RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1726
         (137 letters)



>d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 93

 Score = 26.2 bits (58), Expect = 0.81
 Identities = 10/49 (20%), Positives = 14/49 (28%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFC 59
             +  A   I   G+   V    TT +     I   V    R +  F 
Sbjct: 19 HEVIDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVKELARYLEQFA 67


>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus
          cereus [TaxId: 1396]}
          Length = 101

 Score = 25.4 bits (56), Expect = 1.5
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 10 PSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAV 48
              V  A  +++  G+   V  + TT +     +   V
Sbjct: 20 VYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVV 58


>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 99

 Score = 24.6 bits (54), Expect = 2.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQ 38
          S YV +A   ++ L +   + G+ T  +
Sbjct: 19 SSYVAAAVEALKKLNVRYEISGMGTLLE 46


>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 152

 Score = 24.8 bits (53), Expect = 3.7
 Identities = 4/25 (16%), Positives = 6/25 (24%)

Query: 3   SHSAATLPSRYVTSAHNMIRDLGLS 27
              A  +    +  A   I    L 
Sbjct: 120 ERIAQEISLAELPQALKRILRGELR 144


>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 24.3 bits (53), Expect = 4.3
 Identities = 8/45 (17%), Positives = 15/45 (33%)

Query: 11 SRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTV 55
          S +V      IR+  L + +    TT +     +   +   H   
Sbjct: 23 SDFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYG 67


>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 174

 Score = 23.8 bits (50), Expect = 7.9
 Identities = 7/61 (11%), Positives = 14/61 (22%)

Query: 1  MDSHSAATLPSRYVTSAHNMIRDLGLSTGVKGLFTTFQSYPSRINKAVFLFHRTVCAFCY 60
          +D    A +   Y T+   +I    +  G   L              +   +        
Sbjct: 1  LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA 60

Query: 61 Y 61
           
Sbjct: 61 G 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,221
Number of extensions: 19061
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.3 bits)