RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17260
(679 letters)
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 146 bits (369), Expect = 3e-41
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 510 ELCLMGAIGPCVSLNLKN-QCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPI 568
+L + G IG ++ + +S+ ++G+G T++WKM +LSP + A+FFEI N
Sbjct: 64 DLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSN 123
Query: 569 PQGGP---------GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGF 614
P QFIT YQ SG ++RVTT+A T I++ F
Sbjct: 124 PMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTP--AIAASF 176
Score = 75.2 bits (185), Expect = 2e-16
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 184 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPD 226
F NE+ +G+R TWNV+PS++ +A+ V+PVGCLY PLKE D
Sbjct: 2 FETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDD 44
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 148 bits (374), Expect = 8e-41
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 304 PLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISRSY 363
P +F FVVD + E L +L++S+ SLSLLP NAL+GLIT+G +VQ+H+L E I R
Sbjct: 2 PPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCN 61
Query: 364 VFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQ---PPRPARTQFLQPVEACEMYATD 420
VFRG ++ + L EML K + A + P + +F P+E E
Sbjct: 62 VFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQ 121
Query: 421 LLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL----------------------- 457
LL L +V G TG A IA LL+G
Sbjct: 122 LLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIV 181
Query: 458 -------IRSHNDIHKGNNKLPGRMATKITKGLALRAA 488
+RSH+DI + + + A K +A R A
Sbjct: 182 NSELKDPLRSHHDIDSDHAQHY-KKACKFYNQIAQRVA 218
Score = 82.7 bits (204), Expect = 4e-18
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 73 GCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQ---PPTPPVHKFLQPV 129
E I R VFRG ++ + L EML K + A + P +++F P+
Sbjct: 53 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 112
Query: 130 EACEMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLELKI 175
E E L LL L D W V G R LR+TG AL+IA LL+
Sbjct: 113 EQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCY 158
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 75
Score = 109 bits (275), Expect = 1e-29
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 226 DLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAE 285
+L Y P++C C++ILNP C +D ++ W C C RN PPQY +++++ P E
Sbjct: 1 ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLE 60
Query: 286 LHPQFTTIEYTIPK 299
L Q TTIEY K
Sbjct: 61 L--QSTTIEYITNK 72
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 252
Score = 90.0 bits (223), Expect = 1e-20
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 29/159 (18%)
Query: 304 PLVFLFVVDTCMDEEELGALR---DSLQMSLSLLPK---NALVGLITFGQMVQVHELGCE 357
P + F++D + G L ++L +L +P + ++ + ++ +
Sbjct: 3 PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLD 62
Query: 358 GISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMY 417
+ + L+E PRP + ++AC
Sbjct: 63 SENNEESADQINMMDIADLEEPF------------LPRPN--------SMVVSLKACRQN 102
Query: 418 ATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGT 456
LL + + + G A A L+ G
Sbjct: 103 IETLLTKIPQ-IFQSNLITNFA--LGPALKSAYHLIGGV 138
Score = 47.6 bits (113), Expect = 2e-06
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 23/100 (23%)
Query: 73 GCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPTPPVHKFLQPVEAC 132
+ + + L+E P + + ++AC
Sbjct: 60 PLDSENNEESADQINMMDIADLEEPF--------------------LPRPNSMVVSLKAC 99
Query: 133 EMSLTDLLGGLQKDPWPVHQGKRALRSTGVALSIAVGLLE 172
++ LL + P + G AL A L+
Sbjct: 100 RQNIETLLTKI---PQIFQSNLITNFALGPALKSAYHLIG 136
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 68.7 bits (168), Expect = 4e-15
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 227 LPPLQYE-PLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQ----- 280
P + + C R CR+ +NP + + W CNFC N P Q
Sbjct: 5 PPLNEDGLIVRCRR--CRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSR 62
Query: 281 HQPAELHPQFTTIEYTIPK 299
+ E+ +EY PK
Sbjct: 63 YDRNEIK--CAVMEYMAPK 79
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 103
Score = 67.8 bits (166), Expect = 1e-14
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 13/76 (17%)
Query: 615 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL----------EGGAPVLTEDVSL- 663
DQEAAAV+M R+ V++AE DDG DV+RW DRTLI+L + + L + SL
Sbjct: 1 DQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLY 60
Query: 664 -QVFMEHLKKLAVSST 678
Q F +L++ S
Sbjct: 61 PQ-FTYYLRRSQFLSV 75
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 142
Score = 54.8 bits (132), Expect = 1e-09
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 652 GGAPVLTEDVSLQVFMEHLKKLAVSSTT 679
G VLT+DVSLQ FM HL+++AVS
Sbjct: 115 GSTIVLTDDVSLQNFMTHLQQVAVSGQA 142
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 43.3 bits (102), Expect = 7e-06
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 615 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRL 650
DQ A A V +A D ++++ +
Sbjct: 1 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDI 36
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 32.1 bits (73), Expect = 0.14
Identities = 6/53 (11%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 545 MCTLSPNTTLALFFEIVNQHGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIA 597
T+ + + + A +Q + ++++R+ T+A
Sbjct: 116 FSTMPRDQSYLFEVNVDESIMADYC-----YVQVAVLLSLNNSQRRIRIITLA 163
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 30.4 bits (68), Expect = 0.70
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 494 EYLLVPPWINGLLLEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTT 553
+ + + + + G I P L L G K+ +P T
Sbjct: 136 KTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTA 195
Query: 554 LALFFEIVNQHGAPIPQGGPGCIQFITHYQAPSGE 588
L + ++ + G P PG + + + +G
Sbjct: 196 LYV-ANLIKEAGFP-----PGVVNIVPGFGPTAGA 224
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,520,428
Number of extensions: 120501
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 16
Length of query: 679
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 588
Effective length of database: 1,158,166
Effective search space: 681001608
Effective search space used: 681001608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)