Query psy1726
Match_columns 137
No_of_seqs 120 out of 876
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0253|consensus 99.7 2.2E-16 4.7E-21 134.4 8.4 102 21-136 310-413 (528)
2 TIGR01299 synapt_SV2 synaptic 99.1 1.4E-10 3E-15 105.4 8.3 43 26-73 431-474 (742)
3 TIGR00898 2A0119 cation transp 98.2 3E-06 6.4E-11 71.7 6.9 70 29-135 315-386 (505)
4 TIGR00887 2A0109 phosphate:H+ 98.0 1.8E-05 3.9E-10 67.7 7.1 93 29-136 273-367 (502)
5 KOG0255|consensus 97.7 0.00016 3.4E-09 62.0 7.5 71 29-136 310-382 (521)
6 PRK10642 proline/glycine betai 97.3 0.0013 2.8E-08 56.2 8.1 75 29-135 240-317 (490)
7 PRK10406 alpha-ketoglutarate t 96.5 0.017 3.7E-07 48.3 8.7 74 29-135 234-310 (432)
8 KOG0569|consensus 96.5 0.0089 1.9E-07 52.6 6.8 78 29-136 257-337 (485)
9 PRK11551 putative 3-hydroxyphe 96.4 0.016 3.6E-07 47.3 7.8 70 40-135 215-286 (406)
10 KOG0254|consensus 96.4 0.0045 9.8E-08 53.4 4.6 75 30-136 284-361 (513)
11 PRK12307 putative sialic acid 96.3 0.02 4.4E-07 47.1 7.7 76 29-135 220-297 (426)
12 TIGR00895 2A0115 benzoate tran 96.2 0.033 7.1E-07 44.4 8.4 69 40-134 245-315 (398)
13 PRK15075 citrate-proton sympor 96.1 0.033 7.3E-07 46.6 8.4 64 46-135 239-305 (434)
14 TIGR00901 2A0125 AmpG-related 95.9 0.019 4E-07 46.2 5.7 63 46-135 210-276 (356)
15 PLN00028 nitrate transmembrane 95.8 0.059 1.3E-06 46.1 8.3 69 40-135 31-102 (476)
16 PF00083 Sugar_tr: Sugar (and 95.5 0.00039 8.4E-09 57.8 -5.7 76 29-136 240-318 (451)
17 TIGR00879 SP MFS transporter, 95.4 0.068 1.5E-06 43.4 7.1 66 44-135 283-350 (481)
18 TIGR00903 2A0129 major facilit 95.4 0.078 1.7E-06 44.1 7.5 68 29-134 184-253 (368)
19 PRK09952 shikimate transporter 95.3 0.1 2.2E-06 43.9 8.2 65 45-135 250-317 (438)
20 PRK10504 putative transporter; 95.3 0.09 2E-06 44.1 7.9 67 42-135 7-76 (471)
21 PRK03893 putative sialic acid 95.3 0.11 2.4E-06 43.6 8.3 69 40-135 15-86 (496)
22 PRK03699 putative transporter; 95.2 0.091 2E-06 43.2 7.5 68 43-136 203-273 (394)
23 PRK09705 cynX putative cyanate 95.2 0.088 1.9E-06 43.6 7.4 62 48-135 208-271 (393)
24 PRK09556 uhpT sugar phosphate 95.2 0.14 3E-06 43.3 8.6 61 49-135 262-325 (467)
25 KOG0252|consensus 95.1 0.0068 1.5E-07 53.6 0.4 85 30-136 294-380 (538)
26 TIGR00897 2A0118 polyol permea 95.1 0.14 3E-06 42.3 8.1 59 52-136 230-289 (402)
27 PRK15462 dipeptide/tripeptide 95.0 0.084 1.8E-06 46.4 7.0 69 42-136 6-78 (493)
28 PRK11663 regulatory protein Uh 95.0 0.14 3.1E-06 42.9 8.1 70 40-136 17-90 (434)
29 TIGR02332 HpaX 4-hydroxyphenyl 94.8 0.14 3E-06 42.8 7.4 63 49-135 246-310 (412)
30 PRK12307 putative sialic acid 94.5 0.29 6.3E-06 40.2 8.6 70 40-135 12-84 (426)
31 TIGR00893 2A0114 d-galactonate 94.4 0.26 5.7E-06 38.7 7.9 63 47-135 217-282 (399)
32 TIGR00883 2A0106 metabolite-pr 94.4 0.27 5.8E-06 39.0 7.9 65 46-135 220-286 (394)
33 PRK11273 glpT sn-glycerol-3-ph 94.4 0.23 4.9E-06 41.9 7.9 26 111-136 69-95 (452)
34 TIGR00895 2A0115 benzoate tran 94.3 0.26 5.7E-06 39.2 7.7 61 48-135 20-83 (398)
35 PRK03699 putative transporter; 94.2 0.21 4.6E-06 41.1 7.2 69 40-135 2-73 (394)
36 PRK11652 emrD multidrug resist 93.9 0.29 6.2E-06 40.0 7.3 26 111-136 49-75 (394)
37 PRK11551 putative 3-hydroxyphe 93.8 0.45 9.8E-06 38.8 8.4 58 52-136 23-82 (406)
38 TIGR00891 2A0112 putative sial 93.8 0.36 7.9E-06 38.6 7.7 65 45-135 12-78 (405)
39 PRK10077 xylE D-xylose transpo 93.7 0.41 8.9E-06 39.9 8.2 55 55-135 282-337 (479)
40 cd06174 MFS The Major Facilita 93.7 0.44 9.5E-06 36.9 7.7 65 45-135 175-242 (352)
41 PLN00028 nitrate transmembrane 93.6 0.27 5.8E-06 42.0 6.9 63 46-134 253-318 (476)
42 PRK11273 glpT sn-glycerol-3-ph 93.5 0.49 1.1E-05 39.8 8.4 56 52-133 261-318 (452)
43 PRK10054 putative transporter; 93.5 0.28 6.1E-06 40.7 6.8 68 43-136 5-75 (395)
44 TIGR00891 2A0112 putative sial 93.5 0.45 9.8E-06 38.1 7.7 59 52-136 246-306 (405)
45 TIGR00924 yjdL_sub1_fam amino 93.1 0.3 6.4E-06 42.0 6.4 67 45-135 10-80 (475)
46 TIGR00896 CynX cyanate transpo 92.8 0.78 1.7E-05 36.8 8.2 57 52-134 205-262 (355)
47 TIGR00897 2A0118 polyol permea 92.7 0.35 7.5E-06 40.0 6.1 67 43-135 11-79 (402)
48 PRK03633 putative MFS family t 92.7 0.46 1E-05 38.8 6.8 67 42-135 3-72 (381)
49 cd06174 MFS The Major Facilita 92.3 0.76 1.7E-05 35.6 7.3 59 52-136 7-66 (352)
50 PRK15034 nitrate/nitrite trans 92.2 0.43 9.4E-06 41.7 6.4 63 46-135 253-317 (462)
51 PRK09528 lacY galactoside perm 92.1 0.63 1.4E-05 38.5 7.0 65 46-136 11-78 (420)
52 TIGR00894 2A0114euk Na(+)-depe 91.6 1.2 2.5E-05 37.4 8.1 63 47-134 263-327 (465)
53 TIGR00712 glpT glycerol-3-phos 91.5 1.2 2.6E-05 37.3 8.1 57 53-134 260-317 (438)
54 TIGR00711 efflux_EmrB drug res 91.3 0.69 1.5E-05 38.5 6.4 59 52-135 263-322 (485)
55 TIGR00886 2A0108 nitrite extru 91.3 0.74 1.6E-05 36.7 6.3 58 52-135 233-292 (366)
56 TIGR00890 2A0111 Oxalate/Forma 90.9 1.2 2.7E-05 34.9 7.2 28 109-136 244-272 (377)
57 COG2271 UhpC Sugar phosphate p 90.6 1.2 2.6E-05 39.1 7.3 60 50-134 254-320 (448)
58 TIGR00886 2A0108 nitrite extru 90.5 0.99 2.1E-05 35.9 6.4 25 111-135 43-68 (366)
59 PRK09874 drug efflux system pr 90.4 1.7 3.6E-05 35.2 7.7 69 43-135 12-85 (408)
60 PRK15403 multidrug efflux syst 90.2 0.79 1.7E-05 38.3 5.8 67 52-136 15-83 (413)
61 PRK11663 regulatory protein Uh 90.1 1.9 4E-05 36.1 8.0 55 52-132 251-307 (434)
62 PRK15075 citrate-proton sympor 90.0 1.4 3.1E-05 36.7 7.2 67 46-136 16-88 (434)
63 TIGR00711 efflux_EmrB drug res 89.9 1.3 2.9E-05 36.8 6.9 63 47-135 4-68 (485)
64 TIGR00882 2A0105 oligosacchari 89.9 1.7 3.6E-05 35.6 7.3 28 108-135 41-69 (396)
65 TIGR00710 efflux_Bcr_CflA drug 89.7 1.2 2.7E-05 35.4 6.4 26 110-135 45-71 (385)
66 TIGR00881 2A0104 phosphoglycer 89.5 0.83 1.8E-05 35.9 5.2 26 111-136 36-62 (379)
67 PF13347 MFS_2: MFS/sugar tran 89.5 2.4 5.2E-05 35.3 8.1 25 112-136 267-292 (428)
68 PRK05122 major facilitator sup 89.5 1.7 3.6E-05 35.5 7.0 24 113-136 59-83 (399)
69 PRK03545 putative arabinose tr 89.0 3 6.4E-05 34.1 8.3 25 111-135 247-272 (390)
70 TIGR01299 synapt_SV2 synaptic 88.9 3.4 7.4E-05 38.3 9.3 26 111-136 208-234 (742)
71 PRK03893 putative sialic acid 88.8 1.5 3.3E-05 36.8 6.5 26 110-135 316-342 (496)
72 TIGR00712 glpT glycerol-3-phos 88.8 1.6 3.4E-05 36.6 6.6 26 111-136 67-93 (438)
73 PRK10133 L-fucose transporter; 88.6 2.6 5.6E-05 35.8 7.8 68 43-136 24-93 (438)
74 PRK03633 putative MFS family t 88.4 2.5 5.4E-05 34.4 7.4 25 111-135 241-266 (381)
75 PRK15402 multidrug efflux syst 88.4 2.4 5.2E-05 34.7 7.3 25 111-135 54-79 (406)
76 PRK11010 ampG muropeptide tran 87.9 2.1 4.6E-05 36.9 7.0 24 112-135 266-290 (491)
77 COG2807 CynX Cyanate permease 87.5 2.2 4.7E-05 36.9 6.6 49 56-130 220-269 (395)
78 TIGR00890 2A0111 Oxalate/Forma 87.0 2.3 5.1E-05 33.3 6.2 28 109-136 42-70 (377)
79 PRK10213 nepI ribonucleoside t 86.3 3.5 7.5E-05 34.2 7.2 23 113-135 63-86 (394)
80 PRK09584 tppB putative tripept 86.0 2.5 5.4E-05 36.6 6.4 29 45-73 21-50 (500)
81 PRK10207 dipeptide/tripeptide 85.8 2.5 5.4E-05 36.7 6.3 30 44-73 13-43 (489)
82 PRK15011 sugar efflux transpor 85.2 3.8 8.1E-05 33.7 6.9 23 113-135 260-283 (393)
83 PF07690 MFS_1: Major Facilita 85.1 3 6.6E-05 32.5 6.0 25 111-135 38-63 (352)
84 PF11700 ATG22: Vacuole efflux 85.1 4 8.7E-05 35.7 7.3 81 29-134 266-347 (477)
85 PF07690 MFS_1: Major Facilita 85.0 1.8 4E-05 33.8 4.7 58 52-135 214-274 (352)
86 TIGR00882 2A0105 oligosacchari 84.9 6.6 0.00014 32.1 8.1 26 111-136 260-286 (396)
87 TIGR02332 HpaX 4-hydroxyphenyl 84.7 4.2 9.1E-05 33.9 7.0 23 113-135 51-74 (412)
88 PRK09556 uhpT sugar phosphate 84.1 5 0.00011 33.9 7.3 23 114-136 73-96 (467)
89 PRK10091 MFS transport protein 83.8 3.4 7.3E-05 33.8 6.0 26 111-136 44-70 (382)
90 TIGR00881 2A0104 phosphoglycer 83.3 6.8 0.00015 30.7 7.3 56 52-133 224-281 (379)
91 TIGR00900 2A0121 H+ Antiporter 83.2 7.3 0.00016 30.4 7.5 26 110-135 252-278 (365)
92 PRK10406 alpha-ketoglutarate t 83.2 8.5 0.00018 32.1 8.2 24 112-135 70-94 (432)
93 TIGR00892 2A0113 monocarboxyla 83.2 4.8 0.0001 34.1 6.8 21 116-136 65-86 (455)
94 PRK10473 multidrug efflux syst 82.8 6.7 0.00015 31.8 7.3 26 111-136 44-70 (392)
95 TIGR00710 efflux_Bcr_CflA drug 82.8 4.4 9.5E-05 32.3 6.1 25 111-135 248-273 (385)
96 TIGR00893 2A0114 d-galactonate 82.8 4.4 9.6E-05 31.7 6.0 26 111-136 35-61 (399)
97 PRK11902 ampG muropeptide tran 82.5 4.1 8.9E-05 33.5 6.0 21 115-135 256-277 (402)
98 PRK11195 lysophospholipid tran 82.4 6.5 0.00014 32.5 7.2 25 111-135 247-272 (393)
99 PRK09952 shikimate transporter 82.3 11 0.00023 31.7 8.6 24 113-136 72-96 (438)
100 PRK12382 putative transporter; 82.3 5.2 0.00011 32.5 6.5 23 113-135 59-82 (392)
101 COG2223 NarK Nitrate/nitrite t 82.0 4.1 8.8E-05 35.5 5.9 64 44-135 217-285 (417)
102 PRK10489 enterobactin exporter 82.0 4.8 0.0001 33.1 6.2 26 111-136 58-84 (417)
103 TIGR00885 fucP L-fucose:H+ sym 81.6 6.4 0.00014 33.0 6.9 26 110-135 43-69 (410)
104 TIGR00900 2A0121 H+ Antiporter 81.5 5.5 0.00012 31.1 6.2 26 111-136 40-66 (365)
105 PRK14995 methyl viologen resis 81.0 6.4 0.00014 33.7 6.8 59 52-135 267-326 (495)
106 PRK10133 L-fucose transporter; 80.9 8.3 0.00018 32.6 7.4 26 110-135 300-326 (438)
107 PRK03545 putative arabinose tr 80.9 6 0.00013 32.2 6.4 22 114-135 53-75 (390)
108 TIGR01301 GPH_sucrose GPH fami 80.6 5.7 0.00012 34.9 6.5 67 44-136 3-75 (477)
109 KOG2533|consensus 80.2 2.2 4.7E-05 37.7 3.8 62 44-131 272-336 (495)
110 TIGR00899 2A0120 sugar efflux 79.9 9.7 0.00021 30.2 7.2 23 113-135 243-266 (375)
111 TIGR00879 SP MFS transporter, 79.6 4.5 9.7E-05 32.7 5.2 26 110-135 76-102 (481)
112 PRK11195 lysophospholipid tran 79.5 6.8 0.00015 32.4 6.4 24 113-136 46-70 (393)
113 COG2270 Permeases of the major 79.4 5.9 0.00013 34.8 6.1 33 104-136 287-320 (438)
114 TIGR00805 oat sodium-independe 78.6 4.6 9.9E-05 36.4 5.4 59 52-134 338-397 (633)
115 PRK09528 lacY galactoside perm 78.4 9 0.00019 31.6 6.8 24 113-136 270-294 (420)
116 PRK05122 major facilitator sup 78.3 14 0.00031 30.0 7.8 24 112-135 256-280 (399)
117 PRK11043 putative transporter; 78.2 14 0.0003 30.1 7.7 25 112-136 48-73 (401)
118 PRK11102 bicyclomycin/multidru 77.9 8.6 0.00019 30.8 6.3 25 111-135 236-261 (377)
119 TIGR02718 sider_RhtX_FptX side 77.9 7.2 0.00016 31.8 6.0 20 116-135 255-275 (390)
120 PRK11043 putative transporter; 77.9 11 0.00023 30.8 7.0 24 112-135 245-269 (401)
121 PRK12382 putative transporter; 77.5 19 0.00042 29.2 8.4 26 111-136 255-281 (392)
122 PRK11646 multidrug resistance 76.9 12 0.00026 31.0 7.1 20 116-135 57-77 (400)
123 TIGR00902 2A0127 phenyl propri 76.9 12 0.00026 30.5 7.1 25 111-135 246-271 (382)
124 PRK11462 putative transporter; 76.8 14 0.00031 31.5 7.7 25 111-135 269-294 (460)
125 PRK10077 xylE D-xylose transpo 76.1 8.3 0.00018 32.1 5.9 25 111-135 61-86 (479)
126 PF00083 Sugar_tr: Sugar (and 75.5 2.9 6.4E-05 34.6 3.1 29 108-136 49-78 (451)
127 PRK11010 ampG muropeptide tran 75.2 16 0.00034 31.5 7.5 64 44-135 11-81 (491)
128 PRK10504 putative transporter; 74.3 16 0.00034 30.6 7.2 26 110-135 302-328 (471)
129 PRK10473 multidrug efflux syst 74.1 15 0.00033 29.8 6.9 25 111-135 245-270 (392)
130 PRK10213 nepI ribonucleoside t 72.4 21 0.00047 29.4 7.5 24 111-134 258-282 (394)
131 TIGR00887 2A0109 phosphate:H+ 72.4 23 0.00051 30.2 7.9 29 108-136 59-88 (502)
132 TIGR00792 gph sugar (Glycoside 71.6 9.7 0.00021 31.2 5.2 24 112-135 264-288 (437)
133 PRK10091 MFS transport protein 71.3 16 0.00035 29.7 6.5 27 110-136 240-267 (382)
134 PRK11128 putative 3-phenylprop 70.9 17 0.00038 29.5 6.6 23 113-135 248-271 (382)
135 PF05977 MFS_3: Transmembrane 70.3 19 0.00041 31.9 7.0 33 104-136 41-77 (524)
136 PRK10642 proline/glycine betai 69.9 34 0.00074 29.1 8.4 23 113-135 65-88 (490)
137 PF13937 DUF4212: Domain of un 68.3 34 0.00074 23.1 6.7 25 43-70 10-36 (81)
138 PTZ00207 hypothetical protein; 68.2 24 0.00053 31.9 7.4 12 125-136 82-93 (591)
139 PRK06814 acylglycerophosphoeth 68.1 18 0.00039 34.2 6.8 20 116-135 63-83 (1140)
140 TIGR01272 gluP glucose/galacto 67.7 35 0.00076 27.5 7.7 25 111-135 184-209 (310)
141 TIGR02972 TMAO_torE trimethyla 67.6 19 0.00041 22.1 4.5 29 43-71 13-42 (47)
142 PRK15402 multidrug efflux syst 67.5 26 0.00056 28.6 6.9 22 114-135 260-282 (406)
143 TIGR00903 2A0129 major facilit 67.5 14 0.00029 30.7 5.3 23 113-135 34-57 (368)
144 TIGR03647 Na_symport_sm probab 67.1 35 0.00076 22.8 7.2 29 42-73 5-34 (77)
145 PRK14995 methyl viologen resis 67.0 36 0.00078 29.1 7.9 21 115-135 51-72 (495)
146 PRK09848 glucuronide transport 66.0 17 0.00036 30.4 5.6 21 115-135 274-295 (448)
147 PF06796 NapE: Periplasmic nit 66.0 20 0.00042 22.8 4.6 30 43-72 21-51 (56)
148 TIGR02973 nitrate_rd_NapE peri 65.1 24 0.00051 21.2 4.5 29 43-71 8-37 (42)
149 COG4708 Predicted membrane pro 63.9 9.4 0.0002 29.1 3.3 28 108-135 137-165 (169)
150 PF12832 MFS_1_like: MFS_1 lik 63.2 39 0.00085 22.0 7.1 28 108-135 38-66 (77)
151 TIGR00898 2A0119 cation transp 62.2 7 0.00015 33.0 2.7 25 111-135 133-158 (505)
152 TIGR00899 2A0120 sugar efflux 61.6 38 0.00082 26.8 6.7 21 115-135 43-64 (375)
153 TIGR00889 2A0110 nucleoside tr 61.4 17 0.00037 30.4 4.9 28 108-135 254-282 (418)
154 PF01306 LacY_symp: LacY proto 61.1 37 0.00081 29.4 6.9 24 112-135 266-290 (412)
155 KOG3626|consensus 61.1 11 0.00025 35.1 4.0 45 52-124 400-444 (735)
156 TIGR00892 2A0113 monocarboxyla 59.8 32 0.00069 29.1 6.3 54 52-131 249-303 (455)
157 KOG0255|consensus 59.3 6 0.00013 33.8 1.8 28 109-136 122-150 (521)
158 PRK08633 2-acyl-glycerophospho 59.2 23 0.00049 33.2 5.7 23 113-135 55-78 (1146)
159 PRK09705 cynX putative cyanate 59.1 35 0.00076 28.0 6.3 24 113-136 52-76 (393)
160 PRK11102 bicyclomycin/multidru 57.8 19 0.00041 28.7 4.4 26 111-136 32-58 (377)
161 PF06609 TRI12: Fungal trichot 57.4 58 0.0013 29.7 7.8 23 113-135 86-109 (599)
162 PRK09669 putative symporter Ya 57.4 21 0.00046 29.8 4.8 23 113-135 272-295 (444)
163 PRK15011 sugar efflux transpor 56.4 56 0.0012 26.7 7.0 18 117-135 64-82 (393)
164 COG2814 AraJ Arabinose efflux 55.8 49 0.0011 28.6 6.8 28 106-134 248-276 (394)
165 TIGR00889 2A0110 nucleoside tr 54.8 75 0.0016 26.6 7.6 25 110-134 43-68 (418)
166 PRK10429 melibiose:sodium symp 54.0 30 0.00065 29.4 5.2 24 112-135 273-297 (473)
167 PRK10489 enterobactin exporter 53.1 83 0.0018 25.8 7.5 23 112-134 266-289 (417)
168 KOG0252|consensus 52.3 14 0.0003 33.2 2.9 25 112-136 91-116 (538)
169 PRK08633 2-acyl-glycerophospho 52.2 65 0.0014 30.2 7.4 25 111-135 275-300 (1146)
170 KOG0569|consensus 50.8 14 0.00031 32.7 2.7 22 114-135 69-91 (485)
171 TIGR00896 CynX cyanate transpo 50.8 20 0.00042 28.7 3.4 27 110-136 40-67 (355)
172 TIGR00883 2A0106 metabolite-pr 49.8 13 0.00028 29.3 2.2 18 118-135 48-66 (394)
173 KOG0254|consensus 49.3 18 0.00039 31.2 3.1 28 109-136 93-121 (513)
174 PRK15034 nitrate/nitrite trans 48.4 1.1E+02 0.0023 26.9 7.8 26 110-135 75-101 (462)
175 PRK11128 putative 3-phenylprop 41.9 1.3E+02 0.0027 24.5 6.9 21 114-134 48-69 (382)
176 KOG2532|consensus 38.4 2E+02 0.0042 25.2 7.9 73 29-134 250-324 (466)
177 PRK09874 drug efflux system pr 37.5 1.7E+02 0.0036 23.5 7.0 23 114-136 267-290 (408)
178 TIGR00902 2A0127 phenyl propri 34.6 1.9E+02 0.004 23.5 6.8 21 114-134 48-69 (382)
179 PF01102 Glycophorin_A: Glycop 34.4 88 0.0019 22.7 4.3 32 103-134 61-94 (122)
180 TIGR00894 2A0114euk Na(+)-depe 34.3 43 0.00092 28.0 3.1 24 113-136 84-108 (465)
181 TIGR00885 fucP L-fucose:H+ sym 30.8 2.6E+02 0.0056 23.3 7.2 20 116-135 280-300 (410)
182 PF01299 Lamp: Lysosome-associ 30.7 59 0.0013 26.6 3.2 18 119-136 281-299 (306)
183 KOG2504|consensus 29.6 1.6E+02 0.0036 25.9 6.0 62 46-133 298-362 (509)
184 PF04341 DUF485: Protein of un 29.4 1.8E+02 0.0039 19.5 7.4 28 46-73 17-45 (91)
185 PF01770 Folate_carrier: Reduc 28.2 2E+02 0.0043 25.1 6.1 34 40-73 241-276 (412)
186 PF03825 Nuc_H_symport: Nucleo 27.0 3.9E+02 0.0084 22.6 8.3 24 112-135 250-274 (400)
187 PRK11902 ampG muropeptide tran 25.8 3.6E+02 0.0079 21.9 7.3 24 52-75 7-30 (402)
188 COG1470 Predicted membrane pro 25.4 66 0.0014 28.9 2.7 21 114-134 491-513 (513)
189 TIGR01301 GPH_sucrose GPH fami 25.2 3.2E+02 0.0069 24.0 7.0 25 111-135 311-337 (477)
190 COG3104 PTR2 Dipeptide/tripept 24.2 3.1E+02 0.0068 24.6 6.8 29 46-74 22-51 (498)
191 PRK06814 acylglycerophosphoeth 24.2 2.7E+02 0.0059 26.4 6.8 23 111-133 267-290 (1140)
192 COG2211 MelB Na+/melibiose sym 24.0 1.4E+02 0.0031 26.4 4.6 29 107-135 274-303 (467)
193 PRK11486 flagellar biosynthesi 23.1 1.7E+02 0.0037 21.3 4.2 30 104-133 13-44 (124)
194 KOG3574|consensus 22.0 1.8E+02 0.004 26.0 4.8 62 44-136 30-100 (510)
195 COG0738 FucP Fucose permease [ 20.9 2.3E+02 0.0049 25.0 5.1 20 116-135 59-79 (422)
196 PF05631 DUF791: Protein of un 20.8 1.1E+02 0.0025 26.1 3.3 20 116-135 81-100 (354)
197 PF05640 NKAIN: Na,K-Atpase In 20.3 1.2E+02 0.0027 24.0 3.1 32 30-61 48-83 (200)
198 PF05977 MFS_3: Transmembrane 20.3 4.5E+02 0.0098 23.3 7.0 22 113-134 262-284 (524)
199 TIGR02979 phageshock_pspD phag 20.2 91 0.002 19.9 1.9 26 110-135 10-35 (59)
200 COG2223 NarK Nitrate/nitrite t 20.1 4.6E+02 0.01 23.0 6.9 30 106-135 50-80 (417)
No 1
>KOG0253|consensus
Probab=99.66 E-value=2.2e-16 Score=134.40 Aligned_cols=102 Identities=33% Similarity=0.426 Sum_probs=83.3
Q ss_pred ccccccccchhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccc
Q psy1726 21 IRDLGLSTGVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTAD 99 (137)
Q Consensus 21 ~~~~~~~~~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (137)
.+++| ++.+|+ +|.+||+|+++| +||+..|.|||+++...++++..+.|.-.+ +. .....+|..+
T Consensus 310 ke~rg---~~~nLl-----sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~----r~--~p~e~e~~~~ 375 (528)
T KOG0253|consen 310 KEVRG---GTTNLL-----SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYN----RF--LPTELETRAN 375 (528)
T ss_pred ccccc---chHhhc-----ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccch----hc--chhHHHhhhc
Confidence 34466 789999 999999999999 999999999999999999998776553211 10 0122235556
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 100 CRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 100 c~~l~~~~y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
|+.+...+|++.++++++|+||.++ ++++||+|||..
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT 413 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT 413 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence 8888889999999999999999999 999999999963
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.14 E-value=1.4e-10 Score=105.42 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=39.1
Q ss_pred cccchhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726 26 LSTGVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEA 73 (137)
Q Consensus 26 ~~~~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~ 73 (137)
.|.++++|| +++++++|+++| +||+..++|||+.+|+|+++..
T Consensus 431 ~~~~~~~lf-----~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~ 474 (742)
T TIGR01299 431 IWGNFLRCF-----NPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKH 474 (742)
T ss_pred HHHHHHHHc-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688899 999999999999 9999999999999999999755
No 3
>TIGR00898 2A0119 cation transport protein.
Probab=98.24 E-value=3e-06 Score=71.71 Aligned_cols=70 Identities=27% Similarity=0.431 Sum_probs=61.4
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
+++++|+ +|.+++.++.++ .|++..+.||++.+|.|.+ ..+.
T Consensus 315 ~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~ 357 (505)
T TIGR00898 315 SFLDLFR----TPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL---------------------------------GGNI 357 (505)
T ss_pred cHHHHhC----ChHHHHHHHHHHHHHHHHHHHHHHHhcccccc---------------------------------CCCh
Confidence 6788997 889999999999 9999999999999998842 2345
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
|...++.+++++||.++ .+++||+|||.
T Consensus 358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~ 386 (505)
T TIGR00898 358 YLDLFISGLVELPAKLITLLLIDRLGRRY 386 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 88888999999999999 99999999986
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.00 E-value=1.8e-05 Score=67.65 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=58.4
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
.++++|+... .++++++++.++ .|++..+.|||+..|.|.++...+...... . ..+. .++-...
T Consensus 273 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~----------~-~~~~---~~~~~~~ 337 (502)
T TIGR00887 273 SWSDFFTHFF-KWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAA----------T-NNAY---EELYKTA 337 (502)
T ss_pred hHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCcc----------c-hhHH---HHHHHHH
Confidence 4677773100 123445667777 899989999999999999997654321000 0 0000 0000112
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
....++..++.+||.++ .+++||+|||+.
T Consensus 338 ~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~ 367 (502)
T TIGR00887 338 VGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchhH
Confidence 33455667789999999 999999999973
No 5
>KOG0255|consensus
Probab=97.67 E-value=0.00016 Score=61.96 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=62.7
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
.+.++|+ .|+++++++.++ .|+...++|||+.+.... ++.+.
T Consensus 310 ~~~~l~~----~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~---------------------------------lg~~~ 352 (521)
T KOG0255|consen 310 SFLDLFR----TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG---------------------------------LGGNI 352 (521)
T ss_pred chhhhhc----CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh---------------------------------cCchH
Confidence 4788896 777999999999 999999999999987763 56778
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
|...++.++.|+|+... .+.+|++|||..
T Consensus 353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~ 382 (521)
T KOG0255|consen 353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPP 382 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCcHHH
Confidence 99999999999999999 999999999863
No 6
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.27 E-value=0.0013 Score=56.23 Aligned_cols=75 Identities=5% Similarity=0.001 Sum_probs=53.1
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQ 106 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~ 106 (137)
.++++| ++ +++.+++.+ .++...+.||++..|+|.++... +. ....
T Consensus 240 ~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~--------------------------s~~~ 287 (490)
T PRK10642 240 SFKEIA-----TK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHY--------------------------SEDH 287 (490)
T ss_pred CHHHHH-----HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHH
Confidence 466777 44 445566666 77778899999999999988543 21 0111
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 107 DYMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 107 ~y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
......+..++.++|.++ +++.||+|||+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 317 (490)
T PRK10642 288 GVLIIIAIMIGMLFVQPVMGLLSDRFGRRP 317 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 233445567888889989 99999999996
No 7
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.54 E-value=0.017 Score=48.32 Aligned_cols=74 Identities=7% Similarity=0.109 Sum_probs=45.1
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
+++++| + .++..++++ .++...+++|++..|+|.++.+... .+...
T Consensus 234 ~~~~l~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g--------------------------~s~~~ 280 (432)
T PRK10406 234 SLKGLW-----R--NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG--------------------------MHANV 280 (432)
T ss_pred cHHHHH-----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CCHHH
Confidence 567778 3 333444444 4555578899999999998864311 11111
Q ss_pred H-HHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 Y-MDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y-~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
. ....+..++.+++..+ +.+.||+|||+
T Consensus 281 ~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~ 310 (432)
T PRK10406 281 ASGIMTAALFVFMLIQPLIGALSDKIGRRT 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 1 1222334445566667 99999999985
No 8
>KOG0569|consensus
Probab=96.47 E-value=0.0089 Score=52.61 Aligned_cols=78 Identities=9% Similarity=0.065 Sum_probs=57.5
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHh-hhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTV-CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ 106 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~-~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~ 106 (137)
++.++++ ++.+|+..++.+ +-++ ..-+-+.+..+..++|...+.. ...+
T Consensus 257 sl~~~~~----~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-------------------------~~~a 307 (485)
T KOG0569|consen 257 SLRQLLK----NPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-------------------------PEEA 307 (485)
T ss_pred cHHHHhc----CcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-------------------------HHHH
Confidence 6889997 888888877766 5555 4445577777888888766541 1223
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 107 DYMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 107 ~y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
-...+.+++..++..++ .+++||+|||+.
T Consensus 308 -~~an~~~g~v~~~~t~~~~~lid~~gRRpL 337 (485)
T KOG0569|consen 308 -QYANLGIGIVNLLSTLVSPFLIDRLGRRPL 337 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 44556778999999999 999999999973
No 9
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.43 E-value=0.016 Score=47.30 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=49.1
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHH
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAE 118 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~e 118 (137)
+....++...++ .++.....+|++..|+|.++...+. + ....-....+.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---------------s-----------~~~~~~~~~~~~~~~ 268 (406)
T PRK11551 215 GEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGL---------------S-----------RSQAGLVQIAFNIGG 268 (406)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------C-----------hhhhhHHHHHHHHHH
Confidence 444445566677 7777788889999999998864321 0 111123345567889
Q ss_pred HHHHHH-HHHHHHhcCCC
Q psy1726 119 FPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 119 ipG~il-~llidriGRK~ 135 (137)
++|.++ ..+.||+|||+
T Consensus 269 ~~~~~~~g~l~dr~g~~~ 286 (406)
T PRK11551 269 ALGSLLIGALMDRLRPRR 286 (406)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 999999 99999999975
No 10
>KOG0254|consensus
Probab=96.41 E-value=0.0045 Score=53.40 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=58.7
Q ss_pred hhhhccccccchhHHHHHHHHH--HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 30 VKGLFTTFQSYPSRINKAVFLF--HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 30 i~~LF~~~~~~~~~r~~Tl~l~--iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
..+++ .|..++++++.. ..|....+++.+..+.+++|+..+.. ++.
T Consensus 284 ~~~l~-----~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~--------------------------~~~- 331 (513)
T KOG0254|consen 284 WGELF-----SPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLK--------------------------SDT- 331 (513)
T ss_pred HHHhc-----CcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCC--------------------------Cch-
Confidence 66788 677888777644 56667788888999999998765430 111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+...++.++..+.+.++ .+++||+|||+.
T Consensus 332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l 361 (513)
T KOG0254|consen 332 FLASIILGVVNFLGTLVATYLVDRFGRRKL 361 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 77888999999999999 999999999973
No 11
>PRK12307 putative sialic acid transporter; Provisional
Probab=96.30 E-value=0.02 Score=47.07 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=48.7
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
+.+++| +.+..+..+.+. ..+.....++++..|+|.++...+. + ....
T Consensus 220 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~-----------~~~~ 268 (426)
T PRK12307 220 SMKGLF-----NRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGF---------------D-----------TGVV 268 (426)
T ss_pred HHHHHH-----hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHH
Confidence 456777 444444444444 5555555667788899988764321 0 1111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
-....+.+++.++|.++ ..+.||+|||+
T Consensus 269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~ 297 (426)
T PRK12307 269 SNLMTAAAFGTVLGNIVWGLCADRIGLKK 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 22345567889999999 99999999985
No 12
>TIGR00895 2A0115 benzoate transport.
Probab=96.24 E-value=0.033 Score=44.40 Aligned_cols=69 Identities=9% Similarity=-0.042 Sum_probs=49.2
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHH
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAE 118 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~e 118 (137)
+++..++++.++ ..+...+.++++..|+|.+....+. + ....-....+.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~-----------~~~~~~~~~~~~~~~ 298 (398)
T TIGR00895 245 QGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGF---------------S-----------LSLAATGGALFNFGG 298 (398)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHHHHHHHHHHHHH
Confidence 556666777777 7888888999999999965543222 0 111123345667888
Q ss_pred HHHHHH-HHHHHHhcCC
Q psy1726 119 FPGNYY-VFIRNRATYI 134 (137)
Q Consensus 119 ipG~il-~llidriGRK 134 (137)
++|.++ ..+.||+|||
T Consensus 299 ~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 299 VIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHhhcchH
Confidence 999999 9999999997
No 13
>PRK15075 citrate-proton symporter; Provisional
Probab=96.15 E-value=0.033 Score=46.57 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=44.9
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY 123 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i 123 (137)
..+..+ ..+.....++++..|.|.+++.. +. + ........++.+++.++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------~-~~~~~~~~~~~~~~~~~~~~ 292 (434)
T PRK15075 239 IVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHL-------------------------S-AADSLLVTLCVGVSNFIWLP 292 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------C-HHHHHHHHHHHHHHHHHHHH
Confidence 333434 55566778999999999988653 21 0 11223445567788899999
Q ss_pred H-HHHHHHhcCCC
Q psy1726 124 Y-VFIRNRATYIS 135 (137)
Q Consensus 124 l-~llidriGRK~ 135 (137)
+ +++.||+|||+
T Consensus 293 ~~g~l~Dr~g~r~ 305 (434)
T PRK15075 293 IGGALSDRIGRRP 305 (434)
T ss_pred HHHHHHHHhcchH
Confidence 9 99999999986
No 14
>TIGR00901 2A0125 AmpG-related permease.
Probab=95.94 E-value=0.019 Score=46.22 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH--HHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY--MDLLWTTLAEFPGN 122 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y--~~~~i~~l~eipG~ 122 (137)
+.+.+. ..+...++++++..|+|.++...+. +...+ ...+...++.+.|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---------------------------~~~~~g~~~~~~~~~~~~~g~ 262 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLDMGF---------------------------SKEEIALVAKINGLLGAILGG 262 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------CHHHHHHHhHHHHHHHHHHHH
Confidence 344445 5666788889999999988765321 22222 23333446788999
Q ss_pred HH-HHHHHHhcCCC
Q psy1726 123 YY-VFIRNRATYIS 135 (137)
Q Consensus 123 il-~llidriGRK~ 135 (137)
++ ..+.||+|||+
T Consensus 263 ~~~g~l~~r~g~~~ 276 (356)
T TIGR00901 263 LIGGIIMQPLNILY 276 (356)
T ss_pred HHHHHHHhhhhHHH
Confidence 99 99999999874
No 15
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.75 E-value=0.059 Score=46.09 Aligned_cols=69 Identities=3% Similarity=-0.091 Sum_probs=46.7
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHH
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLA 117 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~ 117 (137)
+++.++.....| .++...+..++...++|.+.+..+. +...+ ....+..++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gl---------------------------s~~~~g~~~~~~~~~ 83 (476)
T PLN00028 31 ARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNL---------------------------TKSDIGNAGIASVSG 83 (476)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHH
Confidence 445566777777 7777777777777777777654332 11211 223445667
Q ss_pred HHHHHHH-HHHHHHhcCCC
Q psy1726 118 EFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 118 eipG~il-~llidriGRK~ 135 (137)
.++|.++ +++.||+|||+
T Consensus 84 ~~~~~~~~G~l~dr~G~r~ 102 (476)
T PLN00028 84 SIFSRLAMGPVCDLYGPRY 102 (476)
T ss_pred HHHHHHHHHHHHHHhCChH
Confidence 8888889 99999999986
No 16
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.55 E-value=0.00039 Score=57.79 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=52.8
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHH-HHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFC-YYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ 106 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~-YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~ 106 (137)
.++++|+ .+.+++++++.+ +++...+. ++.+..+.|.+++..+. +.+
T Consensus 240 ~~~~l~~----~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~---------------------------~~~ 288 (451)
T PF00083_consen 240 SWRDLFR----NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI---------------------------SNS 288 (451)
T ss_pred eeeeccc----ccccccccccccccccccccccccccccccccccccccc---------------------------ccc
Confidence 4677885 556677877777 66555444 45566667776654332 122
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 107 DYMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 107 ~y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+...++.++..+++.++ .+++||+|||+.
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~ 318 (451)
T PF00083_consen 289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKL 318 (451)
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 56667778999999999 999999999964
No 17
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=95.40 E-value=0.068 Score=43.39 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=45.0
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
++..+.++ .++.....++.+..+.|.+++..+.. . ........+..++.++|.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------------------------~-~~~~~~~~~~~~~~~~~~ 336 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVS-------------------------T-DHAFLVSIIVGAVNFAFT 336 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCC-------------------------c-hHHHHHHHHHHHHHHHHH
Confidence 33344444 56666666777888889877654320 1 222455667788889999
Q ss_pred HH-HHHHHHhcCCC
Q psy1726 123 YY-VFIRNRATYIS 135 (137)
Q Consensus 123 il-~llidriGRK~ 135 (137)
++ .++.||+|||+
T Consensus 337 ~~~g~l~d~~~~~~ 350 (481)
T TIGR00879 337 FVAIFLVDRFGRRP 350 (481)
T ss_pred HHHHHHHHHhcchH
Confidence 99 99999999986
No 18
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=95.36 E-value=0.078 Score=44.08 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=45.1
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
+++++| +. +..+.++ .+++....+|++..|+|++++..+. +..
T Consensus 184 ~~~~ll-----~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~---------------------------s~~- 227 (368)
T TIGR00903 184 EFGALA-----GR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAGL---------------------------EDI- 227 (368)
T ss_pred HHHHHH-----cC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------------ChH-
Confidence 456677 32 3346666 8999999999999999999964322 111
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK 134 (137)
......+..+.|.+. .++.||+.||
T Consensus 228 --~~~~~~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 228 --AGDAVALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred --HHHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 233345555566666 8888888765
No 19
>PRK09952 shikimate transporter; Provisional
Probab=95.34 E-value=0.1 Score=43.93 Aligned_cols=65 Identities=9% Similarity=-0.074 Sum_probs=43.3
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHHHHHHH
Q psy1726 45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLAEFPGN 122 (137)
Q Consensus 45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~eipG~ 122 (137)
+..+.+. .+++..+++|++..|.|..+.+... .+.... ....+.++..+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g--------------------------~s~~~~~~~~~~~g~~~~i~~ 303 (438)
T PRK09952 250 GAFLKIIALRLCELLTMYIVTAFALNYSTQNLG--------------------------LPRELFLNIGLLVGGLSCLTI 303 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 3344455 6777788999999999987754211 112211 22334566677788
Q ss_pred HH-HHHHHHhcCCC
Q psy1726 123 YY-VFIRNRATYIS 135 (137)
Q Consensus 123 il-~llidriGRK~ 135 (137)
++ +++.||+|||+
T Consensus 304 ~~~g~l~Dr~grr~ 317 (438)
T PRK09952 304 PCFAWLADRFGRRR 317 (438)
T ss_pred HHHHHHHHHhCchH
Confidence 88 99999999986
No 20
>PRK10504 putative transporter; Provisional
Probab=95.33 E-value=0.09 Score=44.06 Aligned_cols=67 Identities=7% Similarity=-0.152 Sum_probs=47.1
Q ss_pred hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH-HHHHHHHHHHH
Q psy1726 42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY-MDLLWTTLAEF 119 (137)
Q Consensus 42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y-~~~~i~~l~ei 119 (137)
+.+++.+.++ ..|...+.++.+..++|.+.+..+. +.... +......++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~---------------------------s~~~~~~~~~~~~~~~~ 59 (471)
T PRK10504 7 SVRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGE---------------------------SPLHMHMVIVSYVLTVA 59 (471)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---------------------------CHHHHHHHHHHHHHHHH
Confidence 4466677777 8888888999999999998765332 11211 22233456667
Q ss_pred HHHHH-HHHHHHhcCCC
Q psy1726 120 PGNYY-VFIRNRATYIS 135 (137)
Q Consensus 120 pG~il-~llidriGRK~ 135 (137)
.+.++ +.+.||+|||+
T Consensus 60 ~~~~~~g~l~d~~g~r~ 76 (471)
T PRK10504 60 VMLPASGWLADRVGVRN 76 (471)
T ss_pred HHHHHHHHHHHHhchHH
Confidence 77888 99999999986
No 21
>PRK03893 putative sialic acid transporter; Provisional
Probab=95.27 E-value=0.11 Score=43.60 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=47.5
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHH
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLA 117 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~ 117 (137)
++.+++....++ .++...+.++.+...+|.+.+..+. +.. .-.......++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------------------s~~~~~~~~~~~~~~ 67 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGL---------------------------TTVQAASLISAAFIS 67 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHH
Confidence 455556666777 7888888888888888877654322 111 12233345677
Q ss_pred HHHHHHH-HHHHHHhcCCC
Q psy1726 118 EFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 118 eipG~il-~llidriGRK~ 135 (137)
.+++.++ +.+.||+|||+
T Consensus 68 ~~~~~~~~g~l~dr~g~r~ 86 (496)
T PRK03893 68 RWFGGLLLGAMGDRYGRRL 86 (496)
T ss_pred HHHHHHHHHHHHHHhCcHH
Confidence 7888888 99999999996
No 22
>PRK03699 putative transporter; Provisional
Probab=95.24 E-value=0.091 Score=43.22 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=45.8
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP 120 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eip 120 (137)
++++...+. .+++..+.++++..|+|.+++.. +.. .....+ ...+..++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s-------------------------~~~~~~-~~~~~~~~~~i 256 (394)
T PRK03699 203 WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMS-------------------------LEDAGN-LVSNFWMAYMV 256 (394)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------------------hHHhhH-HHHHHHHHHHH
Confidence 344555666 77888888999999999988543 210 011112 12244567888
Q ss_pred HHHH-HHHHHHhcCCCC
Q psy1726 121 GNYY-VFIRNRATYISQ 136 (137)
Q Consensus 121 G~il-~llidriGRK~~ 136 (137)
|.++ ..+.||+|||+.
T Consensus 257 g~~~~g~l~dr~~~~~~ 273 (394)
T PRK03699 257 GMWIFSFIVRFFDLQRI 273 (394)
T ss_pred HHHHHHHHHHHhchhhH
Confidence 9999 999999999863
No 23
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.22 E-value=0.088 Score=43.55 Aligned_cols=62 Identities=10% Similarity=-0.059 Sum_probs=44.1
Q ss_pred HHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-H
Q psy1726 48 VFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-V 125 (137)
Q Consensus 48 l~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~ 125 (137)
..+. ..+...++|+++..|+|.++.+.+.. .... -....+.+++.+.|.++ .
T Consensus 208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s-------------------------~~~a-g~~~~~~~i~~i~g~~~~g 261 (393)
T PRK09705 208 WTLGVYFGLINGGYASLIAWLPAFYIEIGAS-------------------------AQYS-GSLLALMTLGQAAGALLMP 261 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------------------hhhh-hHHHHHHHHHHHHHHHHHH
Confidence 3444 55566788999999999998753320 1111 22345677899999999 9
Q ss_pred HHHHHhcCCC
Q psy1726 126 FIRNRATYIS 135 (137)
Q Consensus 126 llidriGRK~ 135 (137)
.+.||+|||+
T Consensus 262 ~l~~r~~~~~ 271 (393)
T PRK09705 262 AMARHQDRRK 271 (393)
T ss_pred HHHhhccchH
Confidence 9999999985
No 24
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=95.17 E-value=0.14 Score=43.33 Aligned_cols=61 Identities=7% Similarity=-0.005 Sum_probs=42.4
Q ss_pred HHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH-H
Q psy1726 49 FLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY-V 125 (137)
Q Consensus 49 ~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il-~ 125 (137)
.++ ..++....++++..|+|.++...-. .+ ...-....+..++.++|.++ +
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g--------------------------~s~~~a~~~~~~~~~~~~ig~~~~G 315 (467)
T PRK09556 262 LLCFANIFLYIVRIGIDNWSPVYAFQELG--------------------------FSKEDAINTFTLFEIGALVGSLLWG 315 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5666777788999999988854211 11 11123345567788999999 9
Q ss_pred HHHHHhcCCC
Q psy1726 126 FIRNRATYIS 135 (137)
Q Consensus 126 llidriGRK~ 135 (137)
++.||+|||+
T Consensus 316 ~lsDr~g~r~ 325 (467)
T PRK09556 316 WLSDLANGRR 325 (467)
T ss_pred HHHHHHCCCc
Confidence 9999999986
No 25
>KOG0252|consensus
Probab=95.09 E-value=0.0068 Score=53.56 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=61.1
Q ss_pred hhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH
Q psy1726 30 VKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY 108 (137)
Q Consensus 30 i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y 108 (137)
+..+| ...+-++.+-.+ .||..-+.+|+..++...|+...+..-+. . +. +++=....
T Consensus 294 F~~~f-----~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~-----------~-~~-----~~~~~vA~ 351 (538)
T KOG0252|consen 294 FSRLF-----LRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSA-----------N-TY-----HELFKVAE 351 (538)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCc-----------c-hH-----HHHHHHHH
Confidence 44555 333556777778 99999999999999999999866541100 0 00 01111236
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.+.++...+.+||+-+ ..++|++|||..
T Consensus 352 ~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 352 GNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 7788999999999999 999999999964
No 26
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.06 E-value=0.14 Score=42.34 Aligned_cols=59 Identities=5% Similarity=0.012 Sum_probs=40.7
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
..++..++++++..|+|.+++..+. +.... .....+..++.++|.++ +.+.||
T Consensus 230 ~~~~~~~~~~~~~~~~p~~~~~~g~-------------------------s~~~~-~~~~~~~~~~~~ig~~~~g~l~dr 283 (402)
T TIGR00897 230 VRIINTIGLFGFAVFLPMFVAELGF-------------------------STSEW-LQIWGTFFFTNIVFNVIFGIVGDK 283 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-------------------------ChhHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556677889999999987754322 01111 22334566888999999 999999
Q ss_pred hcCCCC
Q psy1726 131 ATYISQ 136 (137)
Q Consensus 131 iGRK~~ 136 (137)
+|||+.
T Consensus 284 ~~~~~~ 289 (402)
T TIGR00897 284 LGWMNT 289 (402)
T ss_pred hcchhH
Confidence 998863
No 27
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.04 E-value=0.084 Score=46.41 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=46.2
Q ss_pred hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHH
Q psy1726 42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEF 119 (137)
Q Consensus 42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~ei 119 (137)
+..+....++ .-+...++|||+..++|..+.+. +. .............+...
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgl--------------------------s~~~a~~i~~~~~~~~~ 59 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKY--------------------------DDNHAYELFSAYCSLVY 59 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHH
Confidence 3445555556 66677889999999999888653 11 01122333444456667
Q ss_pred HHHHH-HHHHHHh-cCCCC
Q psy1726 120 PGNYY-VFIRNRA-TYISQ 136 (137)
Q Consensus 120 pG~il-~llidri-GRK~~ 136 (137)
++.++ +++.||+ |||+.
T Consensus 60 l~~ligG~LaDRilGrrr~ 78 (493)
T PRK15462 60 VTPILGGFLADKVLGNRMA 78 (493)
T ss_pred HHHHHHHHHHHHccCcHHH
Confidence 78888 9999999 99863
No 28
>PRK11663 regulatory protein UhpC; Provisional
Probab=94.99 E-value=0.14 Score=42.86 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=44.8
Q ss_pred chhHHHHHHHH-H-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHH
Q psy1726 40 YPSRINKAVFL-F-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTL 116 (137)
Q Consensus 40 ~~~~r~~Tl~l-~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l 116 (137)
.+.+++..+.+ + .|+...+.-+.+..++|.+.+..+. +. ..-+...+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------------------s~~~~g~~~~~~~~ 69 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGL---------------------------SRSDIGLLATLFYI 69 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCC---------------------------CHHHHHHHHHHHHH
Confidence 44555554433 3 5666666556777888988764332 11 11223345667
Q ss_pred HHHHHHHH-HHHHHHhcCCCC
Q psy1726 117 AEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 117 ~eipG~il-~llidriGRK~~ 136 (137)
+..++.++ +.+.||+|||+.
T Consensus 70 ~~~~~~~~~G~l~dr~g~r~~ 90 (434)
T PRK11663 70 TYGVSKFVSGIVSDRSNARYF 90 (434)
T ss_pred HHHHHHhhhhHHHhhcCCchh
Confidence 78888888 999999999974
No 29
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=94.80 E-value=0.14 Score=42.82 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=43.9
Q ss_pred HHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HH
Q psy1726 49 FLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VF 126 (137)
Q Consensus 49 ~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~l 126 (137)
... ..++....++++..|+|.+++..+.-. .....-.......++.++|.++ ..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~------------------------s~~~~~~~~~~~~l~~~~g~l~~g~ 301 (412)
T TIGR02332 246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGS------------------------SNIMIGLLAAIPQFCTIFGMIWWSR 301 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------------------cHHHhHHHhhHHHHHHHHHHHHHHH
Confidence 344 567778889999999999997532100 0111123356678889999999 99
Q ss_pred HHHHhcCCC
Q psy1726 127 IRNRATYIS 135 (137)
Q Consensus 127 lidriGRK~ 135 (137)
+.||+|||+
T Consensus 302 l~dr~~~r~ 310 (412)
T TIGR02332 302 HSDRLKERK 310 (412)
T ss_pred HhcccCccH
Confidence 999999764
No 30
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.50 E-value=0.29 Score=40.20 Aligned_cols=70 Identities=3% Similarity=-0.082 Sum_probs=43.6
Q ss_pred chhHHHH-HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHH
Q psy1726 40 YPSRINK-AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLA 117 (137)
Q Consensus 40 ~~~~r~~-Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~ 117 (137)
.++++++ .+.++ .++...+.++.+...+|.+.+..+. + ....-....+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------s-----------~~~~~~~~~~~~~~ 65 (426)
T PRK12307 12 ITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGL---------------T-----------DMEGAFLATAAFIG 65 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---------------C-----------HHHHHHHHHHHHHH
Confidence 4445444 44455 7777777777777778876543322 0 11112233345677
Q ss_pred HHHHHHH-HHHHHHhcCCC
Q psy1726 118 EFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 118 eipG~il-~llidriGRK~ 135 (137)
.+.|.++ +.+.||+|||+
T Consensus 66 ~~l~~~~~g~l~dr~g~r~ 84 (426)
T PRK12307 66 RPFGGALFGLLADKFGRKP 84 (426)
T ss_pred HHHHHHHHHHHHHHhCChH
Confidence 7778888 99999999996
No 31
>TIGR00893 2A0114 d-galactonate transporter.
Probab=94.44 E-value=0.26 Score=38.70 Aligned_cols=63 Identities=6% Similarity=-0.135 Sum_probs=43.6
Q ss_pred HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH
Q psy1726 47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY 124 (137)
Q Consensus 47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il 124 (137)
...+. .++...+.++++..|+|.++..... .+ ...-....+..++.++|.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~ 270 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERG--------------------------LSILEAGFMASLPGIVGFIGMIL 270 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--------------------------ccHHHhhHHHHHHHHHHHHHHHH
Confidence 34445 6777788888899999988754311 01 11123345667888999999
Q ss_pred -HHHHHHhcCCC
Q psy1726 125 -VFIRNRATYIS 135 (137)
Q Consensus 125 -~llidriGRK~ 135 (137)
..+.||+|||+
T Consensus 271 ~g~~~~~~~~~~ 282 (399)
T TIGR00893 271 GGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHhhcc
Confidence 99999999995
No 32
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=94.41 E-value=0.27 Score=38.98 Aligned_cols=65 Identities=6% Similarity=-0.030 Sum_probs=44.0
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY 124 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il 124 (137)
+.+.+. ..+...+.++++..|+|.++.....- .....-....+..++.+++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~~~~~ 274 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGL-------------------------SANSALLVLMLSLILFFITIPL 274 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------ChhHHHHHHHHHHHHHHHHHHH
Confidence 345555 67777788889999999887532110 0111223345567788888888
Q ss_pred -HHHHHHhcCCC
Q psy1726 125 -VFIRNRATYIS 135 (137)
Q Consensus 125 -~llidriGRK~ 135 (137)
..+.||+|||+
T Consensus 275 ~g~l~dr~g~~~ 286 (394)
T TIGR00883 275 SGALSDRIGRRP 286 (394)
T ss_pred HHHHHHHhchHH
Confidence 99999999986
No 33
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=94.38 E-value=0.23 Score=41.87 Aligned_cols=26 Identities=12% Similarity=-0.073 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++..++.++ +.+.||+|||+.
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~ 95 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVF 95 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchh
Confidence 44566777888888 999999999963
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=94.30 E-value=0.26 Score=39.15 Aligned_cols=61 Identities=5% Similarity=-0.071 Sum_probs=39.2
Q ss_pred HHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-
Q psy1726 48 VFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY- 124 (137)
Q Consensus 48 l~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il- 124 (137)
+..+ .++...+.++......|.+.+..+. +.. .-....+..++.+++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (398)
T TIGR00895 20 ILSFLIMLMDGYDLAAMGFAAPAISAEWGL---------------------------DPVQLGFLFSAGLIGMAFGALFF 72 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhccCC---------------------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344 6666666677777778876643321 111 112233556777888888
Q ss_pred HHHHHHhcCCC
Q psy1726 125 VFIRNRATYIS 135 (137)
Q Consensus 125 ~llidriGRK~ 135 (137)
+.+.||+|||+
T Consensus 73 g~l~d~~g~~~ 83 (398)
T TIGR00895 73 GPLADRIGRKR 83 (398)
T ss_pred HHHHHHhhhHH
Confidence 99999999986
No 35
>PRK03699 putative transporter; Provisional
Probab=94.20 E-value=0.21 Score=41.05 Aligned_cols=69 Identities=6% Similarity=-0.015 Sum_probs=46.2
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHH
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLA 117 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~ 117 (137)
+++.+|-++.++ .++......+.+...+|++.+..+. +.. .-....+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~---------------------------s~~~~g~~~s~~~~~ 54 (394)
T PRK03699 2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNL---------------------------PVSSMSNTFTFLNAG 54 (394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCC---------------------------CHHHHHHHHHHHHHH
Confidence 345566666666 7777777777788888987654332 111 11223345677
Q ss_pred HHHHHHH-HHHHHHhcCCC
Q psy1726 118 EFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 118 eipG~il-~llidriGRK~ 135 (137)
...|.++ ..+.||+|||+
T Consensus 55 ~~i~~~~~g~l~dr~g~r~ 73 (394)
T PRK03699 55 ILISIFLNAWLMEIIPLKR 73 (394)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 7888888 99999999986
No 36
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=93.86 E-value=0.29 Score=39.96 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.+.++ +.+.||+|||+.
T Consensus 49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~ 75 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPLSDRVGRRPV 75 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHH
Confidence 44556777778888 999999999963
No 37
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=93.84 E-value=0.45 Score=38.78 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=37.4
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid 129 (137)
+++...+..+......|.+.+..+. +.. .=....+..++.++|.++ +.+.|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~~~~~~g~l~d 75 (406)
T PRK11551 23 VALLEGLDLQSAGVAAPRMAQEFGL---------------------------DVAQMGWAFSAGILGLLPGALLGGRLAD 75 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666677876654322 111 122334556778888888 99999
Q ss_pred HhcCCCC
Q psy1726 130 RATYISQ 136 (137)
Q Consensus 130 riGRK~~ 136 (137)
|+|||+.
T Consensus 76 r~g~r~~ 82 (406)
T PRK11551 76 RIGRKRI 82 (406)
T ss_pred HhCCchh
Confidence 9999974
No 38
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.84 E-value=0.36 Score=38.63 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726 45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY 123 (137)
Q Consensus 45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i 123 (137)
+....++ .++...+..+.+....|.+.+..+.. ....-....+..++.+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s--------------------------~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLT--------------------------TVDAASLISAALISRWFGAL 65 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------------------hhhHHHHHHHHHHHHHHHHH
Confidence 3334455 67777777777777778765443320 11112223345677777888
Q ss_pred H-HHHHHHhcCCC
Q psy1726 124 Y-VFIRNRATYIS 135 (137)
Q Consensus 124 l-~llidriGRK~ 135 (137)
+ +.+.||+|||+
T Consensus 66 ~~G~l~Dr~g~r~ 78 (405)
T TIGR00891 66 MFGLWGDRYGRRL 78 (405)
T ss_pred HHHHHHHHhccHH
Confidence 8 99999999996
No 39
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=93.74 E-value=0.41 Score=39.94 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHHhcC
Q psy1726 55 VCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRATY 133 (137)
Q Consensus 55 ~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidriGR 133 (137)
....+++++..+.|.+++..+. ..........+.+++.+.+.++ ..++||+||
T Consensus 282 ~~~~~~~~~~~~~p~i~~~~g~--------------------------~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~ 335 (479)
T PRK10077 282 QQFVGINVVLYYAPEIFKTLGA--------------------------STDIALLQTIIVGVINLTFTVLAIMTVDKFGR 335 (479)
T ss_pred HHHhChhHHHHHHHHHHHHcCC--------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344566777788988765432 0112245566778889999999 999999999
Q ss_pred CC
Q psy1726 134 IS 135 (137)
Q Consensus 134 K~ 135 (137)
|+
T Consensus 336 r~ 337 (479)
T PRK10077 336 KP 337 (479)
T ss_pred hH
Confidence 85
No 40
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=93.67 E-value=0.44 Score=36.91 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=45.6
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
++.+.+. .++...+++.+...+.|.++... +. ..........+.+++.++|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~i~~ 228 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGL--------------------------SAAEAGLLLSLFGLGGILGA 228 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHHHHH
Confidence 4444455 67777777888888888877542 11 11223445667788999999
Q ss_pred HH-HHHHHHhcCCC
Q psy1726 123 YY-VFIRNRATYIS 135 (137)
Q Consensus 123 il-~llidriGRK~ 135 (137)
++ ..+.||+|||+
T Consensus 229 ~~~~~~~~~~~~~~ 242 (352)
T cd06174 229 LLGGLLSDRLGRRR 242 (352)
T ss_pred HHHHHHHHHHHhhh
Confidence 99 99999999986
No 41
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=93.57 E-value=0.27 Score=42.03 Aligned_cols=63 Identities=11% Similarity=-0.085 Sum_probs=42.3
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY 123 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i 123 (137)
++.+++ .++.....++++..|+|.++... +. +.... -....+.+++.++|.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------s~~~a-~~~~~~~~~~~~ig~~ 306 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGL-------------------------SLETA-GAIAASFGLMNLFARP 306 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCC-------------------------CHHHH-HHHHHHHHHHHHHHHh
Confidence 344555 56666667788888999887543 21 01112 3344556788899999
Q ss_pred H-HHHHHHhcCC
Q psy1726 124 Y-VFIRNRATYI 134 (137)
Q Consensus 124 l-~llidriGRK 134 (137)
+ +++.||+|||
T Consensus 307 ~~G~lsDr~~~r 318 (476)
T PLN00028 307 AGGYLSDVAARR 318 (476)
T ss_pred hhHHHHHHHHHh
Confidence 9 9999999986
No 42
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=93.54 E-value=0.49 Score=39.84 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=38.1
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llid 129 (137)
..+...+.+|++..|+|.+++.. +. + ....-....+..++.++|.++ +++.|
T Consensus 261 ~~~~~~~~~~~~~~~~P~~l~~~~g~-------------------------s-~~~~~~~~~~~~~~~~~g~~~~G~l~d 314 (452)
T PRK11273 261 ANVFVYLLRYGILDWSPTYLKEVKHF-------------------------A-LDKSSWAYFLYEYAGIPGTLLCGWMSD 314 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567789999999998753 21 0 011223344677889999999 99999
Q ss_pred HhcC
Q psy1726 130 RATY 133 (137)
Q Consensus 130 riGR 133 (137)
|+++
T Consensus 315 r~~~ 318 (452)
T PRK11273 315 KVFR 318 (452)
T ss_pred HHcc
Confidence 9943
No 43
>PRK10054 putative transporter; Provisional
Probab=93.54 E-value=0.28 Score=40.68 Aligned_cols=68 Identities=3% Similarity=-0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP 120 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eip 120 (137)
.+|....+. ..|...++++.+.-++|..+.+. +. ...+.=....+..++.+.
T Consensus 5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~--------------------------s~~~~g~~~s~~~~~~~~ 58 (395)
T PRK10054 5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSL--------------------------SVDLIGYAMTIALTIGVV 58 (395)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHH
Confidence 344455566 78888888888888898877542 21 011111222233566777
Q ss_pred HHHH-HHHHHHhcCCCC
Q psy1726 121 GNYY-VFIRNRATYISQ 136 (137)
Q Consensus 121 G~il-~llidriGRK~~ 136 (137)
+.++ +.+.||+|||+.
T Consensus 59 ~~~~~G~l~Dr~g~k~~ 75 (395)
T PRK10054 59 FSLGFGILADKFDKKRY 75 (395)
T ss_pred HHHHHHHHHhhcCcchh
Confidence 7888 999999999974
No 44
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.47 E-value=0.45 Score=38.09 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid 129 (137)
..+...+.++++..|+|.++..... .+.. .-....+.+++.++|.++ .++.|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~s~~~~~~~~~~~~~~~~~g~~~~g~l~d 299 (405)
T TIGR00891 246 LVLFANLYSHPIQDLLPTYLKADLG--------------------------LSPHTVANIVVFSNIGAIVGGCVFGFLGD 299 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777888987754211 1111 122344667889999999 99999
Q ss_pred HhcCCCC
Q psy1726 130 RATYISQ 136 (137)
Q Consensus 130 riGRK~~ 136 (137)
|+|||+.
T Consensus 300 r~g~~~~ 306 (405)
T TIGR00891 300 WLGRRKA 306 (405)
T ss_pred HhCchhh
Confidence 9999863
No 45
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=93.09 E-value=0.3 Score=42.02 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHH
Q psy1726 45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~ 122 (137)
+....++ ..+...++||++.-++|.++...+.- ..+ ...-.......++...+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l------------------------g~s~~~ag~~~~~~~~~~~~~~ 65 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGL------------------------GFSQEQAFIIFGAYSALVYLLT 65 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566 77778899999999999888653100 011 122333445567788888
Q ss_pred HH-HHHHHH-hcCCC
Q psy1726 123 YY-VFIRNR-ATYIS 135 (137)
Q Consensus 123 il-~llidr-iGRK~ 135 (137)
++ +++.|| +|||+
T Consensus 66 ~~~G~laDr~~G~~~ 80 (475)
T TIGR00924 66 SVGWWFGDRVWGTKK 80 (475)
T ss_pred hhHHHHHHhhcchHH
Confidence 88 999999 89986
No 46
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=92.84 E-value=0.78 Score=36.84 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=38.6
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
..+...+.|+++..|+|.+++..+.. ....-....+..++.++|.++ .++.||
T Consensus 205 ~~~~~~~~~~~~~~~lp~~~~~~g~~--------------------------~~~~g~~~~~~~~~~i~~~~~~g~l~dr 258 (355)
T TIGR00896 205 FFGLQSGLYYSLIGWLPAILISHGAS--------------------------AATAGSLLALMQLAQAASALLIPALARR 258 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 44556778899999999988643220 111123344567889999999 999999
Q ss_pred hcCC
Q psy1726 131 ATYI 134 (137)
Q Consensus 131 iGRK 134 (137)
+|+|
T Consensus 259 ~~~~ 262 (355)
T TIGR00896 259 VKDQ 262 (355)
T ss_pred hccc
Confidence 9543
No 47
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=92.72 E-value=0.35 Score=39.98 Aligned_cols=67 Identities=6% Similarity=-0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG 121 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG 121 (137)
++|.....+ .++...+.++....++|.+++..+.. ....=....+..++...+
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s--------------------------~~~~g~~~~~~~~~~~i~ 64 (402)
T TIGR00897 11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLS--------------------------PQQSASAFTLYGIAAAIS 64 (402)
T ss_pred CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCC--------------------------HHHhHHHHHHHHHHHHHH
Confidence 344444455 67777777777777888777543320 111222344667888899
Q ss_pred HHH-HHHHHHhcCCC
Q psy1726 122 NYY-VFIRNRATYIS 135 (137)
Q Consensus 122 ~il-~llidriGRK~ 135 (137)
.++ +.+.||+|||+
T Consensus 65 ~~~~g~l~dr~g~k~ 79 (402)
T TIGR00897 65 AWISGVVAEIIGPLK 79 (402)
T ss_pred HHHHHHHHHHcCcHH
Confidence 999 99999999996
No 48
>PRK03633 putative MFS family transporter protein; Provisional
Probab=92.65 E-value=0.46 Score=38.78 Aligned_cols=67 Identities=7% Similarity=0.002 Sum_probs=43.8
Q ss_pred hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHHHHH
Q psy1726 42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTLAEF 119 (137)
Q Consensus 42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l~ei 119 (137)
.++|....++ ..+...+....+...+|.+.++.+. +. ..=+......++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------s~~~~G~~~s~~~l~~~ 55 (381)
T PRK03633 3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHL---------------------------PTWQVGVVSSSYFTGNL 55 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCC---------------------------CHHHHHHHHHHHHHHHH
Confidence 4455556666 6777777777777888988765332 11 11222334456777
Q ss_pred HHHHH-HHHHHHhcCCC
Q psy1726 120 PGNYY-VFIRNRATYIS 135 (137)
Q Consensus 120 pG~il-~llidriGRK~ 135 (137)
.+.++ +.+.||+|||+
T Consensus 56 ~~~~~~g~l~dr~g~k~ 72 (381)
T PRK03633 56 VGTLLAGYVIKRIGFNR 72 (381)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 78888 99999999986
No 49
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=92.33 E-value=0.76 Score=35.56 Aligned_cols=59 Identities=10% Similarity=-0.120 Sum_probs=39.6
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
..+...+.++......|.+.+..+. .....-....+..++.+.+.++ +.+.||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 60 (352)
T cd06174 7 GFFLSGLDRGLLSPALPLLAEDLGL--------------------------SASQAGLIVSAFSLGYALGSLLAGYLSDR 60 (352)
T ss_pred HHHHHHHhhhhhHhhHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5666777777888888877654322 0112222344556777888888 999999
Q ss_pred hcCCCC
Q psy1726 131 ATYISQ 136 (137)
Q Consensus 131 iGRK~~ 136 (137)
+|||+.
T Consensus 61 ~g~r~~ 66 (352)
T cd06174 61 FGRRRV 66 (352)
T ss_pred hCCchh
Confidence 999973
No 50
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=92.23 E-value=0.43 Score=41.71 Aligned_cols=63 Identities=6% Similarity=-0.119 Sum_probs=42.9
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY 124 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il 124 (137)
++.+++ +.++..-+|-|+..|+|.++...-. ........++..+....+..+
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~---------------------------~~~~l~~~~l~~l~~~l~rpl 305 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP---------------------------DVNILRLAFFGPFIGAIARSV 305 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------------hHHHHHHHHHHHHHHHHHHHh
Confidence 456666 7777777888899999988653110 112233344556667777778
Q ss_pred -HHHHHHhcCCC
Q psy1726 125 -VFIRNRATYIS 135 (137)
Q Consensus 125 -~llidriGRK~ 135 (137)
+++.||+|+++
T Consensus 306 gG~LADRiG~~~ 317 (462)
T PRK15034 306 GGAISDKFGGVR 317 (462)
T ss_pred hHHHHHhcCchH
Confidence 99999999986
No 51
>PRK09528 lacY galactoside permease; Reviewed
Probab=92.13 E-value=0.63 Score=38.49 Aligned_cols=65 Identities=6% Similarity=-0.102 Sum_probs=40.7
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY 123 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i 123 (137)
+...++ ..|...++++...-++|..+... +. .....=+...+..++...+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--------------------------s~~~~g~~~s~~~l~~~i~~~ 64 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGL--------------------------SGTDTGIIFSANSLFALLFQP 64 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHHHHHH
Confidence 444555 66666777766677777666542 21 011112234456677777777
Q ss_pred H-HHHHHHhcCCCC
Q psy1726 124 Y-VFIRNRATYISQ 136 (137)
Q Consensus 124 l-~llidriGRK~~ 136 (137)
+ +.+.||+|||+.
T Consensus 65 ~~G~l~Dr~g~r~~ 78 (420)
T PRK09528 65 LYGLISDKLGLKKH 78 (420)
T ss_pred HHHHHHHHhCchHH
Confidence 8 999999999963
No 52
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=91.61 E-value=1.2 Score=37.44 Aligned_cols=63 Identities=3% Similarity=-0.101 Sum_probs=41.3
Q ss_pred HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726 47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY- 124 (137)
Q Consensus 47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il- 124 (137)
...++ ..++..+.+|++..|+|.++.....- +.....+. ..+..++.+++.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~------------------------s~~~~g~~-~~~~~~~~~i~~~~~ 317 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRV------------------------SGKENGLL-SSLPYLFAWLCSIFA 317 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------------ChHHhHHH-HHHHHHHHHHHHHHH
Confidence 34445 67788888899999999998653110 01112122 33456777888888
Q ss_pred HHHHHHhcCC
Q psy1726 125 VFIRNRATYI 134 (137)
Q Consensus 125 ~llidriGRK 134 (137)
+.+.||+++|
T Consensus 318 g~l~d~~~~~ 327 (465)
T TIGR00894 318 GYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHc
Confidence 9999998765
No 53
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=91.54 E-value=1.2 Score=37.28 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHHh
Q psy1726 53 RTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNRA 131 (137)
Q Consensus 53 wf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidri 131 (137)
-+.....+|++..|+|.++.....- .....-....+.+++.++|.++ .++.||+
T Consensus 260 ~~~~~~~~~~~~~~~p~~l~~~~g~-------------------------s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 314 (438)
T TIGR00712 260 NVFVYLLRYGVLDWSPTYLKEVKHF-------------------------ALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 314 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccCC-------------------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566789999999988753110 0111233445677889999999 9999999
Q ss_pred cCC
Q psy1726 132 TYI 134 (137)
Q Consensus 132 GRK 134 (137)
|++
T Consensus 315 ~~~ 317 (438)
T TIGR00712 315 FKG 317 (438)
T ss_pred ccC
Confidence 754
No 54
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=91.31 E-value=0.69 Score=38.49 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
..+...+.+++...++|.++.....- .....-......+++.++|.++ +++.||
T Consensus 263 ~~~~~~~~~~~~~~~~p~~~~~~~g~-------------------------s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 317 (485)
T TIGR00711 263 YMSLLGLGLYGSFYLLPLYLQQVLGY-------------------------TALQAGLHILPVGLAPMLSSPIAGRMGDK 317 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667788899999999888643110 0112233455677889999999 999999
Q ss_pred hcCCC
Q psy1726 131 ATYIS 135 (137)
Q Consensus 131 iGRK~ 135 (137)
+|||+
T Consensus 318 ~~~~~ 322 (485)
T TIGR00711 318 IDPRK 322 (485)
T ss_pred cCcHH
Confidence 99985
No 55
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=91.30 E-value=0.74 Score=36.66 Aligned_cols=58 Identities=14% Similarity=-0.043 Sum_probs=37.9
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCCh-hhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT-QDYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~-~~y~~~~i~~l~eipG~il-~llid 129 (137)
..+.....++++..|+|.++...-. .+. ..-....+..++.++|.++ .++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 286 (366)
T TIGR00886 233 LYSVTFGSFLGVSSIFAMFFKDQFG--------------------------LSKVTAGAYASLGGLLGSLARPLGGAISD 286 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--------------------------CcHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 4444555677888899988754311 111 1122344566778889988 99999
Q ss_pred HhcCCC
Q psy1726 130 RATYIS 135 (137)
Q Consensus 130 riGRK~ 135 (137)
|+|||+
T Consensus 287 r~g~~~ 292 (366)
T TIGR00886 287 RLGGAR 292 (366)
T ss_pred hhccch
Confidence 999975
No 56
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=90.91 E-value=1.2 Score=34.94 Aligned_cols=28 Identities=4% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
....+.+++.++|.++ .++.||+|||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 272 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQKT 272 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455677888999999 999999999864
No 57
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=90.61 E-value=1.2 Score=39.09 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.3
Q ss_pred HH-HHHhhhHHH---HHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726 50 LF-HRTVCAFCY---YGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY- 124 (137)
Q Consensus 50 l~-iwf~~~~~Y---yGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il- 124 (137)
+| +-++..++| ||+.-|.|..+.+...- +. .+.=....+.-.+.+||.++
T Consensus 254 iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~------------------------s~-~~a~~a~~lfE~agl~G~Ll~ 308 (448)
T COG2271 254 IWLLALANVFVYVVRYGINDWGPLYLSEVKGF------------------------SL-VKANWAISLFEVAGLPGTLLA 308 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCC------------------------CH-HHHHHHHHHHHHHhhHHHHHH
Confidence 45 555555666 99999999988653220 01 12234455678999999999
Q ss_pred HHHHHHh--cCC
Q psy1726 125 VFIRNRA--TYI 134 (137)
Q Consensus 125 ~llidri--GRK 134 (137)
+++.||+ |||
T Consensus 309 GwlSDklfkgrR 320 (448)
T COG2271 309 GWLSDKLFKGRR 320 (448)
T ss_pred HHHHHHhccccc
Confidence 9999986 565
No 58
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=90.48 E-value=0.99 Score=35.91 Aligned_cols=25 Identities=12% Similarity=-0.095 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++.+.+.++ +.+.||+|||+
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr~g~r~ 68 (366)
T TIGR00886 43 VAVPVLAGAVLRIILGFLVDKFGPRY 68 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 34556777888888 99999999996
No 59
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=90.38 E-value=1.7 Score=35.24 Aligned_cols=69 Identities=7% Similarity=-0.094 Sum_probs=40.6
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh---HHHHHHHHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD---YMDLLWTTLAE 118 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~---y~~~~i~~l~e 118 (137)
+.+....+| ..+...++++.....+|.++++.+.. . ..... -....+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------~----------~~~~~~~~g~~~~~~~~~~ 67 (408)
T PRK09874 12 WKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVT--------------G----------HSALNMWSGLVFSITFLFS 67 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCc--------------c----------chhHHHHHHHHHHHHHHHH
Confidence 344445556 66667777777777888877543220 0 00000 12233445566
Q ss_pred HHHHHH-HHHHHHhcCCC
Q psy1726 119 FPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 119 ipG~il-~llidriGRK~ 135 (137)
..+.++ +.+.||+|||+
T Consensus 68 ~~~~~~~g~l~dr~g~r~ 85 (408)
T PRK09874 68 AIASPFWGGLADRKGRKI 85 (408)
T ss_pred HHHHHHHHHHhhhhCcHH
Confidence 667777 89999999986
No 60
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=90.19 E-value=0.79 Score=38.33 Aligned_cols=67 Identities=6% Similarity=-0.085 Sum_probs=37.0
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChh-hHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQ-DYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~-~y~~~~i~~l~eipG~il-~llid 129 (137)
++|+..+.+|++..|++.-+...... ...... ..+.. .=....+..++...|.++ +.+.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~p~l~----~i~~~~--------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d 76 (413)
T PRK15403 15 LFFPMALILYDFAAYLTTDLIQPGII----NVVRDF--------------NADVSLAPASVSLYLAGGMALQWLLGPLSD 76 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHH----HHHHHh--------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 57777888899988888644322110 000000 00111 111122334566677777 99999
Q ss_pred HhcCCCC
Q psy1726 130 RATYISQ 136 (137)
Q Consensus 130 riGRK~~ 136 (137)
|+|||+.
T Consensus 77 r~Grr~~ 83 (413)
T PRK15403 77 RIGRRPV 83 (413)
T ss_pred HcCchHH
Confidence 9999973
No 61
>PRK11663 regulatory protein UhpC; Provisional
Probab=90.07 E-value=1.9 Score=36.13 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=37.8
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhc-cCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llid 129 (137)
..+...+.++++..|+|.++... +. + .... -....+.+++.++|.++ +++.|
T Consensus 251 ~~~~~~~~~~~~~~~~p~~l~~~~g~---------------s----------~~~a-~~~~~~~~~~~~~g~~~~g~l~d 304 (434)
T PRK11663 251 SYVLVYVVRAAINDWGNLYMSETLGV---------------D----------LVTA-NSAVSMFELGGFIGALVAGWGSD 304 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC---------------C----------HHHH-HHHHHHHHHHHHHHHHHHhhhHH
Confidence 56667778889999999988543 21 0 0111 22344567888999999 99999
Q ss_pred Hhc
Q psy1726 130 RAT 132 (137)
Q Consensus 130 riG 132 (137)
|++
T Consensus 305 r~~ 307 (434)
T PRK11663 305 KLF 307 (434)
T ss_pred Hhc
Confidence 993
No 62
>PRK15075 citrate-proton symporter; Provisional
Probab=90.00 E-value=1.4 Score=36.74 Aligned_cols=67 Identities=7% Similarity=-0.130 Sum_probs=39.0
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH----HHHHHHHHHHHH
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY----MDLLWTTLAEFP 120 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y----~~~~i~~l~eip 120 (137)
-...++ .||...+-...+....|.+.+..+.. + ...... .......++-.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~--------------~----------~~~~~~~~~~~~~~~~~l~~~i 71 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPA--------------G----------NEFASLMLTFAVFGAGFLMRPL 71 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------------C----------CchHHHHHHHHHHHHHHHHhhh
Confidence 344455 67777777777778888877654320 0 000111 111222333356
Q ss_pred HHHH-HHHHHHhcCCCC
Q psy1726 121 GNYY-VFIRNRATYISQ 136 (137)
Q Consensus 121 G~il-~llidriGRK~~ 136 (137)
|.++ +.+.||+|||+.
T Consensus 72 g~~~~G~l~Dr~Grr~~ 88 (434)
T PRK15075 72 GAIVLGAYIDRVGRRKG 88 (434)
T ss_pred HHHHHHHHhhhhchHHH
Confidence 7888 999999999973
No 63
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=89.91 E-value=1.3 Score=36.81 Aligned_cols=63 Identities=10% Similarity=-0.081 Sum_probs=39.9
Q ss_pred HHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-
Q psy1726 47 AVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY- 124 (137)
Q Consensus 47 Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il- 124 (137)
++.++ .++...+....+....|.+.+..+.. ....-+......++.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s--------------------------~~~~~~~~~~~~~~~~~~~~~~ 57 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSS--------------------------LSQVQWVITSYMLANAISIPLT 57 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------------hhhhhHHHHHHHHHHHHHHHhH
Confidence 33444 56666666666666778776544320 111123344567788888888
Q ss_pred HHHHHHhcCCC
Q psy1726 125 VFIRNRATYIS 135 (137)
Q Consensus 125 ~llidriGRK~ 135 (137)
+.+.||+|||+
T Consensus 58 g~l~dr~g~r~ 68 (485)
T TIGR00711 58 GWLAKRFGTRR 68 (485)
T ss_pred HHHHHHhCcHH
Confidence 99999999996
No 64
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=89.85 E-value=1.7 Score=35.64 Aligned_cols=28 Identities=7% Similarity=-0.099 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
-+...+..++.+.+.++ +.+.||+|||+
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~ 69 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLISDKLGLKK 69 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34455677778888888 99999999986
No 65
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=89.70 E-value=1.2 Score=35.45 Aligned_cols=26 Identities=15% Similarity=0.002 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
...+..++.+.+.++ +.+.||+|||+
T Consensus 45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~ 71 (385)
T TIGR00710 45 TLTLYLLGFAAGQLLWGPLSDRYGRRP 71 (385)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChH
Confidence 344556777888888 99999999996
No 66
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=89.54 E-value=0.83 Score=35.92 Aligned_cols=26 Identities=12% Similarity=-0.074 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.+.++ +.+.||+|||+.
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~ 62 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVF 62 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeeh
Confidence 33556777888888 999999999974
No 67
>PF13347 MFS_2: MFS/sugar transport protein
Probab=89.47 E-value=2.4 Score=35.35 Aligned_cols=25 Identities=16% Similarity=-0.019 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.+..++.+++.++ ..+.+|+|+|+.
T Consensus 267 ~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 267 LIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHccceee
Confidence 3567788888888 999999999974
No 68
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=89.45 E-value=1.7 Score=35.45 Aligned_cols=24 Identities=8% Similarity=-0.200 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
+..++...+.++ +.+.||+|||+.
T Consensus 59 ~~~~~~~i~~~~~G~l~Dr~g~r~~ 83 (399)
T PRK05122 59 LQYLATLLSRPHAGRYADTLGPKKA 83 (399)
T ss_pred HHHHHHHHhchhhHhHHhccCCcch
Confidence 445566666777 999999999974
No 69
>PRK03545 putative arabinose transporter; Provisional
Probab=89.03 E-value=3 Score=34.05 Aligned_cols=25 Identities=24% Similarity=0.032 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+.+++.++|.++ ..+.||+|||.
T Consensus 247 ~~~~~~~~~~g~~~~g~l~dr~~~~~ 272 (390)
T PRK03545 247 LLLFGGAGIIGSVLFSRLGNRHPSGF 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhH
Confidence 44567889999999 99999999874
No 70
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=88.87 E-value=3.4 Score=38.27 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.|.++ +++.||+|||+.
T Consensus 208 ~s~~~lG~iiG~li~G~LsDR~GRR~~ 234 (742)
T TIGR01299 208 GLIVYLGMMVGAFFWGGLADKLGRKQC 234 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 34556888899999 999999999963
No 71
>PRK03893 putative sialic acid transporter; Provisional
Probab=88.84 E-value=1.5 Score=36.78 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
...+.+++.++|.++ +++.||+|||+
T Consensus 316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~ 342 (496)
T PRK03893 316 VLFFSGFGAAVGCCVGGFLGDWLGTRK 342 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 345667888999999 99999999985
No 72
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=88.80 E-value=1.6 Score=36.59 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++...+.++ +.+.||+|||+.
T Consensus 67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~ 93 (438)
T TIGR00712 67 LSAISIAYGFSKFIMGSVSDRSNPRVF 93 (438)
T ss_pred HHHHHHHHHHhhhccchhhhccCCcee
Confidence 34566777888888 999999999963
No 73
>PRK10133 L-fucose transporter; Provisional
Probab=88.61 E-value=2.6 Score=35.76 Aligned_cols=68 Identities=12% Similarity=-0.089 Sum_probs=43.0
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG 121 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG 121 (137)
+....+.+. +.|...+.........|++-+..+. .....-+......++...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~--------------------------s~~~~gl~~~~~~~g~~i~ 77 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--------------------------TNFQAGLIQSAFYFGYFII 77 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CHHHHHHHHHHHHHHHHHH
Confidence 333334444 5666677777777788876333221 0122233445667888888
Q ss_pred HHH-HHHHHHhcCCCC
Q psy1726 122 NYY-VFIRNRATYISQ 136 (137)
Q Consensus 122 ~il-~llidriGRK~~ 136 (137)
.++ +.++||+|||+.
T Consensus 78 ~~~~g~l~dr~G~r~~ 93 (438)
T PRK10133 78 PIPAGILMKKLSYKAG 93 (438)
T ss_pred HHHHHHHHHHhCcHHH
Confidence 888 999999999963
No 74
>PRK03633 putative MFS family transporter protein; Provisional
Probab=88.43 E-value=2.5 Score=34.44 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..+++++|.++ ..+.||+|||.
T Consensus 241 ~~~~~~~~~~~~~~~g~l~dr~~~~~ 266 (381)
T PRK03633 241 MALLVSAGILGQWPIGRLADRFGRLL 266 (381)
T ss_pred HHHHHHHHHHHHhhhHHHHHHcCcHH
Confidence 44667888999999 99999999975
No 75
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=88.39 E-value=2.4 Score=34.74 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++..++.++ +.+.||+|||+
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g~r~ 79 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIGRRP 79 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 34566777788888 99999999996
No 76
>PRK11010 ampG muropeptide transporter; Validated
Probab=87.88 E-value=2.1 Score=36.86 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+..+++++|.++ +.++||+|||+
T Consensus 266 ~~g~i~~iiG~ll~G~L~dr~g~~~ 290 (491)
T PRK11010 266 TLGLLATIVGALYGGILMQRLSLFR 290 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445789999999 99999999875
No 77
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=87.48 E-value=2.2 Score=36.94 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 56 CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 56 ~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
.+++||.++-|+|.++...+.. ....=...-+..++++|+.+. -++..|
T Consensus 220 qS~~~Y~~~~WLP~ili~~G~s--------------------------a~~aG~llsl~~l~~~~~~ll~P~la~R 269 (395)
T COG2807 220 QSLLYYIVIGWLPAILIDRGLS--------------------------AAEAGSLLSLMQLAQLPTALLIPLLARR 269 (395)
T ss_pred hHHHHHHHHHHHHHHHHHcCCC--------------------------HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999876541 111122344667888998888 777776
No 78
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=86.97 E-value=2.3 Score=33.32 Aligned_cols=28 Identities=0% Similarity=-0.223 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+...+..++...+.++ +.+.||+|||+.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r~~ 70 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLADKFGPRAV 70 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCccch
Confidence 3344567777888888 999999999974
No 79
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=86.26 E-value=3.5 Score=34.16 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++...+.++ +.+.||+|||+
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~ 86 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRY 86 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHH
Confidence 456777778888 99999999996
No 80
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=86.00 E-value=2.5 Score=36.62 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726 45 NKAVFLF-HRTVCAFCYYGVVLMTTELFEA 73 (137)
Q Consensus 45 ~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~ 73 (137)
+....++ +-++..++||++..|+|..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~ 50 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVK 50 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566 7777889999999999988754
No 81
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=85.78 E-value=2.5 Score=36.67 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=22.1
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEA 73 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~ 73 (137)
.|....++ +-+.-.++|||+..+++..+.+
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~ 43 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVK 43 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555 6677889999999999987754
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=85.22 E-value=3.8 Score=33.69 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++++++.++ ..+.||+|||+
T Consensus 260 ~~~~~~i~~~~~~G~l~dr~g~~~ 283 (393)
T PRK15011 260 TAAGLEIPTMLIAGYFAKRLGKRF 283 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHH
Confidence 345677888899 99999999985
No 83
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=85.13 E-value=3 Score=32.50 Aligned_cols=25 Identities=8% Similarity=-0.088 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++...+.++ +.+.||+|||+
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr~g~r~ 63 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDRFGRRR 63 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 33456677788888 99999999986
No 84
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=85.08 E-value=4 Score=35.65 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=51.8
Q ss_pred chhhhccccccchhHHHHHHHHHHHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhH
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY 108 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y 108 (137)
++++|.+|+.+-++++.....+..||...=++.++......+....-. -...+..
T Consensus 266 g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg-------------------------~s~~~l~ 320 (477)
T PF11700_consen 266 GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLG-------------------------MSTTQLI 320 (477)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------cCHHHHH
Confidence 566676666544444333333337877777777776666543332110 0123345
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK 134 (137)
...++..+..++|.++ .++-||+|-|
T Consensus 321 ~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 321 VFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6677889999999999 9999999988
No 85
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=84.96 E-value=1.8 Score=33.75 Aligned_cols=58 Identities=9% Similarity=0.032 Sum_probs=38.4
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC--hhhHHHHHHHHHHHHHHHHH-HHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN--TQDYMDLLWTTLAEFPGNYY-VFIR 128 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~--~~~y~~~~i~~l~eipG~il-~lli 128 (137)
..+...++++++..|+|.++..... .+ ........+.+++.+++.++ ..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (352)
T PF07690_consen 214 AFFLFFFVFSGFSFFLPLYLQEVLG--------------------------FSGPSQAGLLFSIFGIVGIIGSLLAGRLS 267 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHH--------------------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhhhhccC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667888899999986432211 12 12233355667778888888 9999
Q ss_pred HHhcCCC
Q psy1726 129 NRATYIS 135 (137)
Q Consensus 129 driGRK~ 135 (137)
||+|+|+
T Consensus 268 ~~~~~~~ 274 (352)
T PF07690_consen 268 DRFGRRR 274 (352)
T ss_dssp HHTTCHH
T ss_pred HHcCcHH
Confidence 9999753
No 86
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=84.85 E-value=6.6 Score=32.09 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+.+++++++.+. ..+.||+|||+.
T Consensus 260 ~~~~~i~~~~~~~~~g~l~~r~g~~~~ 286 (396)
T TIGR00882 260 TTMGELLNALIMFCAPLIINRIGAKNA 286 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 34456778888888 999999999874
No 87
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=84.66 E-value=4.2 Score=33.88 Aligned_cols=23 Identities=4% Similarity=-0.351 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++...+.+. +.+.||+|||+
T Consensus 51 ~~~~~~~~~~~~~g~l~dr~G~r~ 74 (412)
T TIGR02332 51 LFYAAYVICGIPSNIMLAIIGARR 74 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHhChHH
Confidence 334556666777 89999999986
No 88
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=84.11 E-value=5 Score=33.87 Aligned_cols=23 Identities=4% Similarity=-0.086 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK~~ 136 (137)
..++...+.++ +.+.||+|||+.
T Consensus 73 ~~~~~~~~~~~~G~l~Dr~g~r~~ 96 (467)
T PRK09556 73 FSITYGVGKTLVGYYADGKNTKQF 96 (467)
T ss_pred HHHHHHHHHhhhhhHhhccCccch
Confidence 45666677778 999999999974
No 89
>PRK10091 MFS transport protein AraJ; Provisional
Probab=83.81 E-value=3.4 Score=33.76 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.....++.+.|.++ +.+.||+|||+.
T Consensus 44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 44 ISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 34557788888888 999999999963
No 90
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=83.30 E-value=6.8 Score=30.69 Aligned_cols=56 Identities=5% Similarity=0.065 Sum_probs=36.5
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCC-hhhHHHHHHHHHHHHHHHHH-HHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLN-TQDYMDLLWTTLAEFPGNYY-VFIRN 129 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~-~~~y~~~~i~~l~eipG~il-~llid 129 (137)
..+...+.++++..|.|.++..... .+ ...-....+.+++.++|.++ .++.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~g--------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 277 (379)
T TIGR00881 224 GYVFVYVVRTGILDWSPLYLTQEKG--------------------------FSKEKASWAFTLYELGGLVGTLLAGWLSD 277 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------------------------CCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 4555566677888899987754211 11 12233445667888999999 99999
Q ss_pred HhcC
Q psy1726 130 RATY 133 (137)
Q Consensus 130 riGR 133 (137)
|.++
T Consensus 278 r~~~ 281 (379)
T TIGR00881 278 KLFN 281 (379)
T ss_pred HHcC
Confidence 8643
No 91
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=83.24 E-value=7.3 Score=30.42 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
...+.+++.++|.++ ..+.||.|||.
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFKRMA 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhH
Confidence 344567788899999 99999999875
No 92
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=83.23 E-value=8.5 Score=32.08 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+..++.++|.++ +.+.||+|||+
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Grr~ 94 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGRKK 94 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 3444555689999 99999999996
No 93
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=83.20 E-value=4.8 Score=34.11 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=15.7
Q ss_pred HHHHHHHHH-HHHHHHhcCCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~~ 136 (137)
++...+.++ +.++||+|||+.
T Consensus 65 ~~~~~~~~~~G~l~dr~g~r~~ 86 (455)
T TIGR00892 65 AVLYAGGPISSILVNRFGCRPV 86 (455)
T ss_pred HHHHHhhHHHHHHHHHcCchHH
Confidence 344555667 999999999973
No 94
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=82.83 E-value=6.7 Score=31.84 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.+.++ +.+.||+|||+.
T Consensus 44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~ 70 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIADRSGRKPV 70 (392)
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCChHH
Confidence 34455677778888 999999999963
No 95
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=82.76 E-value=4.4 Score=32.25 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+.+++.++|.++ ..+.||+|||+
T Consensus 248 ~~~~~~~~~~~~~~~g~l~~~~~~~~ 273 (385)
T TIGR00710 248 FALNIIAMIFGGFLNGRFIKKWGAKS 273 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34567888999999 99999999875
No 96
>TIGR00893 2A0114 d-galactonate transporter.
Probab=82.76 E-value=4.4 Score=31.68 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.+.++ +.+.||+|||+.
T Consensus 35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~ 61 (399)
T TIGR00893 35 FSAFSWGYVVGQFPGGWLLDRFGARKT 61 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCccee
Confidence 34566777888888 999999999974
No 97
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=82.49 E-value=4.1 Score=33.51 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HHHHHHhcCCC
Q psy1726 115 TLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 115 ~l~eipG~il-~llidriGRK~ 135 (137)
.+++++|.++ ..+.||+|||+
T Consensus 256 ~~~~i~g~~~~g~l~~r~g~~~ 277 (402)
T PRK11902 256 LAATIVGALAGGTLMVRLGLYR 277 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4568999999 99999999875
No 98
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=82.42 E-value=6.5 Score=32.52 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
....+++.++|.++ ..+.||.++++
T Consensus 247 ~~~~~~g~i~g~~~~~~l~~~~~~~~ 272 (393)
T PRK11195 247 QAVVAIGIAVGAGAAARLVTLETVLR 272 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34556777888888 78888777664
No 99
>PRK09952 shikimate transporter; Provisional
Probab=82.32 E-value=11 Score=31.70 Aligned_cols=24 Identities=13% Similarity=-0.122 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
+.-++...|.++ +.+.||+|||+.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHH
Confidence 334556788888 999999999963
No 100
>PRK12382 putative transporter; Provisional
Probab=82.25 E-value=5.2 Score=32.49 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++...+.++ +.+.||+|||+
T Consensus 59 ~~~~~~~i~~~~~G~l~Dr~g~r~ 82 (392)
T PRK12382 59 IQFLATVLTRGYAGRLADQYGAKR 82 (392)
T ss_pred HHHHHHHHHhhhhhHHHHhhcchH
Confidence 344555666677 99999999996
No 101
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=82.05 E-value=4.1 Score=35.54 Aligned_cols=64 Identities=9% Similarity=-0.087 Sum_probs=43.2
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
.+++..++ ..+...-++-|+..|+|.++...=. .+.-....+..+.-++|.
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg----------------------------~~~~~Ag~~a~~f~~~g~ 268 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG----------------------------LSPVTAGLIAFLFPLIGA 268 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------------CChhhHHHHHHHHHHHHH
Confidence 55666666 7777777788999999998864311 111122245566666666
Q ss_pred HH----HHHHHHhcCCC
Q psy1726 123 YY----VFIRNRATYIS 135 (137)
Q Consensus 123 il----~llidriGRK~ 135 (137)
++ +.+.||+|.++
T Consensus 269 l~Rp~GG~LsDR~Gg~r 285 (417)
T COG2223 269 LARPLGGWLSDRIGGRR 285 (417)
T ss_pred HHHhccchhhhhccchh
Confidence 66 79999999876
No 102
>PRK10489 enterobactin exporter EntS; Provisional
Probab=81.98 E-value=4.8 Score=33.13 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.....++.+++.++ +.+.||+|||+.
T Consensus 58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 58 VTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred HHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 33456677778888 999999999974
No 103
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=81.58 E-value=6.4 Score=33.04 Aligned_cols=26 Identities=8% Similarity=-0.165 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
......++.+.+.+. ..++||+|||+
T Consensus 43 l~s~~~~g~~i~~~~~g~l~~r~G~r~ 69 (410)
T TIGR00885 43 VQSAFYGGYFIMAIPAAIFMKKLSYKA 69 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 344566778888888 99999999996
No 104
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=81.49 E-value=5.5 Score=31.11 Aligned_cols=26 Identities=12% Similarity=-0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++.+.+.++ +.+.||+|||+.
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~ 66 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKV 66 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHH
Confidence 33445666677777 999999999963
No 105
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=80.99 E-value=6.4 Score=33.67 Aligned_cols=59 Identities=10% Similarity=-0.062 Sum_probs=38.3
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
.-+...+++++...++|..++....- .....=......+++...+.++ +.++||
T Consensus 267 ~~~~~~~~~~~~~~~~~~~lq~v~g~-------------------------s~~~ag~~~~~~~~~~~~~~~~~g~l~~r 321 (495)
T PRK14995 267 MAMTAMITLVGFELLMAQELQFVHGL-------------------------SPLEAGMFMLPVMVASGFSGPIAGILVSR 321 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667888888999877653210 0111122344456777888888 999999
Q ss_pred hcCCC
Q psy1726 131 ATYIS 135 (137)
Q Consensus 131 iGRK~ 135 (137)
+|||+
T Consensus 322 ~g~~~ 326 (495)
T PRK14995 322 LGLRL 326 (495)
T ss_pred cCchH
Confidence 99975
No 106
>PRK10133 L-fucose transporter; Provisional
Probab=80.87 E-value=8.3 Score=32.65 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
......++.+.|.++ ..+.||+|||+
T Consensus 300 ~~~~~~~~~~vG~~~~g~l~~r~g~~~ 326 (438)
T PRK10133 300 YLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 345667788999999 99999999875
No 107
>PRK03545 putative arabinose transporter; Provisional
Probab=80.86 E-value=6 Score=32.24 Aligned_cols=22 Identities=0% Similarity=-0.161 Sum_probs=16.7
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK~ 135 (137)
..++...+.+. +.+.||+|||+
T Consensus 53 ~~~~~~~~~~~~g~l~dr~g~r~ 75 (390)
T PRK03545 53 YAWVVALMSLPLMLLTSNVERRK 75 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCChHH
Confidence 34455666677 89999999996
No 108
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=80.64 E-value=5.7 Score=34.89 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=41.2
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
+.+.+.++ ++++..++|--..-.++-++...+. + ....-....+..+..+...
T Consensus 3 ~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~---------------~-----------~~~~~~i~~~~~l~~~i~~ 56 (477)
T TIGR01301 3 LRKLLRVASVAAGVQFGWALQLSLLTPYVQELGI---------------P-----------HAWASIIWLCGPLSGLLVQ 56 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------C-----------HHHHHHHHHHHHHHHHHHH
Confidence 35566777 8888888875555555555543322 0 1122333445566666677
Q ss_pred HH-HHHHH----HhcCCCC
Q psy1726 123 YY-VFIRN----RATYISQ 136 (137)
Q Consensus 123 il-~llid----riGRK~~ 136 (137)
.+ +.+.| |+|||+.
T Consensus 57 Pi~G~lSDr~~sr~GRRrp 75 (477)
T TIGR01301 57 PLVGYLSDRCTSRFGRRRP 75 (477)
T ss_pred hHeeehhcCCCCCCCChHH
Confidence 77 89999 5999973
No 109
>KOG2533|consensus
Probab=80.21 E-value=2.2 Score=37.70 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=42.9
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhcc-CccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASD-TRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPG 121 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG 121 (137)
..++.... .+|+....-||+..|+|.++.... .. .... =...+...++++.|
T Consensus 272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s-------------------------~~~a-~~ls~~~~~~g~v~ 325 (495)
T KOG2533|consen 272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYS-------------------------ELQA-NLLSTPYDVGGIVG 325 (495)
T ss_pred chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcC-------------------------hHHh-ccccchHHhhhHHH
Confidence 34555566 788888888999999999987621 10 0111 12234567889999
Q ss_pred HHH-HHHHHHh
Q psy1726 122 NYY-VFIRNRA 131 (137)
Q Consensus 122 ~il-~llidri 131 (137)
.++ +++.||+
T Consensus 326 ~i~ag~lsdr~ 336 (495)
T KOG2533|consen 326 LILAGYLSDRL 336 (495)
T ss_pred HHHHHHHHHHH
Confidence 999 9999994
No 110
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=79.90 E-value=9.7 Score=30.22 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..+..+++.++ ..+.||+|||+
T Consensus 243 ~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 243 TAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred HHHHHHHHHHHhHHHHHHHhcchh
Confidence 345567888888 99999999986
No 111
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=79.61 E-value=4.5 Score=32.72 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
...+..++...+.++ +.+.||+|||+
T Consensus 76 ~~~~~~~~~~i~~~~~g~l~d~~grr~ 102 (481)
T TIGR00879 76 VVSIFLVGGFIGALFAGWLSDRFGRKK 102 (481)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhhhHH
Confidence 344566777888888 99999999986
No 112
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=79.54 E-value=6.8 Score=32.41 Aligned_cols=24 Identities=8% Similarity=-0.165 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
...+....+.++ +.+.||+|||+.
T Consensus 46 ~~~l~~~l~~~~~G~laDr~grr~v 70 (393)
T PRK11195 46 FFVLAYIVLAPFVGAFADSFPKGRV 70 (393)
T ss_pred HHHHHHHHHHhhhhHhhhccCCchh
Confidence 334555556666 889999999974
No 113
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=79.36 E-value=5.9 Score=34.77 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=29.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 104 NTQDYMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 104 ~~~~y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+.+.++..+.+++..+||.++ .++-+|+|-|++
T Consensus 287 ~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v 320 (438)
T COG2270 287 STELLLIGIALSVVAALGAIIAGFLDERFGSKPV 320 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence 345688899999999999999 999999999965
No 114
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=78.61 E-value=4.6 Score=36.38 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=36.4
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
..+...++++++..|+|.+++..-.- +.....++..+..-.+.++|.++ ++++||
T Consensus 338 ~~~~~~~~~~~~~~~lP~yl~~~~g~------------------------s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r 393 (633)
T TIGR00805 338 AQVIDSLAFNGYITFLPKYLENQYGI------------------------SSAEANFLIGVVNLPAAGLGYLIGGFIMKK 393 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC------------------------cHHHHHHHhhhhhhhHHHHHHhhhhheeee
Confidence 55667788899999999999753210 00111122222222245678888 899999
Q ss_pred hcCC
Q psy1726 131 ATYI 134 (137)
Q Consensus 131 iGRK 134 (137)
++++
T Consensus 394 ~~~~ 397 (633)
T TIGR00805 394 FKLN 397 (633)
T ss_pred eccc
Confidence 8865
No 115
>PRK09528 lacY galactoside permease; Reviewed
Probab=78.45 E-value=9 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
+..+++++|.++ ..+.||+|||+.
T Consensus 270 ~~~~~~~~~~~~~g~l~dr~g~~~~ 294 (420)
T PRK09528 270 FQVFLEALIMFFAPFIINRIGAKNA 294 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchh
Confidence 346778899999 999999999864
No 116
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=78.27 E-value=14 Score=29.95 Aligned_cols=24 Identities=13% Similarity=-0.093 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+.+++.++|.++ ..+.||+|||+
T Consensus 256 ~~~~~~~~~~~~~~g~l~~r~~~~~ 280 (399)
T PRK05122 256 TLFGVAFVGARLLFGNLINRLGGLR 280 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4567788889888 99999999875
No 117
>PRK11043 putative transporter; Provisional
Probab=78.22 E-value=14 Score=30.09 Aligned_cols=25 Identities=8% Similarity=-0.185 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.+..++...+.++ +.+.||+|||+.
T Consensus 48 s~~~~~~~~~~~~~g~l~dr~g~r~~ 73 (401)
T PRK11043 48 SLFLAGFALGQLLWGPLSDRYGRKPV 73 (401)
T ss_pred HHHHHHHHHHHHhhhhHHhhcCCcHH
Confidence 3446666778888 999999999963
No 118
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=77.88 E-value=8.6 Score=30.76 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++.+++.++ ..+.||+|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~l~~r~g~~~ 261 (377)
T PRK11102 236 FALNIVFLFVMTIINSRFVRRVGALN 261 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 44667888899999 99999999985
No 119
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=77.88 E-value=7.2 Score=31.78 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=15.9
Q ss_pred HHHHHHHHH-HHHHHHhcCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~ 135 (137)
++.+.|.++ ..++||+|+|+
T Consensus 255 ~~~~~g~~~~g~l~~r~g~~~ 275 (390)
T TIGR02718 255 VTVLLGCGGGAWLVRRAGLWR 275 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 455667888 99999999875
No 120
>PRK11043 putative transporter; Provisional
Probab=77.87 E-value=11 Score=30.77 Aligned_cols=24 Identities=17% Similarity=-0.046 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
....++.++|.++ ..+.||+|+|+
T Consensus 245 ~~~~~~~~~g~~~~~~l~~r~~~~~ 269 (401)
T PRK11043 245 VPQTIAFLVGGYGCRAALQKWGGEQ 269 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3445677888888 89999998774
No 121
>PRK12382 putative transporter; Provisional
Probab=77.51 E-value=19 Score=29.16 Aligned_cols=26 Identities=12% Similarity=-0.170 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
....+++.+++.++ ..+.||+|||+.
T Consensus 255 ~~~~~~~~~~~~~~~g~l~~r~g~~~~ 281 (392)
T PRK12382 255 LTAFGGAFVLMRVLFGWMPDRFGGVKV 281 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 44567778889888 999999999863
No 122
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=76.95 E-value=12 Score=31.04 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=14.6
Q ss_pred HHHHHHHHH-HHHHHHhcCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~ 135 (137)
+..+...++ +.+.||+|||+
T Consensus 57 l~~~~~~~~~G~l~dr~g~k~ 77 (400)
T PRK11646 57 FIQQGLGIFGGAIADRFGAKP 77 (400)
T ss_pred HHHHHHHhhhhHHHHHhCchH
Confidence 344444566 89999999986
No 123
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=76.94 E-value=12 Score=30.54 Aligned_cols=25 Identities=12% Similarity=-0.148 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++|+++.++ ..+.||+|.|+
T Consensus 246 ~~~~~~~~i~~~~~~~~l~~r~g~~~ 271 (382)
T TIGR00902 246 WGIGVLAEIIIFAFSNKLFQNCSARD 271 (382)
T ss_pred HHHHHHHHHHHHHHhHHHHhhCCHHH
Confidence 34688999999888 89999999875
No 124
>PRK11462 putative transporter; Provisional
Probab=76.75 E-value=14 Score=31.45 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++.++|.++ ..+.||+|+|.
T Consensus 269 l~~~~i~~iig~~l~~~l~~r~gkk~ 294 (460)
T PRK11462 269 LTTYCVGNLIGSALAKPLTDWKCKVT 294 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 44556778888888 99999999874
No 125
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=76.07 E-value=8.3 Score=32.10 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++.+.|.++ +.+.||+|||+
T Consensus 61 ~s~~~ig~~~~~~~~G~l~dr~Grr~ 86 (479)
T PRK10077 61 VASALIGCIIGGALGGYCSNRFGRRD 86 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 44556788888999 99999999996
No 126
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=75.45 E-value=2.9 Score=34.59 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.+-.....++.+.|.++ +++.||+|||+.
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~ 78 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPA 78 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccc
Confidence 34455667888999999 999999999974
No 127
>PRK11010 ampG muropeptide transporter; Validated
Probab=75.17 E-value=16 Score=31.53 Aligned_cols=64 Identities=5% Similarity=-0.134 Sum_probs=39.0
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
.||.+.++ +.|...+.++-..-.+|..+...+. +.+........+... .+.
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~---------------------------~~~~ig~~~~~~~~~-~~~ 62 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENI---------------------------DLKTIGFFSLVGQAY-VFK 62 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------------CHHHHHHHHHHHHHH-HHH
Confidence 33455555 7778888888777778877654332 112122222223332 467
Q ss_pred HH-HHHHHHh-----cCCC
Q psy1726 123 YY-VFIRNRA-----TYIS 135 (137)
Q Consensus 123 il-~llidri-----GRK~ 135 (137)
++ +.++||+ |||+
T Consensus 63 ~l~gpl~Dr~~~~~~Grrr 81 (491)
T PRK11010 63 FLWSPLMDRYTPPFLGRRR 81 (491)
T ss_pred HHHHHHHHcccccCCCCch
Confidence 77 9999999 9986
No 128
>PRK10504 putative transporter; Provisional
Probab=74.34 E-value=16 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+...++.+++.++ ..+.||+|||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~r~g~~~ 328 (471)
T PRK10504 302 MMIPMVLGSMGMKRIVVQVVNRFGYRR 328 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 345567778888788 99999999885
No 129
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=74.11 E-value=15 Score=29.76 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+.+++.+.|.++ ..+.||+|||+
T Consensus 245 ~~~~~~~~i~~~~~~~~l~~r~g~~~ 270 (392)
T PRK10473 245 MALTAGVSMTVSFSTPFALGIFKPRT 270 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34567788888888 99999999875
No 130
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=72.40 E-value=21 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.449 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK 134 (137)
....+++.++|.++ ..+.||.+|+
T Consensus 258 ~~~~~~~~iig~~~~~~l~~r~~~~ 282 (394)
T PRK10213 258 LLSFGIASFVGTSLSSFILKRSVKL 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchh
Confidence 44567788888888 9999986544
No 131
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=72.39 E-value=23 Score=30.17 Aligned_cols=29 Identities=3% Similarity=0.037 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
........++.++|.++ +.+.||+|||+.
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~ 88 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRV 88 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 34555677888999999 999999999963
No 132
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=71.59 E-value=9.7 Score=31.21 Aligned_cols=24 Identities=8% Similarity=-0.088 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+..++.+++.++ ..+.||+|||.
T Consensus 264 ~~~~i~~ii~~~~~~~l~~r~g~~~ 288 (437)
T TIGR00792 264 SIAIVAGLIGVLLFPRLVKKFGRKI 288 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 4457888888888 99999999875
No 133
>PRK10091 MFS transport protein AraJ; Provisional
Probab=71.30 E-value=16 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
...+.+++.++|.++ .++.||+|+|+.
T Consensus 240 ~~~~~~~~~~ig~~~~g~l~~r~~~~~~ 267 (382)
T PRK10091 240 IMMLVGLGMVLGNLLSGRLSGRYSPLRI 267 (382)
T ss_pred HHHHHHHHHHHHhHHHheeccccCchhH
Confidence 345667889999999 999999998763
No 134
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=70.92 E-value=17 Score=29.54 Aligned_cols=23 Identities=13% Similarity=-0.112 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++++++.++ ..+.||+|+|+
T Consensus 248 ~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHH
Confidence 556788888888 88999999875
No 135
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=70.29 E-value=19 Score=31.93 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHH----HHHHHHhcCCCC
Q psy1726 104 NTQDYMDLLWTTLAEFPGNYY----VFIRNRATYISQ 136 (137)
Q Consensus 104 ~~~~y~~~~i~~l~eipG~il----~llidriGRK~~ 136 (137)
+.+.....++..+..+|..++ +.++||+.||+.
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrri 77 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRI 77 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 344566677777777776544 889999999963
No 136
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=69.86 E-value=34 Score=29.11 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+.-++...|.++ +.+.||+|||+
T Consensus 65 ~~~l~~~ig~~~~G~l~Dr~Grr~ 88 (490)
T PRK10642 65 VPFLIRPLGGLFFGMLGDKYGRQK 88 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHH
Confidence 344667788888 99999999996
No 137
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=68.34 E-value=34 Score=23.13 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=14.9
Q ss_pred HHHHHHHHH-HHHhhhHHHHHH-HHhHHHH
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGV-VLMTTEL 70 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl-~lw~P~L 70 (137)
.++.+..+. +||..++ |+ .+..++|
T Consensus 10 n~rl~~~lL~iW~vvsf---g~~~lfa~~L 36 (81)
T PF13937_consen 10 NLRLIAILLAIWFVVSF---GVGILFADEL 36 (81)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 445555666 8988764 45 4455543
No 138
>PTZ00207 hypothetical protein; Provisional
Probab=68.23 E-value=24 Score=31.93 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=10.5
Q ss_pred HHHHHHhcCCCC
Q psy1726 125 VFIRNRATYISQ 136 (137)
Q Consensus 125 ~llidriGRK~~ 136 (137)
+++.||+|||+.
T Consensus 82 G~L~Dr~G~R~v 93 (591)
T PTZ00207 82 SFIYDYLGPRPI 93 (591)
T ss_pred HHHHHHhCcHHH
Confidence 899999999863
No 139
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=68.06 E-value=18 Score=34.15 Aligned_cols=20 Identities=10% Similarity=-0.089 Sum_probs=14.4
Q ss_pred HHHHHHHHH-HHHHHHhcCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~ 135 (137)
+..+...++ +.+.||+|||+
T Consensus 63 l~~~l~~~~~G~laDr~~rk~ 83 (1140)
T PRK06814 63 LPFFIFSALAGQLADKYDKAK 83 (1140)
T ss_pred HHHHHHhhhHHhhhhhccHHH
Confidence 344444555 89999999986
No 140
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=67.67 E-value=35 Score=27.50 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
......+...|.++ ..++||+|+|+
T Consensus 184 ~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 184 TAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 34455677789999 99999999764
No 141
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=67.63 E-value=19 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHh
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELF 71 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~ 71 (137)
+...+++++ +-.....+-||+..|+-++|
T Consensus 13 flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 13 LGFIIVVLFPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677 77778888899999999887
No 142
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=67.54 E-value=26 Score=28.61 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=17.7
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK~ 135 (137)
..++.+.|.++ ..+.||+|||+
T Consensus 260 ~~~~~~~g~~~~g~l~~r~~~~~ 282 (406)
T PRK15402 260 VFGALIAGNLTLARLTSRRPLRS 282 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHH
Confidence 44567888888 99999999875
No 143
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=67.47 E-value=14 Score=30.70 Aligned_cols=23 Identities=13% Similarity=-0.211 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
...++...+.+. +++.||+|||+
T Consensus 34 ~~~~g~~i~~~~~G~l~Dr~grr~ 57 (368)
T TIGR00903 34 TYPAAFLALTIPSGLLLDRAFKRW 57 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccchH
Confidence 445677788888 99999999985
No 144
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=67.06 E-value=35 Score=22.83 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=17.1
Q ss_pred hHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726 42 SRINKAVFLF-HRTVCAFCYYGVVLMTTELFEA 73 (137)
Q Consensus 42 ~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~ 73 (137)
+.++.+..+. +||..+++ +...+++.+++
T Consensus 5 ~n~~li~~lL~iWf~vsfg---~~~lf~~~Ln~ 34 (77)
T TIGR03647 5 ANLRLIAVLLAIWFVVSFG---AGILFADELNS 34 (77)
T ss_pred HHHHHHHHHHHHHHHHHHh---HHHHHHHHHcC
Confidence 3445555566 89887754 54456665543
No 145
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=66.99 E-value=36 Score=29.08 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=15.6
Q ss_pred HHHHHHHHHH-HHHHHHhcCCC
Q psy1726 115 TLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 115 ~l~eipG~il-~llidriGRK~ 135 (137)
.++...+.+. +.+.||+|||+
T Consensus 51 ~l~~~~~~~~~G~l~D~~Grk~ 72 (495)
T PRK14995 51 SLVMAGMVLPMGALGDRIGFKR 72 (495)
T ss_pred HHHHHHHHHHHHHHHHHhccHH
Confidence 4444455566 99999999996
No 146
>PRK09848 glucuronide transporter; Provisional
Probab=66.01 E-value=17 Score=30.43 Aligned_cols=21 Identities=5% Similarity=-0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHH-HHHHHHhcCCC
Q psy1726 115 TLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 115 ~l~eipG~il-~llidriGRK~ 135 (137)
.++.+.+.++ ..+.+|+|+|+
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~ 295 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKN 295 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHH
Confidence 4556667777 88999999875
No 147
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=65.97 E-value=20 Score=22.79 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=24.3
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHhh
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELFE 72 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~ 72 (137)
+...+++++ +-.....+-||+..|+-+++.
T Consensus 21 flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~~~ 51 (56)
T PF06796_consen 21 FLFLAVVLFPILAVAFVGGYGFIVWMYQIFF 51 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677788 888888899999999998753
No 148
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=65.08 E-value=24 Score=21.16 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHhHHHHh
Q psy1726 43 RINKAVFLF-HRTVCAFCYYGVVLMTTELF 71 (137)
Q Consensus 43 ~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~ 71 (137)
+...+++++ +-.....+-||+..|+-+++
T Consensus 8 flfl~~~l~PiLsV~~V~~YGF~vWm~Q~~ 37 (42)
T TIGR02973 8 FLFLAAVIWPVLSVITVGGYGFAVWMYQIL 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677 77778888899999999876
No 149
>COG4708 Predicted membrane protein [Function unknown]
Probab=63.88 E-value=9.4 Score=29.07 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
++.-+.++++|+...++ ++++|++|+|.
T Consensus 137 lltw~tta~gEfvsl~vg~~~m~kl~kr~ 165 (169)
T COG4708 137 LLTWFTTALGEFVSLYVGALIMDKLGKRI 165 (169)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence 56777899999999999 99999999985
No 150
>PF12832 MFS_1_like: MFS_1 like family
Probab=63.18 E-value=39 Score=22.02 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
-....+.-+.++.+..+ +.++||.||+.
T Consensus 38 Gil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 38 GILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 44445566778888888 99999999975
No 151
>TIGR00898 2A0119 cation transport protein.
Probab=62.24 E-value=7 Score=33.00 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+..++.+.|.++ +.+.||+|||+
T Consensus 133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~ 158 (505)
T TIGR00898 133 QSCFFVGVLLGSFVFGYLSDRFGRKK 158 (505)
T ss_pred HHHHHHHHHHHHHhHHHhhhhccchH
Confidence 34556778888889 99999999996
No 152
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=61.65 E-value=38 Score=26.78 Aligned_cols=21 Identities=0% Similarity=-0.168 Sum_probs=15.6
Q ss_pred HHHHHHHHHH-HHHHHHhcCCC
Q psy1726 115 TLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 115 ~l~eipG~il-~llidriGRK~ 135 (137)
.++.++...+ +.+.||+|||+
T Consensus 43 ~~~~~~~~~~~g~l~Dr~g~r~ 64 (375)
T TIGR00899 43 AIVGIAVSQLLATRSDYQGDRK 64 (375)
T ss_pred HHHHHHHHHHHHHHHhccCCch
Confidence 3455566666 88999999886
No 153
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=61.45 E-value=17 Score=30.42 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
-....+..++++++.++ ..+.||+|||+
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~ 282 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKK 282 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 34455677899999988 99999999985
No 154
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=61.13 E-value=37 Score=29.44 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+..+.|++...+ -.+++|+|-|.
T Consensus 266 s~~v~~E~~~m~~~p~li~rig~k~ 290 (412)
T PF01306_consen 266 SVQVFLEALMMFFSPWLINRIGAKN 290 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHh
Confidence 3566789999999 99999999774
No 155
>KOG3626|consensus
Probab=61.07 E-value=11 Score=35.08 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY 124 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il 124 (137)
.+..-.+.+-|...++|.++|++ .+.+.+...++++...+|+..+
T Consensus 400 ~~~~~~~~~~G~~tFlPKyLE~Q----------------------------fg~sas~An~l~G~i~vp~~~~ 444 (735)
T KOG3626|consen 400 ASVIESLAITGYITFLPKYLETQ----------------------------FGISASLANILTGSIGVPAAAV 444 (735)
T ss_pred HHHHHHHHHhhHHHhhHHHHHHH----------------------------cCCCHHHHHHHhhhhhhhhhhh
Confidence 67778888999999999999875 2334466666777777775555
No 156
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=59.79 E-value=32 Score=29.10 Aligned_cols=54 Identities=4% Similarity=0.003 Sum_probs=34.2
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHHH-HHHHHH
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYY-VFIRNR 130 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~il-~llidr 130 (137)
.++...+++++...|+|.++...+. .....-....+.+++.+++.++ .++.||
T Consensus 249 ~~~l~~~~~~~~~~~l~~~~~~~g~--------------------------s~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 249 GNVIMFLGFFAPIIFLVPYAKDKGV--------------------------DEYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred HHHHHHHHccchHHHHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666777888888899987754221 0111122334567778888888 888886
Q ss_pred h
Q psy1726 131 A 131 (137)
Q Consensus 131 i 131 (137)
.
T Consensus 303 ~ 303 (455)
T TIGR00892 303 K 303 (455)
T ss_pred c
Confidence 3
No 157
>KOG0255|consensus
Probab=59.28 E-value=6 Score=33.83 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+...+.-++.+.|.++ +.+.||+|||+.
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~ 150 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPV 150 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHH
Confidence 3455667888899999 999999999963
No 158
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=59.21 E-value=23 Score=33.18 Aligned_cols=23 Identities=9% Similarity=-0.109 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
+..++.+.+.++ +.+.||+|||+
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~ 78 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNR 78 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHH
Confidence 445556667777 99999999996
No 159
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=59.09 E-value=35 Score=28.03 Aligned_cols=24 Identities=0% Similarity=-0.137 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
+..++...+.++ ..+.||+|||+.
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G~r~~ 76 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVSERRS 76 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhCchHH
Confidence 334666777777 999999999963
No 160
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=57.79 E-value=19 Score=28.74 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
..+..++...+.++ +.+.||+|||+.
T Consensus 32 ~~~~~~~~~~~~~~~g~l~d~~g~~~~ 58 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPMADSFGRKPV 58 (377)
T ss_pred HHHHHHHHHHHHHhhchHHhhcCChHH
Confidence 34556777788888 999999999963
No 161
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=57.43 E-value=58 Score=29.69 Aligned_cols=23 Identities=13% Similarity=-0.232 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
.-.++...+..+ +-+.|.+|||.
T Consensus 86 ~~~l~~av~~~~~G~LSDlfGRr~ 109 (599)
T PF06609_consen 86 AWTLASAVSFPFVGRLSDLFGRRY 109 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHhcchH
Confidence 345666666677 99999999995
No 162
>PRK09669 putative symporter YagG; Provisional
Probab=57.37 E-value=21 Score=29.78 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~ 135 (137)
...++.++|.++ ..+.||+|+|.
T Consensus 272 ~~~i~~ii~~~~~~~l~~r~gk~~ 295 (444)
T PRK09669 272 TGMIAGLFGALLSERLLGKFDRVR 295 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHH
Confidence 345667778888 89999999875
No 163
>PRK15011 sugar efflux transporter B; Provisional
Probab=56.45 E-value=56 Score=26.72 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=11.8
Q ss_pred HHHHHHHH-HHHHHHhcCCC
Q psy1726 117 AEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 117 ~eipG~il-~llidriGRK~ 135 (137)
+.+.+-++ .+ .||.|||+
T Consensus 64 ~~~~~~~~~~~-~dr~g~r~ 82 (393)
T PRK15011 64 GILVSQFLAGR-SDKRGDRK 82 (393)
T ss_pred HHHHHHHHHHH-Hhcccchh
Confidence 33444445 55 99999986
No 164
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=55.84 E-value=49 Score=28.59 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 106 QDYMDLLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 106 ~~y~~~~i~~l~eipG~il-~llidriGRK 134 (137)
..=+..++.+++.+.|+++ +.+.|| +.|
T Consensus 248 ~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 248 AVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 3455677889999999999 999999 544
No 165
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=54.80 E-value=75 Score=26.57 Aligned_cols=25 Identities=12% Similarity=-0.127 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK 134 (137)
...+..++.+.+.++ +.+.||+|||
T Consensus 43 ~~a~~~~~~~i~~~~~g~l~dr~g~~ 68 (418)
T TIGR00889 43 VYSSTGIAAILMPILVGIIADKWLSA 68 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345667888888889 9999999764
No 166
>PRK10429 melibiose:sodium symporter; Provisional
Probab=54.02 E-value=30 Score=29.39 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+.+++++++.++ ..+.||+|||+
T Consensus 273 ~~~~i~~ii~~~~~~~l~~r~gkk~ 297 (473)
T PRK10429 273 SYAGAANLVTLILFPRLVKSLSRRI 297 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 3456788888888 99999999985
No 167
>PRK10489 enterobactin exporter EntS; Provisional
Probab=53.13 E-value=83 Score=25.78 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK 134 (137)
.+.+++.++|.++ ..+.||.+++
T Consensus 266 ~~~~~g~~ig~~~~~~l~~~~~~~ 289 (417)
T PRK10489 266 AAVPLGAALGALTSGWLAHSARPG 289 (417)
T ss_pred HHHHHHHHHHHHHHHHhhhccCcc
Confidence 3456778888888 8888876554
No 168
>KOG0252|consensus
Probab=52.33 E-value=14 Score=33.23 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~~ 136 (137)
.+..++.+.|=++ +++-||+|||+.
T Consensus 91 ~~A~vGti~GQl~FG~lgD~~GRK~v 116 (538)
T KOG0252|consen 91 AAALVGTIFGQLFFGWLGDKFGRKKV 116 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 3556778888888 999999999975
No 169
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=52.20 E-value=65 Score=30.20 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGRK~ 135 (137)
..+.+++.++|.++ ..+.||++++.
T Consensus 275 ~~~~~ig~~~g~~~~g~l~~r~~~~~ 300 (1146)
T PRK08633 275 LAASAIGIGIGSLLAGRLSGRHIELG 300 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEcc
Confidence 44556777888888 88888888764
No 170
>KOG0569|consensus
Probab=50.78 E-value=14 Score=32.71 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK~ 135 (137)
..++.+.|.++ .++.||+|||.
T Consensus 69 f~iG~~~Gs~~~~~la~~~GRK~ 91 (485)
T KOG0569|consen 69 FFIGGMIGSFSSGLLADRFGRKN 91 (485)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH
Confidence 35778889999 99999999994
No 171
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=50.77 E-value=20 Score=28.67 Aligned_cols=27 Identities=7% Similarity=-0.221 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
...+..++...+.++ ..+.||+|||+.
T Consensus 40 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 67 (355)
T TIGR00896 40 LTALPVLCFAVLAPLAPWLARRFGEERS 67 (355)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCchHH
Confidence 344566777888888 999999999963
No 172
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=49.85 E-value=13 Score=29.28 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=14.9
Q ss_pred HHHHHHH-HHHHHHhcCCC
Q psy1726 118 EFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 118 eipG~il-~llidriGRK~ 135 (137)
.+.|.++ +.+.||+|||+
T Consensus 48 ~~i~~~~~G~l~dr~g~r~ 66 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKK 66 (394)
T ss_pred hhhHHHHhhhhhhhhhhHH
Confidence 3457788 99999999996
No 173
>KOG0254|consensus
Probab=49.26 E-value=18 Score=31.21 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 109 MDLLWTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 109 ~~~~i~~l~eipG~il-~llidriGRK~~ 136 (137)
+...+..++...|.++ +.+.|++|||..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455678888999999 999999999963
No 174
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=48.44 E-value=1.1e+02 Score=26.91 Aligned_cols=26 Identities=4% Similarity=-0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
...+..++..++.+. +.+.||+|.|+
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~ 101 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRR 101 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChH
Confidence 334455666666666 99999999885
No 175
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=41.91 E-value=1.3e+02 Score=24.46 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=15.4
Q ss_pred HHHHHHHHHHH-HHHHHHhcCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK 134 (137)
..++.+++.++ ..++||.|||
T Consensus 48 ~~l~~~l~~~~~g~l~dr~g~~ 69 (382)
T PRK11128 48 GLVARFLGSLLIAPRVKDPSQL 69 (382)
T ss_pred HHHHHHhhhHHHHHHHhhhcch
Confidence 34555666667 8899999984
No 176
>KOG2532|consensus
Probab=38.40 E-value=2e+02 Score=25.21 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=43.3
Q ss_pred chhhhccccccchhHHHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhh
Q psy1726 29 GVKGLFTTFQSYPSRINKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQD 107 (137)
Q Consensus 29 ~i~~LF~~~~~~~~~r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~ 107 (137)
.++++++ +++ ...+| ..|+...++|.+..|.|+.++....- ++..+-
T Consensus 250 P~~~i~t----s~~----vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f------------------------~v~~~G 297 (466)
T KOG2532|consen 250 PYKAILT----SPP----VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF------------------------DVRETG 297 (466)
T ss_pred CHHHHHc----CHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC------------------------Chhhhh
Confidence 4666664 433 33455 56677788899999999999865321 022222
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 108 YMDLLWTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 108 y~~~~i~~l~eipG~il-~llidriGRK 134 (137)
+... +--++.++-.++ +.+.||+-+|
T Consensus 298 ~~sa-lP~l~~~~~k~~~g~lsD~l~~~ 324 (466)
T KOG2532|consen 298 FLSA-LPFLAMAIVKFVAGQLSDRLTFR 324 (466)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3322 333445555556 8888887664
No 177
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=37.52 E-value=1.7e+02 Score=23.46 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK~~ 136 (137)
.+++.+.+.++ ..+.||+|||+.
T Consensus 267 ~~l~~~~~~~~~g~l~dr~g~~~~ 290 (408)
T PRK09874 267 PGVAALLSAPRLGKLGDRIGPEKI 290 (408)
T ss_pred HHHHHHHHHHHHHHHHhccccchh
Confidence 34566666777 889999999863
No 178
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=34.59 E-value=1.9e+02 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=15.0
Q ss_pred HHHHHHHHHHH-HHHHHHhcCC
Q psy1726 114 TTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 114 ~~l~eipG~il-~llidriGRK 134 (137)
..++..++.++ ..+.||.||+
T Consensus 48 ~~~~~~~~~~~~g~l~d~~~~~ 69 (382)
T TIGR00902 48 ALIARFAGGLFFAPLIKDANHI 69 (382)
T ss_pred HHHHHHHHHHHHHHHHHhcCcH
Confidence 34555566666 8899999974
No 179
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.38 E-value=88 Score=22.74 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=18.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHH--HHHHHHhcCC
Q psy1726 103 LNTQDYMDLLWTTLAEFPGNYY--VFIRNRATYI 134 (137)
Q Consensus 103 l~~~~y~~~~i~~l~eipG~il--~llidriGRK 134 (137)
++.......++..++++.|.|+ .|++.|.-+|
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555566666677777776 6666665554
No 180
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=34.32 E-value=43 Score=28.00 Aligned_cols=24 Identities=0% Similarity=-0.109 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCCCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK~~ 136 (137)
...++.+++.++ +.+.||+|||..
T Consensus 84 ~~~~~~~~~~~~~g~l~dr~g~r~~ 108 (465)
T TIGR00894 84 SHFYGQIIIQIPVGYLAGKYVFKWS 108 (465)
T ss_pred HHHHHHHHHHcchHHHHHHhCcchh
Confidence 345678888888 999999999974
No 181
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=30.84 E-value=2.6e+02 Score=23.31 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=16.8
Q ss_pred HHHHHHHHH-HHHHHHhcCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~ 135 (137)
.+...|.++ .++.||+++|+
T Consensus 280 ~~~~vGR~~~~~l~~r~~~~~ 300 (410)
T TIGR00885 280 VIFFISRFIGTWLISYLAAHK 300 (410)
T ss_pred HHHHHHHHHHHHHHHHcCHHH
Confidence 556789999 99999998874
No 182
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=30.70 E-value=59 Score=26.62 Aligned_cols=18 Identities=17% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHH-HHHHHHhcCCCC
Q psy1726 119 FPGNYY-VFIRNRATYISQ 136 (137)
Q Consensus 119 ipG~il-~llidriGRK~~ 136 (137)
+.|.++ +++.-.+|||++
T Consensus 281 La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 281 LAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHhheeEeccc
Confidence 345555 788888999986
No 183
>KOG2504|consensus
Probab=29.62 E-value=1.6e+02 Score=25.95 Aligned_cols=62 Identities=5% Similarity=0.035 Sum_probs=41.7
Q ss_pred HHHHHH-H-HHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHHH
Q psy1726 46 KAVFLF-H-RTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNY 123 (137)
Q Consensus 46 ~Tl~l~-i-wf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~i 123 (137)
++.+++ + +....++|+-..+.+|......+. ...+......+.+++.+.|.+
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~--------------------------~~~~aa~l~Siigi~~i~gRi 351 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL--------------------------SSNDAAFLLSIIGVSDIIGRI 351 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------------------ChhhhHHHHHHHHHhhhhhhh
Confidence 455555 4 445677888888888987653322 122334455567899999999
Q ss_pred H-HHHHHHhcC
Q psy1726 124 Y-VFIRNRATY 133 (137)
Q Consensus 124 l-~llidriGR 133 (137)
+ +++.|+...
T Consensus 352 ~~G~laD~~~~ 362 (509)
T KOG2504|consen 352 ILGLLADKPGI 362 (509)
T ss_pred hhhhhcCcccc
Confidence 9 999998763
No 184
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=29.41 E-value=1.8e+02 Score=19.54 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=17.4
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhh
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEA 73 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~ 73 (137)
..+.+. +-+...++|-.+.-+.|+++..
T Consensus 17 ~~~~l~~i~l~~y~~~~ll~a~~p~~m~~ 45 (91)
T PF04341_consen 17 LAWPLSAIFLVLYFGFVLLSAFAPELMAT 45 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHcC
Confidence 333344 5556666666666788988753
No 185
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=28.23 E-value=2e+02 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=21.8
Q ss_pred chhHHHHHHHHH-HHHhhhHHHHHHHH-hHHHHhhh
Q psy1726 40 YPSRINKAVFLF-HRTVCAFCYYGVVL-MTTELFEA 73 (137)
Q Consensus 40 ~~~~r~~Tl~l~-iwf~~~~~YyGl~l-w~P~L~~~ 73 (137)
+..|+.+.++.| +|.+.+.+-|..+. +...|.+.
T Consensus 241 ~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~ 276 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDT 276 (412)
T ss_pred HHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 345677889999 88887766555554 44444443
No 186
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=27.00 E-value=3.9e+02 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 112 LWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 112 ~i~~l~eipG~il-~llidriGRK~ 135 (137)
.+..++|+|-.++ ..+..|+|-|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ 274 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKW 274 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4677899999988 99999988653
No 187
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=25.81 E-value=3.6e+02 Score=21.89 Aligned_cols=24 Identities=0% Similarity=-0.249 Sum_probs=14.4
Q ss_pred HHHhhhHHHHHHHHhHHHHhhhcc
Q psy1726 52 HRTVCAFCYYGVVLMTTELFEASD 75 (137)
Q Consensus 52 iwf~~~~~YyGl~lw~P~L~~~~~ 75 (137)
..+...+.+.=..--+|.+++..+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g 30 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEG 30 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcC
Confidence 345555555555666787776544
No 188
>COG1470 Predicted membrane protein [Function unknown]
Probab=25.42 E-value=66 Score=28.85 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHH--HHHHHHhcCC
Q psy1726 114 TTLAEFPGNYY--VFIRNRATYI 134 (137)
Q Consensus 114 ~~l~eipG~il--~llidriGRK 134 (137)
.+++-+.+.++ +++|.|+|||
T Consensus 491 iGI~Ii~~~v~~L~fviRK~GRR 513 (513)
T COG1470 491 IGIAIIVLVVLGLIFVIRKFGRR 513 (513)
T ss_pred hhHHHHHHHHHHHHhhhHHhcCC
Confidence 34444444455 8899999998
No 189
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=25.25 E-value=3.2e+02 Score=24.02 Aligned_cols=25 Identities=4% Similarity=-0.263 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcC-CC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATY-IS 135 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGR-K~ 135 (137)
.++.++......++ -.+.+++|+ |.
T Consensus 311 l~~~s~~~~i~s~~l~~l~~~~g~~k~ 337 (477)
T TIGR01301 311 LMLNSVVLGITSIGMEKLCRGWGAGKR 337 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 34444444454455 777888884 53
No 190
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=24.23 E-value=3.1e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHH-HHHhhhHHHHHHHHhHHHHhhhc
Q psy1726 46 KAVFLF-HRTVCAFCYYGVVLMTTELFEAS 74 (137)
Q Consensus 46 ~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~ 74 (137)
...++. +-+.=-|+|||+.-.+--.+..+
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~ 51 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQ 51 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 334455 67778899999988777666553
No 191
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=24.23 E-value=2.7e+02 Score=26.35 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcC
Q psy1726 111 LLWTTLAEFPGNYY-VFIRNRATY 133 (137)
Q Consensus 111 ~~i~~l~eipG~il-~llidriGR 133 (137)
....+++.+.|.++ ..+.++.++
T Consensus 267 ~~~~~~g~~ig~~~~g~l~~~~~~ 290 (1140)
T PRK06814 267 LAVFSVGVAVGSFLASKLSEGRIT 290 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcee
Confidence 34556777788888 777765544
No 192
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=23.97 E-value=1.4e+02 Score=26.45 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 107 DYMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 107 ~y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
.++..+....+.+.+.++ ..+..|+|+|.
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~ 303 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKK 303 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchHH
Confidence 355666677777777888 99999999985
No 193
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=23.14 E-value=1.7e+02 Score=21.32 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHH--HHHHHHhcC
Q psy1726 104 NTQDYMDLLWTTLAEFPGNYY--VFIRNRATY 133 (137)
Q Consensus 104 ~~~~y~~~~i~~l~eipG~il--~llidriGR 133 (137)
....++..+..++..+.+.|+ +|++.|+|.
T Consensus 13 ~~~~~l~qv~~~L~lVl~lI~~~aWLlkR~~~ 44 (124)
T PRK11486 13 VSGSPLLQVSGALIGIIALILAAAWLVKRLGF 44 (124)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444567777888889988888 899999874
No 194
>KOG3574|consensus
Probab=21.95 E-value=1.8e+02 Score=25.97 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHH-HHHhhhHHHHHHHHhHHHHhhhccCccCCCccccccCCCCCCCccccccccCChhhHHHHHHHHHHHHHHH
Q psy1726 44 INKAVFLF-HRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGN 122 (137)
Q Consensus 44 r~~Tl~l~-iwf~~~~~YyGl~lw~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~l~~~~y~~~~i~~l~eipG~ 122 (137)
|+..+++. .......- +|+.--.|-++...+. .|....+.+++.-|-.
T Consensus 30 ~~~illLl~LYllQGiP-~GL~~~iP~lL~ak~v------------------------------Syt~~a~fS~ay~P~s 78 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIP-LGLIGAIPLLLQAKGV------------------------------SYTSQAIFSFAYWPFS 78 (510)
T ss_pred hhhHHHHHHHHHHcCCc-hhHhhhhHHHhcCCCc------------------------------chhhhhhhhhhhhHHH
Confidence 33333333 44444433 5888888988763321 1555566677777744
Q ss_pred --HH-HHHHH-----HhcCCCC
Q psy1726 123 --YY-VFIRN-----RATYISQ 136 (137)
Q Consensus 123 --il-~llid-----riGRK~~ 136 (137)
++ ..++| |+|||++
T Consensus 79 LKllWaPiVDs~y~k~~Grrks 100 (510)
T KOG3574|consen 79 LKLLWAPIVDSVYSKRFGRRKS 100 (510)
T ss_pred HHHHHHhhhHHHHHHhhccccc
Confidence 44 88999 9999986
No 195
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=20.90 E-value=2.3e+02 Score=25.00 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=14.3
Q ss_pred HHHHHHHHH-HHHHHHhcCCC
Q psy1726 116 LAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il-~llidriGRK~ 135 (137)
.+.+.+.+- .++++|+|+|.
T Consensus 59 ~gYf~~~lpa~~~~kk~gyk~ 79 (422)
T COG0738 59 GGYFIMSLPAGLLIKKLGYKA 79 (422)
T ss_pred HHHHHHhccHHHHHHHhhhHH
Confidence 445555555 88999999985
No 196
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=20.79 E-value=1.1e+02 Score=26.09 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q psy1726 116 LAEFPGNYYVFIRNRATYIS 135 (137)
Q Consensus 116 l~eipG~il~llidriGRK~ 135 (137)
.+.+.|.+++.+.||+|||+
T Consensus 81 Ss~i~g~~~G~laD~~Grk~ 100 (354)
T PF05631_consen 81 SSAIFGTFVGSLADRYGRKK 100 (354)
T ss_pred HHHHHHHHHHHHHHhcCchH
Confidence 34455666699999999996
No 197
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=20.33 E-value=1.2e+02 Score=23.97 Aligned_cols=32 Identities=31% Similarity=0.569 Sum_probs=21.4
Q ss_pred hhhhccccccchhHHHHHHH---HH-HHHhhhHHHH
Q psy1726 30 VKGLFTTFQSYPSRINKAVF---LF-HRTVCAFCYY 61 (137)
Q Consensus 30 i~~LF~~~~~~~~~r~~Tl~---l~-iwf~~~~~Yy 61 (137)
+..||-++|.+|+|...-.+ +| .|-...+++|
T Consensus 48 IlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfiicfY 83 (200)
T PF05640_consen 48 ILGLFGAIQYRPRYIIVYAVWTALWVTWNVFIICFY 83 (200)
T ss_pred HHHHhhheeecchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45689999999998876554 44 4544555555
No 198
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=20.27 E-value=4.5e+02 Score=23.25 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHH-HHHHHHhcCC
Q psy1726 113 WTTLAEFPGNYY-VFIRNRATYI 134 (137)
Q Consensus 113 i~~l~eipG~il-~llidriGRK 134 (137)
..+++.+.|.++ ..+.+|++++
T Consensus 262 ~~gvGai~Gal~~~~l~~~~~~~ 284 (524)
T PF05977_consen 262 AFGVGAILGALLLPRLRRRLSSR 284 (524)
T ss_pred HHHHHHHHHHHHHHHhhcccCcc
Confidence 456666777766 6666665544
No 199
>TIGR02979 phageshock_pspD phage shock protein PspD. Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=20.24 E-value=91 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.005 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1726 110 DLLWTTLAEFPGNYYVFIRNRATYIS 135 (137)
Q Consensus 110 ~~~i~~l~eipG~il~llidriGRK~ 135 (137)
..+++++-.=|+.+.++++..+.|||
T Consensus 10 ~i~~~Al~YGPAG~aGw~vKsVsrkP 35 (59)
T TIGR02979 10 LVLLTALRYGPAGVAGWAMKSVARRP 35 (59)
T ss_pred HHHHHHHHhCchhHHHHHHHHHhhcc
Confidence 35677788888887799999999997
No 200
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=20.13 E-value=4.6e+02 Score=23.03 Aligned_cols=30 Identities=13% Similarity=-0.094 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHhcCCC
Q psy1726 106 QDYMDLLWTTLAEFPGNYY-VFIRNRATYIS 135 (137)
Q Consensus 106 ~~y~~~~i~~l~eipG~il-~llidriGRK~ 135 (137)
+.++...+-.+...+.-+. .++.||+|.|.
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfGgR~ 80 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFGGRK 80 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccCchH
Confidence 3455555566666666667 99999999875
Done!