BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1726
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1
SV=1
Length = 548
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
AF YYG+VL+TTELF+A D + + S K V+ C+ C L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380
Query: 116 LAEFPG 121
L+EFPG
Sbjct: 381 LSEFPG 386
>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1
Length = 548
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
AF YYG+VL+TTELF+A D + + S K V+ C+ C L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380
Query: 116 LAEFPG 121
L+EFPG
Sbjct: 381 LSEFPG 386
>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop
PE=1 SV=1
Length = 548
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 8/66 (12%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
AF YYG+VL+TTELF+A D + + S K V+ C+ C L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTT 380
Query: 116 LAEFPG 121
L+EFPG
Sbjct: 381 LSEFPG 386
>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2
SV=1
Length = 548
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
AF YYG+VL+TTELF+A D + S K V+ C+ C L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380
Query: 116 LAEFPG 121
L+EFPG
Sbjct: 381 LSEFPG 386
>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2
SV=1
Length = 548
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 8/66 (12%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDT-CTADCRQLNTQDYMDLLWTT 115
AF YYG+VL+TTELF+A D + S K V+ C+ C L+ +DYMDLLWTT
Sbjct: 328 AFSYYGLVLLTTELFQAGD-------VCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTT 380
Query: 116 LAEFPG 121
L+EFPG
Sbjct: 381 LSEFPG 386
>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2
SV=1
Length = 548
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
AF YYG+VL+TTELF+A D CS I+ KP C+ C L +DY DLLWTTL
Sbjct: 328 AFSYYGLVLLTTELFQAGDV-CS---ISNQRKAVKP--KCSLACEYLTVEDYTDLLWTTL 381
Query: 117 AEFPG 121
+EFPG
Sbjct: 382 SEFPG 386
>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1
PE=3 SV=5
Length = 520
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 55 VCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWT 114
+ AF YYG+VL TT LF++ D C G+F T C+ L DY DLL T
Sbjct: 328 ITAFSYYGMVLFTTVLFQSHD-ECH-------GGLFSN-GTQMEVCQPLTRSDYFDLLST 378
Query: 115 TLAEFPG 121
TLAEFPG
Sbjct: 379 TLAEFPG 385
>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana
GN=OCT7 PE=2 SV=1
Length = 500
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 57 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTL 116
AF YYGVVL+TTEL S RC + R N +Y D+ +
Sbjct: 305 AFAYYGVVLLTTEL-NNSHNRCYPT---------------EKQLRNSNDVNYRDVFIASF 348
Query: 117 AEFPG 121
AEFPG
Sbjct: 349 AEFPG 353
>sp|Q65670|P31_BNYVS 31 kDa protein OS=Beet necrotic yellow vein virus (isolate Japan/S)
GN=p31 PE=4 SV=1
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 32 GLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFK 91
G+F +Q P FL A CY GV +++ EL EA+ T S S +A +G ++
Sbjct: 98 GIFHGWQVVP-----GCFLN-----APCYSGVDVLSDELCEANITNTSVSSVAMFNGSYR 147
Query: 92 PVDT 95
P D
Sbjct: 148 PEDV 151
>sp|Q82NI1|CRCB2_STRAW Protein CrcB homolog 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=crcB2 PE=3 SV=1
Length = 158
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 14 VTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFH 52
V AH ++R TGV G FTTF +Y I K V H
Sbjct: 86 VWPAHRLVRPF-FGTGVLGGFTTFSTYAVDIQKLVDAGH 123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,643,351
Number of Sequences: 539616
Number of extensions: 1465597
Number of successful extensions: 3621
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3604
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)