Query psy17262
Match_columns 172
No_of_seqs 123 out of 1838
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 17:29:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.2E-35 9.2E-40 219.2 20.5 155 11-171 102-258 (346)
2 TIGR01645 half-pint poly-U bin 100.0 3E-33 6.5E-38 219.6 19.4 158 14-171 105-269 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.9E-33 1.7E-37 209.6 20.0 151 15-171 2-154 (352)
4 TIGR01622 SF-CC1 splicing fact 100.0 1.4E-31 3.1E-36 209.1 20.4 158 13-170 86-250 (457)
5 KOG0144|consensus 100.0 7E-32 1.5E-36 198.8 12.5 160 7-172 25-189 (510)
6 KOG0145|consensus 100.0 2.2E-31 4.7E-36 185.3 13.5 153 13-171 38-192 (360)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.3E-30 1.6E-34 193.4 21.7 158 14-171 87-334 (352)
8 TIGR01628 PABP-1234 polyadenyl 100.0 3E-30 6.6E-35 206.0 18.7 149 18-171 2-152 (562)
9 KOG0148|consensus 100.0 7.2E-29 1.6E-33 173.3 15.3 150 16-171 62-223 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 3.7E-28 8E-33 194.1 19.3 156 14-171 176-349 (562)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-27 2.4E-32 187.7 19.6 147 15-171 1-157 (481)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.4E-27 3E-32 188.9 19.8 155 11-171 170-360 (509)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.8E-27 1E-31 185.8 20.6 158 14-171 293-487 (509)
14 KOG0131|consensus 100.0 1.1E-27 2.4E-32 158.5 11.2 155 13-172 6-163 (203)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.4E-26 7.3E-31 179.4 20.8 151 14-171 273-459 (481)
16 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-26 2.9E-31 182.0 17.5 145 12-169 54-203 (578)
17 KOG0145|consensus 99.9 1E-26 2.3E-31 162.0 14.5 160 11-170 122-342 (360)
18 KOG0127|consensus 99.9 2.3E-26 4.9E-31 174.2 17.4 153 15-168 116-354 (678)
19 KOG0117|consensus 99.9 6.7E-27 1.5E-31 173.3 14.1 150 13-171 161-316 (506)
20 KOG0117|consensus 99.9 7.4E-25 1.6E-29 162.5 16.8 144 13-168 80-228 (506)
21 KOG0124|consensus 99.9 3.8E-26 8.1E-31 166.1 9.6 154 16-169 113-273 (544)
22 KOG0127|consensus 99.9 4E-25 8.6E-30 167.5 14.9 154 17-171 6-181 (678)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 9.7E-25 2.1E-29 171.5 17.4 149 14-171 136-292 (578)
24 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-23 2.4E-28 164.7 21.2 154 15-172 185-434 (457)
25 KOG0123|consensus 99.9 2.2E-24 4.8E-29 162.5 15.5 135 18-172 3-139 (369)
26 KOG0146|consensus 99.9 1.1E-23 2.3E-28 147.6 12.4 155 15-170 18-349 (371)
27 KOG4205|consensus 99.9 7.2E-24 1.6E-28 155.0 10.4 153 14-166 4-157 (311)
28 KOG0144|consensus 99.9 9.2E-24 2E-28 156.2 10.8 165 6-171 114-489 (510)
29 KOG0109|consensus 99.9 6.2E-23 1.3E-27 145.1 9.8 131 17-171 3-135 (346)
30 KOG0123|consensus 99.9 1.7E-21 3.7E-26 146.9 14.7 149 19-171 79-231 (369)
31 KOG0148|consensus 99.9 4.6E-22 9.9E-27 139.4 10.3 125 13-172 3-128 (321)
32 KOG0147|consensus 99.9 9.5E-23 2.1E-27 154.8 6.8 157 14-170 177-342 (549)
33 KOG0110|consensus 99.9 1.4E-21 3E-26 152.2 13.2 152 18-169 517-676 (725)
34 TIGR01645 half-pint poly-U bin 99.9 3.7E-20 8.1E-25 146.2 20.0 81 14-94 202-283 (612)
35 KOG0105|consensus 99.9 4.4E-20 9.6E-25 123.0 14.8 149 13-171 3-173 (241)
36 KOG4206|consensus 99.8 8E-19 1.7E-23 120.6 14.7 149 14-170 7-205 (221)
37 PLN03134 glycine-rich RNA-bind 99.8 5.3E-19 1.2E-23 117.4 12.9 85 13-97 31-116 (144)
38 KOG4211|consensus 99.8 1.8E-18 3.8E-23 130.3 15.7 154 12-168 6-165 (510)
39 KOG0147|consensus 99.8 4.2E-18 9.2E-23 129.7 10.7 153 15-172 277-514 (549)
40 KOG4212|consensus 99.8 1.3E-16 2.7E-21 119.0 16.4 155 14-170 42-278 (608)
41 PF00076 RRM_1: RNA recognitio 99.7 2.4E-17 5.1E-22 96.5 8.7 69 19-88 1-70 (70)
42 KOG0149|consensus 99.7 1.4E-17 3.1E-22 114.9 8.0 80 15-94 11-90 (247)
43 KOG0122|consensus 99.7 1.3E-16 2.8E-21 110.7 10.8 82 14-95 187-269 (270)
44 KOG0124|consensus 99.7 5.5E-16 1.2E-20 113.5 14.0 82 14-95 208-290 (544)
45 KOG0129|consensus 99.7 1E-15 2.2E-20 116.3 15.5 160 8-167 251-432 (520)
46 PF14259 RRM_6: RNA recognitio 99.7 2E-16 4.3E-21 92.7 8.6 69 19-88 1-70 (70)
47 KOG0125|consensus 99.7 3.6E-16 7.8E-21 112.7 11.1 88 12-101 92-180 (376)
48 KOG1457|consensus 99.7 2.2E-15 4.9E-20 103.5 13.5 157 11-171 29-271 (284)
49 COG0724 RNA-binding proteins ( 99.7 2.6E-15 5.7E-20 109.6 14.9 127 16-142 115-261 (306)
50 PLN03120 nucleic acid binding 99.7 6.2E-16 1.3E-20 110.0 11.0 78 16-96 4-81 (260)
51 PLN03134 glycine-rich RNA-bind 99.7 8.3E-16 1.8E-20 102.1 9.4 68 104-171 31-99 (144)
52 KOG1190|consensus 99.6 1.2E-15 2.6E-20 112.9 9.8 156 6-171 18-211 (492)
53 KOG1548|consensus 99.6 3E-14 6.5E-19 103.5 15.5 155 13-172 131-338 (382)
54 KOG0113|consensus 99.6 3.4E-15 7.4E-20 106.4 10.2 80 14-93 99-179 (335)
55 TIGR01659 sex-lethal sex-letha 99.6 6E-15 1.3E-19 111.0 11.6 82 14-95 191-275 (346)
56 KOG0106|consensus 99.6 1.3E-15 2.7E-20 105.7 7.1 139 17-171 2-156 (216)
57 PLN03121 nucleic acid binding 99.6 6.2E-15 1.4E-19 103.4 10.4 77 15-94 4-80 (243)
58 KOG0121|consensus 99.6 2.1E-15 4.7E-20 94.9 7.1 82 13-94 33-115 (153)
59 PF00076 RRM_1: RNA recognitio 99.6 5.8E-15 1.3E-19 86.3 8.2 61 110-171 1-62 (70)
60 KOG0120|consensus 99.6 1.2E-14 2.7E-19 111.9 11.9 163 9-171 282-477 (500)
61 KOG0114|consensus 99.6 1.6E-14 3.6E-19 87.7 9.4 90 4-96 6-96 (124)
62 smart00362 RRM_2 RNA recogniti 99.6 2.6E-14 5.7E-19 83.4 9.3 70 18-89 1-71 (72)
63 KOG0107|consensus 99.6 2.2E-14 4.8E-19 95.1 8.5 79 14-97 8-87 (195)
64 KOG4207|consensus 99.6 1.1E-14 2.4E-19 98.9 6.6 86 10-95 7-93 (256)
65 smart00360 RRM RNA recognition 99.6 5.4E-14 1.2E-18 81.7 8.6 69 21-89 1-70 (71)
66 KOG0130|consensus 99.5 1.8E-14 3.8E-19 91.7 6.6 83 14-96 70-153 (170)
67 KOG0149|consensus 99.5 3.4E-14 7.3E-19 98.4 7.3 67 103-169 8-75 (247)
68 PF14259 RRM_6: RNA recognitio 99.5 9.2E-14 2E-18 81.3 8.2 60 110-170 1-61 (70)
69 KOG0110|consensus 99.5 1.1E-13 2.5E-18 108.6 10.8 152 13-170 382-582 (725)
70 KOG0126|consensus 99.5 1.9E-15 4.2E-20 100.7 0.8 81 14-94 33-114 (219)
71 PLN03213 repressor of silencin 99.5 8.9E-14 1.9E-18 105.6 9.3 80 12-95 6-88 (759)
72 cd00590 RRM RRM (RNA recogniti 99.5 3.1E-13 6.7E-18 79.2 9.8 73 18-91 1-74 (74)
73 KOG1190|consensus 99.5 1.8E-12 4E-17 96.3 14.6 146 16-170 297-474 (492)
74 KOG0122|consensus 99.5 1.1E-13 2.5E-18 96.3 7.7 65 106-170 188-253 (270)
75 KOG0108|consensus 99.5 1.8E-13 4E-18 104.7 9.6 80 17-96 19-99 (435)
76 KOG1456|consensus 99.5 1.2E-12 2.6E-17 96.3 12.4 152 9-171 24-182 (494)
77 KOG0111|consensus 99.5 9.2E-14 2E-18 95.4 4.7 84 14-97 8-92 (298)
78 KOG0121|consensus 99.4 2.7E-13 5.8E-18 85.6 6.3 65 106-170 35-100 (153)
79 KOG1365|consensus 99.4 3.9E-13 8.5E-18 99.1 8.0 155 14-170 159-346 (508)
80 KOG4211|consensus 99.4 3.7E-12 8.1E-17 96.6 11.0 157 8-167 95-340 (510)
81 KOG0125|consensus 99.4 1.3E-12 2.9E-17 94.5 7.9 67 103-171 92-159 (376)
82 PLN03120 nucleic acid binding 99.4 1.8E-12 3.9E-17 92.5 8.5 61 107-171 4-65 (260)
83 smart00362 RRM_2 RNA recogniti 99.4 3.6E-12 7.8E-17 74.2 8.2 60 109-170 1-61 (72)
84 KOG0113|consensus 99.4 3.7E-12 7.9E-17 91.2 8.6 69 103-171 97-166 (335)
85 KOG4212|consensus 99.4 4.4E-11 9.4E-16 89.9 14.5 78 12-90 211-289 (608)
86 KOG0120|consensus 99.3 4.4E-12 9.5E-17 98.0 8.6 153 13-171 172-354 (500)
87 smart00361 RRM_1 RNA recogniti 99.3 9E-12 1.9E-16 72.8 8.0 60 30-89 2-69 (70)
88 smart00360 RRM RNA recognition 99.3 7.1E-12 1.5E-16 72.6 7.5 59 112-170 1-60 (71)
89 KOG4207|consensus 99.3 3.4E-12 7.4E-17 87.0 6.1 69 103-171 9-78 (256)
90 KOG0114|consensus 99.3 1.7E-11 3.6E-16 74.7 8.1 64 105-171 16-80 (124)
91 PF13893 RRM_5: RNA recognitio 99.3 1.4E-11 3.1E-16 68.8 7.3 55 33-92 1-56 (56)
92 PLN03121 nucleic acid binding 99.3 2.1E-11 4.7E-16 85.8 8.5 60 107-170 5-65 (243)
93 KOG0130|consensus 99.3 1.2E-11 2.6E-16 78.9 6.4 69 102-170 67-136 (170)
94 KOG0132|consensus 99.3 1.7E-11 3.6E-16 97.6 8.5 79 14-98 419-498 (894)
95 cd00590 RRM RRM (RNA recogniti 99.3 4.8E-11 1E-15 69.7 8.5 62 109-171 1-63 (74)
96 KOG0107|consensus 99.3 1.1E-11 2.3E-16 82.5 6.1 60 107-171 10-70 (195)
97 KOG0226|consensus 99.3 1.3E-11 2.8E-16 86.6 6.3 153 19-172 99-256 (290)
98 KOG0415|consensus 99.3 1.5E-11 3.2E-16 90.1 6.7 86 10-95 233-319 (479)
99 KOG4205|consensus 99.3 1.7E-11 3.7E-16 90.3 7.1 149 15-164 96-250 (311)
100 PLN03213 repressor of silencin 99.3 2.5E-11 5.3E-16 92.6 7.9 63 105-171 8-73 (759)
101 KOG0146|consensus 99.2 1.1E-11 2.5E-16 87.6 5.4 88 10-97 279-367 (371)
102 KOG0153|consensus 99.2 3.5E-11 7.7E-16 87.8 8.1 80 9-94 221-302 (377)
103 KOG0111|consensus 99.2 5.5E-12 1.2E-16 86.8 3.0 68 104-171 7-75 (298)
104 KOG0126|consensus 99.2 6.9E-13 1.5E-17 88.6 -1.4 64 108-171 36-100 (219)
105 KOG1456|consensus 99.2 1.8E-09 3.8E-14 79.9 15.4 153 11-170 282-469 (494)
106 KOG0131|consensus 99.2 2.2E-11 4.7E-16 81.5 5.0 63 107-169 9-72 (203)
107 KOG0128|consensus 99.2 4E-13 8.7E-18 107.5 -3.9 132 15-169 666-798 (881)
108 smart00361 RRM_1 RNA recogniti 99.2 8E-11 1.7E-15 68.8 6.8 52 120-171 2-60 (70)
109 COG0724 RNA-binding proteins ( 99.2 9.1E-11 2E-15 85.6 8.4 65 107-171 115-180 (306)
110 KOG0108|consensus 99.2 1E-10 2.3E-15 89.8 6.9 63 108-170 19-82 (435)
111 KOG4454|consensus 99.1 1.1E-11 2.3E-16 85.3 0.8 139 12-168 5-145 (267)
112 KOG4208|consensus 99.1 4.2E-10 9.1E-15 76.9 8.2 83 13-95 46-130 (214)
113 KOG1365|consensus 99.1 6.1E-09 1.3E-13 77.4 12.5 155 13-168 57-226 (508)
114 KOG0109|consensus 99.1 4E-10 8.6E-15 80.7 6.2 78 13-98 75-153 (346)
115 PF13893 RRM_5: RNA recognitio 99.0 1E-09 2.2E-14 61.2 6.4 44 123-171 1-44 (56)
116 KOG4210|consensus 99.0 4.1E-10 8.9E-15 82.7 5.4 154 14-167 86-246 (285)
117 KOG0415|consensus 99.0 6.1E-10 1.3E-14 81.8 5.5 68 104-171 236-304 (479)
118 KOG4661|consensus 99.0 1.7E-09 3.7E-14 84.1 8.0 81 13-93 402-483 (940)
119 KOG4676|consensus 99.0 3.7E-10 8E-15 83.8 4.1 151 17-171 8-212 (479)
120 KOG4660|consensus 99.0 8.2E-10 1.8E-14 85.2 5.7 146 8-165 67-230 (549)
121 KOG0116|consensus 99.0 2.5E-09 5.4E-14 81.9 7.9 81 15-95 287-367 (419)
122 KOG0112|consensus 98.9 8.9E-10 1.9E-14 89.2 4.0 145 11-170 367-513 (975)
123 KOG0533|consensus 98.9 9.7E-09 2.1E-13 73.2 8.7 84 12-96 79-163 (243)
124 KOG4208|consensus 98.9 4.6E-09 1E-13 71.8 6.6 66 105-170 47-114 (214)
125 PF04059 RRM_2: RNA recognitio 98.9 2.5E-08 5.5E-13 61.3 9.0 77 17-93 2-85 (97)
126 KOG4206|consensus 98.8 1.7E-08 3.8E-13 70.0 7.5 62 107-171 9-75 (221)
127 KOG0105|consensus 98.8 7.3E-09 1.6E-13 69.8 5.0 61 106-169 5-66 (241)
128 PF04059 RRM_2: RNA recognitio 98.8 8.3E-08 1.8E-12 59.0 8.1 64 108-171 2-68 (97)
129 KOG4307|consensus 98.8 3E-08 6.6E-13 78.7 7.6 153 13-166 308-494 (944)
130 KOG0132|consensus 98.7 3.5E-08 7.6E-13 79.2 6.2 59 106-170 420-479 (894)
131 KOG4209|consensus 98.7 6.7E-08 1.5E-12 68.9 5.9 84 12-95 97-180 (231)
132 KOG0226|consensus 98.6 7.3E-08 1.6E-12 68.1 4.9 87 8-94 182-269 (290)
133 KOG4661|consensus 98.6 1.4E-07 3.1E-12 73.6 6.5 64 106-169 404-468 (940)
134 KOG0151|consensus 98.5 5.2E-07 1.1E-11 72.0 8.3 80 14-93 172-255 (877)
135 KOG0128|consensus 98.5 6.9E-09 1.5E-13 83.8 -2.6 157 15-171 570-732 (881)
136 KOG4660|consensus 98.5 2.2E-07 4.8E-12 72.2 5.1 65 102-171 70-135 (549)
137 PF11608 Limkain-b1: Limkain b 98.5 1.4E-06 3E-11 51.5 7.1 69 17-95 3-77 (90)
138 KOG0116|consensus 98.5 3.2E-07 6.9E-12 70.5 5.3 61 108-168 289-350 (419)
139 KOG0153|consensus 98.5 5.2E-07 1.1E-11 66.4 6.1 62 101-168 222-284 (377)
140 KOG1457|consensus 98.4 2.6E-06 5.6E-11 59.4 8.2 68 104-171 31-100 (284)
141 KOG2193|consensus 98.4 4.7E-08 1E-12 73.7 -0.4 135 17-170 2-141 (584)
142 PF08777 RRM_3: RNA binding mo 98.4 7.8E-07 1.7E-11 55.9 5.1 54 109-168 3-57 (105)
143 COG5175 MOT2 Transcriptional r 98.4 2.6E-06 5.6E-11 62.8 8.3 110 17-126 115-240 (480)
144 KOG0533|consensus 98.4 1.8E-06 3.9E-11 61.8 7.1 66 104-170 80-146 (243)
145 KOG4209|consensus 98.4 7.4E-07 1.6E-11 63.6 5.0 68 103-171 97-165 (231)
146 KOG0151|consensus 98.3 1.2E-06 2.7E-11 70.0 5.9 69 104-172 171-243 (877)
147 PF08777 RRM_3: RNA binding mo 98.2 5.5E-06 1.2E-10 52.0 6.1 55 17-77 2-56 (105)
148 PF14605 Nup35_RRM_2: Nup53/35 98.1 9.8E-06 2.1E-10 44.3 5.3 53 16-75 1-53 (53)
149 KOG4454|consensus 98.1 1.8E-06 3.9E-11 60.0 2.5 66 104-171 6-72 (267)
150 KOG1995|consensus 98.1 7.9E-06 1.7E-10 60.6 5.6 88 8-95 58-154 (351)
151 PF05172 Nup35_RRM: Nup53/35/4 98.1 2.2E-05 4.8E-10 48.7 6.5 78 14-92 4-89 (100)
152 PF11608 Limkain-b1: Limkain b 98.1 2.4E-05 5.3E-10 46.3 6.2 54 108-171 3-62 (90)
153 KOG4210|consensus 98.0 9.4E-06 2E-10 59.9 4.2 83 13-95 181-264 (285)
154 KOG4849|consensus 98.0 7.7E-06 1.7E-10 60.6 3.6 77 14-90 78-157 (498)
155 PF10309 DUF2414: Protein of u 97.9 0.00011 2.4E-09 41.2 7.1 56 106-168 4-62 (62)
156 KOG2314|consensus 97.9 4.8E-05 1E-09 59.8 6.8 66 105-171 56-128 (698)
157 KOG0106|consensus 97.9 1.1E-05 2.4E-10 56.6 2.9 56 108-171 2-58 (216)
158 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.4E-05 2E-09 40.4 5.7 52 108-165 2-53 (53)
159 KOG1548|consensus 97.8 0.0001 2.2E-09 54.6 6.8 63 108-171 135-206 (382)
160 KOG4307|consensus 97.8 0.00013 2.7E-09 58.9 7.4 76 15-91 866-943 (944)
161 KOG3152|consensus 97.7 2E-05 4.3E-10 56.0 2.4 72 15-86 73-157 (278)
162 KOG1855|consensus 97.6 8E-05 1.7E-09 56.7 4.4 68 103-170 227-308 (484)
163 KOG0129|consensus 97.5 0.00056 1.2E-08 53.4 7.8 82 14-95 368-454 (520)
164 PF08675 RNA_bind: RNA binding 97.3 0.0013 2.7E-08 39.1 5.9 57 12-77 5-61 (87)
165 PF08952 DUF1866: Domain of un 97.3 0.0015 3.3E-08 43.1 6.5 56 32-95 52-107 (146)
166 PF10309 DUF2414: Protein of u 97.2 0.0057 1.2E-07 34.4 7.3 54 15-77 4-61 (62)
167 KOG2314|consensus 97.2 0.00075 1.6E-08 53.3 4.9 76 14-90 56-139 (698)
168 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0014 3.1E-08 40.7 5.1 63 107-169 6-75 (100)
169 KOG0115|consensus 97.1 0.0023 4.9E-08 45.9 6.3 77 78-168 15-92 (275)
170 KOG1995|consensus 97.1 0.001 2.3E-08 49.7 4.6 66 105-170 64-138 (351)
171 KOG1996|consensus 97.0 0.0024 5.2E-08 46.6 5.8 52 121-172 301-353 (378)
172 KOG1855|consensus 96.9 0.0013 2.8E-08 50.3 3.9 70 9-78 224-306 (484)
173 KOG2202|consensus 96.8 0.0006 1.3E-08 48.7 1.7 62 31-93 83-146 (260)
174 PF15023 DUF4523: Protein of u 96.8 0.006 1.3E-07 40.0 6.1 74 13-93 83-160 (166)
175 PF07292 NID: Nmi/IFP 35 domai 96.8 0.002 4.3E-08 38.9 3.6 68 61-128 1-74 (88)
176 PF08675 RNA_bind: RNA binding 96.8 0.015 3.3E-07 34.6 7.1 53 108-169 10-63 (87)
177 PF15023 DUF4523: Protein of u 96.8 0.0098 2.1E-07 39.0 6.6 62 102-170 81-147 (166)
178 KOG4849|consensus 96.7 0.0026 5.7E-08 47.6 4.5 66 104-169 77-145 (498)
179 KOG3152|consensus 96.7 0.0013 2.9E-08 47.0 2.3 66 106-171 73-151 (278)
180 COG5175 MOT2 Transcriptional r 96.6 0.0061 1.3E-07 45.5 5.7 65 108-172 115-189 (480)
181 KOG2202|consensus 96.6 0.00092 2E-08 47.8 1.3 51 121-172 83-134 (260)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.002 4.3E-08 44.4 2.6 83 13-95 4-98 (176)
183 PF07576 BRAP2: BRCA1-associat 96.4 0.099 2.1E-06 33.1 9.2 67 15-83 12-80 (110)
184 KOG2068|consensus 96.4 0.0016 3.4E-08 48.4 1.2 111 16-126 77-200 (327)
185 KOG2416|consensus 96.3 0.0051 1.1E-07 49.1 4.0 80 8-93 436-520 (718)
186 KOG0112|consensus 96.3 0.0066 1.4E-07 50.6 4.7 77 12-94 451-530 (975)
187 KOG2416|consensus 96.1 0.006 1.3E-07 48.7 3.2 62 103-170 440-503 (718)
188 PF07576 BRAP2: BRCA1-associat 95.9 0.21 4.6E-06 31.6 9.1 62 108-171 13-77 (110)
189 PF14111 DUF4283: Domain of un 95.9 0.016 3.4E-07 38.8 4.3 108 27-139 28-138 (153)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.015 3.2E-07 40.1 4.0 65 106-170 6-77 (176)
191 PF10567 Nab6_mRNP_bdg: RNA-re 95.8 0.54 1.2E-05 34.8 11.8 161 9-169 8-212 (309)
192 KOG4676|consensus 95.7 0.011 2.4E-07 45.0 3.2 63 108-170 8-74 (479)
193 KOG2591|consensus 95.6 0.038 8.3E-07 44.0 5.7 70 14-90 173-247 (684)
194 KOG0115|consensus 95.5 0.019 4.1E-07 41.3 3.5 60 17-77 32-91 (275)
195 KOG1996|consensus 95.4 0.094 2E-06 38.6 6.8 64 30-93 300-365 (378)
196 KOG0804|consensus 95.4 0.12 2.7E-06 40.2 7.7 70 13-84 71-142 (493)
197 KOG2135|consensus 95.2 0.013 2.7E-07 45.7 2.0 75 16-96 372-447 (526)
198 KOG4285|consensus 94.9 0.16 3.4E-06 37.6 6.7 73 17-96 198-271 (350)
199 PF11767 SET_assoc: Histone ly 94.7 0.28 6.2E-06 28.0 6.2 54 27-89 11-65 (66)
200 KOG2193|consensus 94.7 0.038 8.3E-07 42.6 3.5 58 108-171 2-60 (584)
201 KOG0804|consensus 93.7 0.39 8.5E-06 37.6 7.0 63 107-171 74-138 (493)
202 PF04847 Calcipressin: Calcipr 92.9 0.51 1.1E-05 32.8 6.0 62 28-95 7-71 (184)
203 PF08952 DUF1866: Domain of un 92.7 0.38 8.2E-06 32.0 4.9 42 121-170 51-92 (146)
204 KOG4285|consensus 92.1 0.65 1.4E-05 34.5 5.9 54 110-169 200-253 (350)
205 KOG2591|consensus 91.3 1.9 4.1E-05 34.9 8.1 56 107-169 175-233 (684)
206 KOG2068|consensus 90.9 0.25 5.5E-06 37.1 2.9 64 108-171 78-148 (327)
207 KOG4574|consensus 90.7 0.13 2.8E-06 43.2 1.4 56 110-171 301-357 (1007)
208 KOG4483|consensus 89.5 2 4.3E-05 33.4 6.6 63 8-77 383-446 (528)
209 COG5638 Uncharacterized conser 87.4 4.7 0.0001 31.5 7.5 43 9-51 139-186 (622)
210 KOG4410|consensus 84.4 5.1 0.00011 29.8 6.2 48 15-68 329-377 (396)
211 PF15513 DUF4651: Domain of un 82.7 4.4 9.5E-05 22.7 4.1 19 31-49 9-27 (62)
212 PF07292 NID: Nmi/IFP 35 domai 80.4 0.9 2E-05 27.5 1.0 26 13-38 49-74 (88)
213 PF03880 DbpA: DbpA RNA bindin 79.3 9.8 0.00021 22.0 5.9 59 25-92 10-74 (74)
214 KOG2253|consensus 77.3 2.4 5.3E-05 34.9 2.8 57 104-169 37-94 (668)
215 KOG4008|consensus 76.1 3 6.4E-05 30.0 2.7 36 11-46 35-70 (261)
216 PF07530 PRE_C2HC: Associated 76.1 9.3 0.0002 21.9 4.3 62 31-94 2-64 (68)
217 TIGR02542 B_forsyth_147 Bacter 75.8 6.2 0.00013 25.1 3.7 114 24-157 11-128 (145)
218 KOG4213|consensus 74.8 5 0.00011 27.7 3.3 60 16-80 111-172 (205)
219 KOG2253|consensus 74.5 3 6.4E-05 34.5 2.6 69 14-91 38-107 (668)
220 KOG4483|consensus 74.2 16 0.00035 28.6 6.2 56 105-167 389-446 (528)
221 KOG2318|consensus 69.1 22 0.00048 29.3 6.2 67 104-170 171-290 (650)
222 KOG4574|consensus 69.0 7.9 0.00017 33.2 3.9 71 19-95 301-374 (1007)
223 PF03468 XS: XS domain; Inter 68.1 12 0.00026 23.9 3.9 46 19-67 11-65 (116)
224 TIGR03636 L23_arch archaeal ri 67.1 23 0.00051 20.8 5.6 56 18-76 15-72 (77)
225 PRK14548 50S ribosomal protein 66.2 26 0.00057 21.0 5.8 56 19-77 23-80 (84)
226 KOG2318|consensus 65.4 34 0.00073 28.3 6.6 74 13-86 171-297 (650)
227 KOG2891|consensus 64.0 9.7 0.00021 28.2 3.2 37 13-49 146-194 (445)
228 KOG3424|consensus 63.6 37 0.0008 21.8 5.6 48 26-74 33-85 (132)
229 smart00596 PRE_C2HC PRE_C2HC d 63.1 21 0.00045 20.6 3.8 62 31-94 2-64 (69)
230 COG5193 LHP1 La protein, small 59.6 4.3 9.4E-05 31.6 0.8 63 104-166 171-244 (438)
231 PF02714 DUF221: Domain of unk 57.8 17 0.00036 27.5 3.8 33 61-95 1-34 (325)
232 PF10567 Nab6_mRNP_bdg: RNA-re 55.6 32 0.0007 25.8 4.6 60 103-162 11-78 (309)
233 COG5193 LHP1 La protein, small 55.6 5.6 0.00012 31.0 0.8 64 14-77 172-245 (438)
234 KOG1295|consensus 54.9 19 0.00041 28.0 3.5 64 14-77 5-71 (376)
235 PF14893 PNMA: PNMA 54.3 11 0.00024 28.9 2.2 52 14-67 16-71 (331)
236 PF11411 DNA_ligase_IV: DNA li 51.3 13 0.00029 18.3 1.5 17 26-42 19-35 (36)
237 PRK01178 rps24e 30S ribosomal 48.4 65 0.0014 20.0 5.2 48 26-74 29-81 (99)
238 KOG2891|consensus 47.3 19 0.00042 26.7 2.5 36 105-140 147-195 (445)
239 KOG4410|consensus 44.9 1E+02 0.0023 23.2 5.8 49 106-159 329-378 (396)
240 KOG2135|consensus 43.0 11 0.00023 30.2 0.7 42 118-165 385-426 (526)
241 COG5584 Predicted small secret 40.2 78 0.0017 19.5 3.9 32 23-54 29-60 (103)
242 KOG0862|consensus 39.0 33 0.00071 24.5 2.5 30 121-158 89-119 (216)
243 PHA01632 hypothetical protein 37.7 45 0.00098 18.2 2.3 21 19-39 19-39 (64)
244 PF01282 Ribosomal_S24e: Ribos 37.6 91 0.002 18.6 6.2 48 26-74 11-63 (84)
245 PF03439 Spt5-NGN: Early trans 35.9 55 0.0012 19.4 2.9 25 146-170 42-66 (84)
246 COG5507 Uncharacterized conser 35.5 51 0.0011 20.4 2.6 23 146-168 64-86 (117)
247 KOG2295|consensus 35.2 4.4 9.6E-05 32.9 -2.4 63 15-77 230-295 (648)
248 PF15407 Spo7_2_N: Sporulation 34.2 28 0.00061 19.9 1.3 25 14-38 25-49 (67)
249 PF10281 Ish1: Putative stress 34.1 45 0.00098 16.4 2.0 17 27-43 3-19 (38)
250 PF11314 DUF3117: Protein of u 33.9 35 0.00075 18.0 1.5 21 1-21 1-21 (51)
251 PF12829 Mhr1: Transcriptional 33.8 61 0.0013 19.8 2.8 57 109-168 15-71 (91)
252 PTZ00071 40S ribosomal protein 33.4 1.4E+02 0.0031 19.6 5.0 48 26-74 34-87 (132)
253 PF15063 TC1: Thyroid cancer p 33.0 33 0.00071 20.1 1.5 29 15-43 24-52 (79)
254 PF00276 Ribosomal_L23: Riboso 31.3 75 0.0016 19.2 3.0 51 19-69 22-84 (91)
255 cd00027 BRCT Breast Cancer Sup 31.2 88 0.0019 16.5 3.4 26 17-42 2-27 (72)
256 cd06257 DnaJ DnaJ domain or J- 30.9 50 0.0011 17.2 2.0 20 21-40 5-24 (55)
257 COG5470 Uncharacterized conser 29.7 1.4E+02 0.0031 18.4 4.7 45 33-77 25-72 (96)
258 KOG2295|consensus 29.2 8 0.00017 31.5 -1.9 60 108-167 232-295 (648)
259 smart00457 MACPF membrane-atta 27.7 58 0.0013 22.6 2.3 22 21-42 30-51 (194)
260 PF00226 DnaJ: DnaJ domain; I 27.2 62 0.0013 17.6 2.0 20 21-40 5-24 (64)
261 smart00271 DnaJ DnaJ molecular 27.1 63 0.0014 17.2 2.0 20 21-40 6-25 (60)
262 CHL00030 rpl23 ribosomal prote 26.2 1.6E+02 0.0035 18.0 5.5 35 18-52 20-56 (93)
263 PF01823 MACPF: MAC/Perforin d 26.1 48 0.001 23.0 1.7 24 21-44 53-79 (212)
264 KOG0156|consensus 25.3 1.8E+02 0.0038 23.8 4.9 62 17-87 33-97 (489)
265 PF08734 GYD: GYD domain; Int 25.3 1.6E+02 0.0036 17.7 5.4 44 121-168 23-67 (91)
266 COG0030 KsgA Dimethyladenosine 24.1 1.4E+02 0.003 22.2 3.7 46 17-78 96-141 (259)
267 PF00403 HMA: Heavy-metal-asso 24.0 1.3E+02 0.0028 16.1 6.3 53 110-168 2-59 (62)
268 COG3254 Uncharacterized conser 23.7 2E+02 0.0043 18.1 5.1 43 121-166 27-69 (105)
269 COG0150 PurM Phosphoribosylami 23.4 51 0.0011 25.4 1.4 53 114-170 269-321 (345)
270 PF13600 DUF4140: N-terminal d 23.1 33 0.00071 21.1 0.4 34 15-50 22-57 (104)
271 PF10915 DUF2709: Protein of u 22.4 1.8E+02 0.0038 20.6 3.7 61 63-130 47-116 (238)
272 COG2004 RPS24A Ribosomal prote 20.9 2.3E+02 0.0051 17.9 5.3 47 26-73 30-81 (107)
273 PF13820 Nucleic_acid_bd: Puta 20.8 2.5E+02 0.0055 18.9 4.2 56 110-168 7-65 (149)
274 COG5638 Uncharacterized conser 20.2 1.8E+02 0.0039 23.2 3.8 38 102-139 141-184 (622)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.2e-35 Score=219.18 Aligned_cols=155 Identities=25% Similarity=0.391 Sum_probs=142.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.+....++|||+|||+++|+++|+++|+.||+|.+++|+.++.++.++|||||+|.++++|+.|++. ++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3456789999999999999999999999999999999999988999999999999999999999987 899999999999
Q ss_pred eecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 90 KRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.++.+... .....+|||+|||. +++++|+++|++||.|..++++.+..++.++|+|||+|.+.++|++|++.|
T Consensus 182 ~~a~p~~~------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 182 SYARPGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred eccccccc------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 98765432 12345899999999 999999999999999999999999989999999999999999999999999
Q ss_pred CCC
Q psy17262 169 NIE 171 (172)
Q Consensus 169 ~~~ 171 (172)
|+.
T Consensus 256 ng~ 258 (346)
T TIGR01659 256 NNV 258 (346)
T ss_pred CCC
Confidence 975
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3e-33 Score=219.62 Aligned_cols=158 Identities=19% Similarity=0.467 Sum_probs=140.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||+++++++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4668999999999999999999999999999999999999999999999999999999999987 899999999999865
Q ss_pred CCCCCCC-----CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 93 VPRDEIG-----KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 93 ~~~~~~~-----~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
....... ........++|||+|||. +++++|+++|+.||.|.++++.++..++.++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 4322111 011223457999999999 9999999999999999999999999899999999999999999999999
Q ss_pred HhCCC
Q psy17262 167 KYNIE 171 (172)
Q Consensus 167 ~~~~~ 171 (172)
.||+.
T Consensus 265 amNg~ 269 (612)
T TIGR01645 265 SMNLF 269 (612)
T ss_pred HhCCC
Confidence 99963
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.9e-33 Score=209.64 Aligned_cols=151 Identities=24% Similarity=0.474 Sum_probs=139.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
+..+|||+|||+++++++|+++|+.||+|.+++++.++.++.++|||||+|.++++|..|++. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 568999999999999999999999999999999999988999999999999999999999987 8899999999999886
Q ss_pred CCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.... ....+|||+|||. +++++|+.+|+.||.|..+.++.+..++.++|+|||+|.+.++|++|+..|||.
T Consensus 82 ~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~ 154 (352)
T TIGR01661 82 PSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGT 154 (352)
T ss_pred ccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 54322 2345899999999 999999999999999999999998888899999999999999999999999975
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.4e-31 Score=209.07 Aligned_cols=158 Identities=27% Similarity=0.479 Sum_probs=141.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
....++|||+|||..+++++|+++|+.||.|..++++.++.++.++|+|||+|.+.++|.+||..++..+.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999876
Q ss_pred CCCCCCCC------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 93 VPRDEIGK------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 93 ~~~~~~~~------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
........ .......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 54322111 11122368999999999 999999999999999999999999988899999999999999999999
Q ss_pred HHhCC
Q psy17262 166 CKYNI 170 (172)
Q Consensus 166 ~~~~~ 170 (172)
..|||
T Consensus 246 ~~l~g 250 (457)
T TIGR01622 246 EVMNG 250 (457)
T ss_pred HhcCC
Confidence 99997
No 5
>KOG0144|consensus
Probab=99.98 E-value=7e-32 Score=198.81 Aligned_cols=160 Identities=28% Similarity=0.492 Sum_probs=142.1
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccCC
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDG 84 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~ 84 (172)
+..+..+.+.-.+||+-||..++|.||+++|++||.|.+|.+++++.|+.++|+|||.|.+.++|.+|+.. +...+.|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 33444456778899999999999999999999999999999999999999999999999999999999988 5566766
Q ss_pred --eEEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHH
Q psy17262 85 --RVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161 (172)
Q Consensus 85 --~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a 161 (172)
++|.|++++...++. ...++|||+-|+. +++.+++++|++||.|+.+.|+++.. +.+||||||.|++.|.|
T Consensus 105 ~~~pvqvk~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMA 178 (510)
T ss_pred CCcceeecccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHH
Confidence 789999887654443 3457899999999 99999999999999999999999974 89999999999999999
Q ss_pred HHHHHHhCCCC
Q psy17262 162 DKIVCKYNIEF 172 (172)
Q Consensus 162 ~~A~~~~~~~~ 172 (172)
..|++.|||.+
T Consensus 179 ~~Aika~ng~~ 189 (510)
T KOG0144|consen 179 VAAIKALNGTQ 189 (510)
T ss_pred HHHHHhhccce
Confidence 99999999864
No 6
>KOG0145|consensus
Probab=99.98 E-value=2.2e-31 Score=185.32 Aligned_cols=153 Identities=25% Similarity=0.467 Sum_probs=144.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
.+....|.|..||..+|+++++.+|...|+|++|++++++.+|.+.||+||.|-++++|++|+.. ++..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45667899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+.|..+..+. ..|||++||. ++..+|.++|++||.|..-+++.|+.++.+||.+||+|+..++|..|+..|||
T Consensus 118 ARPSs~~Ik~------aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 118 ARPSSDSIKD------ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred ccCChhhhcc------cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 9887655443 3799999999 99999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy17262 171 E 171 (172)
Q Consensus 171 ~ 171 (172)
+
T Consensus 192 ~ 192 (360)
T KOG0145|consen 192 Q 192 (360)
T ss_pred C
Confidence 6
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=7.3e-30 Score=193.44 Aligned_cols=158 Identities=22% Similarity=0.409 Sum_probs=135.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEEEee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVETK 90 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i~v~ 90 (172)
...++|||+|||+.+++++|+++|+.||.+..+.++.+..++.++|+|||+|.+.++|+.|++. ++..+.| ..+.+.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 3567899999999999999999999999999999999887888999999999999999999988 7777766 567777
Q ss_pred ecCCCCCCCC----------------------------------------------------------------------
Q psy17262 91 RAVPRDEIGK---------------------------------------------------------------------- 100 (172)
Q Consensus 91 ~~~~~~~~~~---------------------------------------------------------------------- 100 (172)
++........
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 7643321000
Q ss_pred ----------------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHH
Q psy17262 101 ----------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163 (172)
Q Consensus 101 ----------------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 163 (172)
.......++|||+|||. +++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00011123699999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q psy17262 164 IVCKYNIE 171 (172)
Q Consensus 164 A~~~~~~~ 171 (172)
|+..|||.
T Consensus 327 Ai~~lnG~ 334 (352)
T TIGR01661 327 AILSLNGY 334 (352)
T ss_pred HHHHhCCC
Confidence 99999985
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3e-30 Score=205.99 Aligned_cols=149 Identities=24% Similarity=0.510 Sum_probs=134.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCCC
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~~ 96 (172)
+|||+|||+++||++|+++|+.||+|.+|++.++..|++++|||||+|.+.++|++|++. +...+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999998999999999999999999999988 7778999999999875432
Q ss_pred CCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 97 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 97 ~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.. ......+|||+|||. +++++|+++|+.||.|..+++..+. ++.++|||||+|.+.++|.+|++.+||.
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~ 152 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGM 152 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhccc
Confidence 21 122345799999999 9999999999999999999998875 5778999999999999999999999875
No 9
>KOG0148|consensus
Probab=99.96 E-value=7.2e-29 Score=173.35 Aligned_cols=150 Identities=25% Similarity=0.506 Sum_probs=134.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~ 94 (172)
.-.|+|+.|.+.++-++|++.|.+||+|.+.+++++..|++++||+||.|...++|++|+.. ++.=|.+|.|+..|++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44688999999999999999999999999999999999999999999999999999999999 88889999999999987
Q ss_pred CCCCCC----------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHH
Q psy17262 95 RDEIGK----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDK 163 (172)
Q Consensus 95 ~~~~~~----------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 163 (172)
+..... ........++|++|++. +++++|++.|++||.|..+++..+ +|||||+|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 763221 12233456899999999 999999999999999999999865 5799999999999999
Q ss_pred HHHHhCCC
Q psy17262 164 IVCKYNIE 171 (172)
Q Consensus 164 A~~~~~~~ 171 (172)
|+..+|+.
T Consensus 216 AIv~mNnt 223 (321)
T KOG0148|consen 216 AIVQMNNT 223 (321)
T ss_pred HHHHhcCc
Confidence 99999874
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.7e-28 Score=194.05 Aligned_cols=156 Identities=28% Similarity=0.539 Sum_probs=137.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC----CeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID----GRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~----~~~i~ 88 (172)
...++|||+|||+++|+++|+++|+.||.|.++.+..+. ++.++|+|||+|.+.++|..|++. ++..+. |..+.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 456789999999999999999999999999999999886 788999999999999999999998 888888 99999
Q ss_pred eeecCCCCCCC------------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEe
Q psy17262 89 TKRAVPRDEIG------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEF 155 (172)
Q Consensus 89 v~~~~~~~~~~------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f 155 (172)
|.++..+.... .........+|||+||+. +++++|+++|+.||.|.+++++.+ .++.++|+|||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 98876554331 011133456799999999 999999999999999999999998 5789999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q psy17262 156 NDYDVVDKIVCKYNIE 171 (172)
Q Consensus 156 ~~~~~a~~A~~~~~~~ 171 (172)
.+.++|.+|+..+||.
T Consensus 334 ~~~~~A~~A~~~~~g~ 349 (562)
T TIGR01628 334 SNPEEANRAVTEMHGR 349 (562)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999999974
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.1e-27 Score=187.73 Aligned_cols=147 Identities=13% Similarity=0.174 Sum_probs=125.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCCeEEEeee
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVETKR 91 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~i~v~~ 91 (172)
+++.|||+|||+++++++|+++|++||.|.++.++. ++|+|||+|.+.++|+.|+.. ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 579999999999999999999999999999999985 358999999999999999985 57889999999999
Q ss_pred cCCCCCCCCC------ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q psy17262 92 AVPRDEIGKP------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 92 ~~~~~~~~~~------~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A 164 (172)
+......... .......+|+|.||+. +++++|+++|++||.|.++.+.++.. +++|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 8654321111 1112334799999998 99999999999999999999876532 35899999999999999
Q ss_pred HHHhCCC
Q psy17262 165 VCKYNIE 171 (172)
Q Consensus 165 ~~~~~~~ 171 (172)
++.|||.
T Consensus 151 ~~~Lng~ 157 (481)
T TIGR01649 151 KAALNGA 157 (481)
T ss_pred HHHhcCC
Confidence 9999985
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.4e-27 Score=188.88 Aligned_cols=155 Identities=19% Similarity=0.423 Sum_probs=127.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhc------------CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcC
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQW------------GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~------------G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 78 (172)
......++|||+|||+.+|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|+.||+.+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 344678999999999999999999999975 23333333 336799999999999999999778
Q ss_pred CCccCCeEEEeeecCCCCCCC-----------------------CCccccccceEEEeCCCC-CCHHHHHHHHhccccee
Q psy17262 79 PHNIDGRVVETKRAVPRDEIG-----------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE 134 (172)
Q Consensus 79 ~~~~~~~~i~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~ 134 (172)
+..+.|..|.|.......... ........++|||+|||. +++++|+++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 999999999997543221000 001123457899999999 99999999999999999
Q ss_pred EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 135 SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 135 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++.+..++.++|||||+|.+.++|..|+..|||.
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~ 360 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK 360 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 9999999889999999999999999999999999874
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4.8e-27 Score=185.81 Aligned_cols=158 Identities=18% Similarity=0.347 Sum_probs=132.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|++. ++..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999999988999999999999999999999987 899999999999887
Q ss_pred CCCCCCCC----------------------CccccccceEEEeCCCC---C--------CHHHHHHHHhcccceeEEEEe
Q psy17262 93 VPRDEIGK----------------------PEANATVKKMFVGGLKD---Q--------EEDDLREYFSQFGTIESVNMV 139 (172)
Q Consensus 93 ~~~~~~~~----------------------~~~~~~~~~l~v~~l~~---~--------~~~~l~~~f~~~g~v~~~~~~ 139 (172)
........ .....+.+.|++.|+.. + ..++|+++|++||.|..+.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54322110 01123567889999864 1 125799999999999999998
Q ss_pred ecC---CCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 140 TNK---ETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 140 ~~~---~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++. .++.+.|+|||+|.+.++|++|+..|||.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 752 33556789999999999999999999985
No 14
>KOG0131|consensus
Probab=99.95 E-value=1.1e-27 Score=158.48 Aligned_cols=155 Identities=25% Similarity=0.495 Sum_probs=139.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
-....+|||+||+..++++.|.++|-+.|+|.++++++++.+...+||||++|.++++|+.|++- +...+.|++|++..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34668999999999999999999999999999999999999999999999999999999999998 88899999999998
Q ss_pred cCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 92 AVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
+... +.......++||+||.. +++..|+..|+.||.+.. -++++++.|+.++|+|||.|.+.|.+.+|+..+|
T Consensus 86 as~~-----~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 86 ASAH-----QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred cccc-----cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 7611 11222236899999998 999999999999998877 4789999999999999999999999999999999
Q ss_pred CCC
Q psy17262 170 IEF 172 (172)
Q Consensus 170 ~~~ 172 (172)
|++
T Consensus 161 gq~ 163 (203)
T KOG0131|consen 161 GQY 163 (203)
T ss_pred cch
Confidence 975
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=3.4e-26 Score=179.36 Aligned_cols=151 Identities=13% Similarity=0.268 Sum_probs=126.6
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
.++++|||+|||+ .+++++|+++|+.||.|.+++++.+ .+|+|||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 6999999999999999999999875 369999999999999999987 89999999999987
Q ss_pred cCCCCCCCC-------------------------C------ccccccceEEEeCCCC-CCHHHHHHHHhcccc--eeEEE
Q psy17262 92 AVPRDEIGK-------------------------P------EANATVKKMFVGGLKD-QEEDDLREYFSQFGT--IESVN 137 (172)
Q Consensus 92 ~~~~~~~~~-------------------------~------~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~--v~~~~ 137 (172)
+........ . ....+..+|||+|||. +++++|+++|+.||. +..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 753311000 0 0012456899999999 999999999999998 88888
Q ss_pred EeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 138 ~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.... +..+++|||+|.+.++|.+|+..||+.
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCC
Confidence 76543 235789999999999999999999974
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.3e-26 Score=181.99 Aligned_cols=145 Identities=24% Similarity=0.460 Sum_probs=122.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC-CeEEEe
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVET 89 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-~~~i~v 89 (172)
.+...++|||+|||++++|++|+++|+.||.|.+++++.+ .++.++|||||+|.+.++|+.|++. ++..+. |+.+.+
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3556799999999999999999999999999999999999 5899999999999999999999998 667664 676666
Q ss_pred eecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccc-eeEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 90 KRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
..+. ..++|||+|||. +++++|.+.|++++. +..+.+. .....+.++|||||+|.+.++|.+|+.
T Consensus 133 ~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 133 CISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred cccc------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 5442 246899999999 999999999999863 4444332 333456789999999999999999998
Q ss_pred HhC
Q psy17262 167 KYN 169 (172)
Q Consensus 167 ~~~ 169 (172)
.++
T Consensus 201 kL~ 203 (578)
T TIGR01648 201 KLM 203 (578)
T ss_pred Hhh
Confidence 775
No 17
>KOG0145|consensus
Probab=99.95 E-value=1e-26 Score=162.03 Aligned_cols=160 Identities=23% Similarity=0.410 Sum_probs=138.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEE
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVV 87 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i 87 (172)
.+......|||.+||..+|..+|.++|++||.|.--++..+..|+.++|.+||.|....+|+.|+.. ++..-.| .+|
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 3445677899999999999999999999999999889998888999999999999999999999998 7776665 578
Q ss_pred EeeecCCCCCCC---------------------------------------------------------CCccccccceE
Q psy17262 88 ETKRAVPRDEIG---------------------------------------------------------KPEANATVKKM 110 (172)
Q Consensus 88 ~v~~~~~~~~~~---------------------------------------------------------~~~~~~~~~~l 110 (172)
.|+++....... -+.......++
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 888776442210 11222335789
Q ss_pred EEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 111 FVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 111 ~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
||.||.. .++..|+++|.+||.|.++++++|..|++.+||+||.+.+.++|..|+..|||
T Consensus 282 FvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG 342 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 342 (360)
T ss_pred EEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC
Confidence 9999988 99999999999999999999999999999999999999999999999999997
No 18
>KOG0127|consensus
Probab=99.95 E-value=2.3e-26 Score=174.20 Aligned_cols=153 Identities=28% Similarity=0.492 Sum_probs=135.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
+.-+|+|+|||+.|.+++|+.+|+.||.|.++.|++.+.++.+ |+|||.|....+|..|++. ++..|.|++|.|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999988755555 9999999999999999999 9999999999999998
Q ss_pred CCCCCC--------------------------------------------------------------------------
Q psy17262 94 PRDEIG-------------------------------------------------------------------------- 99 (172)
Q Consensus 94 ~~~~~~-------------------------------------------------------------------------- 99 (172)
++....
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 764210
Q ss_pred --------C--CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 100 --------K--PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 100 --------~--~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
. +.+.....+|||+|||. ++++.|.+.|+.||.|.+..++.++.|+.+.|.|||.|.+..+|+.+|...
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0 00011236899999999 999999999999999999999999999999999999999999999999865
No 19
>KOG0117|consensus
Probab=99.95 E-value=6.7e-27 Score=173.25 Aligned_cols=150 Identities=24% Similarity=0.434 Sum_probs=132.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCC-CCccceEEEEECCHHHHHHHHhc---CCCccCCeEE
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVV 87 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~i 87 (172)
+..+++|||+|||.+.++++|.+.+++.++ |.++.+...+.+ .+++|+|||+|.+...|..|... ....++|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 457899999999999999999999999997 778888777644 34899999999999998888876 4578899999
Q ss_pred EeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 88 ETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 88 ~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
+|.|+.+......+ .....+.|||+||+. +|++.|+++|+.||.|.+++.++| ||||.|.+.++|.+|+.
T Consensus 241 tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 99999988766554 566778999999999 999999999999999999987755 89999999999999999
Q ss_pred HhCCC
Q psy17262 167 KYNIE 171 (172)
Q Consensus 167 ~~~~~ 171 (172)
.+||.
T Consensus 312 ~~ngk 316 (506)
T KOG0117|consen 312 ETNGK 316 (506)
T ss_pred HhcCc
Confidence 99973
No 20
>KOG0117|consensus
Probab=99.93 E-value=7.4e-25 Score=162.51 Aligned_cols=144 Identities=22% Similarity=0.467 Sum_probs=126.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc-CCeEEEee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI-DGRVVETK 90 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~-~~~~i~v~ 90 (172)
+...+.|||+.||.++.|++|..+|++.|+|-+++++.++.+|.++|||||+|.+.+.|+.|+.. ++.+| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 36778999999999999999999999999999999999999999999999999999999999998 77777 57777777
Q ss_pred ecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHH
Q psy17262 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTN-KETGAKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~A~~~ 167 (172)
.+.. .++|||+|+|. +++++|.+.+.+.+ .|..+.+... .+..++||||||+|.+...|..|.++
T Consensus 160 ~Sva------------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 160 VSVA------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred Eeee------------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh
Confidence 5533 36899999999 99999999999876 5666655443 34578999999999999999999886
Q ss_pred h
Q psy17262 168 Y 168 (172)
Q Consensus 168 ~ 168 (172)
|
T Consensus 228 l 228 (506)
T KOG0117|consen 228 L 228 (506)
T ss_pred c
Confidence 5
No 21
>KOG0124|consensus
Probab=99.93 E-value=3.8e-26 Score=166.06 Aligned_cols=154 Identities=19% Similarity=0.486 Sum_probs=139.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~ 94 (172)
-++|||+.|.++..|+.|+..|.+||+|.+|.+.-++.|++++|+|||+|+-++.|+.|++. ++..+.|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999 99999999999985543
Q ss_pred CCCCC-----CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 95 RDEIG-----KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 95 ~~~~~-----~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
..... .+.+....+++||..+.. .++++|+.+|+-||+|.+|.+-+++.++..+||+|++|.+.++...|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 33221 123345678999999977 999999999999999999999999999999999999999999999999988
Q ss_pred C
Q psy17262 169 N 169 (172)
Q Consensus 169 ~ 169 (172)
|
T Consensus 273 N 273 (544)
T KOG0124|consen 273 N 273 (544)
T ss_pred c
Confidence 7
No 22
>KOG0127|consensus
Probab=99.93 E-value=4e-25 Score=167.53 Aligned_cols=154 Identities=25% Similarity=0.477 Sum_probs=136.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
.+|||++||++++.++|.++|+.+|+|..+.++.+..++.++||+||+|.-.+++++|+.. .+..+.|+.+.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999999999998899999999999999999999999 778999999999888755
Q ss_pred CCCC--------------------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEE
Q psy17262 96 DEIG--------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIE 154 (172)
Q Consensus 96 ~~~~--------------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~ 154 (172)
.... ....+.+..+|.|+|||+ +...+|+.+|+.||.|..+.|++..++.. +|||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCc-cceEEEE
Confidence 4322 011133467899999999 99999999999999999999997776544 5999999
Q ss_pred eCCHHHHHHHHHHhCCC
Q psy17262 155 FNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 155 f~~~~~a~~A~~~~~~~ 171 (172)
|.+..+|..|+..+|+-
T Consensus 165 fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGN 181 (678)
T ss_pred EeeHHHHHHHHHhccCc
Confidence 99999999999999973
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=9.7e-25 Score=171.55 Aligned_cols=149 Identities=28% Similarity=0.476 Sum_probs=122.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEec-CCCCCccceEEEEECCHHHHHHHHhc-C--CCccCCeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~~~~~~i~ 88 (172)
...++|||+|||+++++++|.+.|+.++. +.++.+... ...+.++|||||+|.+.++|..|+.. + ...++|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45789999999999999999999999974 444444332 23456899999999999999999976 2 3468899999
Q ss_pred eeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcc--cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
|.|+.+..... .......++|||+||+. +++++|+++|+.| |.|..+.++ +++|||+|.+.++|.+|+
T Consensus 216 VdwA~p~~~~d-~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVD-EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeeccccccc-ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 99987764332 22234457899999999 9999999999999 999999765 348999999999999999
Q ss_pred HHhCCC
Q psy17262 166 CKYNIE 171 (172)
Q Consensus 166 ~~~~~~ 171 (172)
+.||+.
T Consensus 287 ~~lnG~ 292 (578)
T TIGR01648 287 DELNGK 292 (578)
T ss_pred HHhCCC
Confidence 999974
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=1.1e-23 Score=164.68 Aligned_cols=154 Identities=25% Similarity=0.473 Sum_probs=128.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|++. ++..+.|+.|.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999999988889999999999999999999987 8899999999999843
Q ss_pred CCCCC-----------------------------------C---------------------------------------
Q psy17262 94 PRDEI-----------------------------------G--------------------------------------- 99 (172)
Q Consensus 94 ~~~~~-----------------------------------~--------------------------------------- 99 (172)
..... .
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence 21000 0
Q ss_pred ----------CCccccccceEEEeCCCC-CC----------HHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCH
Q psy17262 100 ----------KPEANATVKKMFVGGLKD-QE----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (172)
Q Consensus 100 ----------~~~~~~~~~~l~v~~l~~-~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 158 (172)
........++|+|.|+.. .+ .++|++.|++||.|..+.+.. ....|++||+|.+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSV 420 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCH
Confidence 000123457788999854 22 368999999999999998863 34568999999999
Q ss_pred HHHHHHHHHhCCCC
Q psy17262 159 DVVDKIVCKYNIEF 172 (172)
Q Consensus 159 ~~a~~A~~~~~~~~ 172 (172)
++|.+|+..|||.+
T Consensus 421 e~A~~A~~~lnGr~ 434 (457)
T TIGR01622 421 DAALAAFQALNGRY 434 (457)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999999974
No 25
>KOG0123|consensus
Probab=99.93 E-value=2.2e-24 Score=162.49 Aligned_cols=135 Identities=21% Similarity=0.453 Sum_probs=125.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCCC
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRD 96 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~~ 96 (172)
.|||+ +++|+..|.++|+++|++.++++.++. | +.|||||.|.++++|++||.. +...+.|+++.+-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 57888 999999999999999999999999998 6 999999999999999999999 8888999999999987554
Q ss_pred CCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 97 EIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 97 ~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
.. +||.||+. ++...|...|+.||.|.++++..+... ++|| ||+|+++++|.+|+..+||.+
T Consensus 77 ~~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 77 SL-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred ce-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 33 99999999 999999999999999999999998753 8999 999999999999999999975
No 26
>KOG0146|consensus
Probab=99.91 E-value=1.1e-23 Score=147.62 Aligned_cols=155 Identities=21% Similarity=0.409 Sum_probs=135.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C-CCccCC--eEEEee
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R-PHNIDG--RVVETK 90 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~-~~~~~~--~~i~v~ 90 (172)
+.|.|||+.|...-.|+|++.+|..||++.++.+.+.+ .+.+||+|||.|.+..+|+.|+.. + ...+.| ..+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999988 888999999999999999999998 4 355665 578888
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q psy17262 91 RAVPRDEIG----------------------------------------------------------------------- 99 (172)
Q Consensus 91 ~~~~~~~~~----------------------------------------------------------------------- 99 (172)
+++..+++.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 887554310
Q ss_pred --------------------------------------------------------------------------------
Q psy17262 100 -------------------------------------------------------------------------------- 99 (172)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (172)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ---------------------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCC
Q psy17262 100 ---------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND 157 (172)
Q Consensus 100 ---------------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~ 157 (172)
..........|||..||. ..+.+|.++|-+||.|.+.++.-|+.|+.+++++||.|+|
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 011122346899999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy17262 158 YDVVDKIVCKYNI 170 (172)
Q Consensus 158 ~~~a~~A~~~~~~ 170 (172)
+.+|+.|+..|||
T Consensus 337 p~SaQaAIqAMNG 349 (371)
T KOG0146|consen 337 PASAQAAIQAMNG 349 (371)
T ss_pred chhHHHHHHHhcc
Confidence 9999999999997
No 27
>KOG4205|consensus
Probab=99.91 E-value=7.2e-24 Score=155.01 Aligned_cols=153 Identities=46% Similarity=0.837 Sum_probs=144.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
.+.+.++|++|+++++++.|+++|..||+|.++.+.+++.+++++|++||+|.+++...+++....+.++|+.|.+..+.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 37899999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
+.............+++||+++|. ++++++++.|..||.|..+.++.|..+..++|++||.|.+.+++.+++.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 988777766666888999999999 9999999999999999999999999999999999999999999988764
No 28
>KOG0144|consensus
Probab=99.91 E-value=9.2e-24 Score=156.19 Aligned_cols=165 Identities=22% Similarity=0.388 Sum_probs=141.5
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CC-CccC
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNID 83 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~-~~~~ 83 (172)
.+++...-...+.|||+.|+..++|.+++++|++||.|++|.|.++. .+.+||+|||.|.+.+.|..|++. ++ ..+.
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 34444433457899999999999999999999999999999999998 889999999999999999999998 44 4566
Q ss_pred C--eEEEeeecCCCCCCC--------------------------------------------------------------
Q psy17262 84 G--RVVETKRAVPRDEIG-------------------------------------------------------------- 99 (172)
Q Consensus 84 ~--~~i~v~~~~~~~~~~-------------------------------------------------------------- 99 (172)
| .++.|++++++++..
T Consensus 193 Gcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~ 272 (510)
T KOG0144|consen 193 GCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNAT 272 (510)
T ss_pred cCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchh
Confidence 6 589999998775420
Q ss_pred --------------------------------------------------------------------------------
Q psy17262 100 -------------------------------------------------------------------------------- 99 (172)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (172)
T Consensus 273 ~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a 352 (510)
T KOG0144|consen 273 QLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMA 352 (510)
T ss_pred HHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccc
Confidence
Q ss_pred ----------------------------------------------------------------CCccccccceEEEeCC
Q psy17262 100 ----------------------------------------------------------------KPEANATVKKMFVGGL 115 (172)
Q Consensus 100 ----------------------------------------------------------------~~~~~~~~~~l~v~~l 115 (172)
.+........+||.+|
T Consensus 353 ~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhl 432 (510)
T KOG0144|consen 353 GAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHL 432 (510)
T ss_pred cccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeC
Confidence 0111122357999999
Q ss_pred CC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 116 KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 116 ~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
|. ..+.+|-..|.+||.|.+.++..|+.|+.+++|+||.|++..+|+.|+..|||.
T Consensus 433 Pqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngf 489 (510)
T KOG0144|consen 433 PQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGF 489 (510)
T ss_pred chhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcch
Confidence 99 999999999999999999999999999999999999999999999999999974
No 29
>KOG0109|consensus
Probab=99.89 E-value=6.2e-23 Score=145.09 Aligned_cols=131 Identities=22% Similarity=0.530 Sum_probs=119.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
-.|||+|||.++++.+|+.+|++||+|++|.|+++ ||||..++...|..|+.. ++..|.|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36899999999999999999999999999999985 999999999999999997 899999999999977654
Q ss_pred CCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 96 DEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 96 ~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+..+.+|+|+|+.. .+.++|++.|++||.|..+.++.+ |+||.|+-.++|..|+..||+.
T Consensus 75 --------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 75 --------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred --------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccc
Confidence 44567899999988 999999999999999999999865 8999999999999999888763
No 30
>KOG0123|consensus
Probab=99.88 E-value=1.7e-21 Score=146.95 Aligned_cols=149 Identities=24% Similarity=0.491 Sum_probs=134.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCCCC
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDE 97 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~~~ 97 (172)
|||.||+++++-.+|.+.|+.||+|++|++..+. .| ++|| ||+|.++++|..|++. ++..+.|+.|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999986 45 9999 9999999999999999 99999999999988877766
Q ss_pred CCCCcc--ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 98 IGKPEA--NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 98 ~~~~~~--~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.. ......+++.+++. .+++.|...|+.+|.|..+.++.+.. +.+++|+||+|.++++|..|+..+++.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCC
Confidence 544333 34556789999998 99999999999999999999998875 558999999999999999999999975
No 31
>KOG0148|consensus
Probab=99.88 E-value=4.6e-22 Score=139.45 Aligned_cols=125 Identities=22% Similarity=0.474 Sum_probs=107.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
++..|+|||+||..++||+-|..+|+..|++.+++++.+ .++|.|+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 456799999999999999999999999999999999875 3555566
Q ss_pred CCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 93 VPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.... ..+.......--+||+.|.. ++.++|++.|.+||+|...++++|..|++++||+||.|-+.++|++|++.|||+
T Consensus 49 ~~p~-nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 49 TAPG-NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred cCcc-cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 5542 22222222244689999988 999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy17262 172 F 172 (172)
Q Consensus 172 ~ 172 (172)
+
T Consensus 128 W 128 (321)
T KOG0148|consen 128 W 128 (321)
T ss_pred e
Confidence 5
No 32
>KOG0147|consensus
Probab=99.87 E-value=9.5e-23 Score=154.77 Aligned_cols=157 Identities=27% Similarity=0.443 Sum_probs=138.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
...|+|++--|+-..++.+|.+||+.+|.|..+.++.++-++.++|.|||+|.+.++...|+...+..+.|.+|.|+...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 45678888888889999999999999999999999999999999999999999999999999889999999999998654
Q ss_pred CCCCC--------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q psy17262 94 PRDEI--------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 94 ~~~~~--------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A 164 (172)
..... .......+..+|||+||.. +++++|+.+|++||.|..+.+..+..||.++||+|++|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 33211 1111233445599999999 99999999999999999999999998999999999999999999999
Q ss_pred HHHhCC
Q psy17262 165 VCKYNI 170 (172)
Q Consensus 165 ~~~~~~ 170 (172)
+..|||
T Consensus 337 ~e~lng 342 (549)
T KOG0147|consen 337 LEQLNG 342 (549)
T ss_pred HHHhcc
Confidence 999998
No 33
>KOG0110|consensus
Probab=99.87 E-value=1.4e-21 Score=152.23 Aligned_cols=152 Identities=24% Similarity=0.468 Sum_probs=129.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC---CccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
.|||.||+++.|.+++...|...|.|..+.|...+... .|.|||||+|.++++|++|+.. ++..++|+.|.+..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999887655221 2669999999999999999999 7899999999999988
Q ss_pred CCCC--CCCCc-cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 94 PRDE--IGKPE-ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 94 ~~~~--~~~~~-~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.+.. .++.. .......|+|+|+|. .+..+++++|..||.+..++++.....+..+|+|||+|-++.+|.+|+.+|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 2222 11111 222356899999999 9999999999999999999998775556779999999999999999998876
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=3.7e-20 Score=146.21 Aligned_cols=81 Identities=19% Similarity=0.554 Sum_probs=75.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||+++++++|+++|+.||+|.++++..++.++.++|||||+|.+.++|..|++. ++..+.|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3457999999999999999999999999999999999998899999999999999999999999 899999999999876
Q ss_pred CC
Q psy17262 93 VP 94 (172)
Q Consensus 93 ~~ 94 (172)
.+
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 35
>KOG0105|consensus
Probab=99.86 E-value=4.4e-20 Score=123.02 Aligned_cols=149 Identities=15% Similarity=0.322 Sum_probs=125.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
...+++|||+|||+++.+.+|.++|-+||.|..|.+-..+ ....||||+|+++.+|+.|+.. ++..++|+.|.|..
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 3567999999999999999999999999999998874422 2457999999999999999998 99999999999998
Q ss_pred cCCCCCCC--------------------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccce
Q psy17262 92 AVPRDEIG--------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF 150 (172)
Q Consensus 92 ~~~~~~~~--------------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~ 150 (172)
+....... -+...-...++.|.+||. -++++|+....+-|.|+...+.++. .
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~ 152 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------V 152 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------c
Confidence 87553211 012222345799999999 9999999999999999999987763 6
Q ss_pred EEEEeCCHHHHHHHHHHhCCC
Q psy17262 151 AFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 151 afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.|+|...|+...|+.+|..+
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred eeeeeeehhhHHHHHHhhccc
Confidence 899999999999999988753
No 36
>KOG4206|consensus
Probab=99.82 E-value=8e-19 Score=120.60 Aligned_cols=149 Identities=19% Similarity=0.390 Sum_probs=126.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHH----HHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQA----FFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.++.+|||.||+..+..++|+. +|+.||.|.+|.... |...+|.|||.|++.+.|..|+.. ++..+.|..++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4555999999999999999988 999999999998876 777899999999999999999998 89999999999
Q ss_pred eeecCCCCCCCCC--------------------------------------------ccccccceEEEeCCCC-CCHHHH
Q psy17262 89 TKRAVPRDEIGKP--------------------------------------------EANATVKKMFVGGLKD-QEEDDL 123 (172)
Q Consensus 89 v~~~~~~~~~~~~--------------------------------------------~~~~~~~~l~v~~l~~-~~~~~l 123 (172)
+.++......... ....+...+++.|+|. ++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9988755331100 1133456799999999 999999
Q ss_pred HHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 124 REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 124 ~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+|..|++-..++++... .+.|||+|.+...|..|.+.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhcc
Confidence 9999999999999987643 45899999999999999988876
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=5.3e-19 Score=117.42 Aligned_cols=85 Identities=35% Similarity=0.617 Sum_probs=78.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
...+++|||+|||+++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678899999999999999999999999999999999998999999999999999999999987 88999999999999
Q ss_pred cCCCCC
Q psy17262 92 AVPRDE 97 (172)
Q Consensus 92 ~~~~~~ 97 (172)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 38
>KOG4211|consensus
Probab=99.81 E-value=1.8e-18 Score=130.31 Aligned_cols=154 Identities=19% Similarity=0.316 Sum_probs=123.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
+.....-|.+++||++||++||.+||+.++ |.++. ..+.+++..|-|||+|.++++++.|++.+...+..+.|.|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~--~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLE--IPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEE--EeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445566788999999999999999999985 45644 444479999999999999999999999999999999999988
Q ss_pred cCCCCCCC-----CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 92 AVPRDEIG-----KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 92 ~~~~~~~~-----~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
+...+..- .......-..|-+++||. +++++|.++|+..-.|....++.....+.+.|-|||.|++.+.|+.|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 86554421 111223456899999999 999999999998855555333444445778999999999999999999
Q ss_pred HHh
Q psy17262 166 CKY 168 (172)
Q Consensus 166 ~~~ 168 (172)
...
T Consensus 163 ~rh 165 (510)
T KOG4211|consen 163 GRH 165 (510)
T ss_pred HHH
Confidence 754
No 39
>KOG0147|consensus
Probab=99.77 E-value=4.2e-18 Score=129.74 Aligned_cols=153 Identities=20% Similarity=0.444 Sum_probs=121.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
+-++|||+||-.++++++|+..|++||.|..+.+..+..||.++||+||+|.+.++|..|++. ++..+.|+.|+|..-+
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 344499999999999999999999999999999999988999999999999999999999988 8899999998875432
Q ss_pred CCCCCC------------------------------------------------------------------CCcc----
Q psy17262 94 PRDEIG------------------------------------------------------------------KPEA---- 103 (172)
Q Consensus 94 ~~~~~~------------------------------------------------------------------~~~~---- 103 (172)
..-... ....
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 111000 0000
Q ss_pred ---ccccceEEEeCC--CC-CCH--------HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 ---NATVKKMFVGGL--KD-QEE--------DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ---~~~~~~l~v~~l--~~-~~~--------~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..++.++.+.|+ |. .|+ +++.+.+.++|+|..|.+-. .+-|+.||.|.+.+.|..|+.+||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~-----ns~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDK-----NSAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEcc-----CCCceEEEecCcHHHHHHHHHHHh
Confidence 134456666665 22 222 67888899999999998732 223899999999999999999999
Q ss_pred CCC
Q psy17262 170 IEF 172 (172)
Q Consensus 170 ~~~ 172 (172)
|.|
T Consensus 512 grW 514 (549)
T KOG0147|consen 512 GRW 514 (549)
T ss_pred hhh
Confidence 976
No 40
>KOG4212|consensus
Probab=99.75 E-value=1.3e-16 Score=119.05 Aligned_cols=155 Identities=23% Similarity=0.362 Sum_probs=131.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh-hcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
...|.+||+|||+++.+.||+++|. +.|+|..+.++.+. .++++|+|-|+|++++.+++|++. +...+.|++|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 4456699999999999999999997 56999999999988 899999999999999999999999 88999999999976
Q ss_pred cCCCCCC-----------------------------------------------C-------------------------
Q psy17262 92 AVPRDEI-----------------------------------------------G------------------------- 99 (172)
Q Consensus 92 ~~~~~~~-----------------------------------------------~------------------------- 99 (172)
....... .
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 5431100 0
Q ss_pred -------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 100 -------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 100 -------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.........++||.||.. +....|++.|..-|.|..+.+..++. +.++|+|.++|+++-.|-.|+.++++
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhcc
Confidence 000112235789999999 99999999999999999999988875 58899999999999999999999984
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2.4e-17 Score=96.54 Aligned_cols=69 Identities=28% Similarity=0.663 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
|||+|||+++++++|+++|+.||.+..+.+..+ .++.++|+|||+|.+.++|..|++. ++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 4888999999999999999999997 88999998874
No 42
>KOG0149|consensus
Probab=99.73 E-value=1.4e-17 Score=114.92 Aligned_cols=80 Identities=40% Similarity=0.724 Sum_probs=74.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
.-..|||+||+++++.++|+++|++||+|++..++.++.|++++||+||+|+|.++|.+|++.-...|+||+.-+..+..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999987899999888876654
No 43
>KOG0122|consensus
Probab=99.71 E-value=1.3e-16 Score=110.75 Aligned_cols=82 Identities=21% Similarity=0.394 Sum_probs=78.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..+.+|.|.|||.+++|++|.++|.+||.|.++.+..++.||.++|+|||.|.+.++|++|+.. ++.-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4667799999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCC
Q psy17262 93 VPR 95 (172)
Q Consensus 93 ~~~ 95 (172)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 44
>KOG0124|consensus
Probab=99.71 E-value=5.5e-16 Score=113.46 Aligned_cols=82 Identities=18% Similarity=0.543 Sum_probs=73.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..=.+|||..+.++.+++||+..|+.||+|..|.+-+.++++.++||+|++|.+..+...|+.. +-..+.|+.++|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3456899999999999999999999999999999999998888999999999999999999998 778899999988765
Q ss_pred CCC
Q psy17262 93 VPR 95 (172)
Q Consensus 93 ~~~ 95 (172)
...
T Consensus 288 vTP 290 (544)
T KOG0124|consen 288 VTP 290 (544)
T ss_pred cCC
Confidence 533
No 45
>KOG0129|consensus
Probab=99.70 E-value=1e-15 Score=116.29 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=121.6
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC--Cccc---eEEEEECCHHHHHHHHhcCCCcc
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRG---FGFITYSEAKMVDDAMSNRPHNI 82 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g---~afv~f~~~~~a~~a~~~~~~~~ 82 (172)
.....+..++.|||++||++++|+.|...|..||.+..-+-.+....+ ..+| |.|+.|+++.+.+..+...-..-
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 344556788999999999999999999999999996544332211111 2456 99999999999988887521111
Q ss_pred ------------CCeEEEeeecCCCCC---CCCCccccccceEEEeCCCC-CCHHHHHHHHh-cccceeEEEEeecCCCC
Q psy17262 83 ------------DGRVVETKRAVPRDE---IGKPEANATVKKMFVGGLKD-QEEDDLREYFS-QFGTIESVNMVTNKETG 145 (172)
Q Consensus 83 ------------~~~~i~v~~~~~~~~---~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~-~~g~v~~~~~~~~~~~~ 145 (172)
....|.|.++...+. ......-.+.+++||++||. ++.++|..+|+ -||.|..+.|-.|++-.
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 223344444433322 11233456788999999999 99999999999 79999999999998889
Q ss_pred CccceEEEEeCCHHHHHHHHHH
Q psy17262 146 AKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 146 ~~~g~afv~f~~~~~a~~A~~~ 167 (172)
+++|.|-|.|++..+-.+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 9999999999999999999975
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=2e-16 Score=92.75 Aligned_cols=69 Identities=33% Similarity=0.602 Sum_probs=62.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +.++|+|||+|.++++|..|++. ++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999985 88999999999999999999999 66889998874
No 47
>KOG0125|consensus
Probab=99.69 E-value=3.6e-16 Score=112.70 Aligned_cols=88 Identities=26% Similarity=0.542 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.+...++|+|.|||+...+.||+.+|++||.|+++.|+.+ ..-|||+|||+|+++++|++|.++ ++..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3456689999999999999999999999999999999987 455999999999999999999999 9999999999999
Q ss_pred ecCCCCCCCCC
Q psy17262 91 RAVPRDEIGKP 101 (172)
Q Consensus 91 ~~~~~~~~~~~ 101 (172)
.++.....++.
T Consensus 170 ~ATarV~n~K~ 180 (376)
T KOG0125|consen 170 NATARVHNKKK 180 (376)
T ss_pred ccchhhccCCc
Confidence 99877544443
No 48
>KOG1457|consensus
Probab=99.68 E-value=2.2e-15 Score=103.46 Aligned_cols=157 Identities=15% Similarity=0.302 Sum_probs=116.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEe-cCCCCCccceEEEEECCHHHHHHHHhc-CCCccC---Ce
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMK-DPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---GR 85 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~---~~ 85 (172)
.++..-|+|||.+||.++...+|+.+|+.|--.+...+-. ++.....+-.||++|.+..+|.+|+.. ++..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3455689999999999999999999999996555555543 222233568999999999999999998 777775 45
Q ss_pred EEEeeecCCCCCCC------------------------------------------------------------------
Q psy17262 86 VVETKRAVPRDEIG------------------------------------------------------------------ 99 (172)
Q Consensus 86 ~i~v~~~~~~~~~~------------------------------------------------------------------ 99 (172)
.+.+..+.......
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 56665443211000
Q ss_pred ------------C--CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q psy17262 100 ------------K--PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 100 ------------~--~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A 164 (172)
. ........+|||.||.. +++++|+++|+.|.+....++... .|. ..||++|++.+.|..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDA 264 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHH
Confidence 0 00011124799999988 999999999999999888887532 233 3799999999999999
Q ss_pred HHHhCCC
Q psy17262 165 VCKYNIE 171 (172)
Q Consensus 165 ~~~~~~~ 171 (172)
+..|+|.
T Consensus 265 m~~lqg~ 271 (284)
T KOG1457|consen 265 MNHLQGN 271 (284)
T ss_pred HHHhhcc
Confidence 9999874
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.68 E-value=2.6e-15 Score=109.62 Aligned_cols=127 Identities=26% Similarity=0.554 Sum_probs=107.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~ 94 (172)
.++|||+|||.++++++|+++|..||.+..+.+..++.++.++|+|||+|.++++|..|+.. ++..+.|+.+.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999 77999999999998542
Q ss_pred ----CCCCCC--------------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecC
Q psy17262 95 ----RDEIGK--------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK 142 (172)
Q Consensus 95 ----~~~~~~--------------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 142 (172)
...... .........+++.+++. ++...+...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 222110 11223445789999999 9999999999999999777665544
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=6.2e-16 Score=109.98 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=71.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~ 95 (172)
.++|||+|||+.+++++|+++|+.||+|.++.++.+.. ++|+|||+|.++++|+.|+..++..+.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999999988653 579999999999999999988999999999999988654
Q ss_pred C
Q psy17262 96 D 96 (172)
Q Consensus 96 ~ 96 (172)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=8.3e-16 Score=102.13 Aligned_cols=68 Identities=29% Similarity=0.651 Sum_probs=63.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|++|++.||+.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 34456899999999 999999999999999999999999999999999999999999999999998864
No 52
>KOG1190|consensus
Probab=99.65 E-value=1.2e-15 Score=112.93 Aligned_cols=156 Identities=14% Similarity=0.230 Sum_probs=118.3
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCcc
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNI 82 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~ 82 (172)
+........+++.|+++|||.+++|++|.+++.+||.|..+.+...+ ..||++|.++++|...+.. ....+
T Consensus 18 ~~~~~~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~l 91 (492)
T KOG1190|consen 18 KYTQRSMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVL 91 (492)
T ss_pred ccccccccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccc
Confidence 33344445689999999999999999999999999999999887643 4899999999998885554 34567
Q ss_pred CCeEEEeeecCCCCCC----------------------------------CCCccccccceEEEeCCCC-CCHHHHHHHH
Q psy17262 83 DGRVVETKRAVPRDEI----------------------------------GKPEANATVKKMFVGGLKD-QEEDDLREYF 127 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~----------------------------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f 127 (172)
.|+.|+|+++.-..-. +........-++.|.++-. ++-+.|+++|
T Consensus 92 r~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF 171 (492)
T KOG1190|consen 92 RGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF 171 (492)
T ss_pred cCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH
Confidence 8888888775422100 0001111234577888887 9999999999
Q ss_pred hcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 128 SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 128 ~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++||.|..+.- +.+..+. -|+|.|.++++|+.|...|+|+
T Consensus 172 S~fG~VlKIiT-F~Knn~F---QALvQy~d~~sAq~AK~aLdGq 211 (492)
T KOG1190|consen 172 SKFGFVLKIIT-FTKNNGF---QALVQYTDAVSAQAAKLALDGQ 211 (492)
T ss_pred hhcceeEEEEE-Eecccch---hhhhhccchhhHHHHHHhccCC
Confidence 99999999743 3332233 2999999999999999999985
No 53
>KOG1548|consensus
Probab=99.63 E-value=3e-14 Score=103.51 Aligned_cols=155 Identities=17% Similarity=0.320 Sum_probs=123.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
+..+..|||.|||.++|-+++.++|+++|-|. .|++.++. .|..+|-|.+.|...+++..|+.. +...+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45567799999999999999999999999764 57888877 588999999999999999999998 889999
Q ss_pred CeEEEeeecCCCCCC--------------------------------CCCccccccceEEEeCCCC-----CC-------
Q psy17262 84 GRVVETKRAVPRDEI--------------------------------GKPEANATVKKMFVGGLKD-----QE------- 119 (172)
Q Consensus 84 ~~~i~v~~~~~~~~~--------------------------------~~~~~~~~~~~l~v~~l~~-----~~------- 119 (172)
|+.++|..+...-.. ..+......++|.+.|+=. .+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999877632110 0011122345788888632 22
Q ss_pred HHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 120 EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 120 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
+++|.+.+++||.|.++.+... .+.|.+-|.|.+.+.|..+++.|+|++
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3567788999999999977543 456679999999999999999999975
No 54
>KOG0113|consensus
Probab=99.63 E-value=3.4e-15 Score=106.43 Aligned_cols=80 Identities=26% Similarity=0.566 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
.+=++|||+-|+.+++|++|+..|+.||+|..|.++.++.|+.++|||||+|+++.+...|.+. ++..|+|+.|-|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 5679999999999999999999999999999999999999999999999999999999999998 999999999988754
Q ss_pred C
Q psy17262 93 V 93 (172)
Q Consensus 93 ~ 93 (172)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=6e-15 Score=111.01 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=74.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEEEee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVETK 90 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i~v~ 90 (172)
...++|||+|||+++++++|+++|++||+|..++++.++.++.++|+|||+|.+.++|++|++. ++..+.+ +.|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4567899999999999999999999999999999999988999999999999999999999998 7777765 688888
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 87654
No 56
>KOG0106|consensus
Probab=99.62 E-value=1.3e-15 Score=105.75 Aligned_cols=139 Identities=26% Similarity=0.498 Sum_probs=112.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
..+||++||+.+.+.+|..+|..||.+.++.+.. |++||+|.+..+|..|+.. ++..+.|..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4789999999999999999999999998887754 7899999999999999998 888888888888877642
Q ss_pred ------CCCC--------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHH
Q psy17262 96 ------DEIG--------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (172)
Q Consensus 96 ------~~~~--------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~ 160 (172)
...+ ..........+.+.++.. +.+++|...|.++|.+..... .++.+||+|+..++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 1111 011122335678888888 999999999999999844432 45579999999999
Q ss_pred HHHHHHHhCCC
Q psy17262 161 VDKIVCKYNIE 171 (172)
Q Consensus 161 a~~A~~~~~~~ 171 (172)
|.+|+..+++.
T Consensus 146 a~ra~~~l~~~ 156 (216)
T KOG0106|consen 146 AKRALEKLDGK 156 (216)
T ss_pred hhhcchhccch
Confidence 99999998863
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.62 E-value=6.2e-15 Score=103.38 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=70.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
..++|+|+||++.+|+++|+++|+.||+|.+++++.+. ..+++|||+|.++++|+.|+..++..|.++.|.|.++..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45899999999999999999999999999999999863 456899999999999999999999999999999987653
No 58
>KOG0121|consensus
Probab=99.62 E-value=2.1e-15 Score=94.95 Aligned_cols=82 Identities=23% Similarity=0.434 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
...+++|||+||+..++|++|.++|++.|+|..|.+=.++-+..+-|+|||+|.+.++|..|+.. ++..++.++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35789999999999999999999999999999999988888888999999999999999999999 99999999999997
Q ss_pred cCC
Q psy17262 92 AVP 94 (172)
Q Consensus 92 ~~~ 94 (172)
...
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 653
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=5.8e-15 Score=86.28 Aligned_cols=61 Identities=38% Similarity=0.769 Sum_probs=57.5
Q ss_pred EEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 110 l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
|||+|||. +++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|.+|++.+||.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 79999999 999999999999999999999887 56889999999999999999999999874
No 60
>KOG0120|consensus
Probab=99.61 E-value=1.2e-14 Score=111.86 Aligned_cols=163 Identities=20% Similarity=0.422 Sum_probs=127.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
........+.++|++||...+++++.+.+..||++....++.+..++.++||||.+|.++.....|++. ++..+.+..+
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 344456778899999999999999999999999999999999998999999999999999999999998 8999999999
Q ss_pred EeeecCCCCCCCCCcc------------------ccccceEEEeCCC--C--CCH-------HHHHHHHhcccceeEEEE
Q psy17262 88 ETKRAVPRDEIGKPEA------------------NATVKKMFVGGLK--D--QEE-------DDLREYFSQFGTIESVNM 138 (172)
Q Consensus 88 ~v~~~~~~~~~~~~~~------------------~~~~~~l~v~~l~--~--~~~-------~~l~~~f~~~g~v~~~~~ 138 (172)
.++.+........... ..+.+.|.+.|+- . ..+ ++++..+.+||.|..+.+
T Consensus 362 vvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~i 441 (500)
T KOG0120|consen 362 VVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEI 441 (500)
T ss_pred EeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEec
Confidence 9987765543322111 1122333333321 1 111 457777889999999999
Q ss_pred eec---CCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 139 VTN---KETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 139 ~~~---~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.++ .....+.|..||+|.+.+++++|.+.|+|.
T Consensus 442 pr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 442 PRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred CCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 877 223445677999999999999999999985
No 61
>KOG0114|consensus
Probab=99.60 E-value=1.6e-14 Score=87.71 Aligned_cols=90 Identities=24% Similarity=0.414 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc
Q psy17262 4 RYDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (172)
Q Consensus 4 ~~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~ 82 (172)
..+....-.++-++.|||+|||.++|.++..++|.+||.|..|++=. +...+|.|||.|++..+|..|+.. .+..+
T Consensus 6 ~~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 6 KKKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred cccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 34455566778899999999999999999999999999999998865 445679999999999999999998 89999
Q ss_pred CCeEEEeeecCCCC
Q psy17262 83 DGRVVETKRAVPRD 96 (172)
Q Consensus 83 ~~~~i~v~~~~~~~ 96 (172)
.++.+.|.+.++.+
T Consensus 83 ~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 83 DNRYLVVLYYQPED 96 (124)
T ss_pred CCceEEEEecCHHH
Confidence 99999998887654
No 62
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=2.6e-14 Score=83.37 Aligned_cols=70 Identities=27% Similarity=0.588 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
+|+|+|||+.+++++|+++|+.||++..+.+..++ +.++|+|||+|.+.++|+.|+.. ++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988775 66889999999999999999998 778888988876
No 63
>KOG0107|consensus
Probab=99.56 E-value=2.2e-14 Score=95.10 Aligned_cols=79 Identities=25% Similarity=0.522 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+||+..+++.||...|..||++..++|-.++ .|||||+|+++.+|+.|+.. ++..|.|..+.|..+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 357899999999999999999999999999999998864 68999999999999999999 999999999999988
Q ss_pred CCCCC
Q psy17262 93 VPRDE 97 (172)
Q Consensus 93 ~~~~~ 97 (172)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 75543
No 64
>KOG4207|consensus
Probab=99.56 E-value=1.1e-14 Score=98.94 Aligned_cols=86 Identities=28% Similarity=0.539 Sum_probs=79.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+.+-+....|.|-||.+.++.++|+..|++||.|-++.|+.++.|+.++|||||.|.+..+|+.|++. ++..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 44456778999999999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|+.+...
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 8776543
No 65
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=5.4e-14 Score=81.74 Aligned_cols=69 Identities=28% Similarity=0.592 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 21 IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
|+|||..+++++|+++|+.||.+..+.+..++.++.++|+|||+|.+.++|..|+.. ++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 579999999999999999999999999998887788999999999999999999988 668888888776
No 66
>KOG0130|consensus
Probab=99.55 E-value=1.8e-14 Score=91.67 Aligned_cols=83 Identities=19% Similarity=0.345 Sum_probs=77.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...-.|||.++.+.++|++|.+.|..||+|.++++..++.||-.+|||.|+|.+.+.|+.|+.. ++..+.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 4456799999999999999999999999999999999999999999999999999999999999 889999999999998
Q ss_pred CCCC
Q psy17262 93 VPRD 96 (172)
Q Consensus 93 ~~~~ 96 (172)
..+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7553
No 67
>KOG0149|consensus
Probab=99.53 E-value=3.4e-14 Score=98.40 Aligned_cols=67 Identities=36% Similarity=0.689 Sum_probs=62.0
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.+....+|||+||++ +..+.|+..|+.||+|....++.|..+++++||+||.|.+.++|.+|+..-|
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 455667999999999 9999999999999999999999999999999999999999999999997543
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=9.2e-14 Score=81.33 Aligned_cols=60 Identities=37% Similarity=0.747 Sum_probs=55.1
Q ss_pred EEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 110 l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
|||+|||. +++++|.++|+.+|.|..+.+..+++ +.++++|||+|.+.++|.+|++.+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 79999999 99999999999999999999999877 89999999999999999999999885
No 69
>KOG0110|consensus
Probab=99.52 E-value=1.1e-13 Score=108.62 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=114.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
....+-++++|||..+..++|...|..||++..+.++.. ---|+|.|.++.+|..|+.. ....+...++++.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 345567889999999999999999999999999955421 12489999999999999987 54555555555554
Q ss_pred cCCCCCC-------------------C--------------CC----------ccccc-cceEEEeCCCC-CCHHHHHHH
Q psy17262 92 AVPRDEI-------------------G--------------KP----------EANAT-VKKMFVGGLKD-QEEDDLREY 126 (172)
Q Consensus 92 ~~~~~~~-------------------~--------------~~----------~~~~~-~~~l~v~~l~~-~~~~~l~~~ 126 (172)
+....-. . .. ..... ..+||+.||+. ++.+.+...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 4311000 0 00 00011 12399999999 999999999
Q ss_pred HhcccceeEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 127 FSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 127 f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
|...|.|..+.|...++. -.+.|||||+|.++++|++|+..|+|
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC
Confidence 999999999988765432 23569999999999999999999986
No 70
>KOG0126|consensus
Probab=99.52 E-value=1.9e-15 Score=100.66 Aligned_cols=81 Identities=31% Similarity=0.583 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..+.-|||+|||++.||.||.-.|++||++.+|.++++..||.++||||+.|++..+.-.|+.. ++..|.|+.|+|..-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4677899999999999999999999999999999999999999999999999999999999988 999999999999754
Q ss_pred CC
Q psy17262 93 VP 94 (172)
Q Consensus 93 ~~ 94 (172)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 71
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=8.9e-14 Score=105.63 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=72.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCH--HHHHHHHhc-CCCccCCeEEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEA--KMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+.....+|||+||++.++++||+..|..||.|.++.|++. +| +|||||+|.+. .++.+|++. ++..+.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 4456789999999999999999999999999999999943 56 99999999987 789999998 99999999999
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|..+.+.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9988754
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=3.1e-13 Score=79.19 Aligned_cols=73 Identities=25% Similarity=0.586 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+|+|+|||+.+++++|+++|+.+|.+..+.+..++.+ .++|+|||+|.+.++|..|+.. ++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 6789999999999999999998 66778999888763
No 73
>KOG1190|consensus
Probab=99.50 E-value=1.8e-12 Score=96.28 Aligned_cols=146 Identities=13% Similarity=0.212 Sum_probs=117.2
Q ss_pred cceEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 16 LRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 16 ~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
+..|.|.||..+ +|++.|..+|.-||+|.+++|.+++ +-.|.|.|.+...|+.|++. .++.+.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678889999655 7999999999999999999999975 36799999999999999999 9999999999998765
Q ss_pred CCCCC-----------------------------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCC
Q psy17262 94 PRDEI-----------------------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE 143 (172)
Q Consensus 94 ~~~~~-----------------------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~ 143 (172)
-.... .......+..++++.|+|. +++++++..|..-|.........
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 22110 0011224556899999999 99999999999877765554332
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 144 TGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 144 ~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+..+-+|++.+.+.|+|..|+-.++.
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred -CCCcceeecccCChhHhhhhcccccc
Confidence 23345899999999999999987753
No 74
>KOG0122|consensus
Probab=99.49 E-value=1.1e-13 Score=96.26 Aligned_cols=65 Identities=35% Similarity=0.585 Sum_probs=62.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...+|-|.||+. +++++|.++|.+||.|.++.+.+++.||.++|+|||.|.+.++|++|+..|||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC
Confidence 456799999999 99999999999999999999999999999999999999999999999999997
No 75
>KOG0108|consensus
Probab=99.49 E-value=1.8e-13 Score=104.73 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=76.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
+.|||+|||+++++++|.++|+..|.|.+++++.++.||.++||||++|.+++.|+.|++. ++.++.|+.++|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999 899999999999988754
Q ss_pred C
Q psy17262 96 D 96 (172)
Q Consensus 96 ~ 96 (172)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 76
>KOG1456|consensus
Probab=99.48 E-value=1.2e-12 Score=96.33 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=120.5
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCCe
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGR 85 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~ 85 (172)
.+..+..+-.|+|++|-..++|.||-+.++.||+|.-+..+. .+..|.|+|++.+.|+.|+.. +...+.|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCc
Confidence 344557788899999999999999999999999998777665 346899999999999999986 56678888
Q ss_pred EEEeeecCCCCCCCC-CccccccceEEEeCCCC---CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHH
Q psy17262 86 VVETKRAVPRDEIGK-PEANATVKKMFVGGLKD---QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161 (172)
Q Consensus 86 ~i~v~~~~~~~~~~~-~~~~~~~~~l~v~~l~~---~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a 161 (172)
.--+.+++.+..... .....+.+.|.+.-|.. +|-+.|.+++.+.|.|.++-|... ++. -|.|||++.+.|
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~A 172 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVA 172 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHH
Confidence 888888765543322 23333344455444433 899999999999999999987754 344 499999999999
Q ss_pred HHHHHHhCCC
Q psy17262 162 DKIVCKYNIE 171 (172)
Q Consensus 162 ~~A~~~~~~~ 171 (172)
++|.+.|||.
T Consensus 173 qrAk~alNGA 182 (494)
T KOG1456|consen 173 QRAKAALNGA 182 (494)
T ss_pred HHHHhhcccc
Confidence 9999999983
No 77
>KOG0111|consensus
Probab=99.45 E-value=9.2e-14 Score=95.45 Aligned_cols=84 Identities=30% Similarity=0.554 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...|+|||++|..++++.-|...|-+||.|..|.++.+..+.+++|+|||+|...++|.+|+.. +..++.|+.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999999998999999999999999999999998 889999999999998
Q ss_pred CCCCC
Q psy17262 93 VPRDE 97 (172)
Q Consensus 93 ~~~~~ 97 (172)
.|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87653
No 78
>KOG0121|consensus
Probab=99.45 E-value=2.7e-13 Score=85.58 Aligned_cols=65 Identities=23% Similarity=0.365 Sum_probs=61.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.+.+|||+||.. +++++|.++|+++|.|..+.+-.+..+..+.|+|||+|-..++|..|+..+++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg 100 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG 100 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc
Confidence 467999999999 99999999999999999999988999999999999999999999999999886
No 79
>KOG1365|consensus
Probab=99.45 E-value=3.9e-13 Score=99.11 Aligned_cols=155 Identities=22% Similarity=0.301 Sum_probs=117.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhh---c-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQ---W-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~---~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
..--.|.+++||+++++.|+.+||.+ . |....+-++..+ +++..|-||+.|..+++|+.|+..+...+..+.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 33456778999999999999999953 2 345666666655 788999999999999999999999888888777777
Q ss_pred eecCCCCCC---------------CC----------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeE---EEEee
Q psy17262 90 KRAVPRDEI---------------GK----------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES---VNMVT 140 (172)
Q Consensus 90 ~~~~~~~~~---------------~~----------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~---~~~~~ 140 (172)
..++..+.. .. -.......+|-+++||. .+.++|..+|..|..-.. +.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 666533210 00 01122256899999999 999999999998854333 44555
Q ss_pred cCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 141 NKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 141 ~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+. .|.+.|-|||+|.+.|.|..|..+.+.
T Consensus 318 N~-qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 318 NG-QGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred cC-CCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 53 478889999999999999999887654
No 80
>KOG4211|consensus
Probab=99.40 E-value=3.7e-12 Score=96.60 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=117.7
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeE-EEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
..+..+.....|.+++||+.||++||.+||+-+-.+.. |.++.++ .+++.|-|||.|.+.+.|+.|+..+...|..+.
T Consensus 95 ~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRY 173 (510)
T KOG4211|consen 95 GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRY 173 (510)
T ss_pred CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccce
Confidence 33444466788999999999999999999998876666 4455555 566899999999999999999998888888888
Q ss_pred EEeeecCCCCC-----------------------C---------------------------------------------
Q psy17262 87 VETKRAVPRDE-----------------------I--------------------------------------------- 98 (172)
Q Consensus 87 i~v~~~~~~~~-----------------------~--------------------------------------------- 98 (172)
|.|..+.-.+. .
T Consensus 174 IEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~ 253 (510)
T KOG4211|consen 174 IEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGG 253 (510)
T ss_pred EEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccc
Confidence 88755431100 0
Q ss_pred ----CCCc---------------cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCH
Q psy17262 99 ----GKPE---------------ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (172)
Q Consensus 99 ----~~~~---------------~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 158 (172)
.... .......++.++||. .+..++..+|+..-.+ .+.+-..+ ++...|-|.|+|.+.
T Consensus 254 ~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~ 331 (510)
T KOG4211|consen 254 GRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATG 331 (510)
T ss_pred ccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccc
Confidence 0000 001125789999999 9999999999987444 56555554 578888999999999
Q ss_pred HHHHHHHHH
Q psy17262 159 DVVDKIVCK 167 (172)
Q Consensus 159 ~~a~~A~~~ 167 (172)
++|..|+.+
T Consensus 332 edav~Amsk 340 (510)
T KOG4211|consen 332 EDAVGAMGK 340 (510)
T ss_pred hhhHhhhcc
Confidence 999999864
No 81
>KOG0125|consensus
Probab=99.40 E-value=1.3e-12 Score=94.52 Aligned_cols=67 Identities=22% Similarity=0.446 Sum_probs=61.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|+|+|+|. .-+-||+++|.+||.|.++.|+++. ..++||+||.|++.++|.+|.++|||.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcc
Confidence 345568999999999 9999999999999999999999975 567999999999999999999999985
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.8e-12 Score=92.46 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=55.1
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.++|||+|||. +++++|+++|+.||.|.++.|+.+.. .+|+|||+|.++++|..|+. |||.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~ 65 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGA 65 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCC
Confidence 46899999999 99999999999999999999988753 46899999999999999995 7663
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=3.6e-12 Score=74.17 Aligned_cols=60 Identities=42% Similarity=0.737 Sum_probs=55.6
Q ss_pred eEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 109 ~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+|+|+|+|. ++.++|+++|..||.+..+.+..+. +.++|+|||+|.+.++|++|+..+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 589999999 9999999999999999999988776 67889999999999999999999885
No 84
>KOG0113|consensus
Probab=99.37 E-value=3.7e-12 Score=91.17 Aligned_cols=69 Identities=28% Similarity=0.469 Sum_probs=65.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+-|+. +++..|+..|+.||.|+.+.|+.+..|+.++|||||+|.+.-+...|....+|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 457889999999999 999999999999999999999999999999999999999999999999887764
No 85
>KOG4212|consensus
Probab=99.37 E-value=4.4e-11 Score=89.91 Aligned_cols=78 Identities=27% Similarity=0.424 Sum_probs=66.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
++....++||.||...+.-..|++.|.-.|.++.+.+-.++ .+.++|+|-++|..+-.|-.|+.. ++..+.+++..++
T Consensus 211 ~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 211 SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVR 289 (608)
T ss_pred CCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceee
Confidence 56677889999999999999999999999999999998888 668999999999999999999987 5455555544443
No 86
>KOG0120|consensus
Probab=99.35 E-value=4.4e-12 Score=98.00 Aligned_cols=153 Identities=26% Similarity=0.532 Sum_probs=124.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhc-----------Cc-eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCC
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQW-----------GE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH 80 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~-----------G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 80 (172)
....++++|+++|+.++++..-.+|..- |+ +..+.+-. .+.+||++|.+.+.|..|+..++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhcccch
Confidence 3567899999999999999999999764 32 44554443 457999999999999999998888
Q ss_pred ccCCeEEEeeecCCCCCC-----------------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecC
Q psy17262 81 NIDGRVVETKRAVPRDEI-----------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK 142 (172)
Q Consensus 81 ~~~~~~i~v~~~~~~~~~-----------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 142 (172)
.+.|..+++......-.. ..........+++|++||. .++.++.++.+.||.+....+..+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 888887777544322111 1112223456799999999 9999999999999999999999999
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 143 ETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 143 ~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.++.++||||.+|.++.....|++.+||.
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm 354 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGM 354 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchh
Confidence 99999999999999999999999999984
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=99.35 E-value=9e-12 Score=72.83 Aligned_cols=60 Identities=25% Similarity=0.467 Sum_probs=52.8
Q ss_pred HHHHHHHHh----hcCceeEEE-EEecCCC--CCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 30 DESLQAFFE----QWGEIVDVV-VMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 30 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||+|.+.++|..|+.. ++..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 6655545 88999999999999999999998 999999998875
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=7.1e-12 Score=72.62 Aligned_cols=59 Identities=46% Similarity=0.759 Sum_probs=55.0
Q ss_pred EeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 112 VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 112 v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
|+|+|. +++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC
Confidence 578998 99999999999999999999998877788999999999999999999999885
No 89
>KOG4207|consensus
Probab=99.33 E-value=3.4e-12 Score=87.00 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=64.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+......|.|.||-. ++.++|+.+|++||.|-.|.|.++..|..++|||||.|.+..+|+.|+++|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 344566899999999 999999999999999999999999999999999999999999999999999985
No 90
>KOG0114|consensus
Probab=99.32 E-value=1.7e-11 Score=74.73 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=56.4
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.-.+.|||+|||. +|.++..++|.+||.|..+++--. ...+|-|||.|++..+|.+|+++|+|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhccc
Confidence 3356799999999 999999999999999999998543 455788999999999999999999874
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.4e-11 Score=68.78 Aligned_cols=55 Identities=24% Similarity=0.575 Sum_probs=49.1
Q ss_pred HHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 33 LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 33 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|++. ++..+.|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997653 58999999999999999998 999999999999875
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=2.1e-11 Score=85.76 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=53.7
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+|||+||++ +++++|+++|+.||.|.++.+.++. ...++|||+|.++++|..|+ .|+|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnG 65 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSG 65 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCC
Confidence 46899999999 9999999999999999999999884 34579999999999999998 5555
No 93
>KOG0130|consensus
Probab=99.29 E-value=1.2e-11 Score=78.88 Aligned_cols=69 Identities=20% Similarity=0.488 Sum_probs=63.9
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
........|||.++.. .+++++...|..||.|+++.+-.+..||..+|||+|+|.+.+.|++|+..+||
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc
Confidence 3345567899999988 99999999999999999999999999999999999999999999999999996
No 94
>KOG0132|consensus
Probab=99.28 E-value=1.7e-11 Score=97.59 Aligned_cols=79 Identities=22% Similarity=0.474 Sum_probs=72.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
.-+++|||++|+..+++.||.++|+.||+|.+|.++.. +|+|||.+...++|.+|+.. ....+.+..|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 46899999999999999999999999999999999874 58999999999999999999 788999999999999
Q ss_pred CCCCCC
Q psy17262 93 VPRDEI 98 (172)
Q Consensus 93 ~~~~~~ 98 (172)
..+...
T Consensus 493 ~g~G~k 498 (894)
T KOG0132|consen 493 VGKGPK 498 (894)
T ss_pred ccCCcc
Confidence 866543
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=4.8e-11 Score=69.70 Aligned_cols=62 Identities=45% Similarity=0.774 Sum_probs=56.6
Q ss_pred eEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 109 ~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+|+|+|||. +++++|++.|+.+|.+..+.+..++.+ .++|+|||+|.+.++|..|+..+++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 489999999 999999999999999999999877654 67889999999999999999999875
No 96
>KOG0107|consensus
Probab=99.28 E-value=1.1e-11 Score=82.47 Aligned_cols=60 Identities=30% Similarity=0.509 Sum_probs=54.1
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+|||+||+. +++.+|..+|..||.+..+-|-. .+.|||||+|+++-+|..|+..|+|.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~ 70 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGK 70 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCc
Confidence 46899999999 99999999999999999986654 44679999999999999999999985
No 97
>KOG0226|consensus
Probab=99.26 E-value=1.3e-11 Score=86.64 Aligned_cols=153 Identities=18% Similarity=0.326 Sum_probs=120.7
Q ss_pred EEEcCCCCCCCHHH-H--HHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCC
Q psy17262 19 VFIGGLDYRTTDES-L--QAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (172)
Q Consensus 19 v~v~nlp~~~t~~~-l--~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~ 94 (172)
.++.++-..+..+- | ...|+.+-.....+++.+. .+..++.+|+.|+....-..+-.. .+..+....|++..++.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 33445444444333 3 6777777777777777766 566788999999987776666655 55666666677777776
Q ss_pred CCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
.++..-..-...-.+||.+.|.. ++.+.|...|.+|-.-...+++++..|++++||+||-|.+..++.+|+..|||.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 66655545555667999999998 9999999999999999999999999999999999999999999999999999875
No 98
>KOG0415|consensus
Probab=99.26 E-value=1.5e-11 Score=90.14 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=78.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.....+...|||.-|+|-++.+||.-+|+.||.|.+|.++++..|+.+..||||+|.+.+++++|.-. .+..|+++.|.
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999988 77889999999
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|.+++.-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9887754
No 99
>KOG4205|consensus
Probab=99.26 E-value=1.7e-11 Score=90.32 Aligned_cols=149 Identities=29% Similarity=0.519 Sum_probs=105.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
..+.++|++||+++++++++++|++||.|..+.++.+..+.+.+|++||.|.+++++..++....+.+.++.+.|..+.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEe-ecCC----CCCccceEEEEeCCHHHHHHH
Q psy17262 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV-TNKE----TGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~-~~~~----~~~~~g~afv~f~~~~~a~~A 164 (172)
++......... ....+..+++. .+.-.|...+..|+.+.....- +... ...+.+++|..|.+.....-+
T Consensus 176 k~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~ 250 (311)
T KOG4205|consen 176 KEVMQSTKSSV-STRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSGYPEFGNSGLGFGY 250 (311)
T ss_pred hhhcccccccc-ccccccccccccccccccchhccccCccccccccccccccccccccCCCccccccCcccccccc
Confidence 87654332111 11112223443 3444455556555554311000 0000 013456778888755544433
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=2.5e-11 Score=92.59 Aligned_cols=63 Identities=35% Similarity=0.631 Sum_probs=56.2
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCH--HHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY--DVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~A~~~~~~~ 171 (172)
...-+|||+||+. +++++|...|..||.|..+.|++ .+| ||||||+|.+. .++.+|+..|||.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 3446899999999 99999999999999999999984 345 99999999987 7899999999974
No 101
>KOG0146|consensus
Probab=99.25 E-value=1.1e-11 Score=87.62 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=81.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
..+..+.|.|||--||.+....+|.++|-+||.|.+.+++-++.|+.+|.++||.|+++.+|+.|+.. ++..|.-+.++
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|....+++.
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 987777653
No 102
>KOG0153|consensus
Probab=99.25 E-value=3.5e-11 Score=87.80 Aligned_cols=80 Identities=24% Similarity=0.493 Sum_probs=72.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccCCeE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRV 86 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~~~ 86 (172)
.+.+.....+|||++|...++|.+|++.|.+||+|..+.++... +.|||+|.+.++|+.|.+. +...|+|..
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34556788999999999999999999999999999999988744 7999999999999999998 667889999
Q ss_pred EEeeecCC
Q psy17262 87 VETKRAVP 94 (172)
Q Consensus 87 i~v~~~~~ 94 (172)
|.|.|+.+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999988
No 103
>KOG0111|consensus
Probab=99.23 E-value=5.5e-12 Score=86.83 Aligned_cols=68 Identities=28% Similarity=0.532 Sum_probs=63.8
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||++|-. +++..|...|-+||.|..+.++.|..+++-||+|||+|...|+|..|+..||++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 34567999999998 999999999999999999999999999999999999999999999999999864
No 104
>KOG0126|consensus
Probab=99.23 E-value=6.9e-13 Score=88.59 Aligned_cols=64 Identities=33% Similarity=0.539 Sum_probs=60.9
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
-=|||+|||. .|+.+|..+|+.||.|..+.+++|..||.++||||+-|.+.-+..-|+..|||-
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 3599999999 999999999999999999999999999999999999999999999999999873
No 105
>KOG1456|consensus
Probab=99.21 E-value=1.8e-09 Score=79.94 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=118.3
Q ss_pred CCCCCcceEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 11 TEPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.-..+.+.++|-+|... +..+.|.++|+.||.|+++++++.+ .|.|.|++.+....++|+.. ++..+.|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 33467788999999765 6888999999999999999999865 47999999999999999998 88888999888
Q ss_pred eeecCCCCCC-------------------------------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccc-eeE
Q psy17262 89 TKRAVPRDEI-------------------------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT-IES 135 (172)
Q Consensus 89 v~~~~~~~~~-------------------------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~-v~~ 135 (172)
+..+...... .+.....+++.|+--|.|. +|++.|..+|...+. ..+
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 8766522110 1122234567899999999 999999999986543 334
Q ss_pred EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 136 VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 136 ~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+++...+ + .....+++||++.++|-.||.++|.
T Consensus 437 vkvFp~k-s-erSssGllEfe~~s~Aveal~~~NH 469 (494)
T KOG1456|consen 437 VKVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNH 469 (494)
T ss_pred EEeeccc-c-cccccceeeeehHHHHHHHHHHhcc
Confidence 4544333 2 3334689999999999999998874
No 106
>KOG0131|consensus
Probab=99.21 E-value=2.2e-11 Score=81.52 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=60.3
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..+|||+||+. ++++.|+++|-..|.|.++.++++..+...+||||++|.+.|+|+.|+.-||
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln 72 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN 72 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH
Confidence 45899999999 9999999999999999999999999999999999999999999999999877
No 107
>KOG0128|consensus
Probab=99.21 E-value=4e-13 Score=107.47 Aligned_cols=132 Identities=22% Similarity=0.345 Sum_probs=114.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
...++|+.||++.+.+.+|...|.++|.+..+++......++.+|+||+.|.+++++.+|+......+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4456899999999999999999999998888877755557889999999999999999999885555555
Q ss_pred CCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
...++|+|.|. -|.+.++.+++..|.+...+++... .|.++|.|+|.|.+..+|.+++.+.+
T Consensus 736 ------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccch
Confidence 23689999999 9999999999999999999876654 48999999999999999999886654
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=8e-11 Score=68.76 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=45.5
Q ss_pred HHHHHHHHh----cccceeEEE-EeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 120 EDDLREYFS----QFGTIESVN-MVTNKET--GAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 120 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+++|+++|+ .||.|..+. +..+..+ +.++|+|||+|.+.++|.+|+..|||.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 567888888 999999995 6666656 889999999999999999999999985
No 109
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=9.1e-11 Score=85.56 Aligned_cols=65 Identities=40% Similarity=0.735 Sum_probs=62.1
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+|||+|||. +++++|..+|..||.+..+.+..+..++.++|+|||+|.+.++|..|+..+++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~ 180 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK 180 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC
Confidence 68999999999 999999999999999999999999889999999999999999999999999853
No 110
>KOG0108|consensus
Probab=99.15 E-value=1e-10 Score=89.78 Aligned_cols=63 Identities=32% Similarity=0.579 Sum_probs=61.8
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+.+||+|+|. +++++|..+|+..|.|.+++++.|+.||.++||||++|.+.++|.+|++.|||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg 82 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG 82 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC
Confidence 7899999999 99999999999999999999999999999999999999999999999999996
No 111
>KOG4454|consensus
Probab=99.14 E-value=1.1e-11 Score=85.32 Aligned_cols=139 Identities=21% Similarity=0.323 Sum_probs=110.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.++..++|+|+|+...++|+-|.+.|-..|+|.++.|...+ .+..+ +|||.|.++-+...|++. ++..+.+..+.++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34567999999999999999999999999999999998877 55555 999999999999999998 8889988887776
Q ss_pred ecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.-...... -|.. ++.+.+...|+.-|.+..+++..+.+ +.++.++++.+....+.-.++...
T Consensus 83 ~r~G~sha---------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 83 LRCGNSHA---------------PLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred cccCCCcc---------------hhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhh
Confidence 43211000 1334 78888999999999999999887765 777888888887666666665543
No 112
>KOG4208|consensus
Probab=99.13 E-value=4.2e-10 Score=76.86 Aligned_cols=83 Identities=14% Similarity=0.299 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
....--+++.-+|.-..+..+..+|.++ |.+...++.+++.||.|+|||||+|.+++.|.-|-+. ++.-+.++-+.|+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455668899999999999999999998 7889999989999999999999999999999999988 7778889999998
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
.-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 77655
No 113
>KOG1365|consensus
Probab=99.06 E-value=6.1e-09 Score=77.38 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=114.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
.+.+.-|..++||+..+..+|-.+|.-.....-...+-....++..|.+.|.|.|++.-..|++.+.+.+.++.+.+..+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 34556677899999999999999998653222222222222566778999999999999999999989999999999877
Q ss_pred CCCCCCC----------CCccccccceEEEeCCCC-CCHHHHHHHHhc----ccceeEEEEeecCCCCCccceEEEEeCC
Q psy17262 93 VPRDEIG----------KPEANATVKKMFVGGLKD-QEEDDLREYFSQ----FGTIESVNMVTNKETGAKRGFAFIEFND 157 (172)
Q Consensus 93 ~~~~~~~----------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~----~g~v~~~~~~~~~~~~~~~g~afv~f~~ 157 (172)
...+-.. .-......-.+-+++||. .+..++.++|.+ -|....+-++..+ +|...|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecC
Confidence 6543211 111223344688999999 999999999962 2345555555443 47889999999999
Q ss_pred HHHHHHHHHHh
Q psy17262 158 YDVVDKIVCKY 168 (172)
Q Consensus 158 ~~~a~~A~~~~ 168 (172)
+++|+.||.+-
T Consensus 216 ee~aq~aL~kh 226 (508)
T KOG1365|consen 216 EEDAQFALRKH 226 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 114
>KOG0109|consensus
Probab=99.06 E-value=4e-10 Score=80.70 Aligned_cols=78 Identities=18% Similarity=0.434 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+..+.+++|+||.+.|+-++|+..|++||+|.++++++ +|+||.|.-.++|..|+.. ++.++.|+.+.|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 56788999999999999999999999999999999987 5999999999999999988 89999999999998
Q ss_pred cCCCCCC
Q psy17262 92 AVPRDEI 98 (172)
Q Consensus 92 ~~~~~~~ 98 (172)
++.....
T Consensus 147 stsrlrt 153 (346)
T KOG0109|consen 147 STSRLRT 153 (346)
T ss_pred ecccccc
Confidence 8866443
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=1e-09 Score=61.18 Aligned_cols=44 Identities=34% Similarity=0.664 Sum_probs=38.3
Q ss_pred HHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 123 l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|++.|||.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 67899999999999986543 578999999999999999999985
No 116
>KOG4210|consensus
Probab=99.03 E-value=4.1e-10 Score=82.68 Aligned_cols=154 Identities=23% Similarity=0.277 Sum_probs=122.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCC-CccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRP-HNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~-~~~~~~~i~v~~~ 92 (172)
....+.+++++...+.+.+...++..+|......+........++|++++.|...+.+..|+.... ..+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357889999999999999999999999988888777766678899999999999999999999854 3444444443333
Q ss_pred CCCCCC----CCCccccccceEE-EeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 93 VPRDEI----GKPEANATVKKMF-VGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 93 ~~~~~~----~~~~~~~~~~~l~-v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
...... ..........+++ +++++. +++++|+..|..+|.|..+++..++.++...|+|++.|.+...+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 222211 1111223334455 999999 9999999999999999999999999999999999999999999999987
Q ss_pred H
Q psy17262 167 K 167 (172)
Q Consensus 167 ~ 167 (172)
.
T Consensus 246 ~ 246 (285)
T KOG4210|consen 246 D 246 (285)
T ss_pred c
Confidence 4
No 117
>KOG0415|consensus
Probab=99.01 E-value=6.1e-10 Score=81.82 Aligned_cols=68 Identities=28% Similarity=0.507 Sum_probs=63.2
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.+.|||--|.+ ++.++|.-+|+.||.|.++.++++..||.+..||||+|.+.++..+|.-+|++-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv 304 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV 304 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce
Confidence 34567899999999 899999999999999999999999999999999999999999999999998764
No 118
>KOG4661|consensus
Probab=99.00 E-value=1.7e-09 Score=84.06 Aligned_cols=81 Identities=21% Similarity=0.476 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
....|.|||.+|...+...||+++|++||.|.-.+++.+-.+.-.+.|+||++.+.++|.+||+. +...+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 45678999999999999999999999999999999998877777889999999999999999999 89999999999987
Q ss_pred cC
Q psy17262 92 AV 93 (172)
Q Consensus 92 ~~ 93 (172)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 65
No 119
>KOG4676|consensus
Probab=99.00 E-value=3.7e-10 Score=83.81 Aligned_cols=151 Identities=10% Similarity=0.070 Sum_probs=114.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC---CccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
..|.|.||.|.+|.++++.+|..+|.|.++.++.+.... .....|||.|.+..++..|....+..+-++.+.|.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 488999999999999999999999999999998865332 24578999999999999998876666666666665443
Q ss_pred CCCCC-----------------------------C---------------------CCccccccceEEEeCCCC-CCHHH
Q psy17262 94 PRDEI-----------------------------G---------------------KPEANATVKKMFVGGLKD-QEEDD 122 (172)
Q Consensus 94 ~~~~~-----------------------------~---------------------~~~~~~~~~~l~v~~l~~-~~~~~ 122 (172)
..... . ........++++|.+|+. |...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 22110 0 000011235789999998 99999
Q ss_pred HHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 123 LREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 123 l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.+.|..+|+|.+..+-.. ....+|-++|....+...|+...+-.
T Consensus 168 ~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre 212 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRE 212 (479)
T ss_pred hhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchh
Confidence 9999999999999877543 33346789999999999998876643
No 120
>KOG4660|consensus
Probab=98.98 E-value=8.2e-10 Score=85.25 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=98.5
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
......-..++|+|.|||..+++++|++.|+.||+|..++. |...+|..||+|.|..+|++|+++ ++.++.|+.
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 33344567899999999999999999999999999998654 455689999999999999999999 888999988
Q ss_pred EEeeecCCCCCC----------------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccc
Q psy17262 87 VETKRAVPRDEI----------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRG 149 (172)
Q Consensus 87 i~v~~~~~~~~~----------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g 149 (172)
++...+...... ......-+...++.. |++ .+...+...++.+|.+.. +- ++.-..
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~h 214 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----TPLLNH 214 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----ccchhh
Confidence 873322221110 111222223344444 666 666666666667776555 32 122222
Q ss_pred eEEEEeCCHHHHHHHH
Q psy17262 150 FAFIEFNDYDVVDKIV 165 (172)
Q Consensus 150 ~afv~f~~~~~a~~A~ 165 (172)
--+++|.+..++..+.
T Consensus 215 q~~~~~~~~~s~a~~~ 230 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSE 230 (549)
T ss_pred hhhhhhccccchhhcc
Confidence 4567777777764443
No 121
>KOG0116|consensus
Probab=98.98 E-value=2.5e-09 Score=81.85 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=67.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
...+|||+|||+++++++|+++|..||+|....|......+....||||+|.+.++++.+++++...+.++.+.|.-..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34559999999999999999999999999988775432233344899999999999999999998999999999986554
Q ss_pred C
Q psy17262 95 R 95 (172)
Q Consensus 95 ~ 95 (172)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 122
>KOG0112|consensus
Probab=98.92 E-value=8.9e-10 Score=89.20 Aligned_cols=145 Identities=17% Similarity=0.328 Sum_probs=111.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.+...+++|+++||+..+++.+|+..|..+|.+.++.+=.-+ .+.-.-|||+.|.+-+.+-.|... .+..|....+.+
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 445678999999999999999999999999999888764322 334445899999998888777766 444444334444
Q ss_pred eecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 90 KRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
....+ .....+.+++++|+. .....|..+|..||.|..|.+-. ...||+|.|.+...|+.|+..+
T Consensus 446 glG~~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 446 GLGQP--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccccc--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHH
Confidence 43332 334567899999988 78889999999999999987632 2338999999999999999877
Q ss_pred CC
Q psy17262 169 NI 170 (172)
Q Consensus 169 ~~ 170 (172)
-|
T Consensus 512 rg 513 (975)
T KOG0112|consen 512 RG 513 (975)
T ss_pred hc
Confidence 54
No 123
>KOG0533|consensus
Probab=98.92 E-value=9.7e-09 Score=73.19 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
....+..|+|.|||+.++.+||+++|..||.+..+-+.+++ .+.+.|.|-|.|...++|..+++. ++..++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556889999999999999999999999999999999998 899999999999999999999998 8899999998887
Q ss_pred ecCCCC
Q psy17262 91 RAVPRD 96 (172)
Q Consensus 91 ~~~~~~ 96 (172)
...+..
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 665443
No 124
>KOG4208|consensus
Probab=98.91 E-value=4.6e-09 Score=71.84 Aligned_cols=66 Identities=29% Similarity=0.505 Sum_probs=59.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcc-cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....+++..+|. +.+.++...|..+ |.|...++.++..||.++|||||+|.+.+.|.-|-+.||+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN 114 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN 114 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh
Confidence 3445789999999 9999999999988 7778888889999999999999999999999999999886
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.90 E-value=2.5e-08 Score=61.29 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc--CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC----CeEEEe
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID----GRVVET 89 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~----~~~i~v 89 (172)
++|+|+|||...|.++|.+.+... |...-+.++.+..++.+.|||||.|.+++.|...... ++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998754 6677778888887888999999999999999999988 776664 344555
Q ss_pred eecC
Q psy17262 90 KRAV 93 (172)
Q Consensus 90 ~~~~ 93 (172)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 126
>KOG4206|consensus
Probab=98.84 E-value=1.7e-08 Score=70.03 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=55.4
Q ss_pred cceEEEeCCCC-CCHHHHHH----HHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLRE----YFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+|||.||+. +..++|+. +|+.||.|..|.... +...||-|||.|++.+.|..|+..|+|-
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCC
Confidence 34999999999 99988887 999999999998764 4678999999999999999999999984
No 127
>KOG0105|consensus
Probab=98.82 E-value=7.3e-09 Score=69.81 Aligned_cols=61 Identities=21% Similarity=0.530 Sum_probs=51.8
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..+++||+|||. +-+.+|..+|-+||.|..|.+--.+ .+..||||+|+++-+|..|+..-+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhccc
Confidence 457899999999 9999999999999999999875332 335699999999999999987544
No 128
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=8.3e-08 Score=59.04 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=57.0
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhc--ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|.|+|+|. .+.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|.+-.+.++|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 5899999999 999999999874 467777888889889999999999999999999999988874
No 129
>KOG4307|consensus
Probab=98.77 E-value=3e-08 Score=78.73 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=113.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
....+.+-+.+.+.+.++.|++.||... .+....+..++..+...|.++|.|....+++.|++.+....-.+.+.+-+.
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPP 386 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCC
Confidence 3455666778999999999999998654 355666666664555579999999999999999998777777777777554
Q ss_pred CCCCCC---------------------------------CCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEE
Q psy17262 93 VPRDEI---------------------------------GKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNM 138 (172)
Q Consensus 93 ~~~~~~---------------------------------~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~ 138 (172)
....-. ....-.....+|||..||. ++...+...|...-.|+....
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 322100 0011123346899999999 888999999998878888444
Q ss_pred eecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 139 VTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 139 ~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
+....++..++.|||+|.+++++-.|+.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred eccCCcccccchhhheeccccccchhhh
Confidence 4444567889999999999888877764
No 130
>KOG0132|consensus
Probab=98.70 E-value=3.5e-08 Score=79.16 Aligned_cols=59 Identities=31% Similarity=0.531 Sum_probs=54.2
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
-+++|||++++. +++.+|..+|+.||.|.++.+ ..++++|||.+...++|.+|+.+|.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l------i~~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL------IPPRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee------ccCCceeEEEEeehhHHHHHHHHHhc
Confidence 467999999999 999999999999999999988 45688999999999999999999863
No 131
>KOG4209|consensus
Probab=98.65 E-value=6.7e-08 Score=68.94 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=76.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
.....+.+||+|+...+|.+++...|+.+|.+..+.+..+..+++++|+|||+|.+.+.+..++..++..+.|+.+.+.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 34677899999999999999999999999999999999999888899999999999999999999999999999999887
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6544
No 132
>KOG0226|consensus
Probab=98.61 E-value=7.3e-08 Score=68.07 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=77.1
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
+-...+...-+||.+.|..+++.+-|...|.+|-....-+++++..|++++||+||.|.+++++.+|+.+ ++..+..++
T Consensus 182 sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 182 SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 3344556778999999999999999999999999989999999999999999999999999999999998 888888898
Q ss_pred EEeeecCC
Q psy17262 87 VETKRAVP 94 (172)
Q Consensus 87 i~v~~~~~ 94 (172)
|+++.+.-
T Consensus 262 iklRkS~w 269 (290)
T KOG0226|consen 262 IKLRKSEW 269 (290)
T ss_pred hHhhhhhH
Confidence 88875543
No 133
>KOG4661|consensus
Probab=98.58 E-value=1.4e-07 Score=73.62 Aligned_cols=64 Identities=22% Similarity=0.470 Sum_probs=58.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..+.|||.+|.. +-..+|+.+|++||.|.-.+++.+..+...++|+||++++.++|.++|..|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH 468 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH 468 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh
Confidence 357899999999 6678999999999999999999988777889999999999999999999886
No 134
>KOG0151|consensus
Probab=98.53 E-value=5.2e-07 Score=72.04 Aligned_cols=80 Identities=15% Similarity=0.293 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT---KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
...+.+||+||++.++++.|..-|..||++..++++.-+.. ...+.++||.|.+..+|++|+.. ++..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45678999999999999999999999999999999865522 23456899999999999999999 888888888888
Q ss_pred eecC
Q psy17262 90 KRAV 93 (172)
Q Consensus 90 ~~~~ 93 (172)
-|+.
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 8874
No 135
>KOG0128|consensus
Probab=98.51 E-value=6.9e-09 Score=83.77 Aligned_cols=157 Identities=20% Similarity=0.167 Sum_probs=122.3
Q ss_pred CcceEEEcCCCCCCCHH-HHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDE-SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~-~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
..+...+.++.+..... ..++.|..+|.+..++.......-.....+++.+....+++.+....+..+.++...+..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34556677887776555 67889999999999988764322223337889999999999998888788888888887776
Q ss_pred CCCCCCCCccc----cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 94 PRDEIGKPEAN----ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 94 ~~~~~~~~~~~----~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
+.......... ....++|++||+. ..+.+|...|..+|.+..+++.....++..+|+|++.|..++.+.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 65533222221 2345789999999 999999999999999999988867778899999999999999999999877
Q ss_pred CCC
Q psy17262 169 NIE 171 (172)
Q Consensus 169 ~~~ 171 (172)
.+.
T Consensus 730 d~~ 732 (881)
T KOG0128|consen 730 DSC 732 (881)
T ss_pred hhh
Confidence 654
No 136
>KOG4660|consensus
Probab=98.48 E-value=2.2e-07 Score=72.16 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=57.1
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.+.++|+|-|||. ++.++|+.+|+.||+|..++.. -..+|.+||+|-|.-+|++|+.+|+++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~ 135 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRR 135 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHH
Confidence 3467788999999999 9999999999999999997653 455789999999999999999999863
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=1.4e-06 Score=51.48 Aligned_cols=69 Identities=13% Similarity=0.296 Sum_probs=46.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhh----c-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQ----W-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~----~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
..|+|.|||.+.+...|+..+.+ + |.|..+ +.+.|.|.|.+++.|.+|... .+-.+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 35899999999999887776664 4 456655 237899999999999999999 8889999999999
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 77543
No 138
>KOG0116|consensus
Probab=98.45 E-value=3.2e-07 Score=70.53 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=52.4
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
..|||.|||. ++..+|.++|..||.|+...|......+...+||||+|.+.++++.|+.+-
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 4599999999 999999999999999999988765433444489999999999999999753
No 139
>KOG0153|consensus
Probab=98.45 E-value=5.2e-07 Score=66.42 Aligned_cols=62 Identities=32% Similarity=0.707 Sum_probs=54.0
Q ss_pred CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
+..+....+|||++|.. +++.+|+..|-.||+|.++.++.. +++|||+|.+.++|..|..+.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhh
Confidence 44566678999999988 999999999999999999998754 348999999999999998764
No 140
>KOG1457|consensus
Probab=98.40 E-value=2.6e-06 Score=59.39 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=54.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEee-cCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVT-NKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||.+||. +...+|..+|.+|.+-+...+-. +......+-+||+.|.+.++|..|+.+|||-
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 45578999999999 99999999999997777664422 2222334568999999999999999999983
No 141
>KOG2193|consensus
Probab=98.40 E-value=4.7e-08 Score=73.65 Aligned_cols=135 Identities=19% Similarity=0.370 Sum_probs=104.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccCCeEEEeeecC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAV 93 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~~~i~v~~~~ 93 (172)
..+|++||.+.++.+||...|...-. ...-.++ ..||+||...+..-|.+|++. ...++.|..+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 35899999999999999999976521 1111222 248999999999999999998 3467889998888776
Q ss_pred CCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
++.. .++++-++|+|. ..++.|..++..||.+.++..+ .++.+ -..-|.|.+.+.++.|+.++||
T Consensus 75 ~kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 75 PKKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred hHHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 6543 345689999999 9999999999999999998753 22221 1234788999999999999986
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.39 E-value=7.8e-07 Score=55.87 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=35.8
Q ss_pred eEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 109 ~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.|++.+++. ++.++|+..|+.||.|.++.+.... ..|+|+|.++++|+.|+.++
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHH
Confidence 578888887 8999999999999999999886543 25999999999999999865
No 143
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.39 E-value=2.6e-06 Score=62.79 Aligned_cols=110 Identities=20% Similarity=0.334 Sum_probs=78.9
Q ss_pred ceEEEcCCCCCCCHHHH------HHHHhhcCceeEEEEEecCCCC-CccceE--EEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 17 RKVFIGGLDYRTTDESL------QAFFEQWGEIVDVVVMKDPITK-RSRGFG--FITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l------~~~f~~~G~v~~~~~~~~~~~~-~~~g~a--fv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
.-+||.+||+.+..+++ .++|.+||.|.+|.+.+.-... ...+++ ||+|.+.++|.+|+.. ++..++|+-
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999988766652 5699999999988776532111 122334 9999999999999999 999999999
Q ss_pred EEeeecCCCCC--CCCCccccccceEEEeCCCC----CCHHHHHHH
Q psy17262 87 VETKRAVPRDE--IGKPEANATVKKMFVGGLKD----QEEDDLREY 126 (172)
Q Consensus 87 i~v~~~~~~~~--~~~~~~~~~~~~l~v~~l~~----~~~~~l~~~ 126 (172)
|+..+.+.+-- ...........++|+..-.. .+.++|...
T Consensus 195 lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 195 LKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred EeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 99998876521 22233445566888876543 667766544
No 144
>KOG0533|consensus
Probab=98.37 E-value=1.8e-06 Score=61.76 Aligned_cols=66 Identities=30% Similarity=0.451 Sum_probs=59.5
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....+|+|.|||. +..++|+++|..||.+..+-+..++ .|.+.|.|-|.|...++|.+|+..+|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC
Confidence 34456899999999 9999999999999999998888776 578889999999999999999999987
No 145
>KOG4209|consensus
Probab=98.36 E-value=7.4e-07 Score=63.65 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=60.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....+.+|++|+.. ++.+++...|+.||.+..+.++.+..++.++|++||+|.+.+.++.|+. ||+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs 165 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS 165 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc
Confidence 344567899999999 8888899999999999999999999888899999999999999999999 6654
No 146
>KOG0151|consensus
Probab=98.33 E-value=1.2e-06 Score=69.99 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=60.0
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
+.....|||+||++ ++++.|...|..||+|..++++..... ...+.++||.|-+..+|++|+..|+|.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 44567899999999 999999999999999999999876432 3457789999999999999999999863
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.22 E-value=5.5e-06 Score=52.04 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=36.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
..|++.+++..++.++|++.|+.||+|..|.+.... ..|||.|.+++.|+.|++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~ 56 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEK 56 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHH
Confidence 468899999999999999999999998888776532 4799999999999999986
No 148
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.14 E-value=9.8e-06 Score=44.33 Aligned_cols=53 Identities=25% Similarity=0.455 Sum_probs=42.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHH
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAM 75 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 75 (172)
++.|-|.|.+++..+. +...|..||+|..+.+.. ...+.||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 3568899999887754 455888999999988762 3358999999999999985
No 149
>KOG4454|consensus
Probab=98.12 E-value=1.8e-06 Score=59.97 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=57.9
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||.|+.. ++++.|.++|-.-|.|..+.|..+++. ..+ +|||+|.++.+..-|++-+||.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccc
Confidence 34457999999999 999999999999999999998877654 445 9999999999999999999873
No 150
>KOG1995|consensus
Probab=98.09 E-value=7.9e-06 Score=60.64 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~ 78 (172)
+........-+|||-+||..+++++|.++|.++|.|. .|++..++.|...++-|.|.|.++..|+.|+.- +
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 4444466778899999999999999999999998764 577788888999999999999999999999998 8
Q ss_pred CCccCCeEEEeeecCCC
Q psy17262 79 PHNIDGRVVETKRAVPR 95 (172)
Q Consensus 79 ~~~~~~~~i~v~~~~~~ 95 (172)
+..+.+..|+|..+...
T Consensus 138 gkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERR 154 (351)
T ss_pred cccccCCCchhhhhhhc
Confidence 88888888888766543
No 151
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.07 E-value=2.2e-05 Score=48.67 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEE-ecC------CCCCccceEEEEECCHHHHHHHHhcCCCccCCe-
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVM-KDP------ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR- 85 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~-~~~------~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~- 85 (172)
...+-|.|-|.|+. ....|.+.|++||.|.+..-. .+. .......+-.|+|.++.+|.+||..++..+.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34567899999988 668899999999998777410 000 011234689999999999999999999999885
Q ss_pred EEEeeec
Q psy17262 86 VVETKRA 92 (172)
Q Consensus 86 ~i~v~~~ 92 (172)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4556655
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=2.4e-05 Score=46.28 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=36.9
Q ss_pred ceEEEeCCCC-CCHH----HHHHHHhcccc-eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEED----DLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~----~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..|+|.|||. .+.. -|++++..+|+ |..+ +.+.|+|.|.+.+.|.+|...|+|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 3689999998 6654 46677778865 3333 1246999999999999999999975
No 153
>KOG4210|consensus
Probab=97.97 E-value=9.4e-06 Score=59.91 Aligned_cols=83 Identities=27% Similarity=0.506 Sum_probs=72.5
Q ss_pred CCCcceEE-EcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 13 PESLRKVF-IGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~-v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
...+.+++ |.+++.++++++|+..|..+|.|..+++...+.++..+|+||+.|.+...+..++......+.++++.+..
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEE 260 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccccccc
Confidence 34455566 99999999999999999999999999999999999999999999999999999988656778888888877
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
..+.
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 6554
No 154
>KOG4849|consensus
Probab=97.97 E-value=7.7e-06 Score=60.58 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.....+||+||-+.+|.+||...+...| .+.+++++.++..|.++|||.+...+..+.+..|+. -...|.|+.-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 4456789999999999999999999988 588999999999999999999999999999999987 5567777655554
No 155
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.93 E-value=0.00011 Score=41.19 Aligned_cols=56 Identities=14% Similarity=0.373 Sum_probs=47.3
Q ss_pred ccceEEEeCCCCCCHHHHHHHHhcc---cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 106 TVKKMFVGGLKDQEEDDLREYFSQF---GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 106 ~~~~l~v~~l~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
....|+|+|+..++.++++.+|..| .....+.++.|. .|-|-|.+.+.|.+||.+|
T Consensus 4 rpeavhirGvd~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4568999999999999999999988 346678887663 4889999999999999875
No 156
>KOG2314|consensus
Probab=97.89 E-value=4.8e-05 Score=59.77 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=55.5
Q ss_pred cccceEEEeCCCCCCH-------HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKDQEE-------DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~~~~-------~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.--..++|.|.|-+.. ..|..+|+++|.+....++.+..+| .+|+.|++|.+..+|+.|+..+||.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccc
Confidence 3345789999998443 3467889999999999998887655 8999999999999999999999984
No 157
>KOG0106|consensus
Probab=97.87 E-value=1.1e-05 Score=56.60 Aligned_cols=56 Identities=29% Similarity=0.603 Sum_probs=50.1
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+||+++|. +.+.+|..+|..||.+..+.+. .|++||+|.+.-+|..|+..+|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~ 58 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGK 58 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCc
Confidence 3689999999 9999999999999999998764 347899999999999999988874
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.84 E-value=9.4e-05 Score=40.42 Aligned_cols=52 Identities=15% Similarity=0.381 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 108 KKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 108 ~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
+.|-|.|.+.-..+.+...|..||+|..+.+. ....+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 45778888886667788899999999998874 22347999999999999985
No 159
>KOG1548|consensus
Probab=97.79 E-value=0.0001 Score=54.62 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=54.9
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..|||.|||. +|-+++.++|++||.|.+ |++-++.. |..+|=|++.|.-.++..-|+..|++.
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcc
Confidence 4599999999 999999999999998876 45666654 888999999999999999999998863
No 160
>KOG4307|consensus
Probab=97.76 E-value=0.00013 Score=58.88 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=63.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCcee-EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
..+.|-+.|.|++++.+||-+||..|-.+- +|.+.++. .+...|-|-|.|++.++|.+|... ++..|..+.|++..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345788999999999999999999996543 44554544 788999999999999999999988 88899999888753
No 161
>KOG3152|consensus
Probab=97.74 E-value=2e-05 Score=56.04 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=59.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC--------CCcc----ceEEEEECCHHHHHHHHhc-CCCc
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT--------KRSR----GFGFITYSEAKMVDDAMSN-RPHN 81 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~~----g~afv~f~~~~~a~~a~~~-~~~~ 81 (172)
..-.||+++|||.+....|+++|+.||.|-.+.+-....+ +.++ .-|+|+|.+...|.++... ++..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999988766544 2222 2368999999999999888 8888
Q ss_pred cCCeE
Q psy17262 82 IDGRV 86 (172)
Q Consensus 82 ~~~~~ 86 (172)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88765
No 162
>KOG1855|consensus
Probab=97.64 E-value=8e-05 Score=56.67 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=56.4
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeec---CCCCC----------ccceEEEEeCCHHHHHHHHHHh
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN---KETGA----------KRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~----------~~g~afv~f~~~~~a~~A~~~~ 168 (172)
...+.++|.+.|||. -..+-|.++|+.+|.|+.|+|+.. +.+.. .+-+|+|+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 345789999999999 777999999999999999999876 32211 2567999999999999999988
Q ss_pred CC
Q psy17262 169 NI 170 (172)
Q Consensus 169 ~~ 170 (172)
|.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 63
No 163
>KOG0129|consensus
Probab=97.53 E-value=0.00056 Score=53.37 Aligned_cols=82 Identities=32% Similarity=0.417 Sum_probs=68.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh-hcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCcc----CCeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI----DGRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~----~~~~i~ 88 (172)
++.++|||++||.-++.++|..+|+ -||.|.-+-|-.++.-+..+|.|=|+|.+..+--+||+..-..+ ..+.|.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVE 447 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVE 447 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeee
Confidence 5789999999999999999999999 78999999998887778899999999999999999998733333 235677
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|++....
T Consensus 448 IkPYv~e 454 (520)
T KOG0129|consen 448 IKPYVME 454 (520)
T ss_pred ecceecc
Confidence 7766533
No 164
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.34 E-value=0.0013 Score=39.06 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=41.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
.|...+..+|+ .|..+...||.++|+.||.|.--.+ .+ .-|||...+.+.|..++..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHH
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHH
Confidence 34455566666 9999999999999999999754444 33 3799999999999998876
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.28 E-value=0.0015 Score=43.07 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=45.3
Q ss_pred HHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCCC
Q psy17262 32 SLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 32 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~ 95 (172)
+|.+.|..||++.-++++. +.-+|+|.+-++|.+|+..++..+.|+.++|+...+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 6778888999988777765 3579999999999999999999999999999876543
No 166
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.19 E-value=0.0057 Score=34.36 Aligned_cols=54 Identities=15% Similarity=0.356 Sum_probs=44.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhc----CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQW----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
....|+|+|+ .+++.+||+.+|..| ++ ..+..+.+. -|-|.|.+.+.|.+||..
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 3467999998 568899999999999 54 567777664 689999999999999864
No 167
>KOG2314|consensus
Probab=97.17 E-value=0.00075 Score=53.31 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCcceEEEcCCCCC--CCHHH----HHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC-Ce
Q psy17262 14 ESLRKVFIGGLDYR--TTDES----LQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GR 85 (172)
Q Consensus 14 ~~~~~v~v~nlp~~--~t~~~----l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-~~ 85 (172)
.-...|.|.|+|.- ...+. |..+|+++|++..+.++.+..+| ++||.|++|.+..+|+.|++. ++..++ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34566788998743 23333 45688999999999999887555 999999999999999999998 777765 35
Q ss_pred EEEee
Q psy17262 86 VVETK 90 (172)
Q Consensus 86 ~i~v~ 90 (172)
...+.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 66654
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.15 E-value=0.0014 Score=40.66 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCCHHHHHHHHhcccceeEEE-EeecC------CCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 107 VKKMFVGGLKDQEEDDLREYFSQFGTIESVN-MVTNK------ETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 107 ~~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~-~~~~~------~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..-|.|-+.|......+.+.|++||.|.... +.++. .......+..|+|+++.+|++||.+.+
T Consensus 6 ~~wVtVFGfp~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG 75 (100)
T PF05172_consen 6 ETWVTVFGFPPSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG 75 (100)
T ss_dssp CCEEEEE---GGGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT
T ss_pred CeEEEEEccCHHHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC
Confidence 3458888999888888999999999998874 11110 012334589999999999999998754
No 169
>KOG0115|consensus
Probab=97.09 E-value=0.0023 Score=45.86 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=64.5
Q ss_pred CCCccCCeEEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeC
Q psy17262 78 RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN 156 (172)
Q Consensus 78 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~ 156 (172)
++.-..++.+.|.++.- ..|||.||.. ++.+.+.+.|+.||.|....+..|. .+...+-++|+|.
T Consensus 15 d~~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~ 80 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFA 80 (275)
T ss_pred CCCCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhh
Confidence 66777889999998854 2699999999 9999999999999999986555443 3677778999999
Q ss_pred CHHHHHHHHHHh
Q psy17262 157 DYDVVDKIVCKY 168 (172)
Q Consensus 157 ~~~~a~~A~~~~ 168 (172)
..-.|.+|+...
T Consensus 81 ~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 81 KKPNARKAARRC 92 (275)
T ss_pred cchhHHHHHHHh
Confidence 999999998766
No 170
>KOG1995|consensus
Probab=97.07 E-value=0.001 Score=49.67 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=57.0
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....++||-++|. ++++++..+|..+|.|.. +.+-++..|+.+++-|.|.|.+...|+.|+.-+++
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 3445899999999 999999999999988765 34556778999999999999999999999987765
No 171
>KOG1996|consensus
Probab=97.00 E-value=0.0024 Score=46.64 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHhcccceeEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 121 DDLREYFSQFGTIESVNMVTNKETGA-KRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 121 ~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
+++.+.+++||.|.++.|.-.+.-.. .--..||+|...++|.+|+-.|||+|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 56888999999999987765431111 12247999999999999999999986
No 172
>KOG1855|consensus
Probab=96.90 E-value=0.0013 Score=50.33 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEec---CCCC--C--------ccceEEEEECCHHHHHHHH
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD---PITK--R--------SRGFGFITYSEAKMVDDAM 75 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~--~--------~~g~afv~f~~~~~a~~a~ 75 (172)
.+.+.-++++|.+.|||.+-.-+.|..+|+.+|.|..|+|..- +... . .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3444468999999999999999999999999999999999764 2121 1 2457999999999999999
Q ss_pred hcC
Q psy17262 76 SNR 78 (172)
Q Consensus 76 ~~~ 78 (172)
+..
T Consensus 304 e~~ 306 (484)
T KOG1855|consen 304 ELL 306 (484)
T ss_pred Hhh
Confidence 873
No 173
>KOG2202|consensus
Probab=96.84 E-value=0.0006 Score=48.71 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=50.6
Q ss_pred HHHHHHHh-hcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 31 ESLQAFFE-QWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 31 ~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
+|+...++ +||+|.++.+..+. .-.-.|-.||.|...++|++|++. ++.-+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 89999999887665 444678999999999999999999 8899999999987664
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.83 E-value=0.006 Score=39.98 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCcceEEEcCCCCCC----CHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 13 PESLRKVFIGGLDYRT----TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
..+-.+|.|+=|..++ +...+...++.||+|.++.+. .+..|-|.|++..+|..|+.+-.....|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 3456677776666555 334566677889999998765 34579999999999999999965678888888
Q ss_pred eeecC
Q psy17262 89 TKRAV 93 (172)
Q Consensus 89 v~~~~ 93 (172)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87765
No 175
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=96.83 E-value=0.002 Score=38.91 Aligned_cols=68 Identities=18% Similarity=0.322 Sum_probs=48.5
Q ss_pred EEEEECCHHHHHHHHhc--CCCccCCeEEEeeecCCCCCCCCC---ccccccceEEEeCCCC-CCHHHHHHHHh
Q psy17262 61 GFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVPRDEIGKP---EANATVKKMFVGGLKD-QEEDDLREYFS 128 (172)
Q Consensus 61 afv~f~~~~~a~~a~~~--~~~~~~~~~i~v~~~~~~~~~~~~---~~~~~~~~l~v~~l~~-~~~~~l~~~f~ 128 (172)
|.|+|.++.-|++.+.. ....+.+..+.|..+......... ......+++.|.|+|. .++++|+..++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999998 455667766666544333222211 2345678999999999 99998887654
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.81 E-value=0.015 Score=34.56 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=38.0
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
...++. .|. |...+|.++|++||.|.- .++.+ . .|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d----T---SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND----T---SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT----T---EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC----C---cEEEEeecHHHHHHHHHHhc
Confidence 445665 788 999999999999998753 34432 2 59999999999999887664
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.75 E-value=0.0098 Score=39.01 Aligned_cols=62 Identities=29% Similarity=0.399 Sum_probs=46.4
Q ss_pred ccccccceEEEeCCCC--CCHHHH---HHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 102 EANATVKKMFVGGLKD--QEEDDL---REYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~--~~~~~l---~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+.+..+|.|+=|.. -..+++ .+.++.||+|.++... ++..|.|.|.+..+|.+|+.+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC
Confidence 3455667888887765 334444 4556789999998764 234699999999999999998874
No 178
>KOG4849|consensus
Probab=96.75 E-value=0.0026 Score=47.56 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=53.5
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhccc--ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.....++||+||-| +|.++|.+.+...| .+..+++.-+..+|.++|||+|-..+..+..+.++.|.
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 44556899999999 88899988887654 55667777788889999999999998888888776553
No 179
>KOG3152|consensus
Probab=96.66 E-value=0.0013 Score=47.01 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=53.5
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCC--------CCc----cceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET--------GAK----RGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~----~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|++++|+ +...-|+++|+.||.|-++.+.....+ +.+ -.-|+|+|.+.-.|.+.-..||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345799999999 999999999999999999988654332 111 223789999999999999999874
No 180
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.65 E-value=0.0061 Score=45.49 Aligned_cols=65 Identities=14% Similarity=0.378 Sum_probs=47.0
Q ss_pred ceEEEeCCCC-CCHHH------HHHHHhcccceeEEEEeecCCC--CCccce-EEEEeCCHHHHHHHHHHhCCCC
Q psy17262 108 KKMFVGGLKD-QEEDD------LREYFSQFGTIESVNMVTNKET--GAKRGF-AFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~------l~~~f~~~g~v~~~~~~~~~~~--~~~~g~-afv~f~~~~~a~~A~~~~~~~~ 172 (172)
+-+||-++|. +..++ -.++|..||.|..+.+-+.-.+ .....+ .+|.|.+.|+|.++++..+|++
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 4579999988 55544 2478999999999877543211 111223 4999999999999999998864
No 181
>KOG2202|consensus
Probab=96.61 E-value=0.00092 Score=47.81 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=40.5
Q ss_pred HHHHHHHh-cccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 121 DDLREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 121 ~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
+++...++ +||+|+.+.+..+.. .--+|-++|.|...++|++|++.||+.|
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 44555566 899999987765432 3457789999999999999999999875
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.57 E-value=0.002 Score=44.40 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=46.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhh-cCce---eEEEEEecC-CCCC-ccceEEEEECCHHHHHHHHhc-CCCccCC-
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQ-WGEI---VDVVVMKDP-ITKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDG- 84 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v---~~~~~~~~~-~~~~-~~g~afv~f~~~~~a~~a~~~-~~~~~~~- 84 (172)
......|.|+.|||..|++++.+.+.. ++.. ..+.-.... .... ....|||.|.+.+++...... ++..+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345668999999999999999997776 6654 223211211 1111 345799999999998888877 5554422
Q ss_pred ----eEEEeeecCCC
Q psy17262 85 ----RVVETKRAVPR 95 (172)
Q Consensus 85 ----~~i~v~~~~~~ 95 (172)
....|..+...
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 34455555543
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.37 E-value=0.099 Score=33.09 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=45.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
.+..+.+...|..++.++|..+.+.+- .|..++++++. ..++--+.+.|.+.+.|...... +|..+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 333344444444455567776766664 47788888853 23555678999999999999988 776654
No 184
>KOG2068|consensus
Probab=96.36 E-value=0.0016 Score=48.42 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=74.4
Q ss_pred cceEEEcCCCCCCCHHHH---HHHHhhcCceeEEEEEecCC--CCC-ccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 16 LRKVFIGGLDYRTTDESL---QAFFEQWGEIVDVVVMKDPI--TKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l---~~~f~~~G~v~~~~~~~~~~--~~~-~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.+-+||.+|++....+.+ .++|.+||.|.++.+..+.. .+. .-.-+||+|...++|..|+.. ++..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788999888654444 34889999999998887652 111 112379999999999999999 88999999888
Q ss_pred eeecCCCCCCC--CCccccccceEEEeCCCC----CCHHHHHHH
Q psy17262 89 TKRAVPRDEIG--KPEANATVKKMFVGGLKD----QEEDDLREY 126 (172)
Q Consensus 89 v~~~~~~~~~~--~~~~~~~~~~l~v~~l~~----~~~~~l~~~ 126 (172)
....+++.... .........++|+.-+.. ++.++++..
T Consensus 157 a~~gttkycs~~l~~~~c~~~~cmylhe~~~~~Ds~~k~e~~~~ 200 (327)
T KOG2068|consen 157 ASLGTTKYCSFYLRNDICQNPDCMYLHEIGDQEDSFTKDEMKSA 200 (327)
T ss_pred HhhCCCcchhHHhhhhcccCccccccccccccccccchHHHHHH
Confidence 77776654321 111223333677766643 556655544
No 185
>KOG2416|consensus
Probab=96.34 E-value=0.0051 Score=49.12 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=61.3
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhc-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc---
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI--- 82 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~--- 82 (172)
+.+.-...++.|+|.||-.-.|.-+|+.++.+- |.|.+.+|-. -+.+|||.|.+.++|.+..+. ++..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 344455778999999999999999999999965 5666665433 357899999999999999988 66665
Q ss_pred CCeEEEeeecC
Q psy17262 83 DGRVVETKRAV 93 (172)
Q Consensus 83 ~~~~i~v~~~~ 93 (172)
+++.|.+.+..
T Consensus 510 NPK~L~adf~~ 520 (718)
T KOG2416|consen 510 NPKHLIADFVR 520 (718)
T ss_pred CCceeEeeecc
Confidence 34566666544
No 186
>KOG0112|consensus
Probab=96.34 E-value=0.0066 Score=50.64 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=62.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i~ 88 (172)
.....+++++++|++++....|...|..||.|..|.+-. ..-||||.|.+...++.|++. .+..+.+ +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 456788999999999999999999999999998876644 236999999999999999987 5555543 5566
Q ss_pred eeecCC
Q psy17262 89 TKRAVP 94 (172)
Q Consensus 89 v~~~~~ 94 (172)
|.++.+
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 665543
No 187
>KOG2416|consensus
Probab=96.09 E-value=0.006 Score=48.70 Aligned_cols=62 Identities=8% Similarity=0.179 Sum_probs=50.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHh-cccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFS-QFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
-...++.|||.||-. +|.-+|+.++. ..|.|... |+.. -+..|||.|.+.++|.....+|||
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhc
Confidence 455678899999998 99999999999 56666665 5532 234699999999999999999987
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.92 E-value=0.21 Score=31.58 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=44.7
Q ss_pred ceEEEeCCC-C-CCHHHHHHHHhcc-cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLK-D-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~-~-~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.+-..| . ++.++|..+...+ ..|..++++++. ..++-.++++|.+.++|..-...+||.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC
Confidence 344444444 4 6667777666665 466678888875 334556899999999999999999985
No 189
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=95.91 E-value=0.016 Score=38.76 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHhhc-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCCCCCCCCCcccc
Q psy17262 27 RTTDESLQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANA 105 (172)
Q Consensus 27 ~~t~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 105 (172)
..+...|.+.+... +....+.+..- ..++..+.|.+.+++..++......+.+..+.+....+...........
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~ 102 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEH 102 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceec
Confidence 46677777777653 43323333322 2468899999999999999988888889888888776544332222222
Q ss_pred ccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEe
Q psy17262 106 TVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMV 139 (172)
Q Consensus 106 ~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~ 139 (172)
..-=+.+.|||. ++++-++++.+.+|.+..+...
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 223367889998 9999999999999999998754
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.84 E-value=0.015 Score=40.10 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhc-ccce---eEEEEeec--CCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQ-FGTI---ESVNMVTN--KETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~-~g~v---~~~~~~~~--~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...+|.|++||+ .+++++.+.+++ ++.- .++....+ ......-..|+|.|.+.+++..-...++|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 345899999999 999999987776 5555 23331122 11111233599999999999988888876
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.76 E-value=0.54 Score=34.77 Aligned_cols=161 Identities=11% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC-------CccceEEEEECCHHHHHHHHhc----
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK-------RSRGFGFITYSEAKMVDDAMSN---- 77 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~-------~~~g~afv~f~~~~~a~~a~~~---- 77 (172)
...+.-..|.|...|+..+++...+-.-|-+||+|+++.++.+..+. ....-..+-|-+.+.+-.....
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999865111 1234568889888877655432
Q ss_pred ---CCCccCCeEEEeeecCC-----CC----CC----------C-CCccccccceEEEeCCCCC-CHHHHHHHH---hcc
Q psy17262 78 ---RPHNIDGRVVETKRAVP-----RD----EI----------G-KPEANATVKKMFVGGLKDQ-EEDDLREYF---SQF 130 (172)
Q Consensus 78 ---~~~~~~~~~i~v~~~~~-----~~----~~----------~-~~~~~~~~~~l~v~~l~~~-~~~~l~~~f---~~~ 130 (172)
-...+....+.+.+-.- .. +. . .-...+..|.|.|.--..+ .++-+.+.+ ..-
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccC
Confidence 12233333344332221 00 00 0 1123456778888766554 333333332 222
Q ss_pred c----ceeEEEEeec--CCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 131 G----TIESVNMVTN--KETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 131 g----~v~~~~~~~~--~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
+ -++++.++-. +....+..||++.|-+...|...++.+.
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 2 3555555432 3446678899999999999988887653
No 192
>KOG4676|consensus
Probab=95.73 E-value=0.011 Score=44.99 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=50.5
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..|.|.|+.+ .+.++++.+|...|.|..+.+...... ......|||.|.|..++.-|...-|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtnt 74 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNT 74 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccc
Confidence 3789999988 999999999999999999998763222 33455799999999998888655443
No 193
>KOG2591|consensus
Probab=95.57 E-value=0.038 Score=44.01 Aligned_cols=70 Identities=13% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhh--cCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCCeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~i~ 88 (172)
...+.|+++.||..+..++++.+|.. +-.+.+|.+-.+. +| ||+|++..+|+.|... -...+.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nW-yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NW-YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ce-EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 44566778999999999999999975 5577888776653 33 9999999999999876 23456666655
Q ss_pred ee
Q psy17262 89 TK 90 (172)
Q Consensus 89 v~ 90 (172)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 44
No 194
>KOG0115|consensus
Probab=95.50 E-value=0.019 Score=41.28 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=50.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
..|+|.||++-++-+.+.+.|+.||++....+.-+. .+...+-+.|.|...-.|..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHH
Confidence 679999999999999999999999998776666554 566777889999988887777765
No 195
>KOG1996|consensus
Probab=95.41 E-value=0.094 Score=38.63 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCceeEEEEEecCCCCCcc-ceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 30 DESLQAFFEQWGEIVDVVVMKDPITKRSR-GFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 30 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
++++++-.++||.|.++.|+..+...... -..||+|...++|.+|+-. ++..+.|+.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 34678888999999999888776433332 3579999999999999877 8899999988776543
No 196
>KOG0804|consensus
Probab=95.37 E-value=0.12 Score=40.20 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
+.+++.|+|-.+|..++..||..|...+- .|..++++++. ...+--..|.|.+.++|..+.+. +|..+..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34489999999999999999999998774 58999999943 22344568999999999999988 7776653
No 197
>KOG2135|consensus
Probab=95.19 E-value=0.013 Score=45.70 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred cceEEEcCCCCCC-CHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 16 LRKVFIGGLDYRT-TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 16 ~~~v~v~nlp~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
.+.+-+.-.|+.. +-.+|...|..||.|..|.+-+.. -.|.|+|.+..+|-.|....+..|+++.|++.|..+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3444555555554 677999999999999999987653 479999999999988888889999999999999887
Q ss_pred CC
Q psy17262 95 RD 96 (172)
Q Consensus 95 ~~ 96 (172)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 198
>KOG4285|consensus
Probab=94.86 E-value=0.16 Score=37.63 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=55.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCe-EEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR-VVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~-~i~v~~~~~~ 95 (172)
.=|-|-+.|+... .-|.+.|++||.|.+.... ..-.|-+|.|.+.-+|.+||.+++..|+|. .|-|.+...+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 3466778877655 5677889999998776543 234689999999999999999999988875 4566665544
Q ss_pred C
Q psy17262 96 D 96 (172)
Q Consensus 96 ~ 96 (172)
.
T Consensus 271 s 271 (350)
T KOG4285|consen 271 S 271 (350)
T ss_pred H
Confidence 3
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.73 E-value=0.28 Score=27.95 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 27 RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 27 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.++-++++..+..|+- .+| ..++ .|+ ||.|.+..+|++|... ++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5688999999999964 233 3333 244 8999999999999998 777777766554
No 200
>KOG2193|consensus
Probab=94.73 E-value=0.038 Score=42.63 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=43.9
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.+|++||.. ++..+|..+|..--...+-.++ ...||+||.+.+...|.+|++.++|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk 60 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGK 60 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchh
Confidence 4689999988 9999999999753111111121 23568999999999999999998874
No 201
>KOG0804|consensus
Probab=93.70 E-value=0.39 Score=37.56 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=52.8
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcc-cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...|.|-..|. ++..+|..++..+ ..|..++++++. ...+=.++|+|.+.++|..-...+||.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCC
Confidence 67899999999 9999999998865 578889999964 233335899999999999999999985
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.86 E-value=0.51 Score=32.78 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C--CCccCCeEEEeeecCCC
Q psy17262 28 TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVVETKRAVPR 95 (172)
Q Consensus 28 ~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~~~~~~i~v~~~~~~ 95 (172)
-..+.|+++|..++.+.....++. -+...|.|.+.+.|.+|... + +..+.|..+++.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 345789999999999877766653 35789999999999999998 6 67889999999887544
No 203
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.72 E-value=0.38 Score=31.96 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 121 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.+|.+.|..||.+.-+++..+ --+|.|.+-++|-+|+..-+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCS
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCc
Confidence 367788889999999888753 279999999999999987553
No 204
>KOG4285|consensus
Probab=92.05 E-value=0.65 Score=34.54 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=42.7
Q ss_pred EEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 110 MFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 110 l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
+-|-+.|.-.-..|...|++||.|...... ..-.+-+|+|.+.-.|++||.+..
T Consensus 200 VTVfGFppg~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 200 VTVFGFPPGQVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred EEEeccCccchhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcC
Confidence 566677776778899999999999886442 223378999999999999998754
No 205
>KOG2591|consensus
Probab=91.34 E-value=1.9 Score=34.92 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=44.4
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhc--ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.+.+.++.+|. +-.++++.+|+. +..+.++.+-.+. -=||.|.+..+|+.|...|.
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 34678899999 888999999984 7788888775432 24899999999999987653
No 206
>KOG2068|consensus
Probab=90.87 E-value=0.25 Score=37.05 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=45.9
Q ss_pred ceEEEeCCCC--CCHHHHH--HHHhcccceeEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD--QEEDDLR--EYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~--~~~~~l~--~~f~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+-+|+-+|+. ..+..|+ +.|..||.|..+.+-.+.. .......++|.|...++|.+|+...+|.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 4578888887 4444444 4578889999988776541 1122334899999999999999988764
No 207
>KOG4574|consensus
Probab=90.70 E-value=0.13 Score=43.19 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=45.9
Q ss_pred EEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 110 l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.++.|.+- .+..-|..+|+.||.|.+...+++.. .|.|+|...+.|..|+++++|.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCC
Confidence 34444444 56678999999999999998887743 5999999999999999999984
No 208
>KOG4483|consensus
Probab=89.49 E-value=2 Score=33.36 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=52.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
.-..+.+-.+.|-|-++|.....+||-..|+.||. --+|+.+.+. +||..|.+...|..||..
T Consensus 383 ~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 383 PLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 33445567788899999999999999999999965 5677777664 899999999999999876
No 209
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=87.36 E-value=4.7 Score=31.52 Aligned_cols=43 Identities=14% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCCCCCcceEEEcCCCCC-CCHHHHHHHHhhc----CceeEEEEEec
Q psy17262 9 KCTEPESLRKVFIGGLDYR-TTDESLQAFFEQW----GEIVDVVVMKD 51 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~ 51 (172)
.+.+..++.+|-|-|+.++ +...+|.-.|+.| |.+..+.|...
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3445678889999999876 5777888877766 57777877664
No 210
>KOG4410|consensus
Probab=84.38 E-value=5.1 Score=29.77 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=36.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCce-eEEEEEecCCCCCccceEEEEECCH
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEA 68 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afv~f~~~ 68 (172)
...-|+++|||.++.-.||+..+.+.|-+ .++.. .-+.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 34559999999999999999999998752 22221 11567899999864
No 211
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=82.72 E-value=4.4 Score=22.72 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.6
Q ss_pred HHHHHHHhhcCceeEEEEE
Q psy17262 31 ESLQAFFEQWGEIVDVVVM 49 (172)
Q Consensus 31 ~~l~~~f~~~G~v~~~~~~ 49 (172)
.+|+++|+.+|+|.-..+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999998766554
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.39 E-value=0.9 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHh
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFE 38 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~ 38 (172)
..+.++|.|.|||...++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 45789999999999999999987653
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.33 E-value=9.8 Score=21.97 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHhhcC-----ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 25 DYRTTDESLQAFFEQWG-----EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 25 p~~~t~~~l~~~f~~~G-----~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
-..++..+|..++...+ .|-.|.+.. .|+||+-... .|..+++. ++..+.|+.+.|..+
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34578889999998774 355666654 3889888664 56667777 888999999988753
No 214
>KOG2253|consensus
Probab=77.30 E-value=2.4 Score=34.92 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=48.2
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..+..++||+|+.. +..+-++.++..+|-|.++.... +||.+|..+..+.+|+..++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc
Confidence 44567899999999 99999999999999988876432 79999999999999988765
No 215
>KOG4008|consensus
Probab=76.14 E-value=3 Score=30.05 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEE
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV 46 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~ 46 (172)
......+.+|+.|+|..++++-|..+.+..|.+...
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455678899999999999999999999999865433
No 216
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.06 E-value=9.3 Score=21.86 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=42.9
Q ss_pred HHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 31 ESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 31 ~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
++|.+.|...| ++..+.-+..+.++.....-||+.....+...++ +-..+.+..|+|.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecCCC
Confidence 57888899988 5777777776656666677788887655433332 33567788888886654
No 217
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=75.77 E-value=6.2 Score=25.14 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCCCCCCCCCcc
Q psy17262 24 LDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEA 103 (172)
Q Consensus 24 lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 103 (172)
|||.++ .|.++|+.-|+|.++..+..-.++ +|..-+...-..++|. |.+..........- .
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypdn--------------dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i--~ 71 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPDN--------------DALLYVHGTLEQVDGN-IRIGSGQTPASVRI--Q 71 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCCc--------------hhhheeeeehhhccCc-EEEccCCCcccEEE--e
Confidence 777764 688999999999988766432111 1111111111123333 44443221111000 0
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhc---ccceeEEEEeecCCCCCccceEEEEeCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQ---FGTIESVNMVTNKETGAKRGFAFIEFND 157 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~---~g~v~~~~~~~~~~~~~~~g~afv~f~~ 157 (172)
..++. --|.--|. ++..+++++|+. |.+|.+-.+.++.-...+-..||.-|..
T Consensus 72 gTPsg-nnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~ 128 (145)
T TIGR02542 72 GTPSG-NNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNA 128 (145)
T ss_pred cCCCC-CceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEecc
Confidence 00000 01122344 899999999974 7777776676663223333468877753
No 218
>KOG4213|consensus
Probab=74.75 E-value=5 Score=27.71 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=40.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC--CccceEEEEECCHHHHHHHHhcCCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSNRPH 80 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~~~~ 80 (172)
.|++|.. |.+...++|.++-+ |.+..+.+-... .+ ..+|--||+|.+.+.|.++++....
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~e~ 172 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTHEE 172 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhhhh
Confidence 3555555 34444455555555 678877776543 34 4788999999999999998877433
No 219
>KOG2253|consensus
Probab=74.54 E-value=3 Score=34.45 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
.+..+|||+|+...+..+-++.....+|-|.+.+... +||-.|.....+.+++.. ....++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 5678999999999999999999999999987665443 899999999998888877 56667776655543
No 220
>KOG4483|consensus
Probab=74.18 E-value=16 Score=28.63 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=43.0
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHH
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~ 167 (172)
.-.+.|-|.+.|. .-.++|...|+.|+ .-..|+++.+. .||.-|.....|..||-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3557889999998 77777777777775 55567777653 589999999999998864
No 221
>KOG2318|consensus
Probab=69.11 E-value=22 Score=29.25 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=50.4
Q ss_pred ccccceEEEeCCCC--CCHHHHHHHHhcc----cceeEEEEeecC----------CCCC---------------------
Q psy17262 104 NATVKKMFVGGLKD--QEEDDLREYFSQF----GTIESVNMVTNK----------ETGA--------------------- 146 (172)
Q Consensus 104 ~~~~~~l~v~~l~~--~~~~~l~~~f~~~----g~v~~~~~~~~~----------~~~~--------------------- 146 (172)
...+++|-|-|+.| +...+|..+|..| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999999 9999999988765 588888775421 0011
Q ss_pred ----------------ccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 147 ----------------KRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 147 ----------------~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.-=||.|+|.+.++|.+.....+|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG 290 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDG 290 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCc
Confidence 122689999999999999888776
No 222
>KOG4574|consensus
Probab=69.04 E-value=7.9 Score=33.20 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=54.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCc--cCCeEEEeeecCCC
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN--IDGRVVETKRAVPR 95 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~--~~~~~i~v~~~~~~ 95 (172)
..+.|.+-..+...|..++..||.+.+.+..++. ..|.|+|.+.+.|-.|+.. ++.. ..|-+.+|-.+...
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3455556677778889999999999999987754 5899999999999999987 5544 45666666655544
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=68.07 E-value=12 Score=23.95 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=25.4
Q ss_pred EEEcCCCCC---------CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECC
Q psy17262 19 VFIGGLDYR---------TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE 67 (172)
Q Consensus 19 v~v~nlp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~ 67 (172)
+.|.|+|.. ++-+.|.+.|+.|.++ +++.+.+. ..+.|++.|+|..
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNK 65 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--S
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECC
Confidence 456666543 3557899999999886 46566654 2478899999976
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=67.08 E-value=23 Score=20.81 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHh
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQ-WG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 76 (172)
.-|+-.++++++..+|+..++. || .|.++....-+ ....-|||++...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHH
Confidence 3455567889999999999997 56 47777766543 233469999988777765543
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=66.16 E-value=26 Score=21.01 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQ-WG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
-|.--++++++..+|++.++. || .|.++.....+ ....-|||++...+.|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 444456789999999999997 57 47777776643 2334699999988888776544
No 226
>KOG2318|consensus
Probab=65.44 E-value=34 Score=28.27 Aligned_cols=74 Identities=9% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhhc----CceeEEEEEecCC----------CCC---------------------
Q psy17262 13 PESLRKVFIGGLDYR-TTDESLQAFFEQW----GEIVDVVVMKDPI----------TKR--------------------- 56 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~~~----------~~~--------------------- 56 (172)
...+++|-|.|+.++ +...||.-+|..| |.|+++.|....- +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999877 6888999888877 6899988865321 121
Q ss_pred --------------ccc--eEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 57 --------------SRG--FGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 57 --------------~~g--~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
..+ ||-|+|.+.+.|....+. .|..+....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 012 577999999999999988 777776543
No 227
>KOG2891|consensus
Probab=63.95 E-value=9.7 Score=28.25 Aligned_cols=37 Identities=24% Similarity=0.503 Sum_probs=29.7
Q ss_pred CCCcceEEEcCCCCC------------CCHHHHHHHHhhcCceeEEEEE
Q psy17262 13 PESLRKVFIGGLDYR------------TTDESLQAFFEQWGEIVDVVVM 49 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~------------~t~~~l~~~f~~~G~v~~~~~~ 49 (172)
.....+|++.+||.. .+++.|+..|+.||.|..+.++
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 355678999999843 4677899999999999888775
No 228
>KOG3424|consensus
Probab=63.56 E-value=37 Score=21.81 Aligned_cols=48 Identities=10% Similarity=0.150 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHhhc-C----ceeEEEEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQW-G----EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~-G----~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
++++.++|++-+... - .|.-..+...-.++.+.|+|.| |.+.+.|...
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 467888999988764 2 2333344444456778888877 8888877643
No 229
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.11 E-value=21 Score=20.56 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 31 ESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 31 ~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
++|.+.|...| ++..++-+.++.++.....-+|+.....+....+ +-..+.|+.+.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecCcc
Confidence 46888899998 5888887777766656666778776644332221 23456788888876543
No 230
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=59.58 E-value=4.3 Score=31.55 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=49.4
Q ss_pred ccccceEEEeCCCC-CC--------HHHHHHHHhc--ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 104 NATVKKMFVGGLKD-QE--------EDDLREYFSQ--FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~--------~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
....+.+|+.+.+. .. .+++...|.+ .+.+..++.-++......+|..|++|+..+.+++++.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34456788888776 22 3588899998 6788888877776667788899999999999999874
No 231
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.83 E-value=17 Score=27.49 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=22.5
Q ss_pred EEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 61 GFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 61 afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
|||+|++..+|..|.+. .... ++...+..+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 79999999999999986 2222 233455555444
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=55.62 E-value=32 Score=25.83 Aligned_cols=60 Identities=12% Similarity=0.300 Sum_probs=44.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecC-------CCCCccceEEEEeCCHHHHH
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK-------ETGAKRGFAFIEFNDYDVVD 162 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~ 162 (172)
+.-..|.|...|+.. ++--.+...|-+||+|+++.+..+. +.........+-|-+.+.+-
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 344567788888887 8878888889999999999988664 11233456788888877654
No 233
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=55.61 E-value=5.6 Score=30.99 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCcceEEEcCCCCCCCHH--------HHHHHHhh--cCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 14 ESLRKVFIGGLDYRTTDE--------SLQAFFEQ--WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~--------~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
..-|.+|+.+.....+.+ ++..+|.. .++...+...++-....++|--|++|+..+.++++...
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 445667777777665555 89999998 56777777777666677889899999999999999853
No 234
>KOG1295|consensus
Probab=54.86 E-value=19 Score=27.95 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=43.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCC--CCccceEEEEECCHHHHHHHHhc
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
..-..|.|..||+..+++++.+-+.++-+ +....+...... ..-.+.|||.|..+++.......
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~ 71 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRR 71 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhh
Confidence 34567889999999999999999888754 333333321111 11246789999999996655544
No 235
>PF14893 PNMA: PNMA
Probab=54.27 E-value=11 Score=28.88 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh----hcCceeEEEEEecCCCCCccceEEEEECC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFE----QWGEIVDVVVMKDPITKRSRGFGFITYSE 67 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~----~~G~v~~~~~~~~~~~~~~~g~afv~f~~ 67 (172)
+.-|.|.|.+||.+|++++|.+.+. ++|...-.--+..+.. ....|+|+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccc
Confidence 3457899999999999999988765 4455332211111111 23467888765
No 236
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=51.29 E-value=13 Score=18.32 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhhcCc
Q psy17262 26 YRTTDESLQAFFEQWGE 42 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~G~ 42 (172)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47889999999988653
No 237
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=48.44 E-value=65 Score=20.00 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHhh-cCceeEEEEEecCCC----CCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGEIVDVVVMKDPIT----KRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~----~~~~g~afv~f~~~~~a~~a 74 (172)
...+..+|+..+.. |+.-.+..++....| +.+.|+|.| |.+.+.|...
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888887764 554323333332223 456677776 8888877654
No 238
>KOG2891|consensus
Probab=47.26 E-value=19 Score=26.74 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=28.3
Q ss_pred cccceEEEeCCCC-C------------CHHHHHHHHhcccceeEEEEee
Q psy17262 105 ATVKKMFVGGLKD-Q------------EEDDLREYFSQFGTIESVNMVT 140 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~------------~~~~l~~~f~~~g~v~~~~~~~ 140 (172)
..+.++|+.++|- | +++-|+..|..||.|..+.++.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3456788888874 2 5678999999999999988764
No 239
>KOG4410|consensus
Probab=44.86 E-value=1e+02 Score=23.18 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=34.5
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHH
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYD 159 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~ 159 (172)
....++++||+. .--.+|+..+.+-|. ..+.+... ..+|-||+.|-|..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCcc
Confidence 345699999999 888999999987743 33344332 33556999996543
No 240
>KOG2135|consensus
Probab=43.02 E-value=11 Score=30.17 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 118 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
-+-++|..-|-.||.|..|.+- .+.-.|.|+|.+..+|-.|.
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~------~~~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVD------YSSLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred chHhhhhhhhhhcCcccccccc------Cchhhheeeeeccccccchh
Confidence 4668899999999999999873 22336999999988885543
No 241
>COG5584 Predicted small secreted protein [Function unknown]
Probab=40.19 E-value=78 Score=19.54 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHhhcCceeEEEEEecCCC
Q psy17262 23 GLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT 54 (172)
Q Consensus 23 nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~ 54 (172)
|++++....-+++.|.++|+|.--++...+.+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 56666777788999999999988888776643
No 242
>KOG0862|consensus
Probab=39.04 E-value=33 Score=24.54 Aligned_cols=30 Identities=37% Similarity=0.708 Sum_probs=19.3
Q ss_pred HHHHHHHhc-ccceeEEEEeecCCCCCccceEEEEeCCH
Q psy17262 121 DDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDY 158 (172)
Q Consensus 121 ~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~afv~f~~~ 158 (172)
++|.+.|.. ||.-.. +...|.|+||+|++-
T Consensus 89 edL~~EF~~~~~~~~~--------~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNII--------QPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccC--------CccCCCeeEEehhHH
Confidence 677777774 543211 235567999999764
No 243
>PHA01632 hypothetical protein
Probab=37.68 E-value=45 Score=18.19 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQ 39 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~ 39 (172)
+.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345788999999999987754
No 244
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=37.63 E-value=91 Score=18.61 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHhh-cCc----eeEEEEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+.. |+. |.-..+...-..+.+.|+|.| |.+.+.+...
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45677788887765 342 222333333334556777776 8888777644
No 245
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.93 E-value=55 Score=19.41 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=20.7
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 146 AKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 146 ~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+||.|||=.+..+...|++.+.+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 4688999999999999999986643
No 246
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=35.48 E-value=51 Score=20.39 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHh
Q psy17262 146 AKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 146 ~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.-.-+++++|.+.+....|..++
T Consensus 64 E~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 64 EEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred cEEEEEEEEcCchhHHHHHHHHh
Confidence 34557899999999888887764
No 247
>KOG2295|consensus
Probab=35.22 E-value=4.4 Score=32.89 Aligned_cols=63 Identities=6% Similarity=0.008 Sum_probs=46.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEEC---CHHHHHHHHhc
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS---EAKMVDDAMSN 77 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~---~~~~a~~a~~~ 77 (172)
..+.++++|++|+.+-.+|......+--++.+.+......+.....++|+|+ +...|.-||..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 3467899999999999999999998866666655443334445667888886 45666666653
No 248
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.23 E-value=28 Score=19.88 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=17.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHh
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFE 38 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~ 38 (172)
..+++++||+||..+-.+.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 5689999999998776654444443
No 249
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.09 E-value=45 Score=16.36 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHhhcCce
Q psy17262 27 RTTDESLQAFFEQWGEI 43 (172)
Q Consensus 27 ~~t~~~l~~~f~~~G~v 43 (172)
..+.++|+.++..+|..
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998864
No 250
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.88 E-value=35 Score=18.04 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCCcceEEE
Q psy17262 1 MKPRYDDSKCTEPESLRKVFI 21 (172)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~v~v 21 (172)
|+|+-.+.......+.|.|.+
T Consensus 1 MKPRTGdGPlEv~kEgR~ivm 21 (51)
T PF11314_consen 1 MKPRTGDGPLEVTKEGRGIVM 21 (51)
T ss_pred CCCccCCCCcEEeecCceEEE
Confidence 666666666665555555543
No 251
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=33.82 E-value=61 Score=19.80 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=31.7
Q ss_pred eEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 109 KMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 109 ~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.+.-+-.|..+...+..-|..-|. +...-... ...=+.+|.|.|.+.+.+..|.+.|
T Consensus 15 QVlYS~~p~l~~~~i~~Q~~~~gk-k~~pp~lR--kD~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 15 QVLYSQTPNLDNNQILKQFPFPGK-KNKPPSLR--KDYWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred CEEEecCcccChhHHHHhccCCCc-ccCCchhc--cccceEeEEEECCChHHHHHHHHHH
Confidence 344444555666655555443321 11110001 1233558999999999999998765
No 252
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=33.39 E-value=1.4e+02 Score=19.61 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHhh-cC-ceeEEEEEe----cCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WG-EIVDVVVMK----DPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G-~v~~~~~~~----~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
...+..+|++-+.. |+ .-.+..++. .-..+.+.|||.| |.+.+.+...
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677899887764 45 222222222 2223456777776 7787776643
No 253
>PF15063 TC1: Thyroid cancer protein 1
Probab=33.03 E-value=33 Score=20.08 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=24.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCce
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEI 43 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v 43 (172)
..|.--+.||-.+++...|..+|..-|..
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34555688999999999999999999863
No 254
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.33 E-value=75 Score=19.23 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecCC----CCC------ccceEEEEECCHH
Q psy17262 19 VFIGGLDYRTTDESLQAFFEQ-WG-EIVDVVVMKDPI----TKR------SRGFGFITYSEAK 69 (172)
Q Consensus 19 v~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~----~~~------~~g~afv~f~~~~ 69 (172)
.+.-.++++++..+|+++++. || .|.++....-+. .+. ...-|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 455567889999999999986 57 477776654331 111 1125788877653
No 255
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.23 E-value=88 Score=16.53 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGE 42 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~ 42 (172)
..+++.+..+..+.++|.+.+..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 45778887778899999999999986
No 256
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=30.89 E-value=50 Score=17.16 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.7
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|++.++.++|+..|...
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45788999999999988765
No 257
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=29.68 E-value=1.4e+02 Score=18.40 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHHhhcCc-e--eEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 33 LQAFFEQWGE-I--VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 33 l~~~f~~~G~-v--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
+...|++||- . ..-.+..-...........|+|.+.+.|..|..+
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcC
Confidence 4456777764 1 1112222222344466889999999999988753
No 258
>KOG2295|consensus
Probab=29.18 E-value=8 Score=31.50 Aligned_cols=60 Identities=5% Similarity=0.006 Sum_probs=41.5
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeC---CHHHHHHHHHH
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFN---DYDVVDKIVCK 167 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~---~~~~a~~A~~~ 167 (172)
..++++|+++ .+.++|..+|+.+..+..+-+..+..........+|.|+ |...|.-||+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 4689999988 999999999999887777655443322333446889996 44455555443
No 259
>smart00457 MACPF membrane-attack complex / perforin.
Probab=27.70 E-value=58 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=19.6
Q ss_pred EcCCCCCCCHHHHHHHHhhcCc
Q psy17262 21 IGGLDYRTTDESLQAFFEQWGE 42 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~G~ 42 (172)
+..||...+..+...+|+.||.
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4578989999999999999997
No 260
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=27.20 E-value=62 Score=17.59 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.7
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-||+++++.++|+..|...
T Consensus 5 iLgl~~~~~~~eik~~y~~l 24 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRL 24 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHhh
Confidence 34789999999999988764
No 261
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=27.14 E-value=63 Score=17.18 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=16.8
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|++.++.++|+..|...
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45789999999999988765
No 262
>CHL00030 rpl23 ribosomal protein L23
Probab=26.22 E-value=1.6e+02 Score=17.99 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=26.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhh-cC-ceeEEEEEecC
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQ-WG-EIVDVVVMKDP 52 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~ 52 (172)
.-|+--++++++..+|++.++. || .|.++....-+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 3455567889999999999997 66 47777665543
No 263
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=26.10 E-value=48 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=17.0
Q ss_pred EcCCCCCCCHHH---HHHHHhhcCcee
Q psy17262 21 IGGLDYRTTDES---LQAFFEQWGEIV 44 (172)
Q Consensus 21 v~nlp~~~t~~~---l~~~f~~~G~v~ 44 (172)
|..||...+..+ ..++|..||...
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~ 79 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHY 79 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEE
Confidence 567888888888 788999999843
No 264
>KOG0156|consensus
Probab=25.26 E-value=1.8e+02 Score=23.82 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=44.4
Q ss_pred ceEEEcCCCCCCC---HHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEE
Q psy17262 17 RKVFIGGLDYRTT---DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (172)
Q Consensus 17 ~~v~v~nlp~~~t---~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i 87 (172)
.-=+||||+.-.. ...+..+-++||++-.+++=. .-.|.-.+.+.|+.++..++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 3335677764333 345566666899998776633 2378889999999999998888888875
No 265
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.25 E-value=1.6e+02 Score=17.69 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHhcc-cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 121 DDLREYFSQF-GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 121 ~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
+.++++++.. |.+....+...+ .-....+++.|.++|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHH
Confidence 3456666654 578877777643 3346889999999998876544
No 266
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=1.4e+02 Score=22.17 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=32.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNR 78 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~ 78 (172)
....|+|||++++..-+..++..--.+..+ +.+-..|-|++....-
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~----------------v~M~QkEva~Rl~A~p 141 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM----------------VLMVQKEVAERLVAKP 141 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE----------------EEEeHHHHHHHHhCCC
Confidence 456799999999999999888764443333 3334566777777663
No 267
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=23.95 E-value=1.3e+02 Score=16.07 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=37.3
Q ss_pred EEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCH----HHHHHHHHHh
Q psy17262 110 MFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDY----DVVDKIVCKY 168 (172)
Q Consensus 110 l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~----~~a~~A~~~~ 168 (172)
+.|.|+.- -....+.+.+....+|..+.+-.. .+.+-|.|... +....+++++
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 45666655 566788999999999999887433 23588888643 6666666654
No 268
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=2e+02 Score=18.10 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 121 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
.++..+++..|.-.+..++... ++ .=||++++.|.+...+++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~-~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEE-EN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCC-cc--cEEEEEEEcChHHHHHHHh
Confidence 4567777888555544444433 23 3389999997777766654
No 269
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.44 E-value=51 Score=25.40 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 114 GLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 114 ~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+.|....+-+.+.+.|.|..-.+.+- .+-|.+||-....+++.++++.+.+
T Consensus 269 d~~~~~~p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 269 DKPSWPPPPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred cCCCCCCcHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHh
Confidence 3344555677777888888887766543 4556789999999999999988764
No 270
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.13 E-value=33 Score=21.11 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEEe
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMK 50 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~ 50 (172)
..+.|.+.+||+.++++.|+= +-.| .|..+.+..
T Consensus 22 G~~~i~~~~Lp~~~d~~Sl~V--~~~g~~~i~~v~~~~ 57 (104)
T PF13600_consen 22 GENEIIFEGLPPSLDPDSLRV--SGEGGVTILSVRFRR 57 (104)
T ss_pred CceEEEEeCCCcccCCCcEEE--EecCCEEEEEEEEEE
Confidence 457899999999999988843 3334 455555443
No 271
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=22.38 E-value=1.8e+02 Score=20.61 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=39.8
Q ss_pred EEECCHHHHHHHHhcCCCccCCeEEEeeecCCCCCCCCCccccccceEEE---------eCCCCCCHHHHHHHHhcc
Q psy17262 63 ITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFV---------GGLKDQEEDDLREYFSQF 130 (172)
Q Consensus 63 v~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v---------~~l~~~~~~~l~~~f~~~ 130 (172)
+.|.+.++|-+.++..+....-..|.+..+.+. .+...+++|| .|...-..+.+..-.+++
T Consensus 47 ~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~-------VNE~TkkIYICPFTGKVF~DNt~~nPQDAIYDWvSkC 116 (238)
T PF10915_consen 47 IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPS-------VNEQTKKIYICPFTGKVFGDNTHPNPQDAIYDWVSKC 116 (238)
T ss_pred hhccCHHHHHHHHHHhcchheeeeEEEecCCcc-------cccccceEEEcCCcCccccCCCCCChHHHHHHHHhhC
Confidence 458899999999998777666667777755443 3444455555 333334556677777766
No 272
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=20.93 E-value=2.3e+02 Score=17.89 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHhh-cCceeEE-EEEecC---CCCCccceEEEEECCHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGEIVDV-VVMKDP---ITKRSRGFGFITYSEAKMVDD 73 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~v~~~-~~~~~~---~~~~~~g~afv~f~~~~~a~~ 73 (172)
+..+..+|++.+.. +|.-.+. .+...+ ..+.++|||-| |.|.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 56678899998865 5643333 333222 22446677766 778777653
No 273
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=20.83 E-value=2.5e+02 Score=18.90 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=31.6
Q ss_pred EEEeCCCC--CCHHHHHHHHhc-ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 110 MFVGGLKD--QEEDDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 110 l~v~~l~~--~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.|.++|.. .+-+.|+.-+.. |+...+ .+... .-...+.+.|+|.-+-+|..-+..|
T Consensus 7 a~~G~l~~~~~~ld~i~~~l~~L~~~~~~-~l~~~--~~~~~~sv~V~f~ipreaa~~Lr~L 65 (149)
T PF13820_consen 7 AYIGGLRMFQYKLDDIKNWLASLYKPRIS-DLKVR--KVEPWNSVRVTFSIPREAATRLRQL 65 (149)
T ss_pred EEECChhhhHHHHHHHHHHHHHHHhcccc-cceee--ccccCceEEEEEechHHHHHHHHHH
Confidence 46666664 444555555443 333222 22222 1344557999999988887777654
No 274
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=1.8e+02 Score=23.21 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=28.8
Q ss_pred ccccccceEEEeCCCC--CCHHHHHHHHhcc----cceeEEEEe
Q psy17262 102 EANATVKKMFVGGLKD--QEEDDLREYFSQF----GTIESVNMV 139 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~--~~~~~l~~~f~~~----g~v~~~~~~ 139 (172)
....+.++|-|-|+.| +...+|...|+.| |.+..+.|.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 3355678999999999 8889999888764 566666554
Done!