RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17257
(778 letters)
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 53.4 bits (126), Expect = 7e-08
Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 10/244 (4%)
Query: 535 LRIAIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVT 594
+ + S + +K+++ ++G I+ ++R + +++ + A + +
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 595 DETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIE 654
E + + G+ + + L P L++ +GL+ N+A + L I
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400
Query: 655 VFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSE 714
L+ + + G +G I + + R I
Sbjct: 401 RLVQLLVRAHQDTQRRTSMGGTQQQFV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGL 459
Query: 715 RNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLD 774
I +QLL Q + L L + ++ + +EAEG L LL
Sbjct: 460 NTI-----PLFVQLLY-SPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLH 511
Query: 775 NENK 778
+ N+
Sbjct: 512 SRNE 515
Score = 32.9 bits (73), Expect = 0.17
Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 29/130 (22%)
Query: 648 MTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIE 707
+ ++ I L++ + V AA ++ ++ + A + + + +
Sbjct: 14 LATRAIPELTKLLNDEDQ--VVVNKAAVMVHQLS---------KKEASRHAIMRSPQMVS 62
Query: 708 RWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIE 767
I++ ++ + E + L NL+ + + GGI
Sbjct: 63 ----------------AIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIP 104
Query: 768 LLQNLLDNEN 777
L +L +
Sbjct: 105 ALVKMLGSPV 114
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 40.6 bits (93), Expect = 6e-04
Identities = 31/349 (8%), Positives = 96/349 (27%), Gaps = 20/349 (5%)
Query: 442 IQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIP 501
Q+ + ++ + +P + ++ + +I ++ + + + L
Sbjct: 29 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASG 87
Query: 502 QDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKILLGRLG 561
Q + I+ + + A++ L ++A +++
Sbjct: 88 TSEQTKAVVDGGAIPAFISLLASPHAH-----ISEQAVWALGNIAGDGSAFRDLVIKHGA 142
Query: 562 VIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFP 621
+ + L + C + + W + N+ + + L +
Sbjct: 143 IDPLLALLAVPDLSTLACGYLRNLTW-TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201
Query: 622 EKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIA 681
+ + + + ++ L +++ + + A G +
Sbjct: 202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261
Query: 682 S----------DGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLL-- 729
++ + + + + + I ++ L
Sbjct: 262 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 321
Query: 730 -RVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNEN 777
+ Q + WA+ N T + + G IE L NLL ++
Sbjct: 322 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 370
Score = 36.7 bits (83), Expect = 0.009
Identities = 46/378 (12%), Positives = 109/378 (28%), Gaps = 32/378 (8%)
Query: 422 IEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMH 481
I L+ + IQ + L I + + I I H
Sbjct: 53 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 112
Query: 482 LEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYL 541
+ + LL ++ + + + G +
Sbjct: 113 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG----YLRNLTW 168
Query: 542 LNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDETAINC 601
S C+ N L ++ ++RL+ + D A+ +TD
Sbjct: 169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS-----CWAISYLTDGPNERI 223
Query: 602 ARFLNNGGMELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLVS 661
+ G + + L + + + V K++ + + VF +L++
Sbjct: 224 EMVVKKGVVPQLVKLLGATELPI-VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 282
Query: 662 SKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERNI---- 717
+ I+ + + ++ + +A + ++ I
Sbjct: 283 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 342
Query: 718 ------------NYRSFEPIIQLLRVYHTPECQHWSVWALANLTKV-----YPEKYCQVV 760
+ EP++ LL + + A++N+ + EK ++
Sbjct: 343 SGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMI 401
Query: 761 EAEGGIELLQNLLDNENK 778
E GG++ ++ L +EN+
Sbjct: 402 EECGGLDKIEALQRHENE 419
Score = 29.8 bits (65), Expect = 1.6
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 710 PIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELL 769
I S + S E I++ + + E Q + A L + + G I
Sbjct: 3 DIGSNQGTVNWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 770 QNLLDNEN 777
+ L +
Sbjct: 62 VSFLGKTD 69
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 40.5 bits (93), Expect = 7e-04
Identities = 42/387 (10%), Positives = 114/387 (29%), Gaps = 36/387 (9%)
Query: 406 VLNDLYHIFRYDTCVDIEHALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSL 465
V+ L R + ++ L + + + + + + + +++ S
Sbjct: 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG--SVE 177
Query: 466 TKRHIITTILNGMHMHLEDDTMMRNGCLTLCQFKIPQDVQFDYDRLVRILLHIITEMEHE 525
K I + N + + + + L+R ++ +
Sbjct: 178 VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK---PSLIRTATWTLSNLCRG 234
Query: 526 SNSNGSNFVLRIAIYLL-------------NSLACQVDNAHKILLGRLGVIKKMLRLIKD 572
V+ A+ L ++ + VI +
Sbjct: 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 294
Query: 573 RIEKQRCDDILEVAWSAMWNVTDETAINCARFLNNGGMELFLNCLQYFPEKDELLRNMMG 632
+ + A A+ N+ + +N G + L K+ + +
Sbjct: 295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACW 352
Query: 633 LLGNVAEVKSLRPKLMTSKFIEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPE-AWTIR 691
+ N+ + + + + + + ++ + A +S+ +S G + IR
Sbjct: 353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDIIR 411
Query: 692 YPAREKVLAKMVEAIERWPIDSERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKV 751
Y + + + + +E ++ I + + + +L++ A +
Sbjct: 412 YLVSQGCIKPLCDLLE----IADNRIIEVTLDALENILKM----------GEADKEARGL 457
Query: 752 YPEKYCQVVEAEGGIELLQNLLDNENK 778
+ +E GG+E + N NEN
Sbjct: 458 NINENADFIEKAGGMEKIFNCQQNEND 484
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 36.7 bits (84), Expect = 0.003
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 215 SICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLVLFNVSIVKDNLDHICS 274
+ + ++P L LNLS L+ D+S + + L L L + +
Sbjct: 55 ATLRIIEENIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 113
Query: 275 LPLLRRLDIS---VSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLD 317
L L + +S + D Y +S I + P L+ LD
Sbjct: 114 GLKLEELWLDGNSLSDTFRDQSTY-------ISAIRERFPKLLRLD 152
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 38.3 bits (87), Expect = 0.004
Identities = 45/372 (12%), Positives = 98/372 (26%), Gaps = 42/372 (11%)
Query: 440 RHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTIL---NGMHMHLEDDTMMRNGCLTLC 496
R++ + N + SL +R I G+ +L ++ +
Sbjct: 69 RNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADA 128
Query: 497 QFKIPQDVQFDYDRLVRILLHIITEMEHESNSNGSNFVLRIAIYLLNSLACQVDNAHKIL 556
+ V + ++ E+ V A L +L+ +
Sbjct: 129 LPVLADRVIIPFSGWCDGNSNMSREVVDPE-------VFFNATGCLRNLSSADAGRQTMR 181
Query: 557 LGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTD-------ETAINCARFLNNGG 609
+ M + + D +E + N++ N
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 610 MELFLNCLQYFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEVFANLV--SSKSDGI 667
E + N L L S I + NL+ S K +
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301
Query: 668 EVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSERN----------- 716
E A L+ + +EK L ++ ++ D R+
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361
Query: 717 ------INYRSFEPIIQLLR-----VYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGG 765
+ + F + +LL ++ + + + + NL P+ + +
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSM 420
Query: 766 IELLQNLLDNEN 777
+ + NL +
Sbjct: 421 LNNIINLCRSSA 432
Score = 37.5 bits (85), Expect = 0.006
Identities = 25/333 (7%), Positives = 84/333 (25%), Gaps = 34/333 (10%)
Query: 424 HALVVVLEALDTHLTERHIQISGSANLFYIVKMKDRPVLSSLTKRHIITTILNGMHMHLE 483
+ + + + + + L + + +I +++ + +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ-TMRNYSGLIDSLMAYVQNCVA 199
Query: 484 DDTMMRNGCLTLCQFKIPQDVQFD------YDRLVRILLHIITEMEHESNSNGSNFVLRI 537
+ D Y +L + TE + + +
Sbjct: 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN 259
Query: 538 AIYLLNSLACQVDNAHKILLGRLGVIKKMLRLIKDRIEKQRCDDILEVAWSAMWNVTDET 597
Y + + L I+ L L+ + + + + +
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319
Query: 598 AINCARFL-NNGGMELFLNCLQ-YFPEKDELLRNMMGLLGNVAEVKSLRPKLMTSKFIEV 655
+ G+ LQ + +++ + + + + + +
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRL 379
Query: 656 FANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPIDSER 715
+ + S+ ++ +A + ++ + P+ S
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQL--------------------AKQYFSSS 419
Query: 716 NINYRSFEPIIQLLRVYHTPECQHWSVWALANL 748
+ II L R +P+ + L+++
Sbjct: 420 ML-----NNIINLCRSSASPKAAEAARLLLSDM 447
Score = 32.5 bits (72), Expect = 0.18
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 723 EPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNLLDNENK 778
+Q L + Q + + + QV + GGI L +LL + N+
Sbjct: 5 PKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQ 58
Score = 29.4 bits (64), Expect = 1.9
Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 29/125 (23%)
Query: 653 IEVFANLVSSKSDGIEVSYNAAGVLSHIASDGPEAWTIRYPAREKVLAKMVEAIERWPID 712
I +SS+ + + A + H A +++V
Sbjct: 4 IPKAVQYLSSQDE--KYQAIGAYYIQHTCFQDESA-------KQQV-------------- 40
Query: 713 SERNINYRSFEPIIQLLRVYHTPECQHWSVWALANLTKVYPEKYCQVVEAEGGIELLQNL 772
++ LLR Q + AL NL + GI +L
Sbjct: 41 ----YQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSL 94
Query: 773 LDNEN 777
L
Sbjct: 95 LRRTG 99
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 30.0 bits (67), Expect = 1.3
Identities = 18/151 (11%), Positives = 42/151 (27%), Gaps = 5/151 (3%)
Query: 228 THLNLSKCMFLFDNKDLSFL-----AEFKDTLVSLVLFNVSIVKDNLDHICSLPLLRRLD 282
+ + + ++ L FL + F ++ + S + + + +
Sbjct: 229 SKFFMGTVVKKYEENPLHFLMGVWGSAFSILFNRVLGVSGSQSRGSTMEEELENITTKHI 288
Query: 283 ISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDISGTNLAGRGVAEFSSKGSPDVPYV 342
+S S D ++ P + + I +A + + V
Sbjct: 289 VSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHRMIMALVSDSALFNTREGRAGKV 348
Query: 343 TTDIPGLASRVDRPLEFLGLYGTKHGASHRH 373
+ GL PL L + T+
Sbjct: 349 HNFMLGLNLNTSYPLSPLSDFATQDSFDDDE 379
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 28.8 bits (63), Expect = 2.4
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 24/127 (18%)
Query: 199 PKLRRFSLIGHTLMSQSICTQLYRDMPHLTHLNLSKCMFLFDNKDLSFLAEFKDTLVSLV 258
KL L + + + S L + N + + L L
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---------NLKNLTYLT 313
Query: 259 LFNVSIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDMLSYIIFKLPHLVSLDI 318
L+ +I ++ + SL L+RL + N + + + L ++ L
Sbjct: 314 LYFNNI--SDISPVSSLTKLQRLFFA--------NNKVSDVSS-----LANLTNINWLSA 358
Query: 319 SGTNLAG 325
++
Sbjct: 359 GHNQISD 365
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 25.7 bits (56), Expect = 8.6
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 263 SIVKDNLDHICSLPLLRRLDISVSSDYPDYGNYSPNPNDM 302
+++ H + P + + S+ PDY P D+
Sbjct: 9 NLLAQIKSHPSAWPFMEPVK---KSEAPDYYEVIRFPIDL 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.408
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,881,066
Number of extensions: 137579
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 35
Length of query: 778
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 686
Effective length of database: 1,144,436
Effective search space: 785083096
Effective search space used: 785083096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)