RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1726
         (137 letters)



>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein.  [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 505

 Score = 31.5 bits (72), Expect = 0.12
 Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 33/72 (45%)

Query: 56  CAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTT 115
            AF YYG+VL    L                                     Y+DL  + 
Sbjct: 339 TAFSYYGLVLDLGNLGGN---------------------------------IYLDLFISG 365

Query: 116 LAEFPGNYYVFI 127
           L E P      +
Sbjct: 366 LVELPAKLITLL 377


>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
           [Energy production and conversion].
          Length = 772

 Score = 30.9 bits (70), Expect = 0.20
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 70  LFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRN 129
           L  A++T   E+    A    +P DT     RQ+    Y++L    L E P ++++F+R 
Sbjct: 679 LLVAAETW-EEAIPMMAKLCIRPNDTPQG--RQIKLTHYIELYKKYLGELPPDWWLFVRT 735

Query: 130 RA 131
            A
Sbjct: 736 EA 737


>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 29.8 bits (67), Expect = 0.48
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 115 TLAEFPGNYYVFIRNRATYISQ 136
           +L E+ GNY  F   RAT ++Q
Sbjct: 223 SLFEYTGNYSSFEVQRATRLAQ 244


>gnl|CDD|238897 cd01916, ACS_1, Acetyl-CoA synthase (ACS), also known as acetyl-CoA
           decarbonylase, is found in acetogenic and methanogenic
           organisms and is responsible for the synthesis and
           breakdown of acetyl-CoA.  ACS forms a heterotetramer
           with carbon monoxide dehydrogenase (CODH) consisting of
           two ACS and two CODH subunits. CODH reduces carbon
           dioxide to carbon monoxide and ACS then synthesizes
           acetyl-CoA from carbon monoxide, CoA, and a methyl group
           donated by another protein (CoFeSP).  ACS has three
           structural domains, an N-terminal rossman fold domain
           with a helical region at its N-terminus which interacts
           with CODH, and two alpha + beta fold domains.  A Ni-Fe-S
           center referred to as the A-cluster is located in the
           C-terminal domain. A large cavity exists between the
           three domains which may bind CoA.
          Length = 731

 Score = 27.4 bits (61), Expect = 2.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 90  FKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGNYYVFIRNRA 131
            +P DT     RQ+    Y+DL    L   P ++++F+R  A
Sbjct: 664 IRPSDT--PQGRQIKLTHYIDLHKKYLGTLPPDWHLFVRTEA 703


>gnl|CDD|132518 TIGR03478, DMSO_red_II_bet, DMSO reductase family type II enzyme,
           iron-sulfur subunit.  This model represents the
           iron-sulfur subunit, typically called the beta subunit,
           of various proteins that also contain a molybdopterin
           subunit and a heme b subunit. The group includes two
           distinct but very closely related periplasmic proteins
           of anaerobic respiration, selenate reductase and
           chlorate reductase. Other members of this family include
           dimethyl sulphide dehydrogenase and ethylbenzene
           dehydrogenase [Energy metabolism, Anaerobic, Energy
           metabolism, Electron transport].
          Length = 321

 Score = 25.9 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 95  TCTADCRQLNT----QDYMDLLWTTLAEFPGNYY 124
           TCT  C+ L T    ++YM   W  +  +PG  Y
Sbjct: 18  TCTVACKNLWTNRPGREYM--YWNNVETYPGKGY 49


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,582,130
Number of extensions: 534362
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 13
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)