ++ I + LP L SL+I +
Sbjct: 143 LSY--------------NGAITDIMPLKTLPELKSLNIQFDGV 171
Score = 29.9 bits (68), Expect = 2.1
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
+P + ++LS + D+ L + L SL + + + I P L +L
Sbjct: 134 TLPKVNSIDLSYNGAI---TDIMPLKTLPE-LKSLNIQFDGV--HDYRGIEDFPKLNQLY 187
Query: 283 IS 284
Sbjct: 188 AF 189
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 35.2 bits (81), Expect = 0.093
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 22/130 (16%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFL-FDNKDLSFLAEFKDTLVSL 257
+L+ L +I + +R++P+L L+L L L L
Sbjct: 48 EQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH----LFEL 102
Query: 258 VLFNVSIVKDNLDH--ICSLPLLRRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHL 313
L+ + L +L L RLD+S N S + KL L
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLS--------KNQIRSLYLHPSFG----KLNSL 150
Query: 314 VSLDISGTNL 323
S+D S +
Sbjct: 151 KSIDFSSNQI 160
Score = 32.9 bits (75), Expect = 0.50
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 27/149 (18%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKC-------------MFLFDNKDLS 245
PK+ L + + I Q ++ + L L+L +FL NK L
Sbjct: 338 PKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK-LV 394
Query: 246 FLAEFKDTLVSLVLFNVSIVKDNLDHI-CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLS 304
L + T + L + ++ + +P L+ L ++ +S D
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN-------QNRFSSCSGDQT- 446
Query: 305 YIIFKLPHLVSLDISGTNLAGRGVAEFSS 333
+ P L L + L E
Sbjct: 447 --PSENPSLEQLFLGENMLQLAWETELCW 473
Score = 32.5 bits (74), Expect = 0.71
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 20/108 (18%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICS-----LP 276
+PHL L L++ F + D + +L L L + +C L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTP--SENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480
Query: 277 LLRRLDISVSSDYPDYGNY-SPNPNDMLSYIIFKLPHLVSLDISGTNL 323
L+ L ++ NY + P + S L L L ++ L
Sbjct: 481 HLQVLYLN--------HNYLNSLPPGVFS----HLTALRGLSLNSNRL 516
Score = 31.3 bits (71), Expect = 1.5
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Query: 222 RDMPHLTHLNLSKCMFL-FDNKDLSFLAEFKDTLVSLVL-FNVSIVKDNLDHICSLPLLR 279
+ + L LS FL + L L L + + + + +LP LR
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQ----LQLLELGSQYTPLTIDKEAFRNLPNLR 76
Query: 280 RLDISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISGTNLAGRGVAEFSSKGSP 337
LD+ + L F+ L HL L + L+ + + +
Sbjct: 77 ILDLGS------------SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Score = 29.8 bits (67), Expect = 3.9
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 20/121 (16%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN-LDHI 272
+ + + +P + +++L K FK L L ++ DN L I
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQT-----FKF-LEKLQTLDLR---DNALTTI 377
Query: 273 CSLPLLRRLD-----ISVSSDYPDYGNY---SPNPNDMLSYIIF--KLPHLVSLDISGTN 322
+P + + + N S N + L + F ++PHL L ++
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 323 L 323
Sbjct: 438 F 438
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 34.7 bits (80), Expect = 0.11
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 24/109 (22%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFL-AEFKDTLVSLVLFNVS-----IVKDNLDHICSL 275
+ + L L+LS+ + + + K SL +S ++ + + +L
Sbjct: 331 QHLKSLEFLDLSENLM----VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386
Query: 276 PLLRRLDISVSSDYPDYGNY-SPNPNDMLSYIIFKLPHLVSLDISGTNL 323
L LDIS N P P+ + L++S T +
Sbjct: 387 KNLTSLDIS--------RNTFHPMPDS-----CQWPEKMRFLNLSSTGI 422
Score = 28.9 bits (65), Expect = 8.3
Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 48/236 (20%)
Query: 125 ASLEVLNMSSDQLYSLSLG---------------PHCSMFPDCLESEVVVGEKQRADDFM 169
SL L + + L + + + + D
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 170 MTDFEININGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTH 229
+ F+ + S + K F T S + +L R + L+
Sbjct: 208 LARFQFSPLPVDEVSSPM------------KKLAFRGSVLTDESFNELLKLLRYILELSE 255
Query: 230 LNLSKCMFL----FDNKDLSFLAEFKD----TLVSLVLFNVSIVKDNLDHICSLPLLRRL 281
+ C F+ + ++E T+ L + + D L ++R+
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 282 DISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISGTNLAGRGVAEFSSKGS 336
+ N + ++ + L L LD+S + + + KG+
Sbjct: 316 TVE---------N---SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 32.7 bits (75), Expect = 0.15
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 224 MPHLTHLNLSKCMFLFDNK---DLSFLAEFKDTLVSLVLFNVSIVK-DNLDHICSLPLLR 279
+ L L LS DN+ L LAE L L L I ++ + L L+
Sbjct: 63 LNKLKKLELS------DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116
Query: 280 RLDIS---VSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
LD+ V+ + DY + LP L LD
Sbjct: 117 SLDLFNCEVT-NLNDY----------RENVFKLLPQLTYLD 146
Score = 30.4 bits (69), Expect = 0.99
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 215 SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN---LDH 271
L P+LTHLNLS + D + L + ++ L SL LFN + N +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLEN-LKSLDLFNCEVTNLNDYRENV 135
Query: 272 ICSLPLLRRLD 282
LP L LD
Sbjct: 136 FKLLPQLTYLD 146
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 33.9 bits (78), Expect = 0.25
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAE-FKDT--LVSLVLFNVSIVKDNLDHICSLPLL 278
+ HL++L L+ N SF F L +LV + I L L
Sbjct: 77 HGLHHLSNLILT------GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 279 RRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLDISGTNL 323
++L+++ N+ S S L +LV +D+S +
Sbjct: 131 KKLNVA--------HNFIHSCKLPAYFS----NLTNLVHVDLSYNYI 165
Score = 32.7 bits (75), Expect = 0.51
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 25/164 (15%)
Query: 176 NINGRATSSGSLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKC 235
I G +L + + + S + + +++ ++L+
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA-- 293
Query: 236 MFLFDNKDLSFLAE--FKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYG 293
+ +L + SL + + LP L+ L ++
Sbjct: 294 ----GVS-IKYLEDVPKHFKWQSLSIIRCQL---KQFPTLDLPFLKSLTLT--------M 337
Query: 294 NYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSP 337
N LP L LD+S L+ G +S G+
Sbjct: 338 NKGSISFK-----KVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Score = 29.6 bits (67), Expect = 5.1
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 24/109 (22%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS------IVKDNLDHICSL 275
+ L LN++ A F L +LV ++S I ++L +
Sbjct: 125 GQLITLKKLNVAHNFI----HSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 276 P-LLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323
P + LD+S+ NP D + F+ L L + G
Sbjct: 180 PQVNLSLDMSL------------NPIDFIQDQAFQGIKLHELTLRGNFN 216
Score = 29.2 bits (66), Expect = 6.0
Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 19/140 (13%)
Query: 186 SLTYKQRGYILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFL-FDNKDL 244
+ G L L + G++ + + ++ + +LT L+LSKC
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSF-KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 245 SFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNY-SPNPNDML 303
L L L + + +++ + H L L LD S N + +
Sbjct: 494 DTLHR----LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS--------FNRIETSKGILQ 541
Query: 304 SYIIFKLPHLVSLDISGTNL 323
L +++ ++
Sbjct: 542 H----FPKSLAFFNLTNNSV 557
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 33.4 bits (77), Expect = 0.28
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE---FKDTLVSLVLFNVSIVKDNLD 270
+ L + L+L C L+ TL L L + + L
Sbjct: 74 HCVLQGLQTPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131
Query: 271 HICSLPL-----LRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
+C L L +L + S L+ ++ P L +S ++
Sbjct: 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEP-------LASVLRAKPDFKELTVSNNDINE 184
Query: 326 RGVAEFSS 333
GV
Sbjct: 185 AGVRVLCQ 192
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 32.7 bits (75), Expect = 0.28
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 30/118 (25%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLDI 283
M +L L+L + + K + L DTL L + I L I L LR L +
Sbjct: 69 MENLRILSLGRNLI----KKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYM 122
Query: 284 SVS--SDYPDYGNYSPNPN----------------------DMLSYIIFKLPHLVSLD 317
S + +++ + + + ++ +LP+L LD
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 33.1 bits (76), Expect = 0.41
Identities = 13/142 (9%), Positives = 32/142 (22%), Gaps = 19/142 (13%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
+ L L L N+ L +S + + P D
Sbjct: 103 QLTELEVLALGSHGEKV-NERLFGPKGISA-NMSDEQKQKMRMHYQKTFVDYDPREDFSD 160
Query: 283 ISVSSDYPDYGNYSPNP--------------NDMLSYI---IFKLPHLVSLDISGTNLAG 325
+ D S ++ ++++ + +L L + +
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA 220
Query: 326 RGVAEFSSKGSPDVPYVTTDIP 347
+ E + +
Sbjct: 221 ENICEAWENENSEYAQQYKTED 242
Score = 30.4 bits (69), Expect = 2.6
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 38/115 (33%)
Query: 224 MPHLTHLNLSKCMF------LFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNL------DH 271
+P+L ++LS F ++ TL + N + N +
Sbjct: 512 LPYLVGIDLSYNSFSKFPTQPLNSS----------TLKGFGIRNQRDAQGNRTLREWPEG 561
Query: 272 ICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISGTNLAG 325
I P L +L I N + + K P++ LDI
Sbjct: 562 ITLCPSLTQLQIG--------SN-------DIRKVNEKITPNISVLDIKDNPNIS 601
Score = 28.5 bits (64), Expect = 9.5
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 38/116 (32%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273
I + +L+ + NK L ++ D
Sbjct: 366 TEIPANFCGFTEQVENLSFA------HNK-LKYIPNIFD-------------------AK 399
Query: 274 SLPLLRRLDISVSSDYPDYGN----YSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
S+ ++ +D S N D L FK ++ S+++S ++
Sbjct: 400 SVSVMSAIDFS--------YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 32.8 bits (74), Expect = 0.50
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDN----LDHICSLPLL 278
+ HL L L + L N+ L L L L + S DN +D + +LP L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQAS---DNALENVDGVANLPRL 510
Query: 279 RRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLA 324
+ L + N + + P LV L++ G +L
Sbjct: 511 QELLLC--------NNRLQQSAAIQP--LVSCPRLVLLNLQGNSLC 546
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 32.5 bits (74), Expect = 0.56
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 28/110 (25%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFLAE--FKDTLVSLVLFNVSIVKDNL-----DHICSLP 276
LT ++L NK L+ L++ TL L +VS N +
Sbjct: 727 TYLLTTIDLR------FNK-LTSLSDDFRATTLPYLSNMDVS---YNCFSSFPTQPLNSS 776
Query: 277 LLRRLDISVSSDYPDYGNYSPNPNDMLSYI---IFKLPHLVSLDISGTNL 323
L+ I N +L I P L+ L I ++
Sbjct: 777 QLKAFGIR--------HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818
Score = 31.4 bits (71), Expect = 1.6
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 26/105 (24%)
Query: 223 DMPHLTHLNLSKCMF------LFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLP 276
+P+L+++++S F ++ L I++ I + P
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF----GIRHQRDAEGNRILRQWPTGITTCP 806
Query: 277 LLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISG 320
L +L I N + + K P L LDI+
Sbjct: 807 SLIQLQIG--------SN-------DIRKVDEKLTPQLYILDIAD 836
Score = 31.4 bits (71), Expect = 1.6
Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 20/139 (14%)
Query: 200 KLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVL 259
L+ + T I + + + L + + ++ ++ D +
Sbjct: 424 SLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFA------NSP-FTYDNIAVDWEDANSD 475
Query: 260 FNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDIS 319
+ ++ +L L +++ Y+ L ++ LP L SL+I+
Sbjct: 476 YAKQY-ENEELSWSNLKDLTDVEL-----------YNCPNMTQLPDFLYDLPELQSLNIA 523
Query: 320 GTNLAGRGVAEFSSKGSPD 338
+ D
Sbjct: 524 CNRGISAAQLKADWTRLAD 542
Score = 29.8 bits (67), Expect = 4.4
Identities = 11/108 (10%), Positives = 33/108 (30%), Gaps = 14/108 (12%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDL-SFLAEFKDT-LVSLVLFNVSIVKDNLDHICSLPLLR 279
+ + + ++ S + +++ + ++K ++ L I K + + +
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700
Query: 280 RLDISVSSDYPDYGNY----SPNPNDMLSYIIFKLPHLVSLDISGTNL 323
+ +S N N L ++D+ L
Sbjct: 701 TIILS--------NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Score = 29.5 bits (66), Expect = 5.8
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 28/112 (25%)
Query: 224 MPHLTHLNLSKCMFLFDNKDLSFL-AEFKDTLVSLVLFNVSIVKDN-------LDHICSL 275
LT L L N+ + + +F + S N + + S+
Sbjct: 594 NVKLTDLKLD------YNQ-IEEIPEDFCAFTDQVEGLGFS---HNKLKYIPNIFNAKSV 643
Query: 276 PLLRRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
++ +D S N S N S +K + ++ +S +
Sbjct: 644 YVMGSVDFS--------YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Score = 28.7 bits (64), Expect = 9.1
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 30/113 (26%)
Query: 223 DMPHLTHLNLSKCMF---LFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNL-------DHI 272
D+P L LN++ D + LA+ +DT + +F + N +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG---YNNLEEFPASASL 569
Query: 273 CSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+ L LD N + ++ L L + +
Sbjct: 570 QKMVKLGLLDCV--------HN-------KVRHLEAFGTNVKLTDLKLDYNQI 607
Score = 28.7 bits (64), Expect = 9.2
Identities = 13/142 (9%), Positives = 37/142 (26%), Gaps = 39/142 (27%)
Query: 223 DMPHLTHLNLSKCMF------------------LFDNKDLSFLAEFKDTLVSLVLFNVSI 264
+ +T L+L+ + + F D ++ +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 265 VKDNLDH----ICSLPLLRRLDIS--VSSDYPDYGNYSP------------NPNDMLSYI 306
+ + + + L D+ + P+ N + +++I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 307 ---IFKLPHLVSLDISGTNLAG 325
I +L L + + +
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTY 462
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 32.4 bits (74), Expect = 0.64
Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE--FKD--TLVSLVLFNVSIVKDNL 269
I + + + L L L L+ + L+ L L +++I
Sbjct: 141 VYISHRAFSGLNSLEQLTLE------KCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 270 DHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323
L L+ L+IS D ++ +L SL I+ NL
Sbjct: 194 YSFKRLYRLKVLEIS-----------HWPYLDTMTPNCLYGLNLTSLSITHCNL 236
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 32.0 bits (73), Expect = 0.77
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEF----KDTLVSLVLFNVSIVKDNL 269
+ L +T L+LS + K + LA + +VSL L + +L
Sbjct: 185 AELAKFLASIPASVTSLDLSANL--LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 270 DHICSL----PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
+++ L L+ + + Y N S L + ++ +D +G +
Sbjct: 243 ENLKLLKDSLKHLQTVYLD----YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298
Query: 326 RGVAEFS 332
S
Sbjct: 299 SHSIPIS 305
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 31.2 bits (71), Expect = 0.77
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 34/104 (32%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHIC 273
I L + +P LT L L+ L + DL LA K L L + N
Sbjct: 77 CRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKS-LTYLCILR------N----- 123
Query: 274 SLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
P+ ++ Y Y+I+K+P + LD
Sbjct: 124 --PV---------TNKKHY----------RLYVIYKVPQVRVLD 146
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 31.9 bits (73), Expect = 1.0
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 211 LMSQSICTQLYRDMPHLTHLNLSKCMFL-FDNKDLSFLAEFKDTLVSLVLFNVSIVKDNL 269
+ + C R++ HL LNLS L + + L L L + +
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ----LELLDLAFTRLKVKDA 417
Query: 270 DHI-CSLPLLRRLDISVSSDYPDYGNY-SPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
+L LL+ L++S + + + LP L L++ G +
Sbjct: 418 QSPFQNLHLLKVLNLS--------HSLLDISSEQLFD----GLPALQHLNLQGNHFPK 463
Score = 31.1 bits (71), Expect = 1.4
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 21/117 (17%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVS-----IVKDN 268
+++C + P LTHL++ + + L +L ++S
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCL-----ENLENLRELDLSHDDIETSDCC 368
Query: 269 LDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAG 325
+ +L L+ L++S N P + + + P L LD++ T L
Sbjct: 369 NLQLRNLSHLQSLNLS--------YN---EPLSLKTEAFKECPQLELLDLAFTRLKV 414
Score = 29.6 bits (67), Expect = 5.2
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 19/134 (14%)
Query: 195 ILKAPKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTL 254
+ + + G + + L D F + ++
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISPAVFEGLCEMSV 256
Query: 255 VSLVLFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI---IFKLP 311
S+ L + + L+ LD++ + LS + + L
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLT--------ATH-------LSELPSGLVGLS 301
Query: 312 HLVSLDISGTNLAG 325
L L +S
Sbjct: 302 TLKKLVLSANKFEN 315
Score = 29.2 bits (66), Expect = 6.2
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 222 RDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRL 281
++ P L L+L+ L S L L L + + + LP L+ L
Sbjct: 397 KECPQLELLDLAFT-RLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 282 DISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323
++ GN+ P N + + L L L +S +L
Sbjct: 455 NLQ--------GNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 31.2 bits (71), Expect = 1.4
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 22/130 (16%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKD--TLVS 256
P L L + L + C+Q L +L+LS N ++ + F L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLEH 400
Query: 257 LVLFNVSIVK-DNLDHICSLPLLRRLDISVSSDYPDYGNY-SPNPNDMLSYIIFKLPHLV 314
L + ++ + SL L LDIS + N + + L L
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDIS--------HTHTRVAFNGIFN----GLSSLE 448
Query: 315 SLDISGTNLA 324
L ++G +
Sbjct: 449 VLKMAGNSFQ 458
Score = 31.2 bits (71), Expect = 1.5
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 25/116 (21%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE--FKDT--LVSLVLFNVSIVKDNL 269
Q+I Y+ + HL+ L L+ N + LA F L LV ++
Sbjct: 65 QTIEDGAYQSLSHLSTLILT------GNP-IQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 270 DHICSLPLLRRLDISVSSDYPDYGNY--SPNPNDMLSYIIFKLPHLVSLDISGTNL 323
I L L+ L+++ N S + S L +L LD+S +
Sbjct: 118 FPIGHLKTLKELNVA--------HNLIQSFKLPEYFS----NLTNLEHLDLSSNKI 161
Score = 28.5 bits (64), Expect = 9.8
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 28/109 (25%)
Query: 223 DMPHLTHLNLSKCMFLFDNK--DLSFLAEFKDTLVSLVLFNVSIVKDNL-----DHICSL 275
D+P L L+LS N ++ SL ++S N + L
Sbjct: 345 DLPSLEFLDLS------RNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGL 395
Query: 276 PLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFK-LPHLVSLDISGTNL 323
L LD + N M + +F L +L+ LDIS T+
Sbjct: 396 EQLEHLDFQ--------HS---NLKQMSEFSVFLSLRNLIYLDISHTHT 433
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics,
center for STR genomics of infectious diseases, csgid;
2.61A {Vibrio cholerae o1 biovar el tor}
Length = 212
Score = 30.7 bits (69), Expect = 1.5
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 568 RLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLN 615
+ IK R +LE+AW WN + + L + +E
Sbjct: 160 KHIKFRFSDVEIAMLLEMAW---WNWPESWLKESMQSLCSSDIEGLYL 204
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 24/103 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
++ +T L ++ + + + L L L I ++ + +L L L
Sbjct: 42 ELESITKLVVAGEKV----ASIQGIEYLTN-LEYLNLNGNQI--TDISPLSNLVKLTNLY 94
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
I + ++ I + L +L L ++ N+
Sbjct: 95 IG---------------TNKITDISALQNLTNLRELYLNEDNI 122
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 30.9 bits (69), Expect = 1.8
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 699 LAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQ 758
+ I + E + R+F +++LL+ E Q AN+ P +
Sbjct: 633 MMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAKE 691
Query: 759 VVEAEGGIELLQNLLDNENK 778
++ + IE + ++
Sbjct: 692 LLTKKELIENAIQVFADQID 711
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix;
3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB:
2xat_A*
Length = 212
Score = 30.3 bits (68), Expect = 1.8
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 568 RLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLN 615
R I+ R ++LE+AW W+ L G +
Sbjct: 159 RTIRKRFSDGDIQNLLEMAW---WDWPLADIEAAMPLLCTGDIPALYQ 203
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 30.8 bits (69), Expect = 1.8
Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 24/103 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
++ + + + K + + + + L L + ++ + +L L L
Sbjct: 41 ELNSIDQIIANNSDI----KSVQGIQYLPN-VTKLFLNGNKL--TDIKPLTNLKNLGWLF 93
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+ + + + + L L SL + +
Sbjct: 94 LD---------------ENKIKDLSSLKDLKKLKSLSLEHNGI 121
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 30.6 bits (70), Expect = 1.9
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 254 LVSLVLFNVSIVKDNL--DHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI---IF 308
+ +L L +++ K + +LP L L I N+++ I I
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-------------GINNLVGPIPPAIA 98
Query: 309 KLPHLVSLDISGTNLAG 325
KL L L I+ TN++G
Sbjct: 99 KLTQLHYLYITHTNVSG 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 30.7 bits (70), Expect = 2.0
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 24/103 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
D+ +T L + K + + L + N + ++ + +L L +
Sbjct: 44 DLDQVTTLQADRLGI----KSIDGVEYLN-NLTQINFSNNQL--TDITPLKNLTKLVDIL 96
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
++ N ++ I + L +L L + +
Sbjct: 97 MN--------NNQ-------IADITPLANLTNLTGLTLFNNQI 124
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic
resistance, center for struc genomics of infectious
diseases (csgid); 2.70A {Staphylococcus aureus}
Length = 219
Score = 30.3 bits (68), Expect = 2.1
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 568 RLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLN 615
+ I+ R ++ L + W WN+ + F+ NG +E+
Sbjct: 167 KFIRKRFSDGVIEEWLALQW---WNLDMKIINENLPFIINGDIEMLKR 211
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 30.3 bits (69), Expect = 2.9
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 30/104 (28%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLP-LLRRL 281
PHL L S N L+ L E +L SL++ N ++ + LP LL L
Sbjct: 89 LPPHLESLVAS------CNS-LTELPELPQSLKSLLVDNNNLKA-----LSDLPPLLEYL 136
Query: 282 DISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+S N+ L + + L +D+ +L
Sbjct: 137 GVS---------------NNQLEKLPELQNSSFLKIIDVDNNSL 165
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 30.2 bits (68), Expect = 3.3
Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 28/131 (21%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
+L L + L S ++ M L L++S+ +D K SL+
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-----SWTKSLL 402
Query: 259 LFNVS------IVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPH 312
N+S + L P ++ LD+ N + + KL
Sbjct: 403 SLNMSSNILTDTIFRCL-----PPRIKVLDLHS------------NKIKSIPKQVVKLEA 445
Query: 313 LVSLDISGTNL 323
L L+++ L
Sbjct: 446 LQELNVASNQL 456
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 29.7 bits (67), Expect = 4.0
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 24/102 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
+ LT L+ D++ + + L L+ + +I LD + L L
Sbjct: 40 QLATLTSLDCHNSSI----TDMTGIEKLTG-LTKLICTSNNI--TTLD-LSQNTNLTYLA 91
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYIIF-KLPHLVSLDISGTNL 323
++ L+ + L L L+ L
Sbjct: 92 CD---------------SNKLTNLDVTPLTKLTYLNCDTNKL 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 29.3 bits (66), Expect = 5.0
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
++ +L L L + KDLS L + K L SL L + I +++ + LP L L
Sbjct: 88 NLKNLGWLFLDENKV----KDLSSLKDLK-KLKSLSLEHNGI--SDINGLVHLPQLESLY 140
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+ N+ ++ I + +L L +L + +
Sbjct: 141 LG---------------NNKITDITVLSRLTKLDTLSLEDNQI 168
Score = 28.9 bits (65), Expect = 6.5
Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 24/103 (23%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
++ + + + K + + + + L L + ++ + +L L L
Sbjct: 44 ELNSIDQIIANNSDI----KSVQGIQYLPN-VTKLFLNGNKLT--DIKPLANLKNLGWLF 96
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
+ + + + + L L SL + +
Sbjct: 97 LD---------------ENKVKDLSSLKDLKKLKSLSLEHNGI 124
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 29.3 bits (66), Expect = 5.1
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 20/101 (19%)
Query: 223 DMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
D+ +T L+ + + L+ L L + I +L + +L + L+
Sbjct: 39 DLDGITTLSAFGTGV----TTIEGVQYLN-NLIGLELKDNQI--TDLAPLKNLTKITELE 91
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNL 323
+S NP +S I L + +LD++ T +
Sbjct: 92 LSG------------NPLKNVS-AIAGLQSIKTLDLTSTQI 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 28.8 bits (65), Expect = 5.4
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 222 RDMPHLTHLNLSKCMFLFDNK--DLSFLAEFKDTLVSLVLFNVSIVKDNLDHICSLPLLR 279
+++ + LS+ +FL +N+ D L K L L + N + ++ + L L
Sbjct: 98 KNLNGIPSACLSR-LFLDNNELRDTDSLIHLK-NLEILSIRNNKL--KSIVMLGFLSKLE 153
Query: 280 RLDISVSSDYPDYGNYSPNPNDMLSYI--IFKLPHLVSLDISGTNL 323
LD+ + ++ + +L + +D++G
Sbjct: 154 VLDLH---------------GNEITNTGGLTRLKKVNWIDLTGQKC 184
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.6 bits (64), Expect = 8.5
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 31/118 (26%)
Query: 214 QSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAE--FKD--TLVSLVLFNVSIVKDNL 269
+SI + + +P L L+L + K LS+++E F+ L L L ++ +
Sbjct: 149 ESIPSYAFNRIPSLRRLDLG------ELKRLSYISEGAFEGLSNLRYLNLAMCNL--REI 200
Query: 270 DHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYI---IFK-LPHLVSLDISGTNL 323
++ L L LD+S GN LS I F+ L HL L + + +
Sbjct: 201 PNLTPLIKLDELDLS--------GN-------HLSAIRPGSFQGLMHLQKLWMIQSQI 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,861,184
Number of extensions: 726981
Number of successful extensions: 2180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1751
Number of HSP's successfully gapped: 265
Length of query: 778
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 677
Effective length of database: 3,881,772
Effective search space: 2627959644
Effective search space used: 2627959644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)