RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17260
(679 letters)
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 413 bits (1062), Expect = e-134
Identities = 285/557 (51%), Positives = 359/557 (64%), Gaps = 85/557 (15%)
Query: 176 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPL 235
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+
Sbjct: 4 GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPV 63
Query: 236 LCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 295
LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 64 LCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEY 123
Query: 296 TIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELG 355
+ + PL+FL+VVDTCM++E+L AL++S+QMSLSLLP ALVGLITFG+MVQVHELG
Sbjct: 124 VVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELG 183
Query: 356 CEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACE 415
CEGIS+SYVFRGTKD+ A++LQEML + K ++ P+ QPP R FLQPV+ +
Sbjct: 184 CEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNR--FLQPVQKID 241
Query: 416 MYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL------------------ 457
M TDLL LQ+ P V QG+ +GVA IAVGLLE T
Sbjct: 242 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG 301
Query: 458 ------------IRSHNDIHKGNNKLPGRMATKITKGLALRAA--------------YCR 491
IRS +DI K N K + TK + LA RAA
Sbjct: 302 PGMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 492 AIEYLLVPPWINGLLLEYE--------------------------------------LCL 513
+E P G ++ + + +
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 514 MGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGP 573
GAIGPCVSLN K CVS+ ++G GGT WK+C LSP TTLA++FE+VNQH APIPQGG
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 480
Query: 574 GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQ 633
G IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M R+ + RAE
Sbjct: 481 GAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET 540
Query: 634 DDGPDVMRWADRTLIRL 650
++GPDV+RW DR LIRL
Sbjct: 541 EEGPDVLRWLDRQLIRL 557
Score = 79.2 bits (194), Expect = 2e-15
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Query: 73 GCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQPVEAC 132
GCEGIS+SYVFRGTKD+ A++LQEML + K ++ P+ QPP P ++FLQPV+
Sbjct: 183 GCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPP--PSNRFLQPVQKI 240
Query: 133 EMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELKIS 176
+M+LTDLLG LQ+DPWPV QGKR LRS+GVALSIAVGLLE
Sbjct: 241 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP 284
Score = 54.2 bits (129), Expect = 1e-07
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 651 EGGAPVLTEDVSLQVFMEHLKKLAVSSTT 679
E GAP+LT+DVSLQVFM+HLKKLAVSS
Sbjct: 741 ESGAPILTDDVSLQVFMDHLKKLAVSSAA 769
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 337 bits (865), Expect = e-105
Identities = 188/586 (32%), Positives = 268/586 (45%), Gaps = 101/586 (17%)
Query: 184 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCR 243
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE +L Y P++C C+
Sbjct: 3 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCK 62
Query: 244 AILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPKMQCA 303
+ILNP C +D ++ W C C RN PPQY +++++ P EL Q TTIEY K
Sbjct: 63 SILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLEL--QSTTIEYITNKPVTV 120
Query: 304 PLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISRSY 363
P +F FVVD + E L +L++S+ SLSLLP NAL+GLIT+G +VQ+H+L E I R
Sbjct: 121 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCN 180
Query: 364 VFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQ---FLQPVEACEMYATD 420
VFRG ++ + L EML K + A + P + F P+E E
Sbjct: 181 VFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQ 240
Query: 421 LLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL----------------------- 457
LL L +V G TG A IA LL+G
Sbjct: 241 LLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIV 300
Query: 458 -------IRSHNDIHKGNNKLPGRMATKITKGLALRAA--------------YCRAIEYL 496
+RSH+DI + + + A K +A R A E
Sbjct: 301 NSELKDPLRSHHDIDSDHAQHY-KKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMK 359
Query: 497 LVPPWINGLLLEYE--------------------------------------LCLMGAIG 518
+ G+LL + L + G IG
Sbjct: 360 QLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIG 419
Query: 519 PCVSLNLKN-QCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIP-------- 569
++ + +S+ ++G+G T++WKM +LSP + A+FFEI N P
Sbjct: 420 HASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPGSA 479
Query: 570 -QGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVV 628
+ QFIT YQ SG ++RVTT+A I++ FDQEAAAV+M R+ V
Sbjct: 480 DRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLP--FGTPAIAASFDQEAAAVLMARIAV 537
Query: 629 NRAEQDDGPDVMRWADRTLIR-LEGGAPVLTEDVSLQVFMEHLKKL 673
++AE DDG DV+RW DRTLI+ + A +D +
Sbjct: 538 HKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLY 583
Score = 72.8 bits (177), Expect = 2e-13
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 73 GCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPT---PPVHKFLQPV 129
E I R VFRG ++ + L EML K + A + P +++F P+
Sbjct: 172 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 231
Query: 130 EACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELKISMTTYEEFFYQN 187
E E L LL L D W V G R LR+TG AL+IA LL+ + +
Sbjct: 232 EQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFAS 289
Score = 52.3 bits (124), Expect = 4e-07
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 652 GGAPVLTEDVSLQVFMEHLKKLAVSSTT 679
G VLT+DVSLQ FM HL+++AVS
Sbjct: 741 GSTIVLTDDVSLQNFMTHLQQVAVSGQA 768
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 223 bits (570), Expect = 1e-62
Identities = 89/720 (12%), Positives = 180/720 (25%), Gaps = 126/720 (17%)
Query: 8 SMSAPAPAPRPGQPPRVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAP 67
+ P Q P + A + +
Sbjct: 12 AQLQYGQNATPLQQP------------AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQ 59
Query: 68 RPGQPGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQ 127
+ P E + + T + L + + + P + G P
Sbjct: 60 QFLTPAQEQLHQQIDQATTS-MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Query: 128 PVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELKISMTTYEEFFYQN 187
P + +P+ L+ N
Sbjct: 119 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPP--ERMLVPSELSN 176
Query: 188 EERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---LPPLQYEPLLCMRNQCRA 244
D IR T N P + + +P G + +P + D PPL + L+ +CR+
Sbjct: 177 ASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRS 236
Query: 245 ILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ-----HQPAELHPQFTTIEYTIPK 299
+NP + + W CNFC N P Q + E+ +EY PK
Sbjct: 237 YMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIK--CAVMEYMAPK 294
Query: 300 MQCA----PLVFLFVVDTCMDEEELGALR---DSLQMSLSLLPK---NALVGLITFGQMV 349
P + F++D + G L ++L +L +P + ++ +
Sbjct: 295 EYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAI 354
Query: 350 QVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQ 409
++ + + + L+E P P +
Sbjct: 355 HYFKIPLDSENNEESADQINMMDIADLEE--------------------PFLPRPNSMVV 394
Query: 410 PVEACEMYATDLL------------------AALQ--KGPVAVHQGREHCGPTGVAHVIA 449
++AC LL AL+ + G+ + + +
Sbjct: 395 SLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPN-LG 453
Query: 450 VGLLEGTLIRSHNDIHKGNNKLPGRMATKITKGLALRAA--------------YCRAIEY 495
+G L+ + K +L K + + Y
Sbjct: 454 IGKLQRRNESGVVNTSKETAQLLSC-QDSFYKNFTIDCSKVQITVDLFLASEDYMDVASL 512
Query: 496 LLVPPWINGLLLEYELCLMGAIGPCVSLNLKNQCVSDQDLGMG----------------- 538
+ + G Y P + + +
Sbjct: 513 SNLSRFTAGQTHFYPG--FSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSR 570
Query: 539 --------GTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFITHYQAPSGEKK 590
+ T+ + + + A +Q + +++
Sbjct: 571 FYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYC-----YVQVAVLLSLNNSQRR 625
Query: 591 VRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL 650
+R+ T+A T L + + DQ A A V +A D ++++ +
Sbjct: 626 IRIITLAMPT---TESLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDI 682
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 212 bits (541), Expect = 2e-59
Identities = 89/551 (16%), Positives = 158/551 (28%), Gaps = 109/551 (19%)
Query: 178 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPL------- 230
T + N IRCT P + A + +P+ + +PL P
Sbjct: 31 TNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHG 90
Query: 231 QYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ-------HQP 283
+ PL C R C+A + P Q + + C FC N PPQY + +
Sbjct: 91 ESGPLRCNR--CKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 148
Query: 284 AELH----PQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGALR---DSLQMSLSLLPK 336
EL T++Y +P F+F++D + G +R + L+ L LP+
Sbjct: 149 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPR 208
Query: 337 NALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRP 396
G +G ++ F K AQ ++
Sbjct: 209 EG-------GAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVV-------------SDV 248
Query: 397 GQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGP--------------- 441
P FL V T LL + + + P
Sbjct: 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECA 308
Query: 442 -------TGVAHVIAVGLLEGTLIRSHNDIHKGNNKLPGRMATKITKGLALRAA------ 488
T + A G L+ R + K K + T + LA
Sbjct: 309 GKLFLFHTSLPIAEAPGKLKNRDDRKLINTDK--EKTLFQPQTGAYQTLAKECVAQGCCV 366
Query: 489 --------YCRAIEYLLVPPWINGLLLEYE------------------LCLMGAIGPCVS 522
Y +VP G + +Y + + +
Sbjct: 367 DLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMR 426
Query: 523 LNLKNQCVSDQDLG---MGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFI 579
+ + G M T ++ L + T+ + F+ H + + +Q
Sbjct: 427 VRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFK----HDDRLNEESGALLQCA 482
Query: 580 THYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDV 639
Y + +G++++R+ +A N TQL + + + M + V
Sbjct: 483 LLYTSCAGQRRLRIHNLALNC---CTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAV 539
Query: 640 MRWADRTLIRL 650
++
Sbjct: 540 RDTLITQCAQI 550
Score = 39.5 bits (91), Expect = 0.004
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 19/141 (13%)
Query: 32 ISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPGCEGISRSYVFRGTKDVPA 91
+S + + G + + L+ +L + + G ++ F K A
Sbjct: 182 VSYNAIRTGLVRLLCEELKSLL---DFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLA 238
Query: 92 QRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVH 151
Q ++ P + FL V +T LL + +
Sbjct: 239 QPQMMVV-------------SDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTR 285
Query: 152 QGKRALRSTGVALSIAVGLLE 172
+ + + + L+
Sbjct: 286 ETETVF---VPVIQAGMEALK 303
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 212 bits (540), Expect = 2e-59
Identities = 92/544 (16%), Positives = 161/544 (29%), Gaps = 110/544 (20%)
Query: 178 TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLC 237
+ N D RCT P ++ ++ +P+G L P ++ LP + ++
Sbjct: 28 NLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVR 87
Query: 238 MRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAA--ITEQHQPAELHP--QFTTI 293
R+ CR +NP + W CN C++ N P ++ +T + P Q +T+
Sbjct: 88 CRS-CRTYINPFVSFID-QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTV 145
Query: 294 EYTIPKMQCA----PLVFLFVVDTCMDEEELG---ALRDSLQMSLSLLPK--NALVGLIT 344
E+ P V+LFV+D + E G L SL +L LP +G +T
Sbjct: 146 EFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMT 205
Query: 345 FGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPAR 404
F + + L + D +
Sbjct: 206 FDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPD-------------------------- 239
Query: 405 TQFLQPVEACEMYATDLLAALQK------------GPV--AVHQGREHCGPTGVAHV--- 447
L + + DLL AL GP A + G
Sbjct: 240 -SLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQL 298
Query: 448 --IAVGLLEGTLIRSHNDIHKGNNKLPGRMATKITKGLALRAA--------------YCR 491
+ GLL+ + K L AT K LAL + Y
Sbjct: 299 PSLGAGLLQSREDPNQRSSTKVVQHL--GPATDFYKKLALDCSGQQTAVDLFLLSSQYSD 356
Query: 492 AIEYLLVPPWINGLLLEYE-------------------------LCLMGAIGPCVSLNLK 526
+ + G + Y + + + L
Sbjct: 357 LASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLS 416
Query: 527 NQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFITHYQAPS 586
+ T + ++P+ A+ + C Q Y +
Sbjct: 417 MHTFHGN-FFVRSTDLLSLANINPDAGFAVQLS----IEESLTDTSLVCFQTALLYTSSK 471
Query: 587 GEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRT 646
GE+++RV T+ + L + +G D +AA ++ M V+R+ D
Sbjct: 472 GERRIRVHTLCLPV---VSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNA 528
Query: 647 LIRL 650
++
Sbjct: 529 VVDS 532
Score = 38.4 bits (88), Expect = 0.009
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 115 GQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLE 172
P L + + + DLL L P + + G AL A L+
Sbjct: 231 DDVFLPTPDSLLVNLYESKELIKDLLNAL---PNMFTNTRETHSALGPALQAAFKLMS 285
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 209 bits (533), Expect = 2e-58
Identities = 77/561 (13%), Positives = 149/561 (26%), Gaps = 125/561 (22%)
Query: 176 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD-------LP 228
T N IRCT +P + A + +P+ + +P P +
Sbjct: 33 VTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVN 92
Query: 229 PLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQ------ 282
+ P+ C R C+A + P Q + + C FC N PP Y +
Sbjct: 93 HGESGPVRCNR--CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHY 150
Query: 283 -----PAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELG---ALRDSLQMSLSLL 334
+ T++Y P F+F++D + G + + L+ L +
Sbjct: 151 EKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKI 210
Query: 335 PK-------NALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSM 387
PK VG IT+ +++ + +
Sbjct: 211 PKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG----------------- 253
Query: 388 SAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHV 447
+ P FL + + +LL + P E+
Sbjct: 254 ----------EVFVPLLDGFLVNYQESQSVIHNLLDQI---PDMFADSNENETVFAPVIQ 300
Query: 448 IAVGLLE---------------------GTLIRS--HNDIHKGNNKLPGRMATKITKGLA 484
+ L+ G L ++ K+ + T + LA
Sbjct: 301 AGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLA 360
Query: 485 LRAA--------------YCRAIEYLLVPPWINGLLLEYE------------------LC 512
Y LVP G L +Y +
Sbjct: 361 KDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE 420
Query: 513 LMGAIGPCVSLNLKNQCVSDQDLG---MGGTASWKMCTLSPNTTLALFFEIVNQHGAPIP 569
+ + + G M T +M + + + + F+ H +
Sbjct: 421 KKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFK----HDDKLS 476
Query: 570 QGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVN 629
+ IQ Y SG++++R+ + N ++QL + + +A +
Sbjct: 477 EDSGALIQCAVLYTTISGQRRLRIHNLGLNC---SSQLADLYKSCETDALINFFAKSAFK 533
Query: 630 RAEQDDGPDVMRWADRTLIRL 650
+ +
Sbjct: 534 AVLHQPLKVIREILVNQTAHM 554
Score = 38.7 bits (89), Expect = 0.006
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 115 GQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELK 174
G+ P + FL + + + +LL + P T A I G+ LK
Sbjct: 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQI-----PDMFADSNENETVFAPVIQAGMEALK 307
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 194 bits (493), Expect = 9e-53
Identities = 87/614 (14%), Positives = 171/614 (27%), Gaps = 123/614 (20%)
Query: 111 APRPGQPPTPPVHKFLQPVEACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGL 170
AP GQP + + ++P+ + DLL L + L
Sbjct: 2 APAYGQPS-AAMGQNMRPMNQ--LYPIDLLTELPPPITDLTLPPPPLVIP---------- 48
Query: 171 LELKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD---L 227
N D IR T N P + + +P G + +P + D
Sbjct: 49 -----PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDP 103
Query: 228 PPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELH 287
PPL + L+ +CR+ +NP + + W CNFC N P Q + + P +
Sbjct: 104 PPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQS-DPNDPKSRY 162
Query: 288 P----QFTTIEYTIPK----MQCAPLVFLFVVDTCMDEEELG---ALRDSLQMSLSLLPK 336
+ +EY PK Q P + F++D + G ++L +L +P
Sbjct: 163 DRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPN 222
Query: 337 ---NALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPA 393
+ ++ + ++ + + + L+E
Sbjct: 223 HDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEE--------------- 267
Query: 394 PRPGQPPRPARTQFLQPVEACEMYATDLLAALQKG-----------PVAVHQGREHCGPT 442
P P + ++AC LL + + A+ G
Sbjct: 268 -----PFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV 322
Query: 443 GVAHVI--------AVGLLEGTLIRSHNDIHKGNNKLPGRMATKITKGLALRAA------ 488
G ++ +G L+ + K +L K + +
Sbjct: 323 GGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQ-DSFYKNFTIDCSKVQITV 381
Query: 489 --------YCRAIEYLLVPPWINGLLLEY------------------------ELCLMGA 516
Y + + G Y + C+
Sbjct: 382 DLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETV 441
Query: 517 IGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPGCI 576
+ S L+ + T+ + + + A +
Sbjct: 442 MRARGSTGLRMSRFYGHF-FNRSSDLCAFSTMPRDQSYLFEVNVDESIMADYC-----YV 495
Query: 577 QFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDG 636
Q + ++++R+ T+ T L + + DQ A A V +A
Sbjct: 496 QVAVLLSLNNSQRRIRIITL---AMPTTESLAEVYASADQLAIASFYNSKAVEKALNSSL 552
Query: 637 PDVMRWADRTLIRL 650
D ++++ +
Sbjct: 553 DDARVLINKSVQDI 566
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein
complex-II, endoplasmic reticulum, golgi, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Length = 59
Score = 101 bits (254), Expect = 1e-26
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 227 LPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPA 284
EP+LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPA
Sbjct: 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 1e-06
Identities = 80/470 (17%), Positives = 133/470 (28%), Gaps = 159/470 (33%)
Query: 265 FQRNAFPP--QYAAITEQHQPAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGA 322
F + P +AA E PAEL +F L + V + ++ ++G
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKF--------------LGY---VSSLVEPSKVGQ 79
Query: 323 LRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRI 382
L + L+ L G +H L + D + +E+++
Sbjct: 80 FDQVLNLCLTEFENCYLEG-------NDIHALAAK-------LLQENDTTLVKTKELIKN 125
Query: 383 GKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVH-----QG-- 435
Y ++A A RP + L A+ +G + QG
Sbjct: 126 --Y-ITARIMAKRPFDKKSNSA----------------LFRAVGEGNAQLVAIFGGQGNT 166
Query: 436 -------RE--HCGPTGVAHVI--AVGLLEGTLIRSHNDIHKGNNKLPGRMATKITKGLA 484
R+ V +I + L LIR+ D K T+GL
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEK-----------VFTQGLN 214
Query: 485 LRA-----AYCRAIEYLL-VP---PWINGL--LLEYELCLMGAIGPCVSLNLKNQCVSDQ 533
+ + +YLL +P P I G+ L Y + L +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVT-------AKLLGFTPGELRSY 266
Query: 534 DLGMGG------TA-------SWKMCTLSPNTTLA---LFFEI--VNQHGAPIPQGGPGC 575
G G TA SW+ + + A LFF I P P
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFF-IGVRCYEAYPNTSLPPSI 323
Query: 576 IQFITHYQAPSGEKK----VRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRA 631
++ + E + ++ + + ++ +S I +VN
Sbjct: 324 LE----DSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNSHLPAGKQVEI---SLVN-- 372
Query: 632 EQDDGPD--VMRWADRTLIRLEGGAPVLTEDVSLQVFMEHLKKLAVSSTT 679
G V+ G P SL L+K S
Sbjct: 373 ----GAKNLVV-----------SGPP-----QSLYGLNLTLRKAKAPSGL 402
Score = 29.2 bits (65), Expect = 5.8
Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 75/240 (31%)
Query: 323 LRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEG--ISRSY---VFRGTKD--VPAQR 375
+D+ S+ + N V L +H G +G I +Y +F D + ++
Sbjct: 1653 FKDTYGFSILDIVINNPVNLT-------IHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 376 LQEML--RIGKYSMSAPAPAPRPGQPPRPARTQFLQP----VEACEMYATDLLAALQ-KG 428
+ + + Y+ + TQF QP +E A L+ KG
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLS--------ATQFTQPALTLME----KA--AFEDLKSKG 1751
Query: 429 P------VAVHQ-GREHCGPTGVAHVI----AVGLLE--GTLIRS--HNDIHKGNNK--- 470
A H G E+ +A V+ V ++ G ++ D +N
Sbjct: 1752 LIPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 471 --LPGRMATKITKGLALRAAYCRAIEYLLVPPWINGLLLEYELCLMGAIGPCVSLNLKNQ 528
PGR+A ++ AL+ + G L+E I V+ N++NQ
Sbjct: 1811 AINPGRVAASFSQE-ALQ-YVVERVGK------RTGWLVE--------I---VNYNVENQ 1851
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 9e-06
Identities = 50/367 (13%), Positives = 110/367 (29%), Gaps = 102/367 (27%)
Query: 349 VQVHELGCEGISRSYVFRGTKDVPAQRLQEMLR--IGKYSMSAPAPAPRPGQPPRPARTQ 406
H+ + I + + + +Q+M + + K + + T
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----MSKDAVSGTL 65
Query: 407 FL------QPVEACEMYATD--------LLAALQKGPVAVHQGREHCGPTGVAHVIAVGL 452
L + E + + + L++ ++ E P+ +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT---------EQRQPS---------M 107
Query: 453 LEGTLIRSHNDIHKGNNKLPGRMATKITKGLALRAAYC--RAIEYLLVPPWINGLLLEYE 510
+ I + ++ N +++ L LR A R + +L+ +G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DG------ 157
Query: 511 LCLMGAIGPCVSLNLKNQCVSDQDL--GMGGTASW---KMCTLSPNTTLA----LFFEIV 561
+ G + + M W K C SP T L L ++I
Sbjct: 158 ---VLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQID 210
Query: 562 ------NQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISS--- 612
+ H + I + S + ++R ++ + + L ++ +
Sbjct: 211 PNWTSRSDHSSNIKL------------RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 613 --GFDQEAAAVIMGRMVV-NRAEQDDGPDVMRWADRTLIRLEGGAPVLTEDVSLQVFMEH 669
F+ ++++ R +Q D + A T I L+ + LT D +
Sbjct: 259 WNAFNLSC------KILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLL--- 307
Query: 670 LKKLAVS 676
LK L
Sbjct: 308 LKYLDCR 314
Score = 44.5 bits (104), Expect = 1e-04
Identities = 69/549 (12%), Positives = 136/549 (24%), Gaps = 186/549 (33%)
Query: 19 GQPPRVHELGCEGISRSYVFRGT-----KDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPG 73
V S + T +++ + ++E+LRI Y QP
Sbjct: 56 MSKDAV--------SGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQP- 105
Query: 74 CEGISRSYVF---RGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQPVE 130
++R Y+ R D KY++ R P K
Sbjct: 106 -SMMTRMYIEQRDRLYNDNQ--------VFAKYNV------SRL-----QPYLK------ 139
Query: 131 ACEMSLTDLLGGLQKDPW-PVH----QGK-----RALRSTGVALSIAVGLLELKISMTTY 180
L L L+ + GK S V + + L +
Sbjct: 140 -----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---- 190
Query: 181 EEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEP------ 234
N + L+ + + + L+
Sbjct: 191 ----NCNSPETVLEMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 235 -LLCMRNQCRA--ILNPLCQVD--YKSKLWVCNFCFQRNAFPPQ--------YAAITEQH 281
LL + +L +K W NAF + +T+
Sbjct: 236 RLLKSKPYENCLLVL------LNVQNAKAW--------NAFNLSCKILLTTRFKQVTDFL 281
Query: 282 QPAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNA--- 338
A T + + +E L L LP+
Sbjct: 282 SAAT---------TTHISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 339 ---LVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPR 395
+ +I + ++ +G++ + K V +L ++ S++
Sbjct: 326 NPRRLSII--AESIR------DGLAT---WDNWKHVNCDKLTTIIES---SLNV------ 365
Query: 396 PGQPPRPARTQFLQPVEACEMYATDLLAALQKG---PVAV-----HQGREHCGPTGVAHV 447
L+P E +M+ D L+ P + + V +
Sbjct: 366 ------------LEPAEYRKMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 448 IAVGLLEG----TLIRSHNDIH---KGNNKLPGRMATKITKGLALRAAYCRAIEYLLVPP 500
L+E + I I+ K + + I + + L+PP
Sbjct: 412 HKYSLVEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPP 467
Query: 501 WINGLLLEY 509
+++ +
Sbjct: 468 YLDQYFYSH 476
Score = 37.5 bits (86), Expect = 0.017
Identities = 60/373 (16%), Positives = 112/373 (30%), Gaps = 93/373 (24%)
Query: 306 VFL--FVVD-TCMDEEEL--GALRDS-----LQMSLSLLPKNALVGLITFGQMVQVHELG 355
VF FV + C D +++ L + ++ L + Q V +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 356 CEGISRSYVFRGTKDVPAQRLQEMLRIGKYS-----MSAPAPAPRPGQPPRPARTQFLQP 410
E + +Y F + + ++ Q + Y + R QP
Sbjct: 84 EEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL------QP 136
Query: 411 VEACEMYATDLLAALQKGP-VAVHQGREHCGPTGVAHVIAVGLLEGTLIRSHND-----I 464
L L+ V + G G T +A+ + ++ D +
Sbjct: 137 YLK----LRQALLELRPAKNVLID-GVLGSGKT----WVALDVCLSYKVQCKMDFKIFWL 187
Query: 465 HKGNNKLPG-------RMATKITKGLALRAAYCRAIEYLL--VPPWINGLLLE--YELCL 513
+ N P ++ +I R+ + I+ + + + LL YE CL
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 514 MGAIGPCVSLNLKN---------QC----------VSDQDLGMGGTASWKM----CTLSP 550
+ V LN++N C V+D L T + TL+P
Sbjct: 248 L------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTP 300
Query: 551 NTTLALFFEIVNQHGAPIP----QGGPGCIQFITHYQAPSGEK-KVRVTTIARNWADATT 605
+ +L + ++ +P P + I E + + T NW
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRDGLATW-DNWKHVNC 352
Query: 606 -QLDH-ISSGFDQ 616
+L I S +
Sbjct: 353 DKLTTIIESSLNV 365
Score = 31.7 bits (71), Expect = 1.0
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 154 KRALRSTGVALSIAVGLLELKISMTTYEEFFYQNEERD 191
++ +R A + + +L + Y+ + N+ +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive
lymphoma protein 3, SGC, structural genomics consortium,
alternative splicing; HET: APR; 2.20A {Homo sapiens}
PDB: 3v2b_A*
Length = 199
Score = 31.5 bits (72), Expect = 0.65
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 610 ISSG---FDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLEGGAPVLTEDVSLQVF 666
I +G + A + +V+ + Q P + +++ V+ + L +F
Sbjct: 137 IGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKT------VKV-----VIFQPELLNIF 185
Query: 667 MEHLKKLAVSSTT 679
+ +KK +S++
Sbjct: 186 YDSMKKRDLSASL 198
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 47 QRLQEMLRIGKYSM-SAPAPA 66
++LQ L++ Y+ SAPA A
Sbjct: 23 KKLQASLKL--YADDSAPALA 41
Score = 29.9 bits (66), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 92 QRLQEMLRIGKYSM-SAPAPA 111
++LQ L++ Y+ SAPA A
Sbjct: 23 KKLQASLKL--YADDSAPALA 41
Score = 29.9 bits (66), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 374 QRLQEMLRIGKYSM-SAPAPA 393
++LQ L++ Y+ SAPA A
Sbjct: 23 KKLQASLKL--YADDSAPALA 41
Score = 28.4 bits (62), Expect = 4.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 16/39 (41%)
Query: 189 ERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDL 227
E+ ++ KL+AS L LY P L
Sbjct: 18 EKQALK---------KLQAS-LK-----LYAD-DSAPAL 40
>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1
d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D
2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D
Length = 300
Score = 29.6 bits (66), Expect = 3.6
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 316 DEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISR-------------- 361
D E L A +DS+ +L +N + F + Q E G EG +R
Sbjct: 98 DLENLPASKDSIVHQAGMLKRNCFASV--FEKYFQFQEEGKEGENRAVIHYRDDETMYVE 155
Query: 362 ----------SYVFRGTKDVPAQR--LQEMLRIGKYSMSAPAPAPRPGQPPR 401
S VF+ DV + +QE + S +AP +PP
Sbjct: 156 SKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPL 207
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 26.5 bits (58), Expect = 8.4
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 237 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNA 269
C CR C++ + W C C ++
Sbjct: 48 CNHLVCRD-----CRIQESNGTWRCKVCSGPSS 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,436,928
Number of extensions: 639938
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1423
Number of HSP's successfully gapped: 42
Length of query: 679
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 579
Effective length of database: 3,909,693
Effective search space: 2263712247
Effective search space used: 2263712247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)