Query psy17260
Match_columns 679
No_of_seqs 283 out of 855
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:27:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 2.4E-98 8E-103 879.9 45.8 492 175-678 3-596 (769)
2 1m2o_A SEC23, protein transpor 100.0 4.8E-97 2E-101 869.5 44.3 480 186-678 5-598 (768)
3 3eh1_A Protein transport prote 100.0 5.9E-91 2E-95 813.1 41.5 440 181-678 31-572 (751)
4 3eh2_A Protein transport prote 100.0 2.3E-90 8E-95 810.4 33.6 472 147-678 1-591 (766)
5 3efo_B SEC24 related gene fami 100.0 2.3E-90 7.7E-95 811.0 31.0 474 145-678 3-595 (770)
6 1pcx_A Protein transport prote 100.0 1E-87 3.4E-92 793.0 39.1 451 175-677 48-608 (810)
7 1m2v_B SEC24, protein transpor 100.0 3.6E-88 1.2E-92 800.9 35.0 450 176-677 165-724 (926)
8 2yrc_A Protein transport prote 99.6 1.2E-16 4.2E-21 126.4 1.6 54 230-283 5-58 (59)
9 1m2o_A SEC23, protein transpor 99.5 1.7E-15 5.8E-20 178.2 -1.5 164 4-176 107-278 (768)
10 2nut_A Protein transport prote 99.4 4E-15 1.4E-19 174.9 -3.6 161 5-175 119-283 (769)
11 1m2v_B SEC24, protein transpor 97.9 1.5E-06 5.1E-11 103.7 -0.7 48 123-173 390-437 (926)
12 1pcx_A Protein transport prote 97.8 2.7E-06 9.3E-11 100.5 -1.1 48 123-173 274-321 (810)
13 3eh1_A Protein transport prote 97.1 0.00011 3.8E-09 86.1 1.0 48 123-173 239-286 (751)
14 4fx5_A VON willebrand factor t 97.0 0.4 1.4E-05 52.9 28.9 49 304-352 77-129 (464)
15 3eh2_A Protein transport prote 96.3 0.0012 3.9E-08 77.7 2.0 47 123-174 257-303 (766)
16 1q0p_A Complement factor B; VO 95.2 0.15 5.2E-06 49.4 12.0 50 302-351 13-67 (223)
17 4b4t_W RPN10, 26S proteasome r 94.7 0.17 5.7E-06 51.9 11.1 133 306-506 5-153 (268)
18 2odp_A Complement C2; C3/C5 co 94.4 0.1 3.4E-06 57.9 9.3 49 303-351 8-61 (509)
19 3zqk_A VON willebrand factor; 94.4 0.082 2.8E-06 51.1 7.6 49 303-351 20-73 (199)
20 3efo_B SEC24 related gene fami 94.3 0.013 4.4E-07 68.9 1.9 47 123-174 261-307 (770)
21 1v7p_C Integrin alpha-2; snake 94.1 0.08 2.8E-06 51.0 6.9 48 304-351 6-56 (200)
22 1mjn_A Integrin alpha-L; rossm 94.1 0.088 3E-06 49.9 7.0 48 304-351 2-52 (179)
23 3ibs_A Conserved hypothetical 94.0 0.11 3.8E-06 50.4 7.8 49 302-351 9-64 (218)
24 1pt6_A Integrin alpha-1; cell 93.8 0.11 3.7E-06 50.6 7.1 48 304-351 7-57 (213)
25 1ijb_A VON willebrand factor; 93.8 0.11 3.9E-06 50.1 7.2 48 304-351 13-65 (202)
26 2xgg_A Microneme protein 2; A/ 93.6 0.12 4.3E-06 48.7 7.1 48 304-351 17-69 (178)
27 2b2x_A Integrin alpha-1; compu 93.6 0.11 3.7E-06 51.0 6.8 48 304-351 22-72 (223)
28 1mf7_A Integrin alpha M; cell 93.4 0.12 4E-06 49.4 6.5 49 303-351 4-55 (194)
29 1rrk_A Complement factor B; BB 93.3 0.23 7.8E-06 54.7 9.6 47 305-351 2-53 (497)
30 1atz_A VON willebrand factor; 93.2 0.16 5.3E-06 48.4 7.2 48 304-351 5-57 (189)
31 1n3y_A Integrin alpha-X; alpha 93.2 0.18 6.1E-06 48.1 7.4 49 303-351 8-59 (198)
32 3rag_A Uncharacterized protein 91.8 0.18 6.1E-06 50.8 5.6 46 303-348 133-182 (242)
33 4hqf_A Thrombospondin-related 91.7 0.23 7.8E-06 50.7 6.4 49 303-351 20-74 (281)
34 4hqo_A Sporozoite surface prot 91.2 0.29 9.9E-06 49.6 6.6 48 304-351 18-71 (266)
35 2x5n_A SPRPN10, 26S proteasome 91.1 0.32 1.1E-05 47.1 6.4 125 306-499 4-144 (192)
36 3hrz_D Complement factor B; se 90.8 0.51 1.8E-05 54.7 9.0 49 303-351 242-295 (741)
37 2x31_A Magnesium-chelatase 60 90.6 0.2 6.8E-06 47.5 4.4 45 303-347 4-51 (189)
38 3n2n_F Anthrax toxin receptor 89.8 0.6 2.1E-05 43.7 7.0 48 304-351 7-56 (185)
39 1shu_X Anthrax toxin receptor 86.2 1.2 4E-05 41.5 6.5 48 304-351 6-55 (182)
40 3k6s_A Integrin alpha-X; cell 76.1 3.8 0.00013 50.0 7.4 49 304-352 130-181 (1095)
41 2j9u_B VPS36, vacuolar protein 71.9 0.8 2.8E-05 37.3 0.1 21 256-276 15-35 (76)
42 2ww8_A RRGA, cell WALL surface 69.5 3.6 0.00012 49.0 4.9 49 302-350 222-280 (893)
43 2iue_A Pactolus I-domain; memb 69.1 4.8 0.00016 39.6 4.9 45 304-348 3-51 (212)
44 1jey_B KU80; double-strand DNA 62.8 9.6 0.00033 42.8 6.6 44 305-348 8-62 (565)
45 2a20_A Regulating synaptic mem 54.6 3.3 0.00011 32.1 0.5 25 236-266 35-59 (62)
46 3t3p_B Integrin beta-3; integr 49.2 22 0.00075 39.0 6.2 48 301-348 108-160 (472)
47 3v4v_B Integrin beta-7; cell a 45.5 28 0.00096 38.4 6.4 49 301-349 129-182 (503)
48 3vi3_B Integrin beta-1; beta p 43.4 41 0.0014 36.7 7.2 46 301-346 119-168 (454)
49 1jey_A KU70; double-strand DNA 39.7 35 0.0012 38.6 6.3 45 305-349 36-92 (609)
50 3k6s_B Integrin beta-2; cell r 38.8 22 0.00076 40.9 4.4 47 301-347 101-151 (687)
51 3fcs_B Integrin beta-3; beta p 36.6 22 0.00075 41.0 4.0 47 301-347 108-158 (690)
52 1yvr_A RO autoantigen, 60-kDa 34.2 15 0.00051 40.9 2.0 49 302-350 366-420 (538)
53 2gmg_A Hypothetical protein PF 31.4 12 0.00043 32.4 0.6 35 233-274 66-100 (105)
54 2lkt_A Retinoic acid receptor 29.9 23 0.00079 31.3 2.1 23 9-31 1-23 (125)
55 1pft_A TFIIB, PFTFIIBN; N-term 27.8 69 0.0023 23.4 4.1 29 234-267 5-33 (50)
56 2yww_A Aspartate carbamoyltran 26.9 38 0.0013 31.2 3.0 42 227-268 98-143 (149)
57 1pg5_B Aspartate carbamoyltran 26.9 46 0.0016 31.2 3.6 41 227-267 107-152 (168)
58 2nvo_A RO sixty-related protei 25.8 37 0.0013 37.8 3.3 52 302-353 360-419 (535)
59 1w7p_D VPS36P, YLR417W; ESCRT- 24.3 16 0.00055 41.0 0.0 20 256-275 115-134 (566)
60 2csz_A Synaptotagmin-like prot 24.2 27 0.00093 28.5 1.3 31 235-267 43-73 (76)
61 4gat_A Nitrogen regulatory pro 23.9 18 0.00063 28.7 0.3 32 233-267 8-39 (66)
62 1vq8_Z 50S ribosomal protein L 23.0 53 0.0018 27.2 2.9 29 235-269 28-56 (83)
63 2vut_I AREA, nitrogen regulato 22.7 19 0.00066 26.1 0.2 31 234-267 1-31 (43)
64 2be7_D Aspartate carbamoyltran 21.7 55 0.0019 30.3 3.0 41 227-267 98-143 (153)
65 2lk0_A RNA-binding protein 5; 20.9 24 0.00081 23.7 0.3 13 257-269 4-16 (32)
66 6rxn_A Rubredoxin; electron tr 20.5 23 0.00079 26.0 0.2 9 258-266 30-38 (46)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=2.4e-98 Score=879.94 Aligned_cols=492 Identities=59% Similarity=0.995 Sum_probs=428.5
Q ss_pred CCccchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCCCCCCccCCccccCCCCcccEEcCceeEec
Q psy17260 175 ISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDY 254 (679)
Q Consensus 175 ~p~~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~~ip~v~~~p~RC~~~~C~AYiNpf~~~~~ 254 (679)
.|+.+|...+++||+|+|||+|||+||.+++++++++||||++|+||++.+++|+++++|+||++++|+|||||||+|++
T Consensus 3 ~~~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~ 82 (769)
T 2nut_A 3 MGMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDY 82 (769)
T ss_dssp ----CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEET
T ss_pred CcccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeC
Confidence 45677888899999999999999999999999999999999999999988889999999999987679999999999999
Q ss_pred CCCeEEeccCCCCCCCCcccccccCCCCCCcccCCCcceEEecCCCCCCCcEEEEEEECCcChhhHHHHHHHHHHHhhcC
Q psy17260 255 KSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLL 334 (679)
Q Consensus 255 ~g~~W~C~~C~~~N~vp~~Y~~~~~~~~rpEL~~~~~tvEy~~~~~~~~pp~~vFvIDvs~~a~~l~~l~~si~~~L~~L 334 (679)
+|++|+||||++.|++|++|+.+++.++||||.++++||||++|++.+.||+|+||||+|.+++++++++++|+++|+.|
T Consensus 83 ~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~L 162 (769)
T 2nut_A 83 RAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLL 162 (769)
T ss_dssp TTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCCCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCCCCCEEEEEEECCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999977777889999656899999999888999999999999999999999999999999999
Q ss_pred CCCcEEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCC---------CCCCCCCCCCCCCCCCCCCC
Q psy17260 335 PKNALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKY---------SMSAPAPAPRPGQPPRPART 405 (679)
Q Consensus 335 p~~~~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~---------~~p~~~g~~~~~~~~~~~~~ 405 (679)
|++++|||||||++||||+++...+++++||+|+|+++.+|+..|++++|. .++| +.+.+
T Consensus 163 p~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f-----------~~p~~ 231 (769)
T 2nut_A 163 PPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQ-----------PPPSN 231 (769)
T ss_dssp CTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC------------------------------CCC
T ss_pred CCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccC-----------CCccc
Confidence 999999999999999999999999999999999999998888778877641 2232 11237
Q ss_pred CceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhh----cc------------------------
Q psy17260 406 QFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEG----TL------------------------ 457 (679)
Q Consensus 406 ~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~----~~------------------------ 457 (679)
+||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|+. .|
T Consensus 232 ~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~ 311 (769)
T 2nut_A 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELK 311 (769)
T ss_dssp SSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred ceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCcccc
Confidence 89999999999999999999999999999999999999999999999994 22
Q ss_pred --CCCCCccCcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCCc-----------------------cccc------
Q psy17260 458 --IRSHNDIHKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPPW-----------------------INGL------ 505 (679)
Q Consensus 458 --lrs~~di~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~s-----------------------F~~~------ 505 (679)
+|+|+|+++++++++ +++.+||++||.+|+ .+++||+|.++.+ |+.+
T Consensus 312 ~~~rs~~d~~ke~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l 390 (769)
T 2nut_A 312 TPIRSWHDIDKDNAKYV-KKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTF 390 (769)
T ss_dssp SCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHH
T ss_pred cccccccccccchhhhc-cchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHH
Confidence 345556667778999 999999999999999 9999998865532 3211
Q ss_pred -------------c---------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecC
Q psy17260 506 -------------L---------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQ 563 (679)
Q Consensus 506 -------------~---------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~ 563 (679)
+ ||+||+|+++|||+...+.+++++||+++|+++|++|+++++|+|+||+|+|++++.
T Consensus 391 ~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~ 470 (769)
T 2nut_A 391 QRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQ 470 (769)
T ss_dssp HHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC--
T ss_pred HHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCc
Confidence 1 999999999999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q psy17260 564 HGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWA 643 (679)
Q Consensus 564 ~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~l 643 (679)
++.+++++..+|||||++||+.+|+|||||||++++|++..+++.++|++||+||++++|||+|++++++++..|+++||
T Consensus 471 ~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~l 550 (769)
T 2nut_A 471 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWL 550 (769)
T ss_dssp --------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHH
T ss_pred cccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 76556667899999999999999999999999999986322123699999999999999999999999999999999999
Q ss_pred HHHHHHhhccc----------cccCCcccH-HHHHHHHhccccCCC
Q psy17260 644 DRTLIRLEGGA----------PVLTEDVSL-QVFMEHLKKLAVSST 678 (679)
Q Consensus 644 d~~li~il~~y----------liLPe~lkl-P~~~~~L~rS~~l~~ 678 (679)
|+++++++++| |+||++||+ |+|||+|+||++|+.
T Consensus 551 d~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~ 596 (769)
T 2nut_A 551 DRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQV 596 (769)
T ss_dssp HHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCC
T ss_pred HHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCC
Confidence 99999986654 999999999 999999999999974
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.8e-97 Score=869.51 Aligned_cols=480 Identities=38% Similarity=0.628 Sum_probs=425.9
Q ss_pred ccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCCCCCCccCCccccCCCCcccEEcCceeEecCCCeEEeccCC
Q psy17260 186 QNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCF 265 (679)
Q Consensus 186 ~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~~ip~v~~~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~ 265 (679)
.+|+++|||+|||+||.+++++++++||||++|+||++.+++|+++++|+||++++|+|||||||+|+++|++|+||||+
T Consensus 5 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 5 TNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred cccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 38999999999999999999999999999999999998778999999999998767999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCCCcccCCCcceEEecCCCCCCCcEEEEEEECCcChhhHHHHHHHHHHHhhcCCCCcEEEEEEE
Q psy17260 266 QRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITF 345 (679)
Q Consensus 266 ~~N~vp~~Y~~~~~~~~rpEL~~~~~tvEy~~~~~~~~pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp~~~~VG~ITf 345 (679)
+.|++|++|+.+++.++||||. ++||||++|.+++.||+|+||||+|+++++++.++++|+++|+.||++++||||||
T Consensus 85 ~~N~~P~~y~~~~~~~~~pEL~--~~tvEy~~p~~~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~VGlITf 162 (768)
T 1m2o_A 85 SRNHLPPQYTNLSQENMPLELQ--STTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITY 162 (768)
T ss_dssp CCCBCCGGGCC---CCCCGGGT--CSEEEEECSCCCCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred CCCCCChHHccCCcccCChhhc--cCCEEEECCCCCCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 9999999999766778899995 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCccceeeecCCCCCchhHHHHhh-hcCCC----------CCCCCCCCCCCCCCCCCCCCCceeehHHh
Q psy17260 346 GQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEML-RIGKY----------SMSAPAPAPRPGQPPRPARTQFLQPVEAC 414 (679)
Q Consensus 346 d~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l-~l~d~----------~~p~~~g~~~~~~~~~~~~~~flvpl~e~ 414 (679)
|+.||||+++...+++++||+|+|+++.+|+..|+ +++|. .++|. ..+.+.++||+|++||
T Consensus 163 ~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~--------p~~~~~~~~lv~l~e~ 234 (768)
T 1m2o_A 163 GNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNK--------VTPFSLNRFFLPLEQV 234 (768)
T ss_dssp SSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC-----------------------CCSSSGGGGSEEHHHH
T ss_pred CCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccc--------cccCCccceeeeHHHH
Confidence 99999999999889999999999999988888888 76553 22221 0112357899999999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhh----cc--------------------------CCCCCcc
Q psy17260 415 EMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEG----TL--------------------------IRSHNDI 464 (679)
Q Consensus 415 ~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~----~~--------------------------lrs~~di 464 (679)
++.|+++|++|++++|++++++++.||+|+||++|..+|+. .| +|+|+|+
T Consensus 235 ~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~ 314 (768)
T 1m2o_A 235 EFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDI 314 (768)
T ss_dssp HHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHH
T ss_pred HHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccccccccccccccc
Confidence 99999999999999999999999999999999999999994 33 3455566
Q ss_pred CcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCCc-----------------------ccc----------------
Q psy17260 465 HKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPPW-----------------------ING---------------- 504 (679)
Q Consensus 465 ~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~s-----------------------F~~---------------- 504 (679)
+|++++++ +++.+||++||.+|+ .+++||+|+++.+ |+.
T Consensus 315 ~k~~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~ 393 (768)
T 1m2o_A 315 DSDHAQHY-KKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEE 393 (768)
T ss_dssp HHTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTT
T ss_pred ccchhhhc-CchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccc
Confidence 66778899 999999999999999 9999998865533 221
Q ss_pred ---cc---------cCCCeEEeeeeccccccCC-CCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecCCCC-----
Q psy17260 505 ---LL---------LEYELCLMGAIGPCVSLNL-KNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGA----- 566 (679)
Q Consensus 505 ---~~---------~S~gl~v~~~iG~~~~~~~-~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~~~~----- 566 (679)
.+ ||+|++|++++||+...+. ++.++||+++|+|+|++|+++++++|+||+|+|++++.++.
T Consensus 394 ~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~~~~~~~~~ 473 (768)
T 1m2o_A 394 GYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMM 473 (768)
T ss_dssp SSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC--------
T ss_pred cccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccccccccccc
Confidence 11 9999999999999999877 88999999999999999999999999999999999988642
Q ss_pred --CCC--CCCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHH
Q psy17260 567 --PIP--QGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRW 642 (679)
Q Consensus 567 --~l~--~~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~ 642 (679)
+++ +...+|||||++||+.+|+|||||||++++|++ +++.++|++||+||++++|||+|++++++++..|+|+|
T Consensus 474 ~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~--~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~ 551 (768)
T 1m2o_A 474 SAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLP--FGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRW 551 (768)
T ss_dssp ---------CEEEEEEEEEEEETTTEEEEEEEEEEEEEEC--TTCHHHHHTBCHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred cccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccC--ccHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 233 568899999999999999999999999999862 23789999999999999999999999999999999999
Q ss_pred HHHHHHHhhc---cc-------cccCCcccH-HHHHHHHhccccCCC
Q psy17260 643 ADRTLIRLEG---GA-------PVLTEDVSL-QVFMEHLKKLAVSST 678 (679)
Q Consensus 643 ld~~li~il~---~y-------liLPe~lkl-P~~~~~L~rS~~l~~ 678 (679)
||++++++++ .| |+||++||+ |+|||+||||++|+.
T Consensus 552 l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~ 598 (768)
T 1m2o_A 552 LDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSV 598 (768)
T ss_dssp HHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCC
Confidence 9999999976 44 999999999 999999999999974
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=5.9e-91 Score=813.13 Aligned_cols=440 Identities=22% Similarity=0.343 Sum_probs=386.9
Q ss_pred hhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCCCCCCccCC-ccccCCCCcccEEcCceeEecCCCeE
Q psy17260 181 EEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYE-PLLCMRNQCRAILNPLCQVDYKSKLW 259 (679)
Q Consensus 181 ~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~~ip~v~~~-p~RC~~~~C~AYiNpf~~~~~~g~~W 259 (679)
+++++|||+|+|||+|||+||.+++++++++||||++|+||++.+++|+++++ |+||++ |||||||||+|. ++++|
T Consensus 31 ~~~~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~r--CrayiNPf~~f~-~~~~w 107 (751)
T 3eh1_A 31 ADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRS--CRTYINPFVSFI-DQRRW 107 (751)
T ss_dssp HHHHHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTT--TCCBCCTTCEES-SSSEE
T ss_pred ccccccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCCCCccCCCCCCcccC--ccCEeCCceEEe-cCCEE
Confidence 56789999999999999999999999999999999999999998889988774 899999 999999999995 47999
Q ss_pred EeccCCCCCCCCccccc------ccCCCCCCcccCCCcceEEecCC----CCCCCcEEEEEEECCcChhh---HHHHHHH
Q psy17260 260 VCNFCFQRNAFPPQYAA------ITEQHQPAELHPQFTTIEYTIPK----MQCAPLVFLFVVDTCMDEEE---LGALRDS 326 (679)
Q Consensus 260 ~C~~C~~~N~vp~~Y~~------~~~~~~rpEL~~~~~tvEy~~~~----~~~~pp~~vFvIDvs~~a~~---l~~l~~s 326 (679)
+||||+..|++|++|+. ..|.++||||. ++||||++|+ ++|+||+|+||||+|.++++ ++.++++
T Consensus 108 ~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~--~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~s 185 (751)
T 3eh1_A 108 KCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQ--NSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQS 185 (751)
T ss_dssp ECTTTCCEEECCGGGC---------CGGGSHHHH--CSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHH
T ss_pred EcccccCCCCCCHHHhcccccccccCcccCchhc--cceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHH
Confidence 99999999999999953 23678899996 8999999996 58899999999999999988 8899999
Q ss_pred HHHHhhcCCCCc--EEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCC
Q psy17260 327 LQMSLSLLPKNA--LVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPAR 404 (679)
Q Consensus 327 i~~~L~~Lp~~~--~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~p~~~g~~~~~~~~~~~~ 404 (679)
|+++|+.||+++ +|||||||++||||+++.+ ++++||+++.|++|.+.| ..
T Consensus 186 l~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~-------------~~~~qmlvv~dl~d~f~P--------------~~ 238 (751)
T 3eh1_A 186 LLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEG-------------LSQPQMLIVSDIDDVFLP--------------TP 238 (751)
T ss_dssp HHHHTTTSSCCTTCEEEEEEESSSEEEEECCTT-------------CSSCEEEEESCTTCTTSC--------------CG
T ss_pred HHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCC-------------cccceeeccccccccCCC--------------Ch
Confidence 999999999865 9999999999999999853 456775555555444433 24
Q ss_pred CCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhhcc-----------------CCCCCcc---
Q psy17260 405 TQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL-----------------IRSHNDI--- 464 (679)
Q Consensus 405 ~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~~~-----------------lrs~~di--- 464 (679)
++||+|++||++.|+++|++|+. ++++++++.+|+|+||++|..+|+..| +..+++-
T Consensus 239 ~~~lv~l~e~~~~i~~lL~~Lp~---~~~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 315 (751)
T 3eh1_A 239 DSLLVNLYESKELIKDLLNALPN---MFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPNQR 315 (751)
T ss_dssp GGTSEETTTTHHHHHHHHHHGGG---TSTTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCSCGG
T ss_pred hhhcccHHHHHHHHHHHHHhhhH---hhcCCCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccccccccccC
Confidence 68999999999999999999976 788999999999999999999999876 2222221
Q ss_pred -CcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCC-----------------------ccccc-------c------
Q psy17260 465 -HKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPP-----------------------WINGL-------L------ 506 (679)
Q Consensus 465 -~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~-----------------------sF~~~-------~------ 506 (679)
.+++++++ +++++||++||.+|+ .+++||+|+++. +|+.+ .
T Consensus 316 ~~~ke~~~~-~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~ 394 (751)
T 3eh1_A 316 SSTKVVQHL-GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLK 394 (751)
T ss_dssp GGSSSCTTC-SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHH
T ss_pred CCchhhhhh-cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHH
Confidence 12346788 999999999999999 999999886553 34421 1
Q ss_pred ----------------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecCCCCCCCC
Q psy17260 507 ----------------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQ 570 (679)
Q Consensus 507 ----------------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~~~~~l~~ 570 (679)
||+||+|++++||++..+ ++.|+++++++|++++|+|++++. +.+
T Consensus 395 r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~---------------t~~~~l~~i~~d~s~~v~~~~~~~----l~~ 455 (751)
T 3eh1_A 395 RYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRS---------------TDLLSLANINPDAGFAVQLSIEES----LTD 455 (751)
T ss_dssp HHHHSCCEEEEEEEEEECTTEEEEEEESSSEECS---------------SSEEEEEEECTTCCEEEEEEESSC----CCS
T ss_pred HHHhhhhccceEEEEEecCCeEEEEeeCCeEeCC---------------CCceEeccCCCCCEEEEEEEEcCC----CCC
Confidence 999999999999998554 789999999999999999988875 445
Q ss_pred CCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q psy17260 571 GGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL 650 (679)
Q Consensus 571 ~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~ld~~li~i 650 (679)
...+|||+|++||+.+|+|||||||++++++ +++.++|+++|+||++++|||+|++++++++..|+|+||+++++++
T Consensus 456 ~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt---~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~i 532 (751)
T 3eh1_A 456 TSLVCFQTALLYTSSKGERRIRVHTLCLPVV---SSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDS 532 (751)
T ss_dssp CSEEEEEEEEEEECTTSCEEEEEEEEEEEEE---CSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeeecCCCCEEEEEEEeccccc---CCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999975 6889999999999999999999999999999999999999999999
Q ss_pred hccc-----------cccCCcccH-HHHHHHHhccccCCC
Q psy17260 651 EGGA-----------PVLTEDVSL-QVFMEHLKKLAVSST 678 (679)
Q Consensus 651 l~~y-----------liLPe~lkl-P~~~~~L~rS~~l~~ 678 (679)
|++| |+||++||+ |+||++|+||++|+.
T Consensus 533 l~~Yr~~~~~~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~ 572 (751)
T 3eh1_A 533 LSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRT 572 (751)
T ss_dssp HHHHHTTCC-----CCEEEGGGTTHHHHHHHHHTSTTTCC
T ss_pred HHHHHHhcccCCCccccCcHHHHHHHHHHHHHHccHhhcC
Confidence 9999 999999999 999999999999874
No 4
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-90 Score=810.42 Aligned_cols=472 Identities=19% Similarity=0.243 Sum_probs=403.6
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhcccccCCc--cchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCC
Q psy17260 147 PWPVHQGKRALRSTGVALSIAVGLLELKISM--TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEK 224 (679)
Q Consensus 147 ~~~v~~~~R~~r~tg~al~va~~ll~~~~p~--~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~ 224 (679)
|+.|.+++|..|+++++ .|+..+..||+ |.|...|+|||+|+|||+|||+||.+++++++++||||++|+||++.
T Consensus 1 ~~~~~~~~~~~~~~~~f---~t~~~~~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~ 77 (766)
T 3eh2_A 1 PIQVIEDDRNNRGTEPF---VTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARL 77 (766)
T ss_dssp CTHHHHHHHHHHCCSEE---ETTSTTCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCC
T ss_pred CceehHhHHHhhCCCCc---ccCCCCCCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcC
Confidence 35566677777777765 56666677776 45678899999999999999999999999999999999999999976
Q ss_pred CC----CCCcc---CCccccCCCCcccEEcCceeEecCCCeEEeccCCCCCCCCcccccc-------cCCCCCCcccCCC
Q psy17260 225 PD----LPPLQ---YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAI-------TEQHQPAELHPQF 290 (679)
Q Consensus 225 ~~----ip~v~---~~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~N~vp~~Y~~~-------~~~~~rpEL~~~~ 290 (679)
++ +|+++ ++|+||++ |||||||||+|+++|++|+||||+..|++|++|++. .|.++||||. .
T Consensus 78 ~~~e~~~pvv~~~~~~pvRC~r--CrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~--~ 153 (766)
T 3eh2_A 78 PPEEASPYVVDHGESGPLRCNR--CKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELS--L 153 (766)
T ss_dssp CTTSCCCEEECCGGGCCCBCTT--TCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHH--C
T ss_pred cccCCCCCeecCCCCCCCccCC--CCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccc--c
Confidence 42 56664 47999999 999999999999999999999999999999999764 3567899997 6
Q ss_pred cceEEecCC------CCCCCcEEEEEEECCcChhh---HHHHHHHHHHHhhcCCCC-------cEEEEEEECCeEEEEEc
Q psy17260 291 TTIEYTIPK------MQCAPLVFLFVVDTCMDEEE---LGALRDSLQMSLSLLPKN-------ALVGLITFGQMVQVHEL 354 (679)
Q Consensus 291 ~tvEy~~~~------~~~~pp~~vFvIDvs~~a~~---l~~l~~si~~~L~~Lp~~-------~~VG~ITfd~~V~~y~l 354 (679)
++|||.+|. ++|+||+|+||||||.++++ ++.++++|+++|+.||++ ++|||||||++||||++
T Consensus 154 ~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l 233 (766)
T 3eh2_A 154 GSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNV 233 (766)
T ss_dssp SEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEEC
T ss_pred CceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEEC
Confidence 888888774 57899999999999999874 899999999999999975 89999999999999999
Q ss_pred CCCCccceeeecCCCCCchhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccC
Q psy17260 355 GCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQ 434 (679)
Q Consensus 355 ~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~p~~~g~~~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~ 434 (679)
++. ++++||+++.|++|.+.| ..++||+|++||++.|+++|++|++ ++.+
T Consensus 234 ~~~-------------~~~~q~~vv~dl~d~f~P--------------~~~~~lv~l~e~~~~i~~lL~~L~~---~~~~ 283 (766)
T 3eh2_A 234 KSS-------------LAQPQMMVVSDVADMFVP--------------LLDGFLVNVNESRAVITSLLDQIPE---MFAD 283 (766)
T ss_dssp CTT-------------CSSCEEEEECCTTTCCCC--------------CCTTSSBCTTTTHHHHHHHHHHHHH---HHTT
T ss_pred CCC-------------CCCceEEEecChhhhccc--------------cccceeEeHHHHHHHHHHHHHhhhh---hccC
Confidence 863 446775444444443333 3478999999999999999999998 6777
Q ss_pred CCCCCCchHHHHHHHHHHhhhc--c------CCCCCc---------------cC-cCCCCCCccchhHHHHHHHHHhh-h
Q psy17260 435 GREHCGPTGVAHVIAVGLLEGT--L------IRSHND---------------IH-KGNNKLPGRMATKITKGLALRAA-Y 489 (679)
Q Consensus 435 ~~~~~~c~G~AL~~A~~lL~~~--~------lrs~~d---------------i~-~~~~~~~~~~a~~fY~~La~~~~-~ 489 (679)
....++|+|+||++|..+|+.. | +.+.|. +. +++++++ +++.+||++||.+|+ .
T Consensus 284 ~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~-~~a~~fY~~la~~~~~~ 362 (766)
T 3eh2_A 284 TRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLF-QPQTGAYQTLAKECVAQ 362 (766)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGT-SCSSTHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhc-cchHHHHHHHHHHHHhC
Confidence 7778899999999999999853 2 122222 11 1234788 999999999999999 9
Q ss_pred cceeEEEEcCCc-----------------------ccccc--------------------------cCCCeEEeeeeccc
Q psy17260 490 CRAIEYLLVPPW-----------------------INGLL--------------------------LEYELCLMGAIGPC 520 (679)
Q Consensus 490 ~~svD~~~~~~s-----------------------F~~~~--------------------------~S~gl~v~~~iG~~ 520 (679)
+++||+|+++.+ |+.+. ||+|++|+++|||+
T Consensus 363 ~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~~ 442 (766)
T 3eh2_A 363 GCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAF 442 (766)
T ss_dssp TEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEESC
T ss_pred CeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECCe
Confidence 999999876644 32111 99999999999998
Q ss_pred cccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecCCCCCCCCCCceEEEEEEEeEcCCCCEEEEEEcccccc
Q psy17260 521 VSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNW 600 (679)
Q Consensus 521 ~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l~~ 600 (679)
... ++++|+++++++|+||+|+|+++++ +.+...+|||+|++||+.+|+|||||||++++|
T Consensus 443 ~~~---------------~t~~~~l~~i~~d~s~~v~f~~~~~----l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~v 503 (766)
T 3eh2_A 443 YMS---------------NTTDVELAGLDGDKTVTVEFKHDDR----LNEESGALLQCALLYTSCAGQRRLRIHNLALNC 503 (766)
T ss_dssp BCS---------------SSSCEEEEEEETTCCEEEEEEESSC----CCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred ecC---------------CCCceeeccCCCCceEEEEEEecCC----CCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEe
Confidence 744 3789999999999999999988765 555678999999999999999999999999997
Q ss_pred ccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhccc------------cccCCcccH-HHHH
Q psy17260 601 ADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLEGGA------------PVLTEDVSL-QVFM 667 (679)
Q Consensus 601 ~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~ld~~li~il~~y------------liLPe~lkl-P~~~ 667 (679)
+ +++.++|++||+||++++|||+|+.++++++..++|++|++.|++++..| |+||++||+ |+||
T Consensus 504 t---~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~ 580 (766)
T 3eh2_A 504 C---TQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYL 580 (766)
T ss_dssp E---SSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCGGGTTHHHHH
T ss_pred c---CCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccceecCHHHHHHHHHH
Confidence 6 57899999999999999999999999999999999999999999999988 799999999 9999
Q ss_pred HHHhccccCCC
Q psy17260 668 EHLKKLAVSST 678 (679)
Q Consensus 668 ~~L~rS~~l~~ 678 (679)
|+|+||++|+.
T Consensus 581 ~~L~Ks~~l~~ 591 (766)
T 3eh2_A 581 NCVLKSDVLQP 591 (766)
T ss_dssp HHHHTSTTTSC
T ss_pred HHHHccHhhcC
Confidence 99999999974
No 5
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=2.3e-90 Score=810.96 Aligned_cols=474 Identities=18% Similarity=0.253 Sum_probs=402.4
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhcccccCCc--cchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCC
Q psy17260 145 KDPWPVHQGKRALRSTGVALSIAVGLLELKISM--TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLK 222 (679)
Q Consensus 145 ~d~~~v~~~~R~~r~tg~al~va~~ll~~~~p~--~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~ 222 (679)
|.|+.|++++|..|...+. .|+..+..||+ +.|...|+|||+|+|||+|||+||++++++++++||||++|+||+
T Consensus 3 ps~~~~~~~~~~~~~~~~~---~t~~~~~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~ 79 (770)
T 3efo_B 3 GSPIQVIENDRASRGGQVY---ATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFA 79 (770)
T ss_dssp CCHHHHHHHHHHHHTTSEE---ETTSSSCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTC
T ss_pred CchHHHHHHHHHhcCCCCc---cCCCCCCCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCC
Confidence 4455666777776665444 34444556676 456789999999999999999999999999999999999999999
Q ss_pred CCCC----CCCcc---CCccccCCCCcccEEcCceeEecCCCeEEeccCCCCCCCCccccccc-------CCCCCCcccC
Q psy17260 223 EKPD----LPPLQ---YEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAIT-------EQHQPAELHP 288 (679)
Q Consensus 223 ~~~~----ip~v~---~~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~N~vp~~Y~~~~-------~~~~rpEL~~ 288 (679)
+.++ +|+++ ++|+||++ |||||||||+|+++|++|+||||+..|++|++|++.. |.++||||+
T Consensus 80 ~~~~~e~p~pvv~~~~~~pvRC~r--CrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~- 156 (770)
T 3efo_B 80 TIPSNESPLYLVNHGESGPVRCNR--CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELS- 156 (770)
T ss_dssp CCCTTSCCCCEECCTTTCSCBCTT--TCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHH-
T ss_pred CCCcccCCCCcccCCCCCCCccCC--CCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccc-
Confidence 7642 56664 57999999 9999999999999999999999999999999998642 456899997
Q ss_pred CCcceEEecCC------CCCCCcEEEEEEECCcChh---hHHHHHHHHHHHhhcCCCC-------cEEEEEEECCeEEEE
Q psy17260 289 QFTTIEYTIPK------MQCAPLVFLFVVDTCMDEE---ELGALRDSLQMSLSLLPKN-------ALVGLITFGQMVQVH 352 (679)
Q Consensus 289 ~~~tvEy~~~~------~~~~pp~~vFvIDvs~~a~---~l~~l~~si~~~L~~Lp~~-------~~VG~ITfd~~V~~y 352 (679)
.+||||++|. ++|+||+|+||||||.+++ .++.++++|+++|+.||++ ++|||||||++||||
T Consensus 157 -~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y 235 (770)
T 3efo_B 157 -LGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFF 235 (770)
T ss_dssp -CSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEE
T ss_pred -cCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEE
Confidence 6999999974 5889999999999999987 4899999999999999975 899999999999999
Q ss_pred EcCCCCccceeeecCCCCCchhHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcc
Q psy17260 353 ELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAV 432 (679)
Q Consensus 353 ~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~p~~~g~~~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~ 432 (679)
++++. +.++||+++.|++|.+.| ..++||+|++||++.|+++|++|+. ++
T Consensus 236 ~l~~~-------------~~q~q~~vv~d~~d~f~P--------------~~~~~Lv~l~e~~~~i~~lL~~L~~---~~ 285 (770)
T 3efo_B 236 NVKSN-------------LAQPQMMVVTDVGEVFVP--------------LLDGFLVNYQESQSVIHNLLDQIPD---MF 285 (770)
T ss_dssp ECCTT-------------CSSCEEEEECCTTSCCCC--------------CSSSSSBCTTTTHHHHHHHHHHHHH---HH
T ss_pred eCCCc-------------ccCceEEEecccccccCC--------------CccceeeeHHHHHHHHHHHHHhhHh---hc
Confidence 99863 456775444444443333 3478999999999999999999987 56
Q ss_pred cCCCCCCCchHHHHHHHHHHhhhc--c------CCCCCc---------------cC-cCCCCCCccchhHHHHHHHHHhh
Q psy17260 433 HQGREHCGPTGVAHVIAVGLLEGT--L------IRSHND---------------IH-KGNNKLPGRMATKITKGLALRAA 488 (679)
Q Consensus 433 ~~~~~~~~c~G~AL~~A~~lL~~~--~------lrs~~d---------------i~-~~~~~~~~~~a~~fY~~La~~~~ 488 (679)
+..+..++|+|+||++|..+|+.. | +.+.|. +. +++++++ +++++||++||.+|+
T Consensus 286 ~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~-~~a~~fY~~lA~~~~ 364 (770)
T 3efo_B 286 ADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILF-QPQTNVYDSLAKDCV 364 (770)
T ss_dssp HTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGG-SCSSSHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhh-cchHHHHHHHHHHHH
Confidence 767778899999999999999852 3 122222 11 1235788 999999999999999
Q ss_pred -hcceeEEEEcCCcc-----------------------cccc--------------------------cCCCeEEeeeec
Q psy17260 489 -YCRAIEYLLVPPWI-----------------------NGLL--------------------------LEYELCLMGAIG 518 (679)
Q Consensus 489 -~~~svD~~~~~~sF-----------------------~~~~--------------------------~S~gl~v~~~iG 518 (679)
.+++||+|+++.+| +.+. ||+|++|+++||
T Consensus 365 ~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G 444 (770)
T 3efo_B 365 AHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFG 444 (770)
T ss_dssp HTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEES
T ss_pred HcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeEC
Confidence 99999999766543 2110 999999999999
Q ss_pred cccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecCCCCCCCCCCceEEEEEEEeEcCCCCEEEEEEcccc
Q psy17260 519 PCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIAR 598 (679)
Q Consensus 519 ~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l 598 (679)
|+... ++++|+++++++|++|+|+|++++. +.++..+|||+|++||+.+|+|||||||+++
T Consensus 445 ~~~~~---------------~t~~~~l~~~~~d~s~~v~f~~~~~----l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l 505 (770)
T 3efo_B 445 GILMN---------------NTTDVEMAAIDCDKAVTVEFKHDDK----LSEDSGALIQCAVLYTTISGQRRLRIHNLGL 505 (770)
T ss_dssp SCBCS---------------SSSCEEEEEEESSCCEEEEEEESSC----CBTTTBEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CeeCC---------------CCCceEecccCcCceEEEEEEecCC----CCCCCcEEEEEEEEEEcCCCCEEEEEEEech
Confidence 98743 4789999999999999999988765 5556789999999999999999999999999
Q ss_pred ccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhccc------------cccCCcccH-HH
Q psy17260 599 NWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLEGGA------------PVLTEDVSL-QV 665 (679)
Q Consensus 599 ~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~ld~~li~il~~y------------liLPe~lkl-P~ 665 (679)
+|+ +++.++|+++|+||++++|+|+|+.++++++.+++|++|.+.|++++..| |+||++||+ |+
T Consensus 506 ~vt---~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp~~lkllP~ 582 (770)
T 3efo_B 506 NCS---SQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMKVLPV 582 (770)
T ss_dssp EEE---SCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEECGGGTTHHH
T ss_pred hhc---ccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCccceecCHHHHHHHH
Confidence 975 58899999999999999999999999999999999999999999999999 899999999 99
Q ss_pred HHHHHhccccCCC
Q psy17260 666 FMEHLKKLAVSST 678 (679)
Q Consensus 666 ~~~~L~rS~~l~~ 678 (679)
|||+|+||++|+.
T Consensus 583 ~~~~L~Ks~~l~~ 595 (770)
T 3efo_B 583 YMNCLLKNCVLLS 595 (770)
T ss_dssp HHHHHHHSGGGSC
T ss_pred HHHHHhCcHhhcC
Confidence 9999999999974
No 6
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1e-87 Score=793.05 Aligned_cols=451 Identities=17% Similarity=0.246 Sum_probs=378.4
Q ss_pred CCccchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCC----CCCCccCC-ccccCCCCcccEEcCc
Q psy17260 175 ISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP----DLPPLQYE-PLLCMRNQCRAILNPL 249 (679)
Q Consensus 175 ~p~~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~----~ip~v~~~-p~RC~~~~C~AYiNpf 249 (679)
||.+.+...++|||+|+|||+|||+||.+++++++++||||++|+||++.. .+|+++++ |+||++ |+||||||
T Consensus 48 ~~~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~--CrayiNPf 125 (810)
T 1pcx_A 48 PPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR--CRSYMNPF 125 (810)
T ss_dssp CGGGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTT--TCCBCCTT
T ss_pred CCCCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCC--ccCEecCc
Confidence 344677889999999999999999999999999999999999999999752 46777765 999999 99999999
Q ss_pred eeEecCCCeEEeccCCCCCCCCccccccc------CCCCCCcccCCCcceEEecCC----CCCCCcEEEEEEECCcChhh
Q psy17260 250 CQVDYKSKLWVCNFCFQRNAFPPQYAAIT------EQHQPAELHPQFTTIEYTIPK----MQCAPLVFLFVVDTCMDEEE 319 (679)
Q Consensus 250 ~~~~~~g~~W~C~~C~~~N~vp~~Y~~~~------~~~~rpEL~~~~~tvEy~~~~----~~~~pp~~vFvIDvs~~a~~ 319 (679)
|+|+++|++|+||||++.|++|++|+ +. |..+||||. ++||||++|+ +++.||+||||||+|.++++
T Consensus 126 ~~~~~~g~~W~C~~C~~~N~~P~~y~-~~~~~~~~d~~~RpEL~--~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~ 202 (810)
T 1pcx_A 126 VTFIEQGRRWRCNFCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIK 202 (810)
T ss_dssp CEEETTTTEEECTTTCCEEECCGGGG-C-----CCCGGGSHHHH--CSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHH
T ss_pred eEEeCCCCEEEccCCCCcCCCchhhc-cccccCccccccCcccc--CceEEEEcCchhccCCCCCcEEEEEEECChHHHh
Confidence 99999999999999999999999998 33 345679996 7999999995 56899999999999999876
Q ss_pred ---HHHHHHHHHHHhhcCCC---CcEEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCCCCCCCCCC
Q psy17260 320 ---LGALRDSLQMSLSLLPK---NALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPA 393 (679)
Q Consensus 320 ---l~~l~~si~~~L~~Lp~---~~~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~p~~~g~ 393 (679)
++.++++|+++|+.||+ +++|||||||+.||||+++... .|+|++ .+| ..|+++.|.++||+
T Consensus 203 ~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~-------~g~k~~-~~q-~~mlvv~dl~d~f~--- 270 (810)
T 1pcx_A 203 SGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEES-ADQ-INMMDIADLEEPFL--- 270 (810)
T ss_dssp HTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGG-------GC---------CEEECCCCTTCC-----
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccc-------cCcccc-ccc-hhhccccccccccC---
Confidence 77999999999999997 6999999999999999998642 365654 223 34666666655552
Q ss_pred CCCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhhcc----------------
Q psy17260 394 PRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL---------------- 457 (679)
Q Consensus 394 ~~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~~~---------------- 457 (679)
+..++||+|++||++.|+++|++|++ ++.+++++.+|+|+||++|..+|+..|
T Consensus 271 --------P~~~~~Lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG 339 (810)
T 1pcx_A 271 --------PRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIG 339 (810)
T ss_dssp -----------TTTSEETTTTHHHHHHHHHHHHH---HTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTT
T ss_pred --------CCcccccccHHHHHHHHHHHHHhhhh---hccCCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCC
Confidence 23478999999999999999999998 788899999999999999999999875
Q ss_pred -C-----CCCCccCcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCC-----------------------ccccc--
Q psy17260 458 -I-----RSHNDIHKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPP-----------------------WINGL-- 505 (679)
Q Consensus 458 -l-----rs~~di~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~-----------------------sF~~~-- 505 (679)
+ ++|.+++|++.+++ +++.+||++||.+|+ .+++||+|+++. +|+.+
T Consensus 340 ~l~~r~~~~~~~~~ke~~~l~-~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~ 418 (810)
T 1pcx_A 340 KLQRRNESGVVNTSKETAQLL-SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNP 418 (810)
T ss_dssp CCCC---------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSH
T ss_pred cccccccccccCcccchhhhc-ccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhh
Confidence 1 12334555555688 999999999999999 999999886543 33321
Q ss_pred ---------c-----------------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEE
Q psy17260 506 ---------L-----------------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFE 559 (679)
Q Consensus 506 ---------~-----------------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fe 559 (679)
+ ||+||+|++++||+..++ +++|+++++++|+||+|+|+
T Consensus 419 ~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~---------------~~~~~l~~~~~d~s~~v~f~ 483 (810)
T 1pcx_A 419 NDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS---------------SDLCAFSTMPRDQSYLFEVN 483 (810)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSS---------------SSEEEESSCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccccC---------------cCceEeecCCCCCEEEEEEE
Confidence 1 999999999999999754 56899999999999999999
Q ss_pred EecCCCCCCCCCCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHH
Q psy17260 560 IVNQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDV 639 (679)
Q Consensus 560 i~~~~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~ 639 (679)
+++. ++ ...+|||||++||+.+|+|||||||++++|+ +++.++|++||+||++++|||+|++++++++..|+
T Consensus 484 ~~~~----l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt---~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~d~ 555 (810)
T 1pcx_A 484 VDES----IM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTT---ESLAEVYASADQLAIASFYNSKAVEKALNSSLDDA 555 (810)
T ss_dssp ECSC----CC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEE---SCHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred eccC----CC-CCcEEEEEEEEEEcCCCCEEEEEEecCcccc---CCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 9875 33 4689999999999999999999999999976 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc--------------cccCCcccH-HHHHHHHhccccCC
Q psy17260 640 MRWADRTLIRLEGGA--------------PVLTEDVSL-QVFMEHLKKLAVSS 677 (679)
Q Consensus 640 ~~~ld~~li~il~~y--------------liLPe~lkl-P~~~~~L~rS~~l~ 677 (679)
|+||+++|+++++.| |+||++||+ |+|||+|+||++|+
T Consensus 556 r~~l~~~li~il~~Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~ 608 (810)
T 1pcx_A 556 RVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR 608 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC
Confidence 999999999999998 889999999 99999999999986
No 7
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=3.6e-88 Score=800.92 Aligned_cols=450 Identities=17% Similarity=0.250 Sum_probs=387.7
Q ss_pred CccchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCC----CCCCccCC-ccccCCCCcccEEcCce
Q psy17260 176 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKP----DLPPLQYE-PLLCMRNQCRAILNPLC 250 (679)
Q Consensus 176 p~~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~----~ip~v~~~-p~RC~~~~C~AYiNpf~ 250 (679)
|.+.|...++|||+|+|||+|||+||.+++++++++|||||+|+||++.. .+|+++++ |+||++ |+|||||||
T Consensus 165 ~~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~r--CrAYiNPf~ 242 (926)
T 1m2v_B 165 PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRR--CRSYMNPFV 242 (926)
T ss_dssp GGGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSS--SCCBCCTTC
T ss_pred CCcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCC--ccCEecCce
Confidence 34667889999999999999999999999999999999999999999752 46777765 999999 999999999
Q ss_pred eEecCCCeEEeccCCCCCCCCccccccc------CCCCCCcccCCCcceEEecCC----CCCCCcEEEEEEECCcChhh-
Q psy17260 251 QVDYKSKLWVCNFCFQRNAFPPQYAAIT------EQHQPAELHPQFTTIEYTIPK----MQCAPLVFLFVVDTCMDEEE- 319 (679)
Q Consensus 251 ~~~~~g~~W~C~~C~~~N~vp~~Y~~~~------~~~~rpEL~~~~~tvEy~~~~----~~~~pp~~vFvIDvs~~a~~- 319 (679)
+|+++|++|+||||++.|++|++|+ +. |..+||||. ++||||++|+ +++.||+||||||+|.++++
T Consensus 243 ~~~~~g~~W~CnfC~~~N~~P~~Y~-~~~~~~~~d~~~RpEL~--~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~ 319 (926)
T 1m2v_B 243 TFIEQGRRWRCNFCRLANDVPMQMD-QSDPNDPKSRYDRNEIK--CAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKS 319 (926)
T ss_dssp EEETTTTEEECTTTCCEEECCGGGT-TTSTTCGGGGGGSHHHH--CSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHS
T ss_pred EEeCCCCEEEccCCCCCCCCchhhc-cccccCccccccCcccc--CceEEEEcChhhccCCCCCcEEEEEEECCHHHHhh
Confidence 9999999999999999999999998 33 345679996 7999999995 56899999999999999876
Q ss_pred --HHHHHHHHHHHhhcCCC---CcEEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCCCCCCCCCCC
Q psy17260 320 --LGALRDSLQMSLSLLPK---NALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAP 394 (679)
Q Consensus 320 --l~~l~~si~~~L~~Lp~---~~~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~p~~~g~~ 394 (679)
++.++++|+++|+.||+ +++|||||||+.||||+++... .|+|+ +.+| ..|+++.|.+++|+
T Consensus 320 g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~-------~g~k~-~~~q-~qmlvvsdl~d~f~---- 386 (926)
T 1m2v_B 320 GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDS-------ENNEE-SADQ-INMMDIADLEEPFL---- 386 (926)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC-----------------C-CEEEEECCCSSCCC----
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcc-------cCCcc-cccc-hhhccccccccccC----
Confidence 78999999999999997 6999999999999999998753 25555 4444 34666666655552
Q ss_pred CCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhhcc-----------------
Q psy17260 395 RPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL----------------- 457 (679)
Q Consensus 395 ~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~~~----------------- 457 (679)
+..++||+|++||++.|+++|++|++ ++.+++++.||+|+||++|..+|+..|
T Consensus 387 -------P~~~~~Lv~l~e~~~~I~~lLe~L~~---~~~~~~~~~~~~G~AL~aA~~lL~~~GGrI~~F~sg~Pt~GpG~ 456 (926)
T 1m2v_B 387 -------PRPNSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGK 456 (926)
T ss_dssp -------SCSSSSSEETTTTHHHHHHHHHHHHH---HTSSCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTC
T ss_pred -------CCcccccccHHHHHHHHHHHHHhhhh---hhcCCCCCCccHHHHHHHHHHHHHhhCCEEEEEecCCCCCCCCc
Confidence 23478999999999999999999998 788899999999999999999999875
Q ss_pred C-----CCCCccCcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCC-----------------------ccccc---
Q psy17260 458 I-----RSHNDIHKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPP-----------------------WINGL--- 505 (679)
Q Consensus 458 l-----rs~~di~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~-----------------------sF~~~--- 505 (679)
| ++|.+++|++.+++ +++.+||++||.+|+ .++|||+|+++. +|+.+
T Consensus 457 l~~re~~~~~~~~ke~~~ll-~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~ 535 (926)
T 1m2v_B 457 LQRRNESGVVNTSKETAQLL-SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPN 535 (926)
T ss_dssp CCCCCC----CCTTHHHHHT-SCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHH
T ss_pred ccccccccccCcccchhhhc-cchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhh
Confidence 1 12334444444588 999999999999999 999999886543 33321
Q ss_pred --------c-----------------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEE
Q psy17260 506 --------L-----------------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEI 560 (679)
Q Consensus 506 --------~-----------------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei 560 (679)
+ ||+||+|++++||++.++ +++|+++++++|+||+|+|++
T Consensus 536 d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~---------------s~~~~l~~l~~d~s~av~f~~ 600 (926)
T 1m2v_B 536 DIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS---------------SDLCAFSTMPRDQSYLFEVNV 600 (926)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSS---------------TTEEEEEEECSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccC---------------cCceEeeccCCCCEEEEEEEe
Confidence 1 999999999999999654 568999999999999999999
Q ss_pred ecCCCCCCCCCCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHH
Q psy17260 561 VNQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVM 640 (679)
Q Consensus 561 ~~~~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~ 640 (679)
++. ++ ...+|||||++||+.+|+|||||||++++|+ +++.++|++||+||++++|||+|++++++++..|+|
T Consensus 601 ~~~----l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt---~~l~~v~~s~Dqea~~~llar~av~~~~~~~~~d~r 672 (926)
T 1m2v_B 601 DES----IM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTT---ESLAEVYASADQLAIASFYNSKAVEKALNSSLDDAR 672 (926)
T ss_dssp CSB----CC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEE---SCHHHHHHTBCHHHHHHHHHHHHHHHHHHSCSHHHH
T ss_pred ccC----CC-CCcEEEEEEEEEEcCCCCEEEEEEeeccccc---CCHHHHHHhcCHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 876 33 4689999999999999999999999999976 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc--------------cccCCcccH-HHHHHHHhccccCC
Q psy17260 641 RWADRTLIRLEGGA--------------PVLTEDVSL-QVFMEHLKKLAVSS 677 (679)
Q Consensus 641 ~~ld~~li~il~~y--------------liLPe~lkl-P~~~~~L~rS~~l~ 677 (679)
+||+++|+++++.| |+||++||+ |+|||+||||++|+
T Consensus 673 ~~L~~~li~il~~Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~ 724 (926)
T 1m2v_B 673 VLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR 724 (926)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC
Confidence 99999999999998 889999999 99999999999986
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.60 E-value=1.2e-16 Score=126.36 Aligned_cols=54 Identities=67% Similarity=1.386 Sum_probs=47.9
Q ss_pred ccCCccccCCCCcccEEcCceeEecCCCeEEeccCCCCCCCCcccccccCCCCC
Q psy17260 230 LQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQP 283 (679)
Q Consensus 230 v~~~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~N~vp~~Y~~~~~~~~r 283 (679)
.+++|+||+++.|+|||||||+|++++++|+|+||+..|++|++|+.+++.+++
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP 58 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP 58 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCC
Confidence 456899999766999999999999999999999999999999999887665544
No 9
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=99.48 E-value=1.7e-15 Score=178.16 Aligned_cols=164 Identities=26% Similarity=0.327 Sum_probs=117.8
Q ss_pred cccccccCCCCCCCCCCCCEEeecCCCCc----cceeEeecCCCCChHHHHHHHhcccccCCCCCCCCCCCCCCCCCCcc
Q psy17260 4 IGKYSMSAPAPAPRPGQPPRVHELGCEGI----SRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPGCEGISR 79 (679)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (679)
-|-|..-+|.++|.|=.-+-|=|.-+++. .|.-+....+.+|++..+++++|++.++ .|+|+.+.|+|
T Consensus 107 ~~tvEy~~p~~~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~--------~y~l~~~~~~~ 178 (768)
T 1m2o_A 107 STTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQ--------LHDLSSETIDR 178 (768)
T ss_dssp CSEEEEECSCCCCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEE--------ECCCSSSSSEE
T ss_pred cCCEEEECCCCCCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEE--------EEECCCCCCcc
Confidence 34555566665555544455556655543 3333444445667777777778887775 78999999999
Q ss_pred eeeecCCccccHHHHHHHH-hcccCCCCCCC-CC--CCCCCCCCCCCccceeeccccccccchhhccccCCCCCCCCCCC
Q psy17260 80 SYVFRGTKDVPAQRLQEML-RIGKYSMSAPA-PA--PRPGQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKR 155 (679)
Q Consensus 80 ~~vf~G~k~~~~~q~~~~l-~~~~~~~~~~~-~~--~~~~~~~~~~~~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R 155 (679)
+|||+|+|||+.+|+++|+ |++....+ .. +. ..+..+.+.+..+||+|++||++.|+++||+|++|+|++.+++|
T Consensus 179 ~~V~~g~k~~~~~q~~~~l~~l~~~~~~-~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~ 257 (768)
T 1m2o_A 179 CNVFRGDREYQLEALTEMLTGQKPTGPG-GAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHR 257 (768)
T ss_dssp EEEEETTSCCCHHHHHHHHHSCCCC----------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBC
T ss_pred eeeecCCccccHHHHHHHHhhccccccC-CccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCC
Confidence 9999999999999999999 88421000 00 00 00001111234899999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhhcccccCC
Q psy17260 156 ALRSTGVALSIAVGLLELKIS 176 (679)
Q Consensus 156 ~~r~tg~al~va~~ll~~~~p 176 (679)
+.||+|+||++|.++++.+.|
T Consensus 258 ~~~~~G~Al~~A~~ll~~~~~ 278 (768)
T 1m2o_A 258 PLRATGSALNIASLLLQGCYK 278 (768)
T ss_dssp CCCCHHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHHHHHHHHhhccC
Confidence 999999999999999986544
No 10
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=99.43 E-value=4e-15 Score=174.87 Aligned_cols=161 Identities=43% Similarity=0.636 Sum_probs=112.2
Q ss_pred ccccccCCCCCCCCCCCCEEeecCCCCc----cceeEeecCCCCChHHHHHHHhcccccCCCCCCCCCCCCCCCCCCcce
Q psy17260 5 GKYSMSAPAPAPRPGQPPRVHELGCEGI----SRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPGCEGISRS 80 (679)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (679)
|-|..-+|.+.|.|=.-+-|=|.-+++. .|.-+......+|++..+++++|++.++ .|+|+.+.|+|+
T Consensus 119 ~tvEy~~~~~~p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~--------~y~l~~~~~~~~ 190 (769)
T 2nut_A 119 SSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQ--------VHELGCEGISKS 190 (769)
T ss_dssp SSEEEEECSSCCCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEE--------EEESSCCSSCEE
T ss_pred CcEEEEccCCCCCCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEE--------EEeCCCCCCccc
Confidence 4444455555555545555666665543 2333333344566666677777777665 689999999999
Q ss_pred eeecCCccccHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCCccceeeccccccccchhhccccCCCCCCCCCCCCCCCc
Q psy17260 81 YVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRST 160 (679)
Q Consensus 81 ~vf~G~k~~~~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~t 160 (679)
|||||+|+|+.+|+++||+++.. .+ +...+..+..-..|..+||+|++||++.|+++||+|++|+|++.+++|+.||+
T Consensus 191 ~vf~G~k~~~~~q~~~ml~v~d~-~~-~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~ 268 (769)
T 2nut_A 191 YVFRGTKDLSAKQLQEMLGLSKV-PV-TQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSS 268 (769)
T ss_dssp EEEETTSCCCSHHHHHHHC---------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCH
T ss_pred eeecCCccccHHHHHHHhCCCCc-cc-ccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccch
Confidence 99999999999999999988421 00 00000000100123489999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccccC
Q psy17260 161 GVALSIAVGLLELKI 175 (679)
Q Consensus 161 g~al~va~~ll~~~~ 175 (679)
|+||++|.++++.+.
T Consensus 269 G~Al~~A~~lL~~~~ 283 (769)
T 2nut_A 269 GVALSIAVGLLECTF 283 (769)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999543
No 11
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=97.88 E-value=1.5e-06 Score=103.68 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=44.5
Q ss_pred ccceeeccccccccchhhccccCCCCCCCCCCCCCCCcchhhhhhhhcccc
Q psy17260 123 HKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLEL 173 (679)
Q Consensus 123 ~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~tg~al~va~~ll~~ 173 (679)
.+||+|++||++.|+++||+|++ ++..++|+.||+|+||++|..+++.
T Consensus 390 ~~~Lv~l~e~~~~I~~lLe~L~~---~~~~~~~~~~~~G~AL~aA~~lL~~ 437 (926)
T 1m2v_B 390 NSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIGG 437 (926)
T ss_dssp SSSSEETTTTHHHHHHHHHHHHH---HTSSCCCCCCCHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHhhhh---hhcCCCCCCccHHHHHHHHHHHHHh
Confidence 78999999999999999999999 4557899999999999999999874
No 12
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=97.76 E-value=2.7e-06 Score=100.53 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=44.5
Q ss_pred ccceeeccccccccchhhccccCCCCCCCCCCCCCCCcchhhhhhhhcccc
Q psy17260 123 HKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLEL 173 (679)
Q Consensus 123 ~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~tg~al~va~~ll~~ 173 (679)
.+||+|++||++.|+++||+|++ ++..++|+.||+|+||++|..+++.
T Consensus 274 ~~~Lv~l~e~~~~i~~lL~~L~~---~~~~~~~~~~a~G~AL~~A~~lL~~ 321 (810)
T 1pcx_A 274 NSMVVSLKACRQNIETLLTKIPQ---IFQSNLITNFALGPALKSAYHLIGG 321 (810)
T ss_dssp TTTSEETTTTHHHHHHHHHHHHH---HTTTCCCCCCCHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHhhhh---hccCCCCCCccHHHHHHHHHHHHHh
Confidence 78999999999999999999999 4567899999999999999999874
No 13
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.07 E-value=0.00011 Score=86.08 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=45.1
Q ss_pred ccceeeccccccccchhhccccCCCCCCCCCCCCCCCcchhhhhhhhcccc
Q psy17260 123 HKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLEL 173 (679)
Q Consensus 123 ~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~tg~al~va~~ll~~ 173 (679)
.+||+|++||++.|+++||+| ||.+.+++|+.||+|+||++|.++++.
T Consensus 239 ~~~lv~l~e~~~~i~~lL~~L---p~~~~~~~~~~~~~G~AL~aA~~ll~~ 286 (751)
T 3eh1_A 239 DSLLVNLYESKELIKDLLNAL---PNMFTNTRETHSALGPALQAAFKLMSP 286 (751)
T ss_dssp GGTSEETTTTHHHHHHHHHHG---GGTSTTCSCCCCCHHHHHHHHHHHHTT
T ss_pred hhhcccHHHHHHHHHHHHHhh---hHhhcCCCCCccchHHHHHHHHHHhhc
Confidence 799999999999999999999 678889999999999999999999874
No 14
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=97.00 E-value=0.4 Score=52.92 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=42.7
Q ss_pred CcEEEEEEECCcChh----hHHHHHHHHHHHhhcCCCCcEEEEEEECCeEEEE
Q psy17260 304 PLVFLFVVDTCMDEE----ELGALRDSLQMSLSLLPKNALVGLITFGQMVQVH 352 (679)
Q Consensus 304 pp~~vFvIDvs~~a~----~l~~l~~si~~~L~~Lp~~~~VG~ITfd~~V~~y 352 (679)
+-.++||||+|.+.. .++.++++++..++.|+++.+||+|+|++..+.+
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~ 129 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVV 129 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEE
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEE
Confidence 346899999999865 4899999999999999999999999999877664
No 15
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=96.28 E-value=0.0012 Score=77.71 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=38.4
Q ss_pred ccceeeccccccccchhhccccCCCCCCCCCCCCCCCcchhhhhhhhccccc
Q psy17260 123 HKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELK 174 (679)
Q Consensus 123 ~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~tg~al~va~~ll~~~ 174 (679)
.+||+|++||++.|+++||+|++. |+ +++.|+||.+.+|+++++...
T Consensus 257 ~~~lv~l~e~~~~i~~lL~~L~~~-~~----~~~~~~t~~g~al~aa~~~l~ 303 (766)
T 3eh2_A 257 DGFLVNVNESRAVITSLLDQIPEM-FA----DTRETETVFVPVIQAGMEALK 303 (766)
T ss_dssp TTSSBCTTTTHHHHHHHHHHHHHH-HT----TCCCCCCCSHHHHHHHHHHHH
T ss_pred cceeEeHHHHHHHHHHHHHhhhhh-cc----CCCCCcchHHHHHHHHHHHhc
Confidence 689999999999999999999873 33 455688888888887766544
No 16
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=95.18 E-value=0.15 Score=49.42 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=38.2
Q ss_pred CCCcEEEEEEECCcChh--hHHHHHHHHHHHhhcC---CCCcEEEEEEECCeEEE
Q psy17260 302 CAPLVFLFVVDTCMDEE--ELGALRDSLQMSLSLL---PKNALVGLITFGQMVQV 351 (679)
Q Consensus 302 ~~pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~L---p~~~~VG~ITfd~~V~~ 351 (679)
..+.-++||||+|.+.. .++.+++++...++.+ +.+.+||+|+|++.++.
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~ 67 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKI 67 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEE
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccce
Confidence 34678899999998754 4888888888876554 55789999999887654
No 17
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.17 Score=51.87 Aligned_cols=133 Identities=18% Similarity=0.003 Sum_probs=84.8
Q ss_pred EEEEEEECCcChh-------hHHHHHHHHHHHhhc---CCCCcEEEEEEECC-eEEEEEcCCCCccceeeecCCCCCchh
Q psy17260 306 VFLFVVDTCMDEE-------ELGALRDSLQMSLSL---LPKNALVGLITFGQ-MVQVHELGCEGISRSYVFRGTKDVPAQ 374 (679)
Q Consensus 306 ~~vFvIDvs~~a~-------~l~~l~~si~~~L~~---Lp~~~~VG~ITfd~-~V~~y~l~~~~~~~~~Vf~g~~~l~~~ 374 (679)
+.|||||+|.... ++++.++++...+.. ..++.+||||||.. ...++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 5699999998763 378888887777664 45668999999953 22221
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhh
Q psy17260 375 RLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLE 454 (679)
Q Consensus 375 ql~~~l~l~d~~~p~~~g~~~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~ 454 (679)
.|+...+..|...|+.|.. .....++.||+.|..+|+
T Consensus 63 ----------------------------------~plT~D~~~il~aL~~l~~---------~G~T~l~~gL~~A~~aLk 99 (268)
T 4b4t_W 63 ----------------------------------STFTAEFGKILAGLHDTQI---------EGKLHMATALQIAQLTLK 99 (268)
T ss_dssp ----------------------------------EEEESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHHHHHH
T ss_pred ----------------------------------cCCcchHHHHHHHhhhcCc---------CCCCChHHHHHHHHHHHH
Confidence 1111123456677777754 245789999999999998
Q ss_pred hccCCCCCc-c--CcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCC-cccccc
Q psy17260 455 GTLIRSHND-I--HKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPP-WINGLL 506 (679)
Q Consensus 455 ~~~lrs~~d-i--~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~-sF~~~~ 506 (679)
+...+.+.. | -.+. . . ....+-..++++++. .++.||++-+.+ .+++..
T Consensus 100 ~~~~k~~~~rIIlf~ds-~-~-~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~k 153 (268)
T 4b4t_W 100 HRQNKVQHQRIVAFVCS-P-I-SDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTEL 153 (268)
T ss_dssp TCSCTTSEEEEEEEECS-C-C-SSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCH
T ss_pred hcccCCCceEEEEEECC-C-C-CCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHH
Confidence 754222111 1 0110 1 1 223456778899888 999999887763 455443
No 18
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=94.37 E-value=0.1 Score=57.87 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred CCcEEEEEEECCcChh--hHHHHHHHHHHHhhcC---CCCcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDEE--ELGALRDSLQMSLSLL---PKNALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~L---p~~~~VG~ITfd~~V~~ 351 (679)
.+.-.+||||+|.+.. .++.++++++..++.| +++.+||+|+|++..+.
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~ 61 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKV 61 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEE
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCce
Confidence 4567899999998753 4888999999998877 78899999999987665
No 19
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=94.37 E-value=0.082 Score=51.06 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=41.1
Q ss_pred CCcEEEEEEECCcChh--hHHHHHHHHHHHhhcC---CCCcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDEE--ELGALRDSLQMSLSLL---PKNALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~L---p~~~~VG~ITfd~~V~~ 351 (679)
.+--.+|+||.|.... .++.+++.++..++.+ +++.+||+|+|++.++.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccE
Confidence 4557899999998753 4889999999999988 57899999999987665
No 20
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=94.30 E-value=0.013 Score=68.88 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.2
Q ss_pred ccceeeccccccccchhhccccCCCCCCCCCCCCCCCcchhhhhhhhccccc
Q psy17260 123 HKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELK 174 (679)
Q Consensus 123 ~rFl~P~~~~e~~l~~~le~L~~d~~~v~~~~R~~r~tg~al~va~~ll~~~ 174 (679)
.+||+|++||++.|+++||+|+.. |+ +.| .|+||.+.+|+++++...
T Consensus 261 ~~~Lv~l~e~~~~i~~lL~~L~~~-~~---~~~-~~~t~~g~al~aa~~~l~ 307 (770)
T 3efo_B 261 DGFLVNYQESQSVIHNLLDQIPDM-FA---DSN-ENETVFAPVIQAGMEALK 307 (770)
T ss_dssp SSSSBCTTTTHHHHHHHHHHHHHH-HH---TCC-CCCCCCHHHHHHHHHHHH
T ss_pred cceeeeHHHHHHHHHHHHHhhHhh-cc---CCC-CCcchHHHHHHHHHHHhc
Confidence 689999999999999999999664 75 344 478877777777665543
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=94.13 E-value=0.08 Score=50.98 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred CcEEEEEEECCcChhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEEELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||+|.+...++.+++.++..++.+. ++.+||+|+|++..+.
T Consensus 6 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~ 56 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRV 56 (200)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEE
T ss_pred cccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceE
Confidence 46789999999976678899999999999885 6799999999987654
No 22
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=94.09 E-value=0.088 Score=49.93 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=39.3
Q ss_pred CcEEEEEEECCcCh--hhHHHHHHHHHHHhhcC-CCCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDE--EELGALRDSLQMSLSLL-PKNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~L-p~~~~VG~ITfd~~V~~ 351 (679)
|.-.+|+||.|.+. ..++.+++.++..++.+ +++.+||+|+|++.++.
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~ 52 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT 52 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEE
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeE
Confidence 45679999999874 34888999999999888 45689999999987765
No 23
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=94.01 E-value=0.11 Score=50.36 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCCcEEEEEEECCcChh-------hHHHHHHHHHHHhhcCCCCcEEEEEEECCeEEE
Q psy17260 302 CAPLVFLFVVDTCMDEE-------ELGALRDSLQMSLSLLPKNALVGLITFGQMVQV 351 (679)
Q Consensus 302 ~~pp~~vFvIDvs~~a~-------~l~~l~~si~~~L~~Lp~~~~VG~ITfd~~V~~ 351 (679)
..+..++||||+|.+.. .++.+++.+...++.++ +.+||+|+|++..+.
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~ 64 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFT 64 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEE
T ss_pred cCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceE
Confidence 34678899999999854 58999999999999998 579999999877554
No 24
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=93.77 E-value=0.11 Score=50.60 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=41.1
Q ss_pred CcEEEEEEECCcChhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEEELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||+|.+...++.+++.++..++.|. ++.+||+|+|++.++.
T Consensus 7 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~ 57 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTH 57 (213)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEE
T ss_pred CccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccE
Confidence 56789999999987778899999999998874 6899999999987654
No 25
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=93.75 E-value=0.11 Score=50.14 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=40.4
Q ss_pred CcEEEEEEECCcCh--hhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDE--EELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+--.+|+||.|.+. ..++.+++.++..++.|+ ++.+||+|+|++..+.
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~ 65 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHA 65 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEE
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceE
Confidence 56789999999874 358899999999999886 5689999999987654
No 26
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=93.60 E-value=0.12 Score=48.75 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=39.8
Q ss_pred CcEEEEEEECCcCh--hhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDE--EELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||.|.+. ..++.+++.++..++.++ ++.+||+|+|++.++.
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~ 69 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHL 69 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEE
Confidence 56789999999875 358899999999998885 4589999999987654
No 27
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=93.57 E-value=0.11 Score=51.05 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=41.3
Q ss_pred CcEEEEEEECCcChhhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEEELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||+|.+...++.+++.+...++.+. ++.+||+|+|++.++.
T Consensus 22 ~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~ 72 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTH 72 (223)
T ss_dssp CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEE
T ss_pred cceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccE
Confidence 46789999999987778899999999998884 6799999999987654
No 28
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=93.36 E-value=0.12 Score=49.44 Aligned_cols=49 Identities=10% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCcEEEEEEECCcChh--hHHHHHHHHHHHhhcC-CCCcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDEE--ELGALRDSLQMSLSLL-PKNALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~L-p~~~~VG~ITfd~~V~~ 351 (679)
.+.-.+|+||.|.+.. .++.+++.++..++.| +++.+||+|+|++.++.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~ 55 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRI 55 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEE
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceE
Confidence 3567899999998743 4788888888888887 46789999999987764
No 29
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=93.31 E-value=0.23 Score=54.69 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=37.6
Q ss_pred cEEEEEEECCcCh--hhHHHHHHHHHHHhhcC---CCCcEEEEEEECCeEEE
Q psy17260 305 LVFLFVVDTCMDE--EELGALRDSLQMSLSLL---PKNALVGLITFGQMVQV 351 (679)
Q Consensus 305 p~~vFvIDvs~~a--~~l~~l~~si~~~L~~L---p~~~~VG~ITfd~~V~~ 351 (679)
.-.+||||+|.+. ..++.+++.++..++.+ +++.+||+|+|++..+.
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~ 53 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKI 53 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEE
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceE
Confidence 4579999999875 35888888888887754 55789999999976654
No 30
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=93.25 E-value=0.16 Score=48.38 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=39.8
Q ss_pred CcEEEEEEECCcCh--hhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDE--EELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||.|.+. ..++.+++.+...++.++ ++.+||+|+|++.++.
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~ 57 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTI 57 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceE
Confidence 56789999999875 348899999999998885 3589999999987664
No 31
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=93.16 E-value=0.18 Score=48.09 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCcEEEEEEECCcChh--hHHHHHHHHHHHhhcC-CCCcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDEE--ELGALRDSLQMSLSLL-PKNALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~L-p~~~~VG~ITfd~~V~~ 351 (679)
.+.-.+|+||+|.+.. .++..++.++..++.+ +++.+||+|+|++.++.
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~ 59 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQT 59 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEE
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccE
Confidence 3567899999998753 4778889999999998 78899999999987654
No 32
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=91.82 E-value=0.18 Score=50.78 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=38.3
Q ss_pred CCcEEEEEEECCcChh-hHHHHHHHHHHHhhcCC---CCcEEEEEEECCe
Q psy17260 303 APLVFLFVVDTCMDEE-ELGALRDSLQMSLSLLP---KNALVGLITFGQM 348 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~-~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~ 348 (679)
.|--+||+||+|.+.. +++.++++++..+..++ ++.+||+|+|++.
T Consensus 133 ~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 4678899999999754 49999999999998765 4689999999853
No 33
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=91.69 E-value=0.23 Score=50.67 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=40.2
Q ss_pred CCcEEEEEEECCcChh--hH-HHHHHHHHHHhhcCCC---CcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDEE--EL-GALRDSLQMSLSLLPK---NALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~--~l-~~l~~si~~~L~~Lp~---~~~VG~ITfd~~V~~ 351 (679)
.+.-++||||.|.+.. .+ +.++++++..++.|+. +.+||+|+|++.++.
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~ 74 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNARE 74 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEE
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceE
Confidence 3567899999998754 35 8899999999998875 789999999877654
No 34
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=91.21 E-value=0.29 Score=49.59 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=39.6
Q ss_pred CcEEEEEEECCcChh--hH-HHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEE--EL-GALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~--~l-~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||.|.+.. .+ +.+++.++..++.|. ++.+||+|+|++.++.
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~ 71 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTE 71 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEE
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcce
Confidence 456899999998754 36 578999999999886 6799999999987654
No 35
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=91.06 E-value=0.32 Score=47.08 Aligned_cols=125 Identities=18% Similarity=0.098 Sum_probs=73.0
Q ss_pred EEEEEEECCcChh-------hHHHHHHHHHHHhhc---CCCCcEEEEEEECCe-EEEEEcCCCCccceeeecCCCCCchh
Q psy17260 306 VFLFVVDTCMDEE-------ELGALRDSLQMSLSL---LPKNALVGLITFGQM-VQVHELGCEGISRSYVFRGTKDVPAQ 374 (679)
Q Consensus 306 ~~vFvIDvs~~a~-------~l~~l~~si~~~L~~---Lp~~~~VG~ITfd~~-V~~y~l~~~~~~~~~Vf~g~~~l~~~ 374 (679)
..+|+||+|.... +++..++++...+.. ..++.+||+|+|.+. -++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 5699999998754 377777776654432 234479999999642 111
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhh
Q psy17260 375 RLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLE 454 (679)
Q Consensus 375 ql~~~l~l~d~~~p~~~g~~~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~ 454 (679)
+.|+......+...|+++.. ..+..+|.||..|..+|+
T Consensus 61 ---------------------------------~~plT~d~~~i~~~L~~l~~---------~g~t~l~~aL~~A~~~l~ 98 (192)
T 2x5n_A 61 ---------------------------------LSTLTRDYGKFLSAMHDLPV---------RGNAKFGDGIQIAQLALK 98 (192)
T ss_dssp ---------------------------------EEEEESCHHHHHHHHTTCCC---------CSCCCHHHHHHHHHHHHH
T ss_pred ---------------------------------ecCCCCCHHHHHHHHHcCCC---------CCCchHHHHHHHHHHHHH
Confidence 11112224556666776543 235899999999999998
Q ss_pred hccCCCCCc--c--CcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcC
Q psy17260 455 GTLIRSHND--I--HKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVP 499 (679)
Q Consensus 455 ~~~lrs~~d--i--~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~ 499 (679)
...-+.+.. + -.+.. . . ...-..++++.+. .++.++++-+.
T Consensus 99 ~~~~~~~~~riiil~~~~~--~-~-~~~~~~~~a~~lk~~gi~v~~Ig~G 144 (192)
T 2x5n_A 99 HRENKIQRQRIVAFVGSPI--V-E-DEKNLIRLAKRMKKNNVAIDIIHIG 144 (192)
T ss_dssp TCSCTTSEEEEEEEECSCC--S-S-CHHHHHHHHHHHHHTTEEEEEEEES
T ss_pred hccccCCCceEEEEEECCC--C-C-CchhHHHHHHHHHHCCCEEEEEEeC
Confidence 643111121 1 01111 1 1 1233556777777 77777766554
No 36
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=90.80 E-value=0.51 Score=54.65 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=38.9
Q ss_pred CCcEEEEEEECCcCh--hhHHHHHHHHHHHhhcCC---CCcEEEEEEECCeEEE
Q psy17260 303 APLVFLFVVDTCMDE--EELGALRDSLQMSLSLLP---KNALVGLITFGQMVQV 351 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~Lp---~~~~VG~ITfd~~V~~ 351 (679)
.+.-++||||.|.+. ..++.++++++..++.|. .+.|||||+|++.+..
T Consensus 242 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~ 295 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKI 295 (741)
T ss_dssp CEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEE
T ss_pred CceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCce
Confidence 456789999999875 348888998888888764 4689999999876544
No 37
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=90.58 E-value=0.2 Score=47.48 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=37.0
Q ss_pred CCcEEEEEEECCcCh--hhHHHHHHHHHHHhhcC-CCCcEEEEEEECC
Q psy17260 303 APLVFLFVVDTCMDE--EELGALRDSLQMSLSLL-PKNALVGLITFGQ 347 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a--~~l~~l~~si~~~L~~L-p~~~~VG~ITfd~ 347 (679)
.|..++||||+|.+. ..++.+++++...++.+ +++.+||+|+|++
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~ 51 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRG 51 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESB
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECC
Confidence 356789999999876 34788999999998777 8889999999975
No 38
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=89.77 E-value=0.6 Score=43.71 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=34.3
Q ss_pred CcEEEEEEECCcChh-hHHHHHHHHHHHhhc-CCCCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEE-ELGALRDSLQMSLSL-LPKNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~-~l~~l~~si~~~L~~-Lp~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||.|.+.. +.+.+++.++..+.. +.++.+||+|+|++.++.
T Consensus 7 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~ 56 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTT 56 (185)
T ss_dssp EEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEE
T ss_pred CeeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceE
Confidence 446799999998754 355555556655554 345799999999877665
No 39
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=86.21 E-value=1.2 Score=41.53 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=31.1
Q ss_pred CcEEEEEEECCcChhh-HHHHHHHHHHHhhc-CCCCcEEEEEEECCeEEE
Q psy17260 304 PLVFLFVVDTCMDEEE-LGALRDSLQMSLSL-LPKNALVGLITFGQMVQV 351 (679)
Q Consensus 304 pp~~vFvIDvs~~a~~-l~~l~~si~~~L~~-Lp~~~~VG~ITfd~~V~~ 351 (679)
+.-.+|+||+|.+... ....++.++..+.. +.++.+||+|+|++..+.
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~ 55 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATI 55 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEE
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceE
Confidence 5678999999987543 11223333333333 346799999999887654
No 40
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=76.12 E-value=3.8 Score=49.96 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=40.3
Q ss_pred CcEEEEEEECCcChh--hHHHHHHHHHHHhhcCCCC-cEEEEEEECCeEEEE
Q psy17260 304 PLVFLFVVDTCMDEE--ELGALRDSLQMSLSLLPKN-ALVGLITFGQMVQVH 352 (679)
Q Consensus 304 pp~~vFvIDvs~~a~--~l~~l~~si~~~L~~Lp~~-~~VG~ITfd~~V~~y 352 (679)
+--.+|+||.|.... .++.+++.++..++.+.++ .+||+|+|++.++..
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~ 181 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH 181 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEE
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEE
Confidence 456799999998743 4889999999999998765 899999998776654
No 41
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=71.95 E-value=0.8 Score=37.28 Aligned_cols=21 Identities=24% Similarity=0.718 Sum_probs=17.8
Q ss_pred CCeEEeccCCCCCCCCccccc
Q psy17260 256 SKLWVCNFCFQRNAFPPQYAA 276 (679)
Q Consensus 256 g~~W~C~~C~~~N~vp~~Y~~ 276 (679)
.-.|+|++|...|.++.++..
T Consensus 15 ~~tWVCpICsfsN~v~s~fdp 35 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFTK 35 (76)
T ss_dssp CEEEECTTTCCEEEESSCCCT
T ss_pred ccceECccccccCcCccccCC
Confidence 457999999999999987743
No 42
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=69.55 E-value=3.6 Score=49.00 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCCcEEEEEEECCcChh--------hHHHHHHHHHHHhhcCC--CCcEEEEEEECCeEE
Q psy17260 302 CAPLVFLFVVDTCMDEE--------ELGALRDSLQMSLSLLP--KNALVGLITFGQMVQ 350 (679)
Q Consensus 302 ~~pp~~vFvIDvs~~a~--------~l~~l~~si~~~L~~Lp--~~~~VG~ITfd~~V~ 350 (679)
..+--.|||||+|.+.. +++.++++++..++.|. ++.+||||+|++.+.
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 45667899999998753 35678888888887764 478999999998653
No 43
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=69.10 E-value=4.8 Score=39.57 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=31.8
Q ss_pred CcEEEEEEECCcChhh-HHHHHHHHH---HHhhcCCCCcEEEEEEECCe
Q psy17260 304 PLVFLFVVDTCMDEEE-LGALRDSLQ---MSLSLLPKNALVGLITFGQM 348 (679)
Q Consensus 304 pp~~vFvIDvs~~a~~-l~~l~~si~---~~L~~Lp~~~~VG~ITfd~~ 348 (679)
|--.+|++|+|.+... ++.+++.+. +.|+.+.++.|+||.+|-..
T Consensus 3 pvDl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred ceEEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 3456999999998754 555555544 44455567899999999443
No 44
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=62.84 E-value=9.6 Score=42.83 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=35.0
Q ss_pred cEEEEEEECCcChh--------hHHHHHHHHHHHhhc---CCCCcEEEEEEECCe
Q psy17260 305 LVFLFVVDTCMDEE--------ELGALRDSLQMSLSL---LPKNALVGLITFGQM 348 (679)
Q Consensus 305 p~~vFvIDvs~~a~--------~l~~l~~si~~~L~~---Lp~~~~VG~ITfd~~ 348 (679)
-..+|+||+|.... .|+.+++++...+.. ..++-+||||+|++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 36799999998642 488888888888883 566689999999854
No 45
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=54.61 E-value=3.3 Score=32.09 Aligned_cols=25 Identities=32% Similarity=0.946 Sum_probs=18.6
Q ss_pred ccCCCCcccEEcCceeEecCCCeEEeccCCC
Q psy17260 236 LCMRNQCRAILNPLCQVDYKSKLWVCNFCFQ 266 (679)
Q Consensus 236 RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~ 266 (679)
-|.| |++++.- ....-.|+|++|..
T Consensus 35 ~CaR--CGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCAR--CGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTT--SEEEEES----STTCEEEEEHHHHH
T ss_pred eecc--cCCEeee----cCCeEEEEehhhhh
Confidence 4888 9988654 34456899999964
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=49.16 E-value=22 Score=39.02 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCCcEEEEEEECCcChhh-HH---HHHHHHHHHhhcCCCCcEEEEEEE-CCe
Q psy17260 301 QCAPLVFLFVVDTCMDEEE-LG---ALRDSLQMSLSLLPKNALVGLITF-GQM 348 (679)
Q Consensus 301 ~~~pp~~vFvIDvs~~a~~-l~---~l~~si~~~L~~Lp~~~~VG~ITf-d~~ 348 (679)
...|--.+|++|+|.+... ++ .+...|...|..+..+.|+||..| |+.
T Consensus 108 ~~ypvDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~ 160 (472)
T 3t3p_B 108 EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKP 160 (472)
T ss_dssp SSCCEEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCS
T ss_pred CCCCceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccc
Confidence 4557788999999998754 44 445566666677778899999999 444
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=45.53 E-value=28 Score=38.42 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=36.5
Q ss_pred CCCCcEEEEEEECCcChhh-HHHH---HHHHHHHhhcCCCCcEEEEEEE-CCeE
Q psy17260 301 QCAPLVFLFVVDTCMDEEE-LGAL---RDSLQMSLSLLPKNALVGLITF-GQMV 349 (679)
Q Consensus 301 ~~~pp~~vFvIDvs~~a~~-l~~l---~~si~~~L~~Lp~~~~VG~ITf-d~~V 349 (679)
...|--.+|++|+|.+... ++.+ ...|...|..+..+.|+||..| |+.|
T Consensus 129 ~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v 182 (503)
T 3v4v_B 129 EGYPVDLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTV 182 (503)
T ss_dssp SSCCEEEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSS
T ss_pred CCCceeEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeeccccc
Confidence 4567788999999998764 5544 4566666777778999999999 5443
No 48
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=43.40 E-value=41 Score=36.67 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=34.6
Q ss_pred CCCCcEEEEEEECCcChhh-HH---HHHHHHHHHhhcCCCCcEEEEEEEC
Q psy17260 301 QCAPLVFLFVVDTCMDEEE-LG---ALRDSLQMSLSLLPKNALVGLITFG 346 (679)
Q Consensus 301 ~~~pp~~vFvIDvs~~a~~-l~---~l~~si~~~L~~Lp~~~~VG~ITfd 346 (679)
...|-=..|++|+|.+... ++ .+...|...|..+..+.|+||..|-
T Consensus 119 ~~yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFv 168 (454)
T 3vi3_B 119 EDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFV 168 (454)
T ss_dssp SCCCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEEC
T ss_pred CCCceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEe
Confidence 3456678999999998754 44 4455666667777788999999993
No 49
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=39.68 E-value=35 Score=38.60 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.8
Q ss_pred cEEEEEEECCcChh---------hHHHHHHHHHHHhhcC---CCCcEEEEEEECCeE
Q psy17260 305 LVFLFVVDTCMDEE---------ELGALRDSLQMSLSLL---PKNALVGLITFGQMV 349 (679)
Q Consensus 305 p~~vFvIDvs~~a~---------~l~~l~~si~~~L~~L---p~~~~VG~ITfd~~V 349 (679)
-..+|+||+|.+.. .|+.+++.+...+... -++-+||+|.|++.-
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~ 92 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK 92 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCC
Confidence 45799999997532 3778888877777641 234799999998654
No 50
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=38.76 E-value=22 Score=40.95 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=35.2
Q ss_pred CCCCcEEEEEEECCcChhh-HHHHH---HHHHHHhhcCCCCcEEEEEEECC
Q psy17260 301 QCAPLVFLFVVDTCMDEEE-LGALR---DSLQMSLSLLPKNALVGLITFGQ 347 (679)
Q Consensus 301 ~~~pp~~vFvIDvs~~a~~-l~~l~---~si~~~L~~Lp~~~~VG~ITfd~ 347 (679)
...|-=.+|++|+|.+... ++.++ ..|...|..+.++.|+||..|-.
T Consensus 101 ~~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 151 (687)
T 3k6s_B 101 KGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVD 151 (687)
T ss_dssp CCCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECC
T ss_pred CCCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeec
Confidence 3456788999999998764 55444 45666667788899999999943
No 51
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=36.65 E-value=22 Score=41.00 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCCcEEEEEEECCcChhh-HHHHH---HHHHHHhhcCCCCcEEEEEEECC
Q psy17260 301 QCAPLVFLFVVDTCMDEEE-LGALR---DSLQMSLSLLPKNALVGLITFGQ 347 (679)
Q Consensus 301 ~~~pp~~vFvIDvs~~a~~-l~~l~---~si~~~L~~Lp~~~~VG~ITfd~ 347 (679)
...|-=.+|++|+|.+... ++.++ ..|...|..+.++.|+||..|-.
T Consensus 108 ~~~pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~D 158 (690)
T 3fcs_B 108 EDYPVDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVD 158 (690)
T ss_dssp BTCCEEEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECC
T ss_pred CCCCccEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeec
Confidence 3456778999999998764 55444 44555556667889999999954
No 52
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=34.17 E-value=15 Score=40.94 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=30.1
Q ss_pred CCCcEEEEEEECCcChhh------HHHHHHHHHHHhhcCCCCcEEEEEEECCeEE
Q psy17260 302 CAPLVFLFVVDTCMDEEE------LGALRDSLQMSLSLLPKNALVGLITFGQMVQ 350 (679)
Q Consensus 302 ~~pp~~vFvIDvs~~a~~------l~~l~~si~~~L~~Lp~~~~VG~ITfd~~V~ 350 (679)
+.+..++|+||+|.+... +.....++...+..+.++.+||+|+|++.+.
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~ 420 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEML 420 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEE
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCce
Confidence 456688999999997542 2222222222333344567999999997543
No 53
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.42 E-value=12 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=25.3
Q ss_pred CccccCCCCcccEEcCceeEecCCCeEEeccCCCCCCCCccc
Q psy17260 233 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQY 274 (679)
Q Consensus 233 ~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~N~vp~~Y 274 (679)
-|.+|.+ |+--. .+.-++.=.|+.|+..|-.++.|
T Consensus 66 ~p~~C~~--CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 66 KPAQCRK--CGFVF-----KAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp CCCBBTT--TCCBC-----CCCSSCCSSCSSSCCCCBCCCCE
T ss_pred ECcChhh--CcCee-----cccCCCCCCCcCCCCCccCCcce
Confidence 3689999 98653 23334556999999999877655
No 54
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=29.92 E-value=23 Score=31.26 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=20.6
Q ss_pred ccCCCCCCCCCCCCEEeecCCCC
Q psy17260 9 MSAPAPAPRPGQPPRVHELGCEG 31 (679)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (679)
|+.|.+.|+||+.+.+.-.+|+.
T Consensus 1 m~~~~~ep~pGDlI~~~r~~Y~H 23 (125)
T 2lkt_A 1 MASPHQEPKPGDLIEIFRLGYEH 23 (125)
T ss_dssp CCSSSCCCCTTCEEEEECSSSCE
T ss_pred CCCCCCCCCCCCEEEEeCCCccE
Confidence 88999999999999998888764
No 55
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=27.77 E-value=69 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.3
Q ss_pred ccccCCCCcccEEcCceeEecCCCeEEeccCCCC
Q psy17260 234 PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQR 267 (679)
Q Consensus 234 p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~ 267 (679)
...|.. |++ .-..++.....++|.-||..
T Consensus 5 ~~~CP~--C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPA--CES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTT--TSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcC--CCC---cceEEcCCCCeEECcccCCc
Confidence 356988 988 23467777788999999984
No 56
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=26.94 E-value=38 Score=31.18 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCCccCCccccCCCCccc---EE-cCceeEecCCCeEEeccCCCCC
Q psy17260 227 LPPLQYEPLLCMRNQCRA---IL-NPLCQVDYKSKLWVCNFCFQRN 268 (679)
Q Consensus 227 ip~v~~~p~RC~~~~C~A---Yi-Npf~~~~~~g~~W~C~~C~~~N 268 (679)
+|..-.+.++|.+|+|=+ -+ ..|-..+.....++|-.|+..-
T Consensus 98 lP~~I~gvl~C~Np~CITn~E~v~s~F~v~~~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 98 IPDEIEGTLKCTNPNCITNKEKVRGKFKIESKNPLKIRCYYCEKFL 143 (149)
T ss_dssp CCSEEESSSCCSCTTSGGGTSCCCCEEEEEEETTEEEEETTTCCBC
T ss_pred CcHHhCCeEEcCCCCCCcCCcccccEEEEEeCCCCEEEeeCCCcCh
Confidence 343333578999999944 34 4555556566789999999864
No 57
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=26.88 E-value=46 Score=31.23 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCCccCCccccCCCCccc-----EEcCceeEecCCCeEEeccCCCC
Q psy17260 227 LPPLQYEPLLCMRNQCRA-----ILNPLCQVDYKSKLWVCNFCFQR 267 (679)
Q Consensus 227 ip~v~~~p~RC~~~~C~A-----YiNpf~~~~~~g~~W~C~~C~~~ 267 (679)
+|..-.+.++|.+|+|=+ -+.-|-..+.....++|-.|++.
T Consensus 107 lP~~I~gvl~C~Np~CITn~~~Epvs~F~v~~~~~~~lrC~YCe~~ 152 (168)
T 1pg5_B 107 VPKVVKGILKCPNPYCITSNDVEAIPTFKTLTEKPLKMRCEYCETI 152 (168)
T ss_dssp CCSEEESSSCCSCTTBGGGTCTTSCCEEEEEETTTTEEEETTTCCE
T ss_pred CcHhhCCeEEcCCCCcccCCCCccccEEEEEcCCCCEEEeeCCCCE
Confidence 443333578999999922 23445444655778999999986
No 58
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=25.79 E-value=37 Score=37.80 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=30.7
Q ss_pred CCCcEEEEEEECCcChhh--------HHHHHHHHHHHhhcCCCCcEEEEEEECCeEEEEE
Q psy17260 302 CAPLVFLFVVDTCMDEEE--------LGALRDSLQMSLSLLPKNALVGLITFGQMVQVHE 353 (679)
Q Consensus 302 ~~pp~~vFvIDvs~~a~~--------l~~l~~si~~~L~~Lp~~~~VG~ITfd~~V~~y~ 353 (679)
+..-.++++||+|.+... +..+..+..-++..+..+.+||+|+|++.+....
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~~ 419 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPLG 419 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEECC
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEcC
Confidence 456788999999986532 1222212222233334556999999998665443
No 59
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=24.25 E-value=16 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.760 Sum_probs=0.0
Q ss_pred CCeEEeccCCCCCCCCcccc
Q psy17260 256 SKLWVCNFCFQRNAFPPQYA 275 (679)
Q Consensus 256 g~~W~C~~C~~~N~vp~~Y~ 275 (679)
...|+|.+|+..|.+|..+.
T Consensus 115 ~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 115 VSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp --------------------
T ss_pred ccceeccccccCCCCCCCCC
Confidence 46799999999999988764
No 60
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=27 Score=28.49 Aligned_cols=31 Identities=19% Similarity=0.621 Sum_probs=22.3
Q ss_pred cccCCCCcccEEcCceeEecCCCeEEeccCCCC
Q psy17260 235 LLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQR 267 (679)
Q Consensus 235 ~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~ 267 (679)
..|.. |+--+.--|++...+..|.|.+|...
T Consensus 43 ~~C~~--Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRG--CNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETT--TTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcc--cChhhcccccccCCCCCEEEeeCchh
Confidence 34666 66666777776665678999999754
No 61
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=23.85 E-value=18 Score=28.66 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=27.7
Q ss_pred CccccCCCCcccEEcCceeEecCCCeEEeccCCCC
Q psy17260 233 EPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQR 267 (679)
Q Consensus 233 ~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~ 267 (679)
.+..|.+ |++--.|-.+-...|. ..||-||..
T Consensus 8 ~~~~C~~--C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 8 GPTTCTN--CFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSCCCTT--TCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCC--CCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 4678999 9999999999988877 899999853
No 62
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=23.05 E-value=53 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=21.9
Q ss_pred cccCCCCcccEEcCceeEecCCCeEEeccCCCCCC
Q psy17260 235 LLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNA 269 (679)
Q Consensus 235 ~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~N~ 269 (679)
-.|.. |++- ..++.....|.|.-|+....
T Consensus 28 y~Cp~--CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 28 HACPN--CGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp EECSS--SCCE----EEEEEETTEEEETTTCCEEE
T ss_pred CcCCC--CCCc----ceeccCCCeEECCCCCCEec
Confidence 46888 9883 34556678999999998753
No 63
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=22.74 E-value=19 Score=26.05 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=25.3
Q ss_pred ccccCCCCcccEEcCceeEecCCCeEEeccCCCC
Q psy17260 234 PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQR 267 (679)
Q Consensus 234 p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~~~ 267 (679)
|..|.+ |++--.|..+-.+.|. -.||-||-.
T Consensus 1 p~~C~~--C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTN--CFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSS--SCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCc--cCCCCCCccccCCCCC-cccHHHHHH
Confidence 457998 9999999999888777 789999843
No 64
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=21.66 E-value=55 Score=30.26 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCCccCCccccCCCCccc---EE-cCceeEecC-CCeEEeccCCCC
Q psy17260 227 LPPLQYEPLLCMRNQCRA---IL-NPLCQVDYK-SKLWVCNFCFQR 267 (679)
Q Consensus 227 ip~v~~~p~RC~~~~C~A---Yi-Npf~~~~~~-g~~W~C~~C~~~ 267 (679)
+|..-.+.++|.+|+|=+ -+ ..|-..+.. ...++|-.|+..
T Consensus 98 lP~~I~gv~~C~Np~CITn~E~v~s~F~v~~~~~~~~lrC~YCe~~ 143 (153)
T 2be7_D 98 LPNEVENVFPCPNSNCITHGEPVTSSFSIKKTKGNIGLKCKYCEKT 143 (153)
T ss_dssp CCSEECSSSCCSCTTCTTSSSSCCCCEEEEEETTEEEEEETTTCCE
T ss_pred CcHHhCCeEEcCCCCCCcCCcccccEEEEeecCCCCEEEeeCCCCE
Confidence 343334578999999933 24 555544543 567999999976
No 65
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=20.93 E-value=24 Score=23.74 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=11.1
Q ss_pred CeEEeccCCCCCC
Q psy17260 257 KLWVCNFCFQRNA 269 (679)
Q Consensus 257 ~~W~C~~C~~~N~ 269 (679)
.-|.|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 4599999999983
No 66
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.49 E-value=23 Score=26.03 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=5.2
Q ss_pred eEEeccCCC
Q psy17260 258 LWVCNFCFQ 266 (679)
Q Consensus 258 ~W~C~~C~~ 266 (679)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666654
Done!