RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1726
         (137 letters)



>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein
          structural and functiona analyses; 1.70A
          {Methanocaldococcus jannaschii} PDB: 2eky_A
          Length = 100

 Score = 26.6 bits (59), Expect = 1.6
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFC 59
          S+YV  A  + +   L      + T  +     I KA    H TV    
Sbjct: 23 SKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEAHSTVLNDV 71


>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge
          region; hypothetical protein, HTB2-NTH2 intergenic
          region; 1.80A {Saccharomyces cerevisiae} SCOP:
          d.58.48.1
          Length = 104

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTV 55
          S +V      IR+  L + +    TT +     +   +   H   
Sbjct: 23 SDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYG 67


>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein
          structure initiative, midwest center for structural
          genomics, MCSG; 1.70A {Bacillus cereus atcc 14579}
          SCOP: d.58.48.1
          Length = 109

 Score = 26.2 bits (58), Expect = 2.5
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAV 48
             V  A  +++  G+   V  + TT +     +   V
Sbjct: 24 YSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVV 61


>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
           dehydrogenase/reductase, oxidoreductase, 2-ENOY
           thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
          Length = 357

 Score = 25.7 bits (57), Expect = 6.0
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 1   MDSHSAATLPSRYVTSAHNMIRDLG 25
           +   SAATL     T A+ M+ D  
Sbjct: 140 IPLQSAATLGVNPCT-AYRMLMDFE 163


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 30/124 (24%)

Query: 1   MDSHSAATLPSRYVTSAHNMIR-DLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFC 59
           MD++S     +R +T +H  +   L + T     F       S++ +    F++ +    
Sbjct: 1   MDAYS-----TRPLTLSHGSLEHVLLVPTA---SF----FIASQLQEQ---FNKILPE-- 43

Query: 60  YYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEF 119
                   TE F A D   + + +      F  +   ++         +  +L   L EF
Sbjct: 44  -------PTEGFAADDEPTTPAELVGK---F--LGYVSSLVEPSKVGQFDQVLNLCLTEF 91

Query: 120 PGNY 123
              Y
Sbjct: 92  ENCY 95


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,980,296
Number of extensions: 99704
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 11
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)