Query psy17262
Match_columns 172
No_of_seqs 123 out of 1838
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 17:29:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.7E-38 1.3E-42 219.5 19.9 161 7-167 4-165 (196)
2 1fxl_A Paraneoplastic encephal 100.0 2.9E-36 9.9E-41 204.7 21.1 151 15-171 1-153 (167)
3 4f02_A Polyadenylate-binding p 100.0 7.6E-37 2.6E-41 215.8 18.5 154 12-171 11-166 (213)
4 1b7f_A Protein (SXL-lethal pro 100.0 3.3E-36 1.1E-40 204.8 20.0 151 15-171 2-154 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 6.1E-36 2.1E-40 202.9 19.5 150 17-171 1-152 (166)
6 3nmr_A Cugbp ELAV-like family 100.0 7.8E-35 2.7E-39 199.1 19.9 151 15-171 2-159 (175)
7 2cjk_A Nuclear polyadenylated 100.0 6E-36 2E-40 203.4 13.1 148 15-170 2-150 (167)
8 2qfj_A FBP-interacting repress 100.0 2.9E-35 9.8E-40 207.7 17.0 158 14-171 26-190 (216)
9 2g4b_A Splicing factor U2AF 65 100.0 6E-33 2.1E-37 189.4 19.4 146 14-171 2-159 (172)
10 3tyt_A Heterogeneous nuclear r 100.0 3.2E-33 1.1E-37 195.9 18.0 151 14-171 2-188 (205)
11 3sde_A Paraspeckle component 1 100.0 2E-32 6.7E-37 198.7 18.7 144 7-169 13-158 (261)
12 3smz_A Protein raver-1, ribonu 100.0 4.1E-32 1.4E-36 199.1 20.4 154 14-171 93-249 (284)
13 2yh0_A Splicing factor U2AF 65 100.0 3.7E-32 1.3E-36 189.3 19.2 152 14-171 2-179 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 2E-33 6.9E-38 192.4 11.5 151 11-171 8-159 (175)
15 3pgw_A U1-A; protein-RNA compl 100.0 2.3E-31 7.8E-36 194.9 20.0 152 12-171 5-267 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 3.3E-31 1.1E-35 188.8 19.2 151 11-171 29-212 (229)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-31 3.9E-36 197.4 16.4 155 15-171 116-276 (292)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-31 7E-36 196.1 17.6 147 9-171 34-182 (292)
19 3smz_A Protein raver-1, ribonu 100.0 5.5E-31 1.9E-35 193.1 19.4 139 14-171 20-160 (284)
20 1qm9_A Polypyrimidine tract-bi 100.0 4.2E-31 1.4E-35 184.2 15.8 147 15-171 2-181 (198)
21 4f25_A Polyadenylate-binding p 99.9 1.2E-24 4E-29 139.2 10.4 106 14-121 3-112 (115)
22 2kn4_A Immunoglobulin G-bindin 99.9 9.3E-23 3.2E-27 137.3 12.1 125 45-171 2-135 (158)
23 4fxv_A ELAV-like protein 1; RN 99.9 9.7E-23 3.3E-27 126.8 11.2 81 14-94 17-98 (99)
24 2lxi_A RNA-binding protein 10; 99.9 4.9E-23 1.7E-27 126.2 7.0 82 16-97 1-85 (91)
25 3s8s_A Histone-lysine N-methyl 99.9 1.4E-21 4.6E-26 123.8 11.5 83 13-95 3-86 (110)
26 3s7r_A Heterogeneous nuclear r 99.9 1.9E-21 6.4E-26 118.2 10.8 83 10-92 5-87 (87)
27 2dgo_A Cytotoxic granule-assoc 99.9 9.3E-21 3.2E-25 120.9 14.0 94 6-99 5-99 (115)
28 2dgs_A DAZ-associated protein 99.9 6E-21 2.1E-25 118.7 12.5 89 10-98 4-92 (99)
29 1x5u_A Splicing factor 3B subu 99.9 6.1E-21 2.1E-25 119.9 12.5 93 6-98 5-98 (105)
30 2jrs_A RNA-binding protein 39; 99.9 4.5E-21 1.5E-25 121.1 11.6 92 5-96 15-107 (108)
31 1x4h_A RNA-binding protein 28; 99.9 7.2E-21 2.5E-25 120.7 12.6 93 7-99 6-105 (111)
32 1p27_B RNA-binding protein 8A; 99.9 3.6E-21 1.2E-25 121.1 11.1 90 7-96 14-104 (106)
33 2do4_A Squamous cell carcinoma 99.9 9.6E-21 3.3E-25 118.0 12.7 89 8-97 9-98 (100)
34 2cqc_A Arginine/serine-rich sp 99.9 6.6E-21 2.3E-25 117.6 11.8 88 7-94 6-94 (95)
35 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.3E-21 1.5E-25 116.5 10.6 82 14-95 4-86 (87)
36 2cqg_A TDP-43, TAR DNA-binding 99.9 2.2E-20 7.6E-25 116.9 13.8 93 6-99 5-97 (103)
37 2cq0_A Eukaryotic translation 99.9 9.7E-21 3.3E-25 118.6 12.0 91 8-98 7-98 (103)
38 2dh8_A DAZ-associated protein 99.9 6.2E-21 2.1E-25 119.9 10.9 91 8-98 8-98 (105)
39 2rs2_A Musashi-1, RNA-binding 99.9 6.4E-21 2.2E-25 120.6 10.8 89 9-97 18-106 (109)
40 3md1_A Nuclear and cytoplasmic 99.9 9.7E-21 3.3E-25 114.0 11.0 81 16-96 1-82 (83)
41 1whw_A Hypothetical protein ri 99.9 1.3E-20 4.3E-25 117.2 11.9 87 12-98 4-91 (99)
42 3lqv_A PRE-mRNA branch site pr 99.9 2.5E-21 8.5E-26 123.6 8.7 104 12-132 4-109 (115)
43 2dnz_A Probable RNA-binding pr 99.9 1.7E-20 5.9E-25 115.7 12.1 86 13-98 2-88 (95)
44 2cpz_A CUG triplet repeat RNA- 99.9 2E-20 6.7E-25 119.5 12.6 89 10-98 19-108 (115)
45 2dng_A Eukaryotic translation 99.9 3.1E-20 1.1E-24 116.2 13.3 91 7-98 6-96 (103)
46 2lkz_A RNA-binding protein 5; 99.9 1.8E-21 6.2E-26 119.9 7.4 83 12-94 5-94 (95)
47 2dnm_A SRP46 splicing factor; 99.8 1E-20 3.5E-25 118.4 10.7 89 10-98 7-96 (103)
48 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-20 4.9E-25 117.6 11.3 90 9-98 5-95 (102)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.5E-21 2.9E-25 114.7 9.9 80 13-92 4-84 (85)
50 2x1f_A MRNA 3'-END-processing 99.8 1.1E-20 3.9E-25 116.8 10.6 83 15-97 1-84 (96)
51 2cqi_A Nucleolysin TIAR; RNA r 99.8 4E-20 1.4E-24 115.8 13.2 92 6-99 5-97 (103)
52 2dhg_A TRNA selenocysteine ass 99.8 1.9E-20 6.5E-25 117.4 11.8 90 10-100 3-95 (104)
53 2kxn_B Transformer-2 protein h 99.8 9.3E-21 3.2E-25 123.3 10.6 90 7-96 37-127 (129)
54 2d9p_A Polyadenylate-binding p 99.8 2.7E-20 9.3E-25 116.5 12.2 90 7-98 6-96 (103)
55 1x5t_A Splicing factor 3B subu 99.8 1.2E-20 4E-25 116.7 10.4 85 14-98 3-89 (96)
56 1s79_A Lupus LA protein; RRM, 99.8 8.2E-21 2.8E-25 118.8 9.8 82 12-94 7-88 (103)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-20 3.8E-25 118.1 10.3 90 9-98 5-95 (102)
58 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-20 4E-25 119.6 10.6 90 7-96 17-107 (110)
59 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-20 6.5E-25 115.3 11.1 85 8-92 8-93 (94)
60 2cph_A RNA binding motif prote 99.8 4.1E-20 1.4E-24 116.5 12.5 92 7-98 6-100 (107)
61 2la6_A RNA-binding protein FUS 99.8 2.4E-20 8.3E-25 115.9 11.3 85 8-92 5-98 (99)
62 1x4b_A Heterogeneous nuclear r 99.8 1.2E-20 4E-25 120.7 9.9 87 12-98 23-109 (116)
63 2cpf_A RNA binding motif prote 99.8 2.4E-20 8.1E-25 115.7 10.8 85 14-98 3-91 (98)
64 2cq3_A RNA-binding protein 9; 99.8 9.5E-20 3.3E-24 114.0 13.7 91 6-98 5-96 (103)
65 2cqd_A RNA-binding region cont 99.8 6.5E-20 2.2E-24 117.2 13.1 89 8-96 9-97 (116)
66 2div_A TRNA selenocysteine ass 99.8 2.6E-20 8.8E-25 115.8 10.8 86 11-96 4-95 (99)
67 2dnh_A Bruno-like 5, RNA bindi 99.8 7E-20 2.4E-24 115.0 12.9 86 12-98 11-100 (105)
68 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-20 1.1E-24 116.8 11.2 90 8-97 5-98 (106)
69 3ns6_A Eukaryotic translation 99.8 3.5E-21 1.2E-25 120.0 6.7 84 12-95 2-93 (100)
70 3p5t_L Cleavage and polyadenyl 99.8 3.9E-21 1.3E-25 117.5 6.5 81 17-97 2-85 (90)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 6E-20 2.1E-24 115.1 12.1 88 10-98 9-97 (104)
72 2hvz_A Splicing factor, argini 99.8 1E-20 3.5E-25 118.1 8.4 96 17-117 1-101 (101)
73 2ywk_A Putative RNA-binding pr 99.8 3.1E-20 1.1E-24 114.5 10.6 86 8-94 8-94 (95)
74 2fy1_A RNA-binding motif prote 99.8 5.6E-20 1.9E-24 117.5 11.9 86 12-98 3-89 (116)
75 3ucg_A Polyadenylate-binding p 99.8 3.6E-20 1.2E-24 112.9 10.5 81 15-95 5-85 (89)
76 2cpy_A RNA-binding protein 12; 99.8 1.5E-20 5E-25 119.9 8.8 89 7-96 6-95 (114)
77 1wg5_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 114.7 11.9 86 10-96 9-95 (104)
78 2cpe_A RNA-binding protein EWS 99.8 5.7E-20 1.9E-24 116.9 11.4 90 9-98 8-106 (113)
79 1sjq_A Polypyrimidine tract-bi 99.8 3.9E-20 1.3E-24 115.2 10.3 83 10-98 10-95 (105)
80 1u6f_A Tcubp1, RNA-binding pro 99.8 8.8E-20 3E-24 120.2 12.5 88 11-98 37-125 (139)
81 3ex7_B RNA-binding protein 8A; 99.8 4E-20 1.4E-24 119.9 10.6 92 7-98 13-105 (126)
82 2khc_A Testis-specific RNP-typ 99.8 3.2E-20 1.1E-24 119.0 9.8 84 9-92 33-117 (118)
83 2mss_A Protein (musashi1); RNA 99.8 1.5E-20 5E-25 111.1 7.6 75 18-92 1-75 (75)
84 1wez_A HnRNP H', FTP-3, hetero 99.8 3.3E-20 1.1E-24 115.9 9.4 86 9-96 8-93 (102)
85 3n9u_C Cleavage and polyadenyl 99.8 4.4E-20 1.5E-24 123.7 10.4 81 15-95 54-137 (156)
86 4a8x_A RNA-binding protein wit 99.8 3.8E-20 1.3E-24 112.5 9.2 83 14-96 2-86 (88)
87 1p1t_A Cleavage stimulation fa 99.8 1.3E-20 4.5E-25 118.1 7.3 85 12-96 4-89 (104)
88 2m2b_A RNA-binding protein 10; 99.8 2.1E-20 7.2E-25 122.0 8.5 91 6-97 13-110 (131)
89 2do0_A HnRNP M, heterogeneous 99.8 3.2E-19 1.1E-23 113.6 13.7 88 8-96 7-95 (114)
90 2i2y_A Fusion protein consists 99.8 7.8E-20 2.7E-24 121.9 11.0 112 54-171 9-133 (150)
91 3ulh_A THO complex subunit 4; 99.8 1.3E-19 4.3E-24 114.2 11.3 83 10-93 23-106 (107)
92 2cqp_A RNA-binding protein 12; 99.8 5.7E-20 1.9E-24 114.0 9.2 85 11-95 10-95 (98)
93 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-19 6.6E-24 110.3 11.4 84 12-97 4-88 (92)
94 1x4a_A Splicing factor, argini 99.8 2.9E-19 1E-23 112.9 12.5 88 7-97 13-101 (109)
95 2dgw_A Probable RNA-binding pr 99.8 2.1E-19 7.2E-24 109.9 11.5 85 10-96 4-88 (91)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.5E-20 8.5E-25 116.1 7.4 87 8-95 11-98 (100)
97 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-19 4.7E-24 115.4 10.7 89 5-99 20-111 (119)
98 2a3j_A U1 small nuclear ribonu 99.8 1.1E-19 3.9E-24 117.5 10.4 85 9-96 22-111 (127)
99 2cq1_A PTB-like protein L; RRM 99.8 3.2E-19 1.1E-23 110.9 12.0 85 8-98 7-94 (101)
100 1iqt_A AUF1, heterogeneous nuc 99.8 1.9E-20 6.5E-25 110.5 6.2 75 18-92 1-75 (75)
101 3r27_A HnRNP L, heterogeneous 99.8 1.5E-19 5E-24 111.6 10.1 81 10-96 15-98 (100)
102 1x4e_A RNA binding motif, sing 99.8 1.8E-20 6E-25 113.4 5.7 81 13-93 2-83 (85)
103 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-19 5.9E-24 122.1 11.2 88 10-97 66-154 (165)
104 2kn4_A Immunoglobulin G-bindin 99.8 2.7E-19 9.2E-24 120.3 12.0 88 10-97 64-152 (158)
105 2kt5_A RNA and export factor-b 99.8 4.2E-19 1.4E-23 114.7 12.5 86 11-97 30-116 (124)
106 1x4d_A Matrin 3; structural ge 99.8 1E-19 3.5E-24 113.2 9.1 86 7-98 6-95 (102)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-19 6.1E-24 118.7 10.8 84 9-92 56-140 (140)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.3E-20 1.1E-24 110.0 6.5 76 17-92 1-76 (77)
109 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.1E-19 1.1E-23 119.7 12.0 85 13-97 36-121 (156)
110 2db1_A Heterogeneous nuclear r 99.8 1.6E-19 5.4E-24 115.7 9.9 86 9-95 10-98 (118)
111 2cq4_A RNA binding motif prote 99.8 5.4E-20 1.9E-24 117.2 7.5 82 14-95 23-104 (114)
112 2dis_A Unnamed protein product 99.8 2.7E-19 9.4E-24 113.0 10.7 86 13-98 5-95 (109)
113 2dgx_A KIAA0430 protein; RRM d 99.8 3.5E-19 1.2E-23 110.1 10.9 81 13-96 6-91 (96)
114 2ek1_A RNA-binding protein 12; 99.8 6E-20 2.1E-24 113.3 7.3 82 13-94 12-94 (95)
115 2lea_A Serine/arginine-rich sp 99.8 1E-19 3.4E-24 119.3 8.6 88 10-97 41-129 (135)
116 2err_A Ataxin-2-binding protei 99.8 1.5E-19 5.1E-24 114.3 8.9 86 8-95 21-107 (109)
117 1x5o_A RNA binding motif, sing 99.8 5.2E-19 1.8E-23 112.6 11.4 84 11-95 20-112 (114)
118 2xs2_A Deleted in azoospermia- 99.8 6.7E-20 2.3E-24 114.5 7.0 85 11-97 4-88 (102)
119 2nlw_A Eukaryotic translation 99.8 1.9E-19 6.6E-24 113.0 9.1 85 10-96 9-101 (105)
120 2jwn_A Embryonic polyadenylate 99.8 5.1E-19 1.8E-23 114.3 11.1 82 15-96 35-116 (124)
121 2cpi_A CCR4-NOT transcription 99.8 2.8E-19 9.6E-24 113.4 9.6 86 11-96 10-102 (111)
122 1wex_A Hypothetical protein (r 99.8 1.9E-18 6.4E-23 108.1 12.8 84 9-98 8-94 (104)
123 2ki2_A SS-DNA binding protein 99.8 4.3E-20 1.5E-24 112.8 5.0 79 17-96 2-81 (90)
124 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.6E-23 105.7 11.7 79 12-98 4-83 (90)
125 2hgl_A HNRPF protein, heteroge 99.8 2.1E-19 7.3E-24 117.5 8.1 84 11-95 39-125 (136)
126 1fj7_A Nucleolin RBD1, protein 99.8 5.4E-20 1.9E-24 114.7 5.1 89 8-97 9-97 (101)
127 1wel_A RNA-binding protein 12; 99.8 1.5E-19 5E-24 116.9 7.1 85 11-95 20-104 (124)
128 2cpx_A Hypothetical protein FL 99.8 2.2E-19 7.7E-24 114.5 7.7 85 10-98 19-108 (115)
129 2dnn_A RNA-binding protein 12; 99.8 4.8E-19 1.7E-23 111.6 9.1 79 14-94 14-92 (109)
130 2lmi_A GRSF-1, G-rich sequence 99.8 1.6E-19 5.5E-24 113.8 6.9 85 10-95 5-92 (107)
131 2fc9_A NCL protein; structure 99.8 1.4E-18 4.7E-23 108.3 10.8 85 9-97 8-93 (101)
132 2krb_A Eukaryotic translation 99.8 3E-19 1E-23 107.0 7.3 72 16-89 1-80 (81)
133 2wbr_A GW182, gawky, LD47780P; 99.8 9.5E-19 3.3E-23 104.5 9.4 74 14-93 5-79 (89)
134 4fxv_A ELAV-like protein 1; RN 99.8 9.7E-19 3.3E-23 108.6 9.6 65 107-171 19-84 (99)
135 2fc8_A NCL protein; structure 99.8 2.3E-18 7.7E-23 107.5 11.3 89 7-98 6-95 (102)
136 2dha_A FLJ20171 protein; RRM d 99.8 3.4E-19 1.1E-23 114.6 7.6 81 14-95 21-105 (123)
137 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 120.3 11.4 89 12-100 100-188 (196)
138 2hgm_A HNRPF protein, heteroge 99.8 3.9E-19 1.3E-23 114.6 7.9 83 11-95 37-121 (126)
139 1why_A Hypothetical protein ri 99.8 3.6E-18 1.2E-22 105.7 11.5 80 11-96 12-94 (97)
140 2cpj_A Non-POU domain-containi 99.8 2.7E-18 9.1E-23 106.6 10.9 85 7-97 6-91 (99)
141 2dgt_A RNA-binding protein 30; 99.8 4.3E-18 1.5E-22 104.3 11.6 81 10-98 4-85 (92)
142 2dnp_A RNA-binding protein 14; 99.8 3.5E-18 1.2E-22 104.3 11.0 79 11-97 4-83 (90)
143 1x4g_A Nucleolysin TIAR; struc 99.8 3.2E-18 1.1E-22 108.1 11.2 81 12-98 21-102 (109)
144 2e5j_A Methenyltetrahydrofolat 99.8 2.3E-18 7.8E-23 106.6 10.3 81 11-96 14-95 (97)
145 1x4c_A Splicing factor, argini 99.8 7.3E-18 2.5E-22 106.3 12.7 81 10-97 9-95 (108)
146 1nu4_A U1A RNA binding domain; 99.8 5.5E-19 1.9E-23 109.3 7.2 82 12-96 4-90 (97)
147 3s8s_A Histone-lysine N-methyl 99.8 2.2E-18 7.6E-23 108.9 10.0 67 105-171 4-71 (110)
148 2dgu_A Heterogeneous nuclear r 99.8 5.8E-18 2E-22 105.8 11.7 82 10-99 5-87 (103)
149 2xnq_A Nuclear polyadenylated 99.8 3.8E-18 1.3E-22 105.6 10.7 80 8-95 14-95 (97)
150 2jvr_A Nucleolar protein 3; RN 99.8 1E-18 3.5E-23 110.4 8.2 80 12-95 24-105 (111)
151 1wf1_A RNA-binding protein RAL 99.8 5E-18 1.7E-22 107.4 11.3 77 12-96 23-101 (110)
152 2la4_A Nuclear and cytoplasmic 99.8 2.3E-18 7.8E-23 107.3 9.4 76 13-94 24-100 (101)
153 1x4f_A Matrin 3; structural ge 99.8 3.1E-18 1.1E-22 108.0 10.1 79 13-97 22-104 (112)
154 3q2s_C Cleavage and polyadenyl 99.8 1.4E-18 4.8E-23 123.4 9.4 81 15-95 67-150 (229)
155 2ytc_A PRE-mRNA-splicing facto 99.8 4.8E-18 1.7E-22 102.5 10.5 79 8-92 4-84 (85)
156 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-17 4.6E-22 103.4 12.4 82 8-97 7-91 (99)
157 2hgn_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 116.5 5.5 85 11-97 41-125 (139)
158 2jvo_A Nucleolar protein 3; nu 99.8 4.1E-18 1.4E-22 107.4 9.7 78 11-96 26-104 (108)
159 1fjc_A Nucleolin RBD2, protein 99.8 1.5E-18 5.2E-23 107.1 7.5 83 9-96 9-92 (96)
160 2lkz_A RNA-binding protein 5; 99.8 1.1E-18 3.7E-23 107.4 6.5 69 103-171 5-76 (95)
161 2f3j_A RNA and export factor b 99.8 3.7E-18 1.3E-22 116.7 9.8 84 12-96 84-168 (177)
162 3md3_A Nuclear and cytoplasmic 99.8 1.1E-17 3.9E-22 112.6 12.0 83 11-93 82-165 (166)
163 2i2y_A Fusion protein consists 99.8 5.5E-18 1.9E-22 112.9 10.3 81 10-95 67-148 (150)
164 3d2w_A TAR DNA-binding protein 99.8 3.8E-18 1.3E-22 103.9 8.1 80 11-96 6-85 (89)
165 2e5g_A U6 snRNA-specific termi 99.8 2.7E-17 9.2E-22 101.1 11.9 80 13-97 5-84 (94)
166 2e44_A Insulin-like growth fac 99.8 8.8E-18 3E-22 103.7 9.7 81 12-96 11-93 (96)
167 2lxi_A RNA-binding protein 10; 99.8 1.4E-18 4.7E-23 106.3 5.9 64 107-170 1-66 (91)
168 2lcw_A RNA-binding protein FUS 99.6 7.2E-20 2.5E-24 117.0 0.0 87 12-98 3-98 (116)
169 2kvi_A Nuclear polyadenylated 99.7 4.7E-18 1.6E-22 104.9 8.2 79 11-97 5-85 (96)
170 2cqh_A IGF-II mRNA-binding pro 99.7 6.6E-18 2.3E-22 103.6 8.6 80 12-98 4-86 (93)
171 2lea_A Serine/arginine-rich sp 99.7 3.4E-18 1.2E-22 112.0 7.2 106 59-171 5-112 (135)
172 2cjk_A Nuclear polyadenylated 99.7 5.2E-18 1.8E-22 114.6 7.8 82 14-95 85-166 (167)
173 2g4b_A Splicing factor U2AF 65 99.7 2.3E-17 7.7E-22 112.0 10.8 80 13-92 91-171 (172)
174 1whx_A Hypothetical protein ri 99.7 1E-17 3.5E-22 106.1 8.3 77 13-95 7-84 (111)
175 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.8E-22 110.6 8.8 83 12-97 41-132 (143)
176 1x5p_A Negative elongation fac 99.7 1.2E-16 4E-21 98.8 12.7 82 9-98 8-90 (97)
177 2qfj_A FBP-interacting repress 99.7 4.1E-17 1.4E-21 114.5 11.8 85 14-98 123-208 (216)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 8.7E-18 3E-22 102.1 7.3 79 14-98 3-81 (88)
179 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.3E-17 7.9E-22 99.5 8.9 68 104-171 4-72 (85)
180 2yh0_A Splicing factor U2AF 65 99.7 4.6E-17 1.6E-21 112.8 11.7 84 13-96 111-195 (198)
181 2div_A TRNA selenocysteine ass 99.7 2.7E-17 9.3E-22 102.0 9.5 69 103-171 5-75 (99)
182 2voo_A Lupus LA protein; RNA-b 99.7 3.1E-17 1.1E-21 113.6 10.7 80 15-95 108-187 (193)
183 2cqc_A Arginine/serine-rich sp 99.7 5.3E-17 1.8E-21 99.9 10.6 70 102-171 10-80 (95)
184 2dnl_A Cytoplasmic polyadenyla 99.7 1.4E-17 4.7E-22 106.0 8.0 78 13-92 5-85 (114)
185 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.4E-17 1.5E-21 98.6 9.6 67 105-171 4-71 (87)
186 1sjr_A Polypyrimidine tract-bi 99.7 9.2E-17 3.1E-21 107.3 11.8 80 13-96 43-125 (164)
187 2j8a_A Histone-lysine N-methyl 99.7 1.6E-17 5.5E-22 105.7 7.7 77 17-93 3-94 (136)
188 1wg1_A KIAA1579 protein, homol 99.7 3.1E-17 1.1E-21 99.6 8.8 76 14-96 3-79 (88)
189 2x1f_A MRNA 3'-END-processing 99.7 3.9E-17 1.3E-21 100.7 9.3 66 106-171 1-67 (96)
190 3md1_A Nuclear and cytoplasmic 99.7 5.2E-17 1.8E-21 97.5 9.5 64 108-171 2-66 (83)
191 1x4e_A RNA binding motif, sing 99.7 1.5E-17 5E-22 100.4 7.1 66 105-170 3-69 (85)
192 1whw_A Hypothetical protein ri 99.7 5.1E-17 1.7E-21 100.8 9.6 68 104-171 5-73 (99)
193 2dnz_A Probable RNA-binding pr 99.7 7E-17 2.4E-21 99.4 9.9 67 105-171 3-70 (95)
194 3p5t_L Cleavage and polyadenyl 99.7 1.5E-17 5.2E-22 101.4 6.8 64 108-171 2-68 (90)
195 2jrs_A RNA-binding protein 39; 99.7 7.6E-17 2.6E-21 101.6 10.2 71 101-171 20-91 (108)
196 1p27_B RNA-binding protein 8A; 99.7 8.8E-17 3E-21 100.9 10.5 69 103-171 19-88 (106)
197 3pgw_S U1-70K; protein-RNA com 99.7 6E-17 2.1E-21 124.8 11.7 84 13-96 99-183 (437)
198 2hzc_A Splicing factor U2AF 65 99.7 5.5E-17 1.9E-21 98.2 9.1 73 13-91 3-86 (87)
199 3s7r_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 99.2 8.2 66 103-168 7-73 (87)
200 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-16 4.4E-21 100.0 11.1 68 103-171 11-79 (105)
201 1x5u_A Splicing factor 3B subu 99.7 8.6E-17 2.9E-21 100.8 10.3 70 102-171 10-80 (105)
202 2dgp_A Bruno-like 4, RNA bindi 99.7 5.3E-17 1.8E-21 101.9 9.2 69 103-171 9-78 (106)
203 2dgs_A DAZ-associated protein 99.7 8.6E-17 2.9E-21 99.7 10.0 68 103-171 6-74 (99)
204 1s79_A Lupus LA protein; RRM, 99.7 5.3E-17 1.8E-21 101.4 9.0 65 104-170 8-73 (103)
205 2e5h_A Zinc finger CCHC-type a 99.7 7.2E-17 2.4E-21 99.1 9.4 69 103-171 12-81 (94)
206 1oo0_B CG8781-PA, drosophila Y 99.7 8.2E-17 2.8E-21 101.7 9.9 70 102-171 21-91 (110)
207 2dhg_A TRNA selenocysteine ass 99.7 1.2E-16 4E-21 100.0 10.4 68 103-171 5-74 (104)
208 2do4_A Squamous cell carcinoma 99.7 1.6E-16 5.4E-21 98.7 11.0 68 103-171 13-81 (100)
209 2la6_A RNA-binding protein FUS 99.7 1.3E-16 4.5E-21 98.9 10.5 69 103-171 9-86 (99)
210 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-16 4.3E-21 107.8 11.3 81 12-92 85-168 (168)
211 2dnm_A SRP46 splicing factor; 99.7 5.3E-17 1.8E-21 101.4 8.7 69 103-171 9-78 (103)
212 2cpz_A CUG triplet repeat RNA- 99.7 1E-16 3.5E-21 102.1 10.2 70 102-171 20-90 (115)
213 2dgo_A Cytotoxic granule-assoc 99.7 1.5E-16 5.1E-21 101.3 10.9 70 102-171 10-80 (115)
214 3pgw_S U1-70K; protein-RNA com 99.7 3.4E-18 1.2E-22 131.7 3.6 68 104-171 99-167 (437)
215 1x4h_A RNA-binding protein 28; 99.7 1.6E-16 5.5E-21 100.5 10.5 67 103-169 11-78 (111)
216 2cq0_A Eukaryotic translation 99.7 9.5E-17 3.2E-21 100.3 9.3 69 103-171 11-80 (103)
217 3nmr_A Cugbp ELAV-like family 99.7 7.7E-17 2.6E-21 109.5 9.5 80 12-92 91-174 (175)
218 1x5s_A Cold-inducible RNA-bind 99.7 9.7E-17 3.3E-21 100.0 9.2 69 103-171 8-77 (102)
219 2cqd_A RNA-binding region cont 99.7 9.6E-17 3.3E-21 102.4 9.4 69 102-170 12-81 (116)
220 4f25_A Polyadenylate-binding p 99.7 7.5E-17 2.6E-21 102.7 8.9 63 107-171 5-68 (115)
221 2kxn_B Transformer-2 protein h 99.7 1.3E-16 4.6E-21 103.5 10.0 70 102-171 41-111 (129)
222 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.1E-16 3.8E-21 108.3 9.9 68 104-171 69-137 (165)
223 2cq2_A Hypothetical protein LO 99.7 6.9E-17 2.4E-21 101.9 8.2 78 11-94 20-105 (114)
224 2cph_A RNA binding motif prote 99.7 2.1E-16 7.2E-21 99.3 10.4 69 103-171 11-82 (107)
225 1x5t_A Splicing factor 3B subu 99.7 7.2E-17 2.5E-21 99.5 8.1 67 105-171 3-71 (96)
226 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.1E-17 2.4E-21 100.6 8.0 68 104-171 9-77 (102)
227 2khc_A Testis-specific RNP-typ 99.7 1.2E-16 4E-21 102.2 9.2 70 102-171 35-105 (118)
228 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.9E-21 97.6 9.7 68 103-171 12-80 (95)
229 2diu_A KIAA0430 protein; struc 99.7 3.1E-16 1.1E-20 94.5 10.4 75 14-98 6-87 (96)
230 3zzy_A Polypyrimidine tract-bi 99.7 4.3E-16 1.5E-20 100.5 11.7 80 12-96 24-107 (130)
231 2e5i_A Heterogeneous nuclear r 99.7 1.2E-15 3.9E-20 98.0 13.6 74 17-96 26-103 (124)
232 1p1t_A Cleavage stimulation fa 99.7 5.6E-17 1.9E-21 101.4 7.3 68 104-171 5-73 (104)
233 1fxl_A Paraneoplastic encephal 99.7 2.1E-16 7.1E-21 106.5 10.6 80 13-92 85-167 (167)
234 3beg_B Splicing factor, argini 99.7 5.9E-17 2E-21 103.2 7.4 75 14-95 14-94 (115)
235 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 99.4 8.6 61 104-170 13-74 (105)
236 4f02_A Polyadenylate-binding p 99.7 1.3E-16 4.6E-21 112.1 9.7 80 15-96 102-182 (213)
237 2cpf_A RNA binding motif prote 99.7 1E-16 3.5E-21 99.2 8.1 67 105-171 3-73 (98)
238 2kt5_A RNA and export factor-b 99.7 3.1E-16 1E-20 101.2 10.5 68 103-171 31-99 (124)
239 2fy1_A RNA-binding motif prote 99.7 1.7E-16 5.8E-21 101.2 9.1 67 104-171 4-71 (116)
240 3ucg_A Polyadenylate-binding p 99.7 1.8E-16 6.3E-21 96.3 8.9 65 106-171 5-70 (89)
241 3n9u_C Cleavage and polyadenyl 99.7 1.6E-16 5.6E-21 106.3 9.4 66 106-171 54-122 (156)
242 2krb_A Eukaryotic translation 99.7 8.8E-17 3E-21 96.1 7.1 62 108-171 2-70 (81)
243 3ulh_A THO complex subunit 4; 99.7 2.9E-16 9.9E-21 98.7 9.8 68 103-171 25-93 (107)
244 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.4E-17 2.5E-21 95.4 6.6 62 108-169 1-63 (77)
245 3ns6_A Eukaryotic translation 99.7 1E-16 3.5E-21 99.6 7.4 67 105-171 4-77 (100)
246 2m2b_A RNA-binding protein 10; 99.7 1.1E-16 3.7E-21 104.3 7.8 69 102-171 18-89 (131)
247 2pe8_A Splicing factor 45; RRM 99.7 5.2E-16 1.8E-20 97.1 10.6 82 13-94 5-93 (105)
248 2d9p_A Polyadenylate-binding p 99.7 3.8E-16 1.3E-20 97.5 9.9 67 103-171 11-78 (103)
249 4a8x_A RNA-binding protein wit 99.7 1.5E-16 5.3E-21 96.4 7.8 66 106-171 3-70 (88)
250 2mss_A Protein (musashi1); RNA 99.7 1E-16 3.6E-21 94.3 6.7 61 109-170 1-62 (75)
251 2dng_A Eukaryotic translation 99.7 4.3E-16 1.5E-20 97.3 9.8 68 102-171 10-78 (103)
252 2rs2_A Musashi-1, RNA-binding 99.7 2E-16 7E-21 99.8 8.4 66 104-169 22-88 (109)
253 2cpe_A RNA-binding protein EWS 99.7 2.8E-16 9.5E-21 99.7 9.0 69 103-171 11-88 (113)
254 1u6f_A Tcubp1, RNA-binding pro 99.7 4E-16 1.4E-20 102.6 10.0 69 103-171 38-107 (139)
255 2cqg_A TDP-43, TAR DNA-binding 99.7 5.6E-16 1.9E-20 96.7 10.1 66 102-167 10-76 (103)
256 3ex7_B RNA-binding protein 8A; 99.7 3.6E-16 1.2E-20 101.1 9.5 69 103-171 18-87 (126)
257 1x5o_A RNA binding motif, sing 99.7 5.7E-16 2E-20 98.4 10.2 68 103-171 21-89 (114)
258 2cq4_A RNA binding motif prote 99.7 2.7E-16 9.2E-21 100.0 8.6 67 104-171 22-89 (114)
259 2dh8_A DAZ-associated protein 99.7 3E-16 1E-20 98.3 8.6 67 103-170 12-79 (105)
260 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.2E-16 2.8E-20 95.9 10.5 68 102-171 10-78 (103)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.9E-16 2.3E-20 101.4 10.6 69 102-170 58-127 (140)
262 2dgv_A HnRNP M, heterogeneous 99.7 7.3E-16 2.5E-20 94.2 9.9 66 104-171 5-71 (92)
263 2bz2_A Negative elongation fac 99.7 4.1E-16 1.4E-20 100.1 9.1 78 11-96 34-112 (121)
264 3r27_A HnRNP L, heterogeneous 99.7 3E-16 1E-20 96.7 8.1 62 103-170 17-79 (100)
265 2cq3_A RNA-binding protein 9; 99.7 1.2E-15 4.1E-20 95.2 11.0 68 102-171 10-78 (103)
266 2cqp_A RNA-binding protein 12; 99.7 2.3E-16 7.9E-21 97.6 7.6 68 104-171 12-80 (98)
267 1wi8_A EIF-4B, eukaryotic tran 99.7 4.3E-16 1.5E-20 97.4 8.8 67 103-171 11-79 (104)
268 2ek1_A RNA-binding protein 12; 99.7 1.5E-16 5.1E-21 97.9 6.5 67 105-171 13-80 (95)
269 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-16 6.3E-21 98.5 6.9 67 103-171 15-83 (100)
270 1fje_B Nucleolin RBD12, protei 99.7 4.2E-16 1.4E-20 106.0 9.3 79 12-95 95-174 (175)
271 2dgx_A KIAA0430 protein; RRM d 99.7 7.8E-16 2.7E-20 94.9 9.0 64 105-171 7-75 (96)
272 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-15 3.7E-20 102.4 10.4 68 104-171 36-104 (156)
273 2do0_A HnRNP M, heterogeneous 99.7 1.3E-15 4.5E-20 96.7 10.2 68 103-171 11-79 (114)
274 2nlw_A Eukaryotic translation 99.7 4.7E-16 1.6E-20 97.4 8.1 66 104-171 12-84 (105)
275 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-16 5.3E-21 93.5 5.3 60 109-168 1-61 (75)
276 1wg5_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 96.1 8.9 66 104-171 12-79 (104)
277 2cq1_A PTB-like protein L; RRM 99.6 6.8E-16 2.3E-20 95.8 8.2 62 102-169 10-72 (101)
278 2wbr_A GW182, gawky, LD47780P; 99.6 7.9E-16 2.7E-20 91.9 8.0 59 107-171 7-66 (89)
279 2ad9_A Polypyrimidine tract-bi 99.6 5.2E-16 1.8E-20 98.9 7.6 61 103-169 27-88 (119)
280 2ki2_A SS-DNA binding protein 99.6 1.5E-16 5.2E-21 96.9 4.9 63 108-171 2-65 (90)
281 1wex_A Hypothetical protein (r 99.6 1.5E-15 5.1E-20 94.8 9.0 62 103-170 11-73 (104)
282 2dnl_A Cytoplasmic polyadenyla 99.6 6.5E-16 2.2E-20 98.2 7.3 63 105-168 6-72 (114)
283 2err_A Ataxin-2-binding protei 99.6 1E-15 3.5E-20 96.5 8.2 68 102-171 24-92 (109)
284 2hgn_A Heterogeneous nuclear r 99.6 1.9E-16 6.6E-21 103.8 4.9 106 59-171 2-108 (139)
285 1x4b_A Heterogeneous nuclear r 99.6 8.2E-16 2.8E-20 98.0 7.7 66 104-170 24-90 (116)
286 1x4a_A Splicing factor, argini 99.6 3.6E-15 1.2E-19 94.0 10.6 67 102-171 17-84 (109)
287 2dis_A Unnamed protein product 99.6 9.8E-16 3.3E-20 96.6 7.9 65 105-169 6-73 (109)
288 2jwn_A Embryonic polyadenylate 99.6 1E-15 3.4E-20 98.7 8.1 66 105-171 34-100 (124)
289 2dgw_A Probable RNA-binding pr 99.6 2.3E-15 7.7E-20 91.8 9.1 65 104-171 7-72 (91)
290 1wez_A HnRNP H', FTP-3, hetero 99.6 9.7E-16 3.3E-20 95.5 7.5 66 103-171 11-77 (102)
291 2xs2_A Deleted in azoospermia- 99.6 3.5E-16 1.2E-20 97.5 5.5 66 104-170 6-75 (102)
292 2cpy_A RNA-binding protein 12; 99.6 1.2E-15 4E-20 97.0 7.6 66 103-170 11-78 (114)
293 2dit_A HIV TAT specific factor 99.6 1E-14 3.4E-19 92.4 11.9 86 9-98 8-105 (112)
294 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.9E-20 108.3 8.2 79 12-96 130-230 (240)
295 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-15 3.7E-20 96.1 7.2 66 104-171 8-77 (107)
296 2db1_A Heterogeneous nuclear r 99.6 2.3E-15 7.8E-20 96.3 8.3 66 104-171 14-83 (118)
297 3q2s_C Cleavage and polyadenyl 99.6 1.7E-15 5.7E-20 107.5 8.2 66 106-171 67-135 (229)
298 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.2E-20 99.6 7.0 65 104-170 41-109 (136)
299 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.5E-20 95.7 7.2 63 103-171 21-86 (114)
300 2cpi_A CCR4-NOT transcription 99.6 1.7E-15 5.8E-20 95.8 7.4 68 104-171 12-86 (111)
301 1fj7_A Nucleolin RBD1, protein 99.6 3.8E-16 1.3E-20 97.1 4.2 66 104-171 14-80 (101)
302 2a3j_A U1 small nuclear ribonu 99.6 4.3E-15 1.5E-19 95.9 9.1 65 104-171 26-95 (127)
303 2dnn_A RNA-binding protein 12; 99.6 4.1E-15 1.4E-19 93.6 8.5 64 105-171 14-78 (109)
304 2cpx_A Hypothetical protein FL 99.6 7.2E-16 2.5E-20 98.1 5.0 68 104-171 22-90 (115)
305 1wel_A RNA-binding protein 12; 99.6 9.7E-16 3.3E-20 98.8 5.5 67 104-171 22-89 (124)
306 2fc9_A NCL protein; structure 99.6 5.8E-15 2E-19 91.7 8.8 66 102-171 10-76 (101)
307 1x4c_A Splicing factor, argini 99.6 7.2E-15 2.5E-19 92.5 9.3 60 105-171 13-73 (108)
308 1why_A Hypothetical protein ri 99.6 6.4E-15 2.2E-19 90.9 8.9 62 104-171 14-76 (97)
309 3lqv_A PRE-mRNA branch site pr 99.6 7.6E-15 2.6E-19 93.3 9.5 64 105-171 6-70 (115)
310 2ytc_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.7E-19 87.6 9.6 62 103-170 8-71 (85)
311 2dnq_A RNA-binding protein 4B; 99.6 8.7E-15 3E-19 89.0 9.2 60 104-171 5-65 (90)
312 2hgm_A HNRPF protein, heteroge 99.6 4.3E-15 1.5E-19 95.7 7.9 64 104-169 39-105 (126)
313 1x4d_A Matrin 3; structural ge 99.6 3E-15 1E-19 92.9 6.2 61 104-170 12-74 (102)
314 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-14 4.6E-19 105.8 10.7 77 12-93 203-281 (282)
315 2dha_A FLJ20171 protein; RRM d 99.6 4E-15 1.4E-19 95.5 6.8 64 105-170 21-89 (123)
316 2cpj_A Non-POU domain-containi 99.6 1.2E-14 4.2E-19 89.9 8.8 63 103-171 11-74 (99)
317 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-14 4.2E-19 100.7 9.7 77 14-95 118-197 (198)
318 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-14 4.1E-19 91.6 8.7 62 104-171 22-84 (109)
319 2jvr_A Nucleolar protein 3; RN 99.6 5.9E-15 2E-19 93.1 7.2 62 106-171 27-90 (111)
320 2d9o_A DNAJ (HSP40) homolog, s 99.6 1E-13 3.5E-18 85.7 12.6 77 14-96 8-91 (100)
321 1nu4_A U1A RNA binding domain; 99.6 3.1E-15 1.1E-19 92.2 5.7 65 104-171 5-74 (97)
322 2voo_A Lupus LA protein; RNA-b 99.6 1.5E-14 5E-19 100.1 9.6 103 67-170 63-172 (193)
323 2jvo_A Nucleolar protein 3; nu 99.6 1.2E-14 4E-19 91.5 8.3 62 102-171 26-88 (108)
324 2lcw_A RNA-binding protein FUS 99.3 1.9E-16 6.4E-21 101.0 0.0 68 104-171 4-80 (116)
325 2f3j_A RNA and export factor b 99.6 1.4E-14 4.6E-19 98.9 9.1 68 103-171 84-152 (177)
326 2adc_A Polypyrimidine tract-bi 99.6 2.5E-14 8.5E-19 101.5 10.8 77 14-95 149-228 (229)
327 2la4_A Nuclear and cytoplasmic 99.6 2E-14 6.7E-19 89.3 9.0 60 106-171 26-86 (101)
328 1fjc_A Nucleolin RBD2, protein 99.6 7.8E-15 2.7E-19 90.3 6.9 63 103-170 12-75 (96)
329 2hvz_A Splicing factor, argini 99.6 6.2E-15 2.1E-19 91.6 6.5 59 108-171 1-60 (101)
330 2j8a_A Histone-lysine N-methyl 99.6 6.4E-15 2.2E-19 93.8 6.5 63 108-170 3-80 (136)
331 2fc8_A NCL protein; structure 99.6 2.3E-14 7.9E-19 89.1 8.9 66 103-171 11-77 (102)
332 1whx_A Hypothetical protein ri 99.6 1.3E-14 4.5E-19 91.7 7.9 60 106-171 9-69 (111)
333 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-14 9.1E-19 88.1 9.0 64 103-171 15-79 (97)
334 3beg_B Splicing factor, argini 99.6 1.2E-14 4.2E-19 92.4 7.5 59 106-171 15-74 (115)
335 3tyt_A Heterogeneous nuclear r 99.6 8.9E-15 3E-19 102.2 7.4 76 14-91 121-203 (205)
336 2dgu_A Heterogeneous nuclear r 99.6 2.5E-14 8.6E-19 89.2 8.7 60 104-171 8-68 (103)
337 2dnp_A RNA-binding protein 14; 99.6 3.1E-14 1.1E-18 86.5 8.9 61 103-171 5-66 (90)
338 3v4m_A Splicing factor U2AF 65 99.5 2.8E-14 9.4E-19 89.2 8.5 81 14-94 3-96 (105)
339 3sde_A Paraspeckle component 1 99.5 3E-14 1E-18 103.0 9.9 81 15-96 95-180 (261)
340 2dgt_A RNA-binding protein 30; 99.5 3.9E-14 1.3E-18 86.5 9.0 61 103-171 6-67 (92)
341 2cpd_A Apobec-1 stimulating pr 99.5 7.1E-14 2.4E-18 86.5 10.1 61 103-171 11-74 (99)
342 2pe8_A Splicing factor 45; RRM 99.5 6.3E-14 2.2E-18 87.5 9.7 68 104-171 5-79 (105)
343 1x4f_A Matrin 3; structural ge 99.5 1.4E-14 4.8E-19 91.2 6.5 60 104-169 22-83 (112)
344 1jmt_A Splicing factor U2AF 35 99.5 3.8E-15 1.3E-19 93.0 3.9 71 21-92 20-103 (104)
345 3d2w_A TAR DNA-binding protein 99.5 2.9E-14 1E-18 86.5 7.6 56 104-164 8-64 (89)
346 1sjr_A Polypyrimidine tract-bi 99.5 4.2E-14 1.4E-18 94.5 8.9 63 105-171 44-107 (164)
347 3zzy_A Polypyrimidine tract-bi 99.5 6.1E-14 2.1E-18 90.4 9.0 62 105-171 26-89 (130)
348 2xnq_A Nuclear polyadenylated 99.5 8.6E-14 2.9E-18 85.8 9.2 61 103-171 18-80 (97)
349 2e5g_A U6 snRNA-specific termi 99.5 9.2E-14 3.1E-18 85.2 9.1 61 105-171 6-67 (94)
350 2kvi_A Nuclear polyadenylated 99.5 7.9E-14 2.7E-18 85.8 8.3 60 104-171 7-68 (96)
351 2hzc_A Splicing factor U2AF 65 99.5 7.5E-14 2.6E-18 84.2 8.0 60 105-171 4-75 (87)
352 3ue2_A Poly(U)-binding-splicin 99.5 7.6E-14 2.6E-18 88.9 8.3 80 15-94 19-108 (118)
353 2cqh_A IGF-II mRNA-binding pro 99.5 3E-14 1E-18 87.1 6.1 60 104-170 5-66 (93)
354 2e5i_A Heterogeneous nuclear r 99.5 1.9E-13 6.6E-18 87.6 9.6 58 108-171 26-85 (124)
355 1wf1_A RNA-binding protein RAL 99.5 1E-13 3.4E-18 87.4 8.2 78 83-171 6-85 (110)
356 3egn_A RNA-binding protein 40; 99.5 1.2E-14 4E-19 96.0 3.8 68 104-171 42-115 (143)
357 1wg1_A KIAA1579 protein, homol 99.5 6.8E-14 2.3E-18 84.7 6.7 59 106-171 4-63 (88)
358 2e44_A Insulin-like growth fac 99.5 1.2E-13 4.3E-18 84.8 8.0 63 105-171 13-77 (96)
359 1x5p_A Negative elongation fac 99.5 3.9E-13 1.3E-17 82.8 9.7 61 104-171 12-72 (97)
360 2diu_A KIAA0430 protein; struc 99.5 2.8E-13 9.5E-18 81.7 8.2 56 106-171 7-69 (96)
361 1wf0_A TDP-43, TAR DNA-binding 99.5 7.5E-14 2.6E-18 84.5 5.5 56 105-165 3-59 (88)
362 3u1l_A PRE-mRNA-splicing facto 99.4 4.2E-13 1.4E-17 95.2 8.2 62 104-171 131-202 (240)
363 3tht_A Alkylated DNA repair pr 99.4 4.7E-13 1.6E-17 99.7 8.7 66 100-171 11-79 (345)
364 3tht_A Alkylated DNA repair pr 99.4 4.5E-13 1.5E-17 99.8 8.0 78 9-92 11-96 (345)
365 2bz2_A Negative elongation fac 99.4 1.2E-12 4E-17 83.9 7.9 61 104-171 36-96 (121)
366 3v4m_A Splicing factor U2AF 65 99.4 2.3E-12 8E-17 80.4 8.8 67 105-171 3-82 (105)
367 3s6e_A RNA-binding protein 39; 99.4 2.5E-12 8.6E-17 81.3 8.8 78 13-94 4-92 (114)
368 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6E-17 82.5 7.6 68 105-172 18-95 (118)
369 2dit_A HIV TAT specific factor 99.3 1.4E-11 4.9E-16 77.7 9.2 65 103-171 11-87 (112)
370 1jmt_A Splicing factor U2AF 35 99.3 1.9E-12 6.4E-17 80.7 3.7 59 112-171 20-91 (104)
371 2d9o_A DNAJ (HSP40) homolog, s 99.2 8.8E-11 3E-15 72.4 9.5 48 118-170 29-76 (100)
372 1owx_A Lupus LA protein, SS-B, 99.2 4.8E-11 1.7E-15 75.7 7.5 76 12-93 14-94 (121)
373 3s6e_A RNA-binding protein 39; 99.2 8.7E-11 3E-15 74.2 7.7 64 105-172 5-79 (114)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 6E-10 2.1E-14 66.5 8.9 73 15-95 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 7.2E-10 2.5E-14 70.3 7.0 59 105-169 16-77 (121)
376 3dxb_A Thioredoxin N-terminall 98.9 3.6E-09 1.2E-13 74.5 7.7 66 28-93 141-211 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.6E-14 64.0 5.4 72 14-93 13-93 (95)
378 2dhx_A Poly (ADP-ribose) polym 98.9 5.7E-08 1.9E-12 59.0 10.7 86 14-117 6-96 (104)
379 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4E-13 71.8 6.8 55 118-172 141-199 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.6 3.9E-07 1.3E-11 55.9 8.7 71 14-90 19-95 (117)
381 2dnr_A Synaptojanin-1; RRM dom 98.5 3.6E-07 1.2E-11 54.5 6.1 55 108-171 8-71 (91)
382 1ufw_A Synaptojanin 2; RNP dom 98.3 7.7E-07 2.6E-11 53.4 4.5 57 106-171 14-80 (95)
383 2l9w_A U4/U6 snRNA-associated- 98.2 5.6E-06 1.9E-10 50.8 7.0 60 106-171 20-85 (117)
384 1whv_A Poly(A)-specific ribonu 98.1 1.8E-05 6.2E-10 47.5 7.5 61 8-77 8-68 (100)
385 1wwh_A Nucleoporin 35, nucleop 98.0 6.4E-05 2.2E-09 47.1 9.2 76 11-93 19-95 (119)
386 1whv_A Poly(A)-specific ribonu 98.0 4.2E-05 1.4E-09 45.9 7.7 56 104-168 13-69 (100)
387 1uw4_A UPF3X; nonsense mediate 98.0 4.6E-05 1.6E-09 45.6 7.5 67 17-83 2-71 (91)
388 1wey_A Calcipressin 1; structu 97.9 7.3E-05 2.5E-09 45.6 7.3 76 15-96 4-85 (104)
389 1uw4_A UPF3X; nonsense mediate 97.9 0.00012 4E-09 43.8 7.7 64 108-171 2-68 (91)
390 3ctr_A Poly(A)-specific ribonu 97.8 7E-05 2.4E-09 45.1 5.7 52 108-168 7-59 (101)
391 3ctr_A Poly(A)-specific ribonu 97.7 8.1E-05 2.8E-09 44.8 4.8 52 17-77 7-58 (101)
392 1wwh_A Nucleoporin 35, nucleop 97.5 0.0005 1.7E-08 43.0 6.8 59 105-169 22-80 (119)
393 2dhx_A Poly (ADP-ribose) polym 97.5 0.001 3.5E-08 40.4 7.8 55 105-167 6-66 (104)
394 3p3d_A Nucleoporin 53; structu 97.4 0.00024 8.3E-09 45.1 4.8 78 15-93 6-97 (132)
395 2l08_A Regulator of nonsense t 97.2 0.00078 2.7E-08 40.5 5.4 68 15-82 8-78 (97)
396 2l08_A Regulator of nonsense t 97.2 0.00063 2.2E-08 41.0 4.9 64 107-170 9-75 (97)
397 3pq1_A Poly(A) RNA polymerase; 97.1 0.00035 1.2E-08 54.0 4.1 60 15-80 52-111 (464)
398 1wey_A Calcipressin 1; structu 96.7 0.0067 2.3E-07 36.9 6.1 60 106-171 4-69 (104)
399 3pq1_A Poly(A) RNA polymerase; 96.4 0.0027 9.2E-08 49.1 4.0 58 104-166 50-107 (464)
400 3p3d_A Nucleoporin 53; structu 96.2 0.0046 1.6E-07 39.3 3.6 62 108-169 8-83 (132)
401 3d45_A Poly(A)-specific ribonu 94.4 0.28 9.6E-06 38.5 9.0 55 106-169 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 94.0 0.25 8.6E-06 38.8 8.0 55 14-77 438-492 (507)
403 4eyt_A Telomerase associated p 61.1 22 0.00076 20.7 7.8 56 14-77 10-65 (129)
404 4eyt_A Telomerase associated p 59.8 24 0.00081 20.6 7.8 53 108-168 13-66 (129)
405 2v94_A RPS24, 30S ribosomal pr 53.6 35 0.0012 20.7 5.9 48 26-74 37-89 (107)
406 1xn9_A 30S ribosomal protein S 52.1 36 0.0012 20.4 6.0 50 26-76 28-82 (101)
407 1ywx_A 30S ribosomal protein S 51.1 37 0.0013 20.3 5.9 48 26-74 28-80 (102)
408 4e8u_A Putative uncharacterize 44.9 65 0.0022 21.3 5.6 47 18-67 14-71 (172)
409 2xzm_P RPS24E; ribosome, trans 42.8 65 0.0022 20.7 5.5 48 26-74 31-83 (149)
410 3lpe_A Putative transcription 37.3 30 0.001 20.1 2.8 25 146-170 48-72 (92)
411 2g1d_A 30S ribosomal protein S 36.5 33 0.0011 20.4 2.8 48 26-74 29-81 (98)
412 1fme_A FSD-EY peptide; beta-BE 33.2 31 0.0011 14.6 1.7 12 29-40 14-25 (28)
413 3fut_A Dimethyladenosine trans 32.5 56 0.0019 23.1 4.1 48 17-81 111-158 (271)
414 3u5c_Y RP50, 40S ribosomal pro 32.4 96 0.0033 19.6 6.5 48 26-74 33-85 (135)
415 3l3e_A DNA topoisomerase 2-bin 27.4 41 0.0014 19.8 2.3 34 8-42 10-43 (107)
416 3fry_A Probable copper-exporti 26.2 78 0.0027 16.6 6.2 55 108-169 7-62 (73)
417 1i4w_A Mitochondrial replicati 25.2 1.1E+02 0.0036 22.8 4.6 58 17-84 143-202 (353)
418 3ts2_A Protein LIN-28 homolog 25.1 10 0.00036 24.4 -0.8 28 31-66 2-29 (148)
419 3uzu_A Ribosomal RNA small sub 24.0 40 0.0014 24.0 2.0 49 17-81 115-163 (279)
420 2e5p_A Protein PHF1, PHD finge 23.9 81 0.0028 17.2 2.7 11 148-158 37-47 (68)
421 1hdj_A Human HSP40, HDJ-1; mol 23.9 60 0.002 17.7 2.4 20 21-40 8-27 (77)
422 2m0o_A PHD finger protein 1; t 23.9 78 0.0027 17.8 2.7 20 131-158 45-64 (79)
423 2ctp_A DNAJ homolog subfamily 23.7 60 0.0021 17.8 2.4 20 21-40 12-31 (78)
424 2dn9_A DNAJ homolog subfamily 23.5 61 0.0021 17.8 2.4 20 21-40 12-31 (79)
425 2och_A Hypothetical protein DN 23.2 63 0.0022 17.4 2.4 20 21-40 13-32 (73)
426 1gcc_A Ethylene responsive ele 22.3 69 0.0024 17.1 2.3 19 148-166 26-44 (63)
427 2knz_A Ubiquilin-4; cytoplasm, 21.4 69 0.0024 16.3 2.2 16 155-170 23-38 (53)
428 2eqj_A Metal-response element- 21.3 68 0.0023 17.5 2.1 10 148-157 41-50 (66)
429 3h7h_B Transcription elongatio 21.1 1E+02 0.0035 18.5 3.1 22 57-78 50-71 (106)
430 1qyr_A KSGA, high level kasuga 21.0 91 0.0031 21.7 3.4 24 17-40 91-114 (252)
431 2ej7_A HCG3 gene; HCG3 protein 20.9 51 0.0017 18.3 1.7 20 21-40 14-33 (82)
432 4aj5_1 SKA3, spindle and kinet 20.9 44 0.0015 19.9 1.4 12 30-41 90-101 (101)
433 2bwb_A Ubiquitin-like protein 20.7 81 0.0028 15.6 2.3 17 155-171 19-35 (46)
434 3tqs_A Ribosomal RNA small sub 20.4 38 0.0013 23.7 1.3 47 18-80 98-144 (255)
435 3p8b_B Transcription antitermi 20.3 81 0.0028 20.0 2.8 24 147-170 42-65 (152)
436 1ik9_C DNA ligase IV; DNA END 20.2 84 0.0029 14.8 2.2 15 26-40 20-34 (37)
437 2ctr_A DNAJ homolog subfamily 20.1 77 0.0026 17.9 2.4 20 21-40 12-31 (88)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.7e-38 Score=219.48 Aligned_cols=161 Identities=58% Similarity=1.026 Sum_probs=140.0
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
...+.++..+++|||+|||+++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|..|++.++..+.|+.
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp ----CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred ccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 34556677899999999999999999999999999999999999998899999999999999999999999889999999
Q ss_pred EEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 87 VETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 87 i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
|.|.++.+.............++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 9999988776555555556678999999999 999999999999999999999999888999999999999999999999
Q ss_pred HH
Q psy17262 166 CK 167 (172)
Q Consensus 166 ~~ 167 (172)
..
T Consensus 164 ~~ 165 (196)
T 1l3k_A 164 IQ 165 (196)
T ss_dssp HC
T ss_pred Hh
Confidence 86
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.9e-36 Score=204.71 Aligned_cols=151 Identities=25% Similarity=0.467 Sum_probs=140.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
++++|||+|||+++++++|+++|+.||+|.++.++.++.++.++|+|||+|.++++|..|++. ++..+.|+.+.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999999998999999999999999999999997 9999999999999887
Q ss_pred CCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+... ....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 81 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 81 PSSA------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCG------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcc------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 5532 34457899999999 999999999999999999999999888999999999999999999999999985
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.6e-37 Score=215.79 Aligned_cols=154 Identities=22% Similarity=0.423 Sum_probs=136.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
...+.++|||+|||+++|+++|+++|++||+|.+++++.++.++.++|||||+|.+.++|..|+.. ++..+.|+.+.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 345778999999999999999999999999999999999998999999999999999999999998 8899999999998
Q ss_pred ecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
++..... .......+|||+|||. +++++|+++|+.||.|..++++.+. +.++|+|||+|.+.++|.+|++.||
T Consensus 91 ~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 91 WSQRDPS----LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECCCCTH----HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccccc----ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 8764432 1233456899999999 9999999999999999999999885 4579999999999999999999999
Q ss_pred CC
Q psy17262 170 IE 171 (172)
Q Consensus 170 ~~ 171 (172)
|.
T Consensus 165 g~ 166 (213)
T 4f02_A 165 GM 166 (213)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.3e-36 Score=204.79 Aligned_cols=151 Identities=24% Similarity=0.391 Sum_probs=141.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
++++|||+|||+++++++|+++|+.||+|.+++++.++.++.++|+|||+|.++++|+.|++. ++..+.|+.+.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 578999999999999999999999999999999999988899999999999999999999986 9999999999999987
Q ss_pred CCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 94 PRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+... ....++|||+|||. +++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 82 ~~~~------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 82 PGGE------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp CCSS------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcc------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 6542 34457999999999 999999999999999999999999888999999999999999999999999985
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-36 Score=202.93 Aligned_cols=150 Identities=22% Similarity=0.467 Sum_probs=138.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
|+|||+|||+++++++|+++|+.||+|.+++++.++ ++.++|+|||+|.+.++|..|++. ++..+.|+.+.+.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999987 577999999999999999999977 999999999999988665
Q ss_pred CCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 96 DEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 96 ~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.. .......+|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 80 ~~----~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 80 QQ----SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp CC----CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CC----CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 43 2345567999999999 999999999999999999999999889999999999999999999999999974
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.8e-35 Score=199.12 Aligned_cols=151 Identities=24% Similarity=0.454 Sum_probs=133.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCC--CccceEEEEECCHHHHHHHHhc-CCCccC---CeEEE
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITK--RSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVVE 88 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~-~~~~~~---~~~i~ 88 (172)
++++|||+|||+++++++|+++|+.||+|.+++++.++.++ .++|||||+|.+.++|+.|++. ++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 7999999999999999999987 766654 56777
Q ss_pred eeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHH
Q psy17262 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~ 167 (172)
+.++.+... .....++|||+|||. +++++|+++|++||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..
T Consensus 82 ~~~~~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN-----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC-----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc-----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 776654432 234567999999999 9999999999999999999999886 588999999999999999999999
Q ss_pred hCCC
Q psy17262 168 YNIE 171 (172)
Q Consensus 168 ~~~~ 171 (172)
|||.
T Consensus 156 l~g~ 159 (175)
T 3nmr_A 156 MHQA 159 (175)
T ss_dssp HTTS
T ss_pred hcCC
Confidence 9974
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6e-36 Score=203.41 Aligned_cols=148 Identities=39% Similarity=0.830 Sum_probs=135.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
++++|||+|||+++|+++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|..|++. ...+.|+.+.+.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 679999999999999999999999999999999999988999999999999999999999996 5789999999988764
Q ss_pred CCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 95 RDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 95 ~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.. .....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++ +|+
T Consensus 81 ~~------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 81 RD------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp HH------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred hh------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 32 234566899999999 9999999999999999999999998889999999999999999999998 554
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.9e-35 Score=207.70 Aligned_cols=158 Identities=21% Similarity=0.491 Sum_probs=138.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..+++|||+|||+++++++|+++|+.||+|.+++++.++.++.++|+|||+|.+.++|..|++. ++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4568999999999999999999999999999999999888899999999999999999999996 899999999999877
Q ss_pred CCCCCCCC-----CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 93 VPRDEIGK-----PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 93 ~~~~~~~~-----~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
........ .......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 65432211 11234567999999999 9999999999999999999999998899999999999999999999999
Q ss_pred HhCCC
Q psy17262 167 KYNIE 171 (172)
Q Consensus 167 ~~~~~ 171 (172)
.|||.
T Consensus 186 ~l~g~ 190 (216)
T 2qfj_A 186 SMNLF 190 (216)
T ss_dssp HHTTC
T ss_pred HccCC
Confidence 99974
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=6e-33 Score=189.38 Aligned_cols=146 Identities=25% Similarity=0.552 Sum_probs=130.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCcc
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI 82 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (172)
.++++|||+|||+++|+++|+++|+.| | .|.++.+.. ++|+|||+|.++++|..|++.++..+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 357999999999999999999999999 6 666666543 57999999999999999995599999
Q ss_pred CCeEEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHH
Q psy17262 83 DGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVV 161 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a 161 (172)
.|+.+.|.++..... ....++|||+|||. +++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|
T Consensus 76 ~g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp TTEECEEECCSSCCC------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred cCceeeecCCcccCC------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 999999998754432 23367999999999 99999999999999999999999988899999999999999999
Q ss_pred HHHHHHhCCC
Q psy17262 162 DKIVCKYNIE 171 (172)
Q Consensus 162 ~~A~~~~~~~ 171 (172)
.+|+..|||.
T Consensus 150 ~~A~~~l~g~ 159 (172)
T 2g4b_A 150 DQAIAGLNGM 159 (172)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHcCCC
Confidence 9999999974
No 10
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.2e-33 Score=195.94 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=129.1
Q ss_pred CCcceEEEcCCC-CCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLD-YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
.++++|||+||| ..+++++|+++|+.||.|.+++++.+ ++|+|||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 79999999999999999999999764 479999999999999999997 99999999999998
Q ss_pred cCCCCCCCCC-------------------------------ccccccceEEEeCCCC-CCHHHHHHHHhcccce--eEEE
Q psy17262 92 AVPRDEIGKP-------------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFGTI--ESVN 137 (172)
Q Consensus 92 ~~~~~~~~~~-------------------------------~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v--~~~~ 137 (172)
+......... ....+.++|||+|||. +++++|+++|+.||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 7543211000 0013456899999999 9999999999999999 8898
Q ss_pred EeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 138 ~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+..+. +.++|+|||+|.+.++|.+|+..|||.
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 87764 455699999999999999999999984
No 11
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=2e-32 Score=198.70 Aligned_cols=144 Identities=24% Similarity=0.409 Sum_probs=131.4
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.+.......+++|||+|||+++|+++|+++|+.||.|..+.+.. ++|+|||+|.+.++|..|+.. ++..+.|+
T Consensus 13 ~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 13 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp CTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 33444557788999999999999999999999999999999864 469999999999999999997 99999999
Q ss_pred EEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q psy17262 86 VVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 86 ~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A 164 (172)
.|.|.++.+ ..+|||+|||. +++++|+++|+.||.|..+.++.+ .++.++|+|||+|.+.++|.+|
T Consensus 87 ~l~v~~a~~------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 87 PLRIRFATH------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp ECEEEECCC------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHH
T ss_pred eeEeeeccc------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHH
Confidence 999998854 45899999999 999999999999999999999998 5789999999999999999999
Q ss_pred HHHhC
Q psy17262 165 VCKYN 169 (172)
Q Consensus 165 ~~~~~ 169 (172)
+..+|
T Consensus 154 ~~~l~ 158 (261)
T 3sde_A 154 LERCG 158 (261)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99984
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.1e-32 Score=199.09 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=140.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|..|+.. ++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999999999988999999999999999999999977 899999999999998
Q ss_pred CCCCCCCCCccccccceEEEeCCCC-C-CHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 93 VPRDEIGKPEANATVKKMFVGGLKD-Q-EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~v~~l~~-~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.+.... ......++|||+|||. + ++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..|||
T Consensus 173 ~~~~~~---~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 248 (284)
T 3smz_A 173 DAGQLT---PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG 248 (284)
T ss_dssp CGGGCC---TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCC---cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 765432 2335667999999999 6 899999999999999999999886 688999999999999999999999997
Q ss_pred C
Q psy17262 171 E 171 (172)
Q Consensus 171 ~ 171 (172)
.
T Consensus 249 ~ 249 (284)
T 3smz_A 249 L 249 (284)
T ss_dssp C
T ss_pred C
Confidence 5
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.7e-32 Score=189.34 Aligned_cols=152 Identities=23% Similarity=0.536 Sum_probs=130.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCcc
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNI 82 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~ 82 (172)
..+++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|+.|+..++..+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357999999999999999999999999 4 5555554 3467999999999999999995599999
Q ss_pred CCeEEEeeecCCCCCCCC--------------CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCc
Q psy17262 83 DGRVVETKRAVPRDEIGK--------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAK 147 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~~~--------------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~ 147 (172)
.|+.|.|.++........ .......++|||+|||. +++++|+++|+.||.|..+.++.+..++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 999999998865532211 11224568999999999 999999999999999999999999888999
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 148 RGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 148 ~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+|+|||+|.+.++|.+|+..|||.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999999874
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2e-33 Score=192.38 Aligned_cols=151 Identities=21% Similarity=0.317 Sum_probs=130.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEee
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~ 90 (172)
.++.++++|||+|||+++++++|+++|+.||.+.. .++.+..++.++|||||+|.++++|..|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 45678899999999999999999999999997665 23333347789999999999999999999778899999999999
Q ss_pred ecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
++.+.... .....++|||+|||. +++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..||
T Consensus 87 ~~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 87 KPKGRDSK----KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp CCCCSSCS----TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCcccc----ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 98765432 345678999999999 9999999999999988776 4568899999999999999999999998
Q ss_pred CC
Q psy17262 170 IE 171 (172)
Q Consensus 170 ~~ 171 (172)
|.
T Consensus 158 g~ 159 (175)
T 1fje_B 158 GA 159 (175)
T ss_dssp EE
T ss_pred CC
Confidence 73
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.3e-31 Score=194.94 Aligned_cols=152 Identities=21% Similarity=0.363 Sum_probs=131.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
+..++++|||+|||+++++++|+ ++|+.||.|.++++.. ++.++|||||+|.+.++|+.|++. ++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999976 8999999999999876 777999999999999999999977 899999999
Q ss_pred EEeeecCCCCCCC-------------------------------------------------------------------
Q psy17262 87 VETKRAVPRDEIG------------------------------------------------------------------- 99 (172)
Q Consensus 87 i~v~~~~~~~~~~------------------------------------------------------------------- 99 (172)
|.|.++.......
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999886543200
Q ss_pred --------------------------------------CCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEee
Q psy17262 100 --------------------------------------KPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVT 140 (172)
Q Consensus 100 --------------------------------------~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~ 140 (172)
......+.++|||+|||. +++++|+++|+.||.|..++++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 001223457899999999 99999999999999999999985
Q ss_pred cCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 141 NKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 141 ~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+. +|+|||+|.+.++|.+|+..|||.
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCc
Confidence 43 579999999999999999999984
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=3.3e-31 Score=188.83 Aligned_cols=151 Identities=15% Similarity=0.268 Sum_probs=129.7
Q ss_pred CCCCCcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 11 TEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
....++++|||+|||+ ++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3346789999999999 99999999999999999999998764 78999999999999999986 99999999999
Q ss_pred eeecCCCCCCCCC-----------------------------ccccccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEE
Q psy17262 89 TKRAVPRDEIGKP-----------------------------EANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVN 137 (172)
Q Consensus 89 v~~~~~~~~~~~~-----------------------------~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~ 137 (172)
|.++......... ....+.++|||+|||. +++++|+++|+.|| .|..+.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 9988754211000 0123467899999999 99999999999999 999999
Q ss_pred EeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 138 ~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++.+ .+|+|||+|.+.++|.+|+..|||.
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCC
Confidence 8653 3679999999999999999999974
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=1.1e-31 Score=197.42 Aligned_cols=155 Identities=17% Similarity=0.309 Sum_probs=130.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..++|||+|||+++++++|+++|+.|| .|..+.++.++ .+.++|+|||+|.+.++|..|+.. ++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999887 477899999999999999999996 999999999999998
Q ss_pred CCCCCCCCC-ccccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCC-CCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 93 VPRDEIGKP-EANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKE-TGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.+....... ......++|||+|||. +++++|+++|+.||.|..+.++.+.. |+.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 876554443 3456678999999986 79999999999999999999998876 5899999999999999999999 99
Q ss_pred CCC
Q psy17262 169 NIE 171 (172)
Q Consensus 169 ~~~ 171 (172)
||.
T Consensus 274 ~g~ 276 (292)
T 2ghp_A 274 NRS 276 (292)
T ss_dssp TTE
T ss_pred cCC
Confidence 974
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=2.1e-31 Score=196.06 Aligned_cols=147 Identities=15% Similarity=0.210 Sum_probs=123.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
....+.++++|||+|||+++++++|+++|+.||+|.+++++.++.+ ++|+|||+|.+.++|..|++.++..+.|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 3444577899999999999999999999999999999999997633 57999999999999999997788999999999
Q ss_pred eeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
|.++ ..++|||+|||. +++++|+++|+.|| .|..+.++.+.. +.++|+|||+|.+.++|.+|+.
T Consensus 112 v~~~-------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 112 VSHL-------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEC-------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEC-------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 9976 256999999999 99999999999999 999999988765 7789999999999999999999
Q ss_pred HhCCC
Q psy17262 167 KYNIE 171 (172)
Q Consensus 167 ~~~~~ 171 (172)
.+||.
T Consensus 178 ~l~g~ 182 (292)
T 2ghp_A 178 KLNGL 182 (292)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 99874
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=5.5e-31 Score=193.07 Aligned_cols=139 Identities=19% Similarity=0.349 Sum_probs=128.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
.++++|||+|||+++|+++|+++|+.|| |..+.+ +.++|+|||+|.++++|..|++. ++..+.|+.+.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4678999999999999999999999999 888887 34679999999999999999987 899999999999975
Q ss_pred CCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 93 VPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
. ...+|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..+||.
T Consensus 93 ~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 93 P------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp C------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred C------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3 236899999999 999999999999999999999999889999999999999999999999999874
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.2e-31 Score=184.23 Aligned_cols=147 Identities=15% Similarity=0.283 Sum_probs=127.3
Q ss_pred CcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 15 SLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 15 ~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
.+++|||+|||+ ++++++|+++|+.||.|.+++++.++ +|+|||+|.+.++|+.|++. ++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998754 78999999999999999986 999999999999988
Q ss_pred CCCCCCCC-----------------------------CccccccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeec
Q psy17262 93 VPRDEIGK-----------------------------PEANATVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTN 141 (172)
Q Consensus 93 ~~~~~~~~-----------------------------~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~ 141 (172)
........ .....+.++|||+|||. +++++|+++|+.|| .|..+.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 75421100 01123468899999999 99999999999999 9999998654
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 142 KETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 142 ~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|+|||+|.+.++|.+|+..|||.
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 2689999999999999999999985
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=1.2e-24 Score=139.18 Aligned_cols=106 Identities=19% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..+.+|||+|||+++++++|+++|+.||.|.+++++.+. +.++|||||+|.+.++|+.|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999885 34799999999999999999987 999999999999998
Q ss_pred CCCCCCCCC--ccccccceEEEeCCCC-CCHH
Q psy17262 93 VPRDEIGKP--EANATVKKMFVGGLKD-QEED 121 (172)
Q Consensus 93 ~~~~~~~~~--~~~~~~~~l~v~~l~~-~~~~ 121 (172)
.++...... .......+|||+|||. +|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp SCCCC---------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCcccc
Confidence 776543322 2234456799999998 7775
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=9.3e-23 Score=137.26 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=95.9
Q ss_pred EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CC-CccCCeEE------EeeecCCCCCCCCCccccccceEEEeCCC
Q psy17262 45 DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNIDGRVV------ETKRAVPRDEIGKPEANATVKKMFVGGLK 116 (172)
Q Consensus 45 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~-~~~~~~~i------~v~~~~~~~~~~~~~~~~~~~~l~v~~l~ 116 (172)
.++++.+. ..++|||||+|.++++|++|++. ++ ..+.+... .....................+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 35566654 25899999999999999999976 32 22233221 11112122222233344567899999999
Q ss_pred C-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 117 D-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 117 ~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9 999999999999999999999999889999999999999999999999999873
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=9.7e-23 Score=126.77 Aligned_cols=81 Identities=21% Similarity=0.424 Sum_probs=76.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||+++|+++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457899999999999999999999999999999999998999999999999999999999987 999999999999998
Q ss_pred CC
Q psy17262 93 VP 94 (172)
Q Consensus 93 ~~ 94 (172)
.|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=4.9e-23 Score=126.25 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=75.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccCCeEEEeeec
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRA 92 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~~~i~v~~~ 92 (172)
+++|||+|||+++|+++|+++|+.|| +|.+++++.++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 799999999998999999999999999999999986 456789999999999
Q ss_pred CCCCC
Q psy17262 93 VPRDE 97 (172)
Q Consensus 93 ~~~~~ 97 (172)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=123.79 Aligned_cols=83 Identities=14% Similarity=0.364 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+.+.++|||+|||+++++++|+++|++||.|.+++++.++.|+.++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999998 99999999999998
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=1.9e-21 Score=118.18 Aligned_cols=83 Identities=40% Similarity=0.825 Sum_probs=76.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
..++.+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|++.++..+.|+.|.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34557889999999999999999999999999999999999988899999999999999999999988888899999999
Q ss_pred eec
Q psy17262 90 KRA 92 (172)
Q Consensus 90 ~~~ 92 (172)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=9.3e-21 Score=120.95 Aligned_cols=94 Identities=26% Similarity=0.442 Sum_probs=85.1
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
......+....++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|+.|++. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556667889999999999999999999999999999999999988999999999999999999999987 8899999
Q ss_pred eEEEeeecCCCCCCC
Q psy17262 85 RVVETKRAVPRDEIG 99 (172)
Q Consensus 85 ~~i~v~~~~~~~~~~ 99 (172)
+.|.|.++.+.....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 85 RQIRTNWATRKPPAP 99 (115)
T ss_dssp EECEEEESSCCCCCS
T ss_pred EEEEEEEccCCCCCC
Confidence 999999998775543
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=118.69 Aligned_cols=89 Identities=36% Similarity=0.682 Sum_probs=81.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
..+....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|++.++..+.|+.|.|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V 83 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 83 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999988899999999999999999999998889999999999
Q ss_pred eecCCCCCC
Q psy17262 90 KRAVPRDEI 98 (172)
Q Consensus 90 ~~~~~~~~~ 98 (172)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876544
No 29
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=119.88 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=84.5
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
......++...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 5 SSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp SSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 344556677889999999999999999999999999999999999988899999999999999999999997 8899999
Q ss_pred eEEEeeecCCCCCC
Q psy17262 85 RVVETKRAVPRDEI 98 (172)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (172)
+.|.|.++.+....
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999999876543
No 30
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=121.10 Aligned_cols=92 Identities=25% Similarity=0.538 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 5 YDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 5 ~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
...+.+..+.++++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|||||+|.+.++|+.|++. ++..+.
T Consensus 15 ~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 15 MANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3445556667889999999999999999999999999999999999988899999999999999999999987 999999
Q ss_pred CeEEEeeecCCCC
Q psy17262 84 GRVVETKRAVPRD 96 (172)
Q Consensus 84 ~~~i~v~~~~~~~ 96 (172)
|+.|.|.++.++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999987653
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-21 Score=120.69 Aligned_cols=93 Identities=25% Similarity=0.443 Sum_probs=84.0
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C------C
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R------P 79 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~------~ 79 (172)
...+.+..++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+.. + +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 34455667889999999999999999999999999999999999988899999999999999999999997 7 8
Q ss_pred CccCCeEEEeeecCCCCCCC
Q psy17262 80 HNIDGRVVETKRAVPRDEIG 99 (172)
Q Consensus 80 ~~~~~~~i~v~~~~~~~~~~ 99 (172)
..+.|+.|.|.++.++....
T Consensus 86 ~~~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp EESSSCEEEEECCCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccCC
Confidence 89999999999998765443
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=121.14 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=81.2
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
...+....++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+
T Consensus 14 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 14 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp -CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 33444456778999999999999999999999999999999999998899999999999999999999997 99999999
Q ss_pred EEEeeecCCCC
Q psy17262 86 VVETKRAVPRD 96 (172)
Q Consensus 86 ~i~v~~~~~~~ 96 (172)
.|.|.++.++.
T Consensus 94 ~l~V~~a~~~~ 104 (106)
T 1p27_B 94 PISVDWCFVRG 104 (106)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEeecCCC
Confidence 99999987653
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.6e-21 Score=117.98 Aligned_cols=89 Identities=16% Similarity=0.365 Sum_probs=81.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
.....+.+.++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|+|||+|.+.++|+.|++. ++..+.|+.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344555778999999999999999999999999999999999998 899999999999999999999987 889999999
Q ss_pred EEeeecCCCCC
Q psy17262 87 VETKRAVPRDE 97 (172)
Q Consensus 87 i~v~~~~~~~~ 97 (172)
|.|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (100)
T 2do4_A 88 IKVAISNSGPS 98 (100)
T ss_dssp EEEEECCCCSC
T ss_pred EEEEECCCCCC
Confidence 99999977643
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6.6e-21 Score=117.56 Aligned_cols=88 Identities=25% Similarity=0.460 Sum_probs=81.4
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.+...++.++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|+.. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 44556677899999999999999999999999999999999999988899999999999999999999997 99999999
Q ss_pred EEEeeecCC
Q psy17262 86 VVETKRAVP 94 (172)
Q Consensus 86 ~i~v~~~~~ 94 (172)
.|.|.++.+
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999998754
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=116.54 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=75.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
.+.++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999999988999999999999999999999997 899999999999998
Q ss_pred CCC
Q psy17262 93 VPR 95 (172)
Q Consensus 93 ~~~ 95 (172)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 36
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-20 Score=116.92 Aligned_cols=93 Identities=29% Similarity=0.494 Sum_probs=83.0
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCe
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (172)
.........+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+.. +..+.|+
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 83 (103)
T 2cqg_A 5 SSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGR 83 (103)
T ss_dssp CSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTE
T ss_pred CCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCe
Confidence 344555667889999999999999999999999999999999999988899999999999999999999995 6789999
Q ss_pred EEEeeecCCCCCCC
Q psy17262 86 VVETKRAVPRDEIG 99 (172)
Q Consensus 86 ~i~v~~~~~~~~~~ 99 (172)
.|.|.++.++....
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 84 WCDCKLPNSKQSQD 97 (103)
T ss_dssp EEEEECCCTTCCCC
T ss_pred EEEEEecCCCCcCC
Confidence 99999998775543
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.7e-21 Score=118.57 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=82.9
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
....+..+.++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|+|||+|.+.++|+.|+.. ++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3345567889999999999999999999999999999999999988999999999999999999999997 889999999
Q ss_pred EEeeecCCCCCC
Q psy17262 87 VETKRAVPRDEI 98 (172)
Q Consensus 87 i~v~~~~~~~~~ 98 (172)
|.|.++.+....
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 38
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=119.88 Aligned_cols=91 Identities=41% Similarity=0.846 Sum_probs=83.5
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i 87 (172)
....+....++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|||||+|.+.++|+.|+..++..+.|+.|
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l 87 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNI 87 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEE
Confidence 34556678899999999999999999999999999999999999889999999999999999999999998889999999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.++...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999877544
No 39
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=6.4e-21 Score=120.60 Aligned_cols=89 Identities=42% Similarity=0.780 Sum_probs=76.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
...++...++|||+|||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|+.|+...+..+.|+.|.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~ 97 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTID 97 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEE
Confidence 34455788999999999999999999999999999999999998889999999999999999999999977899999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999887654
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=9.7e-21 Score=113.96 Aligned_cols=81 Identities=26% Similarity=0.493 Sum_probs=76.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCC
Q psy17262 16 LRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVP 94 (172)
Q Consensus 16 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~ 94 (172)
+.+|||+|||+++++++|+++|+.||+|.++.++.++.++.++|+|||+|.+.++|+.|+.. ++..+.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999997 99999999999999876
Q ss_pred CC
Q psy17262 95 RD 96 (172)
Q Consensus 95 ~~ 96 (172)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=117.19 Aligned_cols=87 Identities=21% Similarity=0.460 Sum_probs=80.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
...++++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999999988899999999999999999999976 8899999999999
Q ss_pred ecCCCCCC
Q psy17262 91 RAVPRDEI 98 (172)
Q Consensus 91 ~~~~~~~~ 98 (172)
++.+....
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877553
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=2.5e-21 Score=123.63 Aligned_cols=104 Identities=20% Similarity=0.390 Sum_probs=90.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.+..+++|||+|||+++++++|+++|+.||.|..+.++.+ +.++|+|||+|.+.++|..|+.. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567899999999999999999999999999999999864 45689999999999999999997 9999999999999
Q ss_pred ecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccc
Q psy17262 91 RAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGT 132 (172)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~ 132 (172)
++.+.... .+++. .++++|.++|++||.
T Consensus 81 ~a~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98765433 34555 788999999999975
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=115.72 Aligned_cols=86 Identities=29% Similarity=0.585 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+.++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35779999999999999999999999999999999999988899999999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q psy17262 92 AVPRDEI 98 (172)
Q Consensus 92 ~~~~~~~ 98 (172)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876544
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=2e-20 Score=119.46 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=81.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.....+.++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456779999999999999999999999999999999999988899999999999999999999987 99999999999
Q ss_pred eeecCCCCCC
Q psy17262 89 TKRAVPRDEI 98 (172)
Q Consensus 89 v~~~~~~~~~ 98 (172)
|.++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876543
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=3.1e-20 Score=116.24 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=81.8
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
......+.+.++|||+|||+++++++|+++|+.|| |..++++.++.++.++|||||+|.+.++|+.|++.++..+.|+.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34455567889999999999999999999999997 99999999998899999999999999999999955999999999
Q ss_pred EEeeecCCCCCC
Q psy17262 87 VETKRAVPRDEI 98 (172)
Q Consensus 87 i~v~~~~~~~~~ 98 (172)
|.|.++.+....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dng_A 85 LRVDIAEGRKQD 96 (103)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEecCCCCC
Confidence 999999876543
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=119.89 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=74.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCc--eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCC----ccCC
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE--IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH----NIDG 84 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~----~~~~ 84 (172)
....-.+|||+|||+++|+++|+++|++||. +.+++++.++.|+.++|||||+|.+.++|++|++. ++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456789999999999999999999999995 67999999999999999999999999999999997 554 4899
Q ss_pred eEEEeeecCC
Q psy17262 85 RVVETKRAVP 94 (172)
Q Consensus 85 ~~i~v~~~~~ 94 (172)
+.|.|.++..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999998854
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=118.44 Aligned_cols=89 Identities=27% Similarity=0.499 Sum_probs=81.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+.+..+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44556789999999999999999999999999999999999988899999999999999999999997 99999999999
Q ss_pred eeecCCCCCC
Q psy17262 89 TKRAVPRDEI 98 (172)
Q Consensus 89 v~~~~~~~~~ 98 (172)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999765443
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=117.57 Aligned_cols=90 Identities=36% Similarity=0.643 Sum_probs=81.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
......+.++|||+|||+++++++|+++|+.||+|..++++.++.++.++|||||+|.+.++|..|++. ++..+.|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 344556889999999999999999999999999999999999988899999999999999999999987 8999999999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.+....
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99998776543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=8.5e-21 Score=114.71 Aligned_cols=80 Identities=29% Similarity=0.516 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+.++++|||+|||+++++++|+++|++||+|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999988999999999999999999999987 99999999999987
Q ss_pred c
Q psy17262 92 A 92 (172)
Q Consensus 92 ~ 92 (172)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=1.1e-20 Score=116.80 Aligned_cols=83 Identities=24% Similarity=0.480 Sum_probs=78.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
++++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 468999999999999999999999999999999999988899999999999999999999987 9999999999999998
Q ss_pred CCCC
Q psy17262 94 PRDE 97 (172)
Q Consensus 94 ~~~~ 97 (172)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7643
No 51
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-20 Score=115.77 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=81.0
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
......+....++|||+|||+++++++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|+.|+.. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 5 SSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp SCCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 3445556678899999999999999999999999999999999988533 689999999999999999996 8999999
Q ss_pred eEEEeeecCCCCCCC
Q psy17262 85 RVVETKRAVPRDEIG 99 (172)
Q Consensus 85 ~~i~v~~~~~~~~~~ 99 (172)
+.|.|.++.+.....
T Consensus 83 ~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 83 KEVKVNWATTPSSQK 97 (103)
T ss_dssp EEEEEEECCCTTCCC
T ss_pred CeEEEEECCCCcccc
Confidence 999999998765443
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=117.42 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=81.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhh-cCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCc-cCCeE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQ-WGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN-IDGRV 86 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~-~~~~~ 86 (172)
..++.++++|||+|||+++++++|+++|+. ||.|..+.++.++ ++.++|||||+|.+.++|..|++. ++.. +.|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345567899999999999999999999999 9999999999998 999999999999999999999997 8888 99999
Q ss_pred EEeeecCCCCCCCC
Q psy17262 87 VETKRAVPRDEIGK 100 (172)
Q Consensus 87 i~v~~~~~~~~~~~ 100 (172)
|.|.++.+......
T Consensus 82 l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 82 VRLSVAIPKASRVK 95 (104)
T ss_dssp CCCCBCCCCCSCCC
T ss_pred EEEEEccCCCcCCC
Confidence 99999977655443
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=9.3e-21 Score=123.27 Aligned_cols=90 Identities=24% Similarity=0.456 Sum_probs=82.7
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.+...++.++++|||+|||+++++++|+++|+.||+|..++++.++.++.++|+|||+|.+.++|++|++. ++..+.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667889999999999999999999999999999999999988899999999999999999999997 99999999
Q ss_pred EEEeeecCCCC
Q psy17262 86 VVETKRAVPRD 96 (172)
Q Consensus 86 ~i~v~~~~~~~ 96 (172)
.|.|.++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-20 Score=116.53 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=81.7
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
......+.+.++|||+|||+++++++|+++|+.||.|..+.++.+ ++.++|||||+|.+.++|+.|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 444555678999999999999999999999999999999999987 788999999999999999999997 99999999
Q ss_pred EEEeeecCCCCCC
Q psy17262 86 VVETKRAVPRDEI 98 (172)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (172)
.|.|.++.++...
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 84 PLYVALAQRKEER 96 (103)
T ss_dssp BCEEEECSSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999876544
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=116.70 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=79.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEE-EEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
.++++|||+|||+++++++|+++|+.||.|..+ +++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999999 9999988999999999999999999999997 88999999999999
Q ss_pred cCCCCCC
Q psy17262 92 AVPRDEI 98 (172)
Q Consensus 92 ~~~~~~~ 98 (172)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 56
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.2e-21 Score=118.76 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
.....++|||+|||+++|+++|+++|+.||+|.++.++.++. +.++|+|||+|.+.++|..|+..++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999999999985 8999999999999999999999888999999999987
Q ss_pred cCC
Q psy17262 92 AVP 94 (172)
Q Consensus 92 ~~~ 94 (172)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=118.10 Aligned_cols=90 Identities=27% Similarity=0.445 Sum_probs=82.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
......+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 344556889999999999999999999999999999999999988899999999999999999999987 9999999999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 58
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=1.2e-20 Score=119.55 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=81.4
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
...+....++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|+.. ++..+.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 34444556789999999999999999999999999999999999988999999999999999999999997 99999999
Q ss_pred EEEeeecCCCC
Q psy17262 86 VVETKRAVPRD 96 (172)
Q Consensus 86 ~i~v~~~~~~~ 96 (172)
.|.|.++.++.
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 99999987654
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=115.30 Aligned_cols=85 Identities=25% Similarity=0.464 Sum_probs=78.3
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
.....+.+.++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3444556789999999999999999999999999999999999988899999999999999999999987 889999999
Q ss_pred EEeeec
Q psy17262 87 VETKRA 92 (172)
Q Consensus 87 i~v~~~ 92 (172)
|.|.++
T Consensus 88 l~v~~a 93 (94)
T 2e5h_A 88 IKASIA 93 (94)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999876
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=116.46 Aligned_cols=92 Identities=17% Similarity=0.392 Sum_probs=82.8
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEec-CCCCCccceEEEEECCHHHHHHHHhc--CCCccC
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD-PITKRSRGFGFITYSEAKMVDDAMSN--RPHNID 83 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~ 83 (172)
..........++|||+|||+++++++|+++|+.||.|..+.++.+ +.++.++|+|||+|.+.++|+.|+.. ++..+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 6 SGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 344555678899999999999999999999999999999999988 77889999999999999999999987 689999
Q ss_pred CeEEEeeecCCCCCC
Q psy17262 84 GRVVETKRAVPRDEI 98 (172)
Q Consensus 84 ~~~i~v~~~~~~~~~ 98 (172)
|+.|.|.++.+....
T Consensus 86 g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 86 GRRLVLEWADSEVTV 100 (107)
T ss_dssp SCBCEEEECCCCCCC
T ss_pred CCEEEEEeCCCCCCC
Confidence 999999999876544
No 61
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=115.94 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=78.8
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEEecCCCCCccceEEEEECCHHHHHHHHhc-C
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R 78 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~ 78 (172)
.....+...++|||+|||+++++++|+++|+.||.|.. ++++.++.++.++|+|||+|.+.++|+.|++. +
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 44555678899999999999999999999999999999 99999988999999999999999999999987 9
Q ss_pred CCccCCeEEEeeec
Q psy17262 79 PHNIDGRVVETKRA 92 (172)
Q Consensus 79 ~~~~~~~~i~v~~~ 92 (172)
+..+.|+.|.|.++
T Consensus 85 g~~~~g~~l~V~~A 98 (99)
T 2la6_A 85 GKEFSGNPIKVSFA 98 (99)
T ss_dssp TCBSSSSBCEEEEC
T ss_pred CCEeCCcEEEEEec
Confidence 99999999999876
No 62
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=120.69 Aligned_cols=87 Identities=62% Similarity=1.089 Sum_probs=80.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
++...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+..++..+.|+.|.|.+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999988899999999999
Q ss_pred cCCCCCC
Q psy17262 92 AVPRDEI 98 (172)
Q Consensus 92 ~~~~~~~ 98 (172)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9877554
No 63
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=115.75 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=77.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCC---CCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPI---TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.++++|||+|||+++++++|+++|+.||+|..+.++.++. ++.++|||||+|.+.++|+.|++. ++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5679999999999999999999999999999999998775 558899999999999999999997 899999999999
Q ss_pred eecCCCCCC
Q psy17262 90 KRAVPRDEI 98 (172)
Q Consensus 90 ~~~~~~~~~ 98 (172)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999776543
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-20 Score=114.02 Aligned_cols=91 Identities=24% Similarity=0.498 Sum_probs=80.9
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
...........++|||+|||+++++++|+++|+.||.|..++++.++. .++|+|||+|.+.++|+.|+.. ++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556667889999999999999999999999999999999998763 3899999999999999999997 9999999
Q ss_pred eEEEeeecCCCCCC
Q psy17262 85 RVVETKRAVPRDEI 98 (172)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (172)
+.|.|.++.++...
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 83 RKIEVNNATARVMT 96 (103)
T ss_dssp EECEEEECCSSCCC
T ss_pred EEEEEEEcccCCCC
Confidence 99999999876544
No 65
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.5e-20 Score=117.19 Aligned_cols=89 Identities=35% Similarity=0.617 Sum_probs=80.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i 87 (172)
.........++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|+......+.|+.|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34455678899999999999999999999999999999999999888999999999999999999999993348999999
Q ss_pred EeeecCCCC
Q psy17262 88 ETKRAVPRD 96 (172)
Q Consensus 88 ~v~~~~~~~ 96 (172)
.|.++.+..
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999987653
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=115.79 Aligned_cols=86 Identities=14% Similarity=0.323 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCcee-EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE--
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV-DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV-- 86 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~-- 86 (172)
.....+++|||+|||+++++++|+++|+.||+|. +++++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 999999998999999999999999999999997 889999998
Q ss_pred --EEeeecCCCC
Q psy17262 87 --VETKRAVPRD 96 (172)
Q Consensus 87 --i~v~~~~~~~ 96 (172)
|.|.++.+..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999887653
No 67
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=7e-20 Score=115.00 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC---eEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG---RVV 87 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~---~~i 87 (172)
....+++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|+.|++. ++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 788999999999999999999997 8888888 999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.+....
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 68
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=3.2e-20 Score=116.79 Aligned_cols=90 Identities=27% Similarity=0.436 Sum_probs=81.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc---C
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI---D 83 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~---~ 83 (172)
+.+..+...++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|+.|+.. ++..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3445567889999999999999999999999999999999999988899999999999999999999997 87777 8
Q ss_pred CeEEEeeecCCCCC
Q psy17262 84 GRVVETKRAVPRDE 97 (172)
Q Consensus 84 ~~~i~v~~~~~~~~ 97 (172)
|+.|.|.++.+...
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999977654
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3.5e-21 Score=120.00 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCCCcceEEEcCCCC------CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 12 EPESLRKVFIGGLDY------RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~------~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
+...+++|||+|||+ ++++++|+++|++||.|.+++++.++.|+.++|||||+|.+.++|++|++. ++..+.|
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 345678999999999 999999999999999999999999998899999999999999999999987 9999999
Q ss_pred -eEEEeeecCCC
Q psy17262 85 -RVVETKRAVPR 95 (172)
Q Consensus 85 -~~i~v~~~~~~ 95 (172)
+.|.|.++.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999988654
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=3.9e-21 Score=117.55 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
.+|||+|||+++++++|+++|+.|| .|.+++++.++.++.++|||||+|.+.++|++|++. ++..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 999999999998999999999999999999999987 8899999999999887
Q ss_pred CCCC
Q psy17262 94 PRDE 97 (172)
Q Consensus 94 ~~~~ 97 (172)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-20 Score=115.13 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=79.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC-CCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
+....+.++|||+|||+++++++|+++|+.|| |..+.++.++.+ +.++|||||+|.+.++|+.|+..++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIR 87 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEE
Confidence 34446779999999999999999999999999 999999998877 8899999999999999999994489999999999
Q ss_pred eeecCCCCCC
Q psy17262 89 TKRAVPRDEI 98 (172)
Q Consensus 89 v~~~~~~~~~ 98 (172)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 72
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=118.07 Aligned_cols=96 Identities=20% Similarity=0.385 Sum_probs=82.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
++|||+|||+++++++|+++|+.||+|..+.++.+ ++|+|||+|.+.++|+.|++. ++..+.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999875 789999999999999999997 888999999999999876
Q ss_pred CCCCCCc----cccccceEEEeCCCC
Q psy17262 96 DEIGKPE----ANATVKKMFVGGLKD 117 (172)
Q Consensus 96 ~~~~~~~----~~~~~~~l~v~~l~~ 117 (172)
....... ......++||+||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 5432221 123366899999973
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=114.52 Aligned_cols=86 Identities=26% Similarity=0.428 Sum_probs=76.6
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
..+..+...++|||+|||+++++++|+++|+.||+|.+++++.++ ++.++|+|||+|.+.++|+.|++. ++..+.|+.
T Consensus 8 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 8 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp ----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 344556788999999999999999999999999999999999988 488999999999999999999997 999999999
Q ss_pred EEeeecCC
Q psy17262 87 VETKRAVP 94 (172)
Q Consensus 87 i~v~~~~~ 94 (172)
|.|.++..
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99998753
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=5.6e-20 Score=117.48 Aligned_cols=86 Identities=31% Similarity=0.579 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
+....++|||+|||+++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 899999999999999999999997 8999999999999
Q ss_pred ecCCCCCC
Q psy17262 91 RAVPRDEI 98 (172)
Q Consensus 91 ~~~~~~~~ 98 (172)
++.+....
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99866543
No 75
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=3.6e-20 Score=112.88 Aligned_cols=81 Identities=23% Similarity=0.504 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
..++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+..++..+.|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999998899999999999999999999995499999999999998865
Q ss_pred C
Q psy17262 95 R 95 (172)
Q Consensus 95 ~ 95 (172)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 76
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=119.88 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=80.7
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCce-eEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEI-VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (172)
.+....+...++|||+|||+++++++|+++|+.||.| ..++++.++ ++.++|||||+|.+.++|+.|++.++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 6 SGEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CCCCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3344556778999999999999999999999999999 889999998 99999999999999999999999988999999
Q ss_pred EEEeeecCCCC
Q psy17262 86 VVETKRAVPRD 96 (172)
Q Consensus 86 ~i~v~~~~~~~ 96 (172)
.|.|.++.+..
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999987553
No 77
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-20 Score=114.74 Aligned_cols=86 Identities=17% Similarity=0.341 Sum_probs=77.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeE-EEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD-VVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
.......++|||+|||+++++++|+++|+.||.|.+ +.++.+ .++.++|+|||+|.++++|+.|++.++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEE
Confidence 344567899999999999999999999999999987 888888 589999999999999999999999988999999999
Q ss_pred eeecCCCC
Q psy17262 89 TKRAVPRD 96 (172)
Q Consensus 89 v~~~~~~~ 96 (172)
|.++...+
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99887654
No 78
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-20 Score=116.92 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=81.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCcee--------EEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CC
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--------DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP 79 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~ 79 (172)
...+....++|||+|||+++++++|+++|+.||.|. .++++.++.++.++|+|||+|.+.++|+.|++. ++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344567889999999999999999999999999998 699999988999999999999999999999997 99
Q ss_pred CccCCeEEEeeecCCCCCC
Q psy17262 80 HNIDGRVVETKRAVPRDEI 98 (172)
Q Consensus 80 ~~~~~~~i~v~~~~~~~~~ 98 (172)
..+.|+.|.|.++.+....
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999998876544
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=115.23 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C--CCccCCeE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRV 86 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~~~~~~ 86 (172)
-+++.++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|+.|++. + +..+.|+.
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 356778999999999999999999999999999999999864 69999999999999999995 3 47899999
Q ss_pred EEeeecCCCCCC
Q psy17262 87 VETKRAVPRDEI 98 (172)
Q Consensus 87 i~v~~~~~~~~~ 98 (172)
|.|.++.++...
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999776543
No 80
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-20 Score=120.16 Aligned_cols=88 Identities=24% Similarity=0.470 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.++...++|||+|||+++++++|+++|+.||+|.+++++.++.++.++|+|||+|.+.++|..|++. ++..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456779999999999999999999999999999999999988899999999999999999999997 889999999999
Q ss_pred eecCCCCCC
Q psy17262 90 KRAVPRDEI 98 (172)
Q Consensus 90 ~~~~~~~~~ 98 (172)
.++.+....
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876544
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=4e-20 Score=119.85 Aligned_cols=92 Identities=18% Similarity=0.315 Sum_probs=82.7
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.+.+....++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 34455566789999999999999999999999999999999999988999999999999999999999987 99999999
Q ss_pred EEEeeecCCCCCC
Q psy17262 86 VVETKRAVPRDEI 98 (172)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (172)
.|.|.++.+....
T Consensus 93 ~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 93 PISVDWCFVRGPP 105 (126)
T ss_dssp BCEEEESEESSSC
T ss_pred EEEEEEecCCCCC
Confidence 9999999766543
No 82
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.2e-20 Score=118.99 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=77.6
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
...+..+.++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 334456789999999999999999999999999999999999988899999999999999999999997 8999999999
Q ss_pred Eeeec
Q psy17262 88 ETKRA 92 (172)
Q Consensus 88 ~v~~~ 92 (172)
.|.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 99876
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=1.5e-20 Score=111.06 Aligned_cols=75 Identities=40% Similarity=0.760 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
+|||+|||+++++++|+++|+.||+|.++.++.++.++.++|+|||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999988899999999999999999999998899999999999864
No 84
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=115.91 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=77.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
....+...++|||+|||+++++++|+++|+.||.+ +++++.++ ++.++|+|||+|.+.++|++|++.++..+.++.|.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (102)
T 1wez_A 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVE 85 (102)
T ss_dssp SSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 34556778999999999999999999999999955 99999998 89999999999999999999997788999999999
Q ss_pred eeecCCCC
Q psy17262 89 TKRAVPRD 96 (172)
Q Consensus 89 v~~~~~~~ 96 (172)
|.++.+..
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99887654
No 85
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=123.73 Aligned_cols=81 Identities=17% Similarity=0.373 Sum_probs=75.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
..++|||+|||+++++++|+++|+.|| .|.+++++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999998999999999999999999999999 89999999999998
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 86
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=112.52 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=76.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCC-ccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKR-SRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
..+++|||+|||+++++++|+++|+.||.|..+.++.++.++. ++|+|||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999998886666 899999999999999999997 99999999999999
Q ss_pred cCCCC
Q psy17262 92 AVPRD 96 (172)
Q Consensus 92 ~~~~~ 96 (172)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87653
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=118.14 Aligned_cols=85 Identities=29% Similarity=0.567 Sum_probs=78.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999999988899999999999999999999986 8899999999999
Q ss_pred ecCCCC
Q psy17262 91 RAVPRD 96 (172)
Q Consensus 91 ~~~~~~ 96 (172)
++.+..
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 987654
No 88
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=122.00 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=81.6
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeE--EEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCC--
Q psy17262 6 DDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH-- 80 (172)
Q Consensus 6 ~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~-- 80 (172)
..+.+.....+++|||+|||+++++++|+++|+.||.|.. ++++.++.++.++|||||+|.+. +|..|+.. ++.
T Consensus 13 ~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~ 91 (131)
T 2m2b_A 13 QGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHP 91 (131)
T ss_dssp CCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCC
Confidence 3445555678899999999999999999999999999976 99999999999999999999999 99999998 888
Q ss_pred --ccCCeEEEeeecCCCCC
Q psy17262 81 --NIDGRVVETKRAVPRDE 97 (172)
Q Consensus 81 --~~~~~~i~v~~~~~~~~ 97 (172)
.+.|+.|.|.++.+...
T Consensus 92 ~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 92 PLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp SCCGGGCCCCCEECCCSCC
T ss_pred CccCCCEEEEEEECCCCCC
Confidence 99999999999977643
No 89
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-19 Score=113.58 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=79.7
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
........+++|||+|||+++++++|+++|+.||.|.++.++.++ ++.++|+|||+|.+.++|+.|++. ++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 344455678999999999999999999999999999999999988 688999999999999999999997 999999999
Q ss_pred EEeeecCCCC
Q psy17262 87 VETKRAVPRD 96 (172)
Q Consensus 87 i~v~~~~~~~ 96 (172)
|.|.++....
T Consensus 86 l~v~~a~~~~ 95 (114)
T 2do0_A 86 MHVKMDERAL 95 (114)
T ss_dssp CEEEECSCCC
T ss_pred EEEEEcccCC
Confidence 9999886543
No 90
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=7.8e-20 Score=121.93 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=94.0
Q ss_pred CCCccceEEEEECCHHHHHHHHhc--CCCccCCeEEEeeecCCCCC----------CCCCccccccceEEEeCCCC-CCH
Q psy17262 54 TKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGRVVETKRAVPRDE----------IGKPEANATVKKMFVGGLKD-QEE 120 (172)
Q Consensus 54 ~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~~~i~v~~~~~~~~----------~~~~~~~~~~~~l~v~~l~~-~~~ 120 (172)
....+|+++++|.+.++|++|++. ++..++| .+.+.++..... ..........++|||+|||. +++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 345789999999999999999976 6788899 899887764211 12233455678999999999 999
Q ss_pred HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 121 DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 121 ~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++|+++|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|||.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999865 5889999999999999999999874
No 91
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=1.3e-19 Score=114.22 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+....+.++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|+|||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678999999999999999999999999999999999998 999999999999999999999997 99999999999
Q ss_pred eeecC
Q psy17262 89 TKRAV 93 (172)
Q Consensus 89 v~~~~ 93 (172)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99874
No 92
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=114.03 Aligned_cols=85 Identities=12% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
......++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3446678999999999999999999999999999888888888899999999999999999999977 889999999999
Q ss_pred eecCCC
Q psy17262 90 KRAVPR 95 (172)
Q Consensus 90 ~~~~~~ 95 (172)
.++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 988654
No 93
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.9e-19 Score=110.30 Aligned_cols=84 Identities=14% Similarity=0.317 Sum_probs=76.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
...+.++|||+|||+++++++|+++|+.||.|..+.+..+ ++.++|+|||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999999874 788999999999999999999997 9999999999999
Q ss_pred ecCCCCC
Q psy17262 91 RAVPRDE 97 (172)
Q Consensus 91 ~~~~~~~ 97 (172)
++.+...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9877643
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-19 Score=112.90 Aligned_cols=88 Identities=14% Similarity=0.295 Sum_probs=77.3
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
..........++|||+|||+++++++|+++|+.||.|..+.+.. ++.++|+|||+|.+.++|+.|++. ++..+.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 33445566789999999999999999999999999999999855 455899999999999999999977 89999999
Q ss_pred EEEeeecCCCCC
Q psy17262 86 VVETKRAVPRDE 97 (172)
Q Consensus 86 ~i~v~~~~~~~~ 97 (172)
.|.|.++.+...
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999877643
No 95
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-19 Score=109.95 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=77.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
...+...++|||+|||+++++++|+++|+.| .|..++++.+ .++.++|+|||+|.+.++|+.|+..++..+.|+.|.|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence 3445678999999999999999999999999 9999999998 5899999999999999999999998888999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987664
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=116.12 Aligned_cols=87 Identities=23% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecC-CCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDP-ITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
.........++|||+|||+++++++|+++|+.|| |.++.++.++ .++.++|+|||+|.+.++|..|+..++..+.|+.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 3444557889999999999999999999999999 9999999987 5899999999999999999999955999999999
Q ss_pred EEeeecCCC
Q psy17262 87 VETKRAVPR 95 (172)
Q Consensus 87 i~v~~~~~~ 95 (172)
|.|.++.+.
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998765
No 97
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=115.40 Aligned_cols=89 Identities=10% Similarity=0.165 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C--CCc
Q psy17262 5 YDDSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHN 81 (172)
Q Consensus 5 ~~~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~ 81 (172)
.+........++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|+.|++. + +..
T Consensus 20 ~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp --CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred ccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 33444555678899999999999999999999999999999999864 69999999999999999986 3 578
Q ss_pred cCCeEEEeeecCCCCCCC
Q psy17262 82 IDGRVVETKRAVPRDEIG 99 (172)
Q Consensus 82 ~~~~~i~v~~~~~~~~~~ 99 (172)
+.|+.|.|.++.++....
T Consensus 94 l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp BTTBCCEEEECSSSSCCC
T ss_pred ECCeEEEEEEccCCCCCc
Confidence 999999999998765443
No 98
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=117.50 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=74.6
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
...+..++++|||+|||+.+++++|+ ++|++||+|.++.+.. ++.++|||||+|.+.++|..|+.. ++..+.
T Consensus 22 ~~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 22 TPPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34445678999999999999999876 6999999999988753 677999999999999999999988 999999
Q ss_pred CeEEEeeecCCCC
Q psy17262 84 GRVVETKRAVPRD 96 (172)
Q Consensus 84 ~~~i~v~~~~~~~ 96 (172)
|+.|.|.++....
T Consensus 99 gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNPLVITFSETPQ 111 (127)
T ss_dssp TSCCEEEECCCCC
T ss_pred CCEEEEEEccCcc
Confidence 9999999987654
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=110.93 Aligned_cols=85 Identities=9% Similarity=0.164 Sum_probs=74.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCC
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDG 84 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~ 84 (172)
.......++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|+.|++. ++..+.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 7 GDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33455578899999999999999999999999999999988763 69999999999999999985 4678999
Q ss_pred eEEEeeecCCCCCC
Q psy17262 85 RVVETKRAVPRDEI 98 (172)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (172)
+.|.|.++..+...
T Consensus 81 r~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 81 QPIYIQYSNHKELK 94 (101)
T ss_dssp EECEEEECSCSSCC
T ss_pred cEEEEEEcCcccCc
Confidence 99999999866543
No 100
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=1.9e-20 Score=110.55 Aligned_cols=75 Identities=35% Similarity=0.604 Sum_probs=71.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
+|||+|||+++++++|+++|+.||+|.++.++.++.++.++|+|||+|.++++|+.|++.++..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999999889999999988764
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=111.58 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=70.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCC--ccCCeE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPH--NIDGRV 86 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~--~~~~~~ 86 (172)
.....++++|||+|||+++|+++|+++|++||.|.++.+++ .+|+|||+|.+.++|..|+.. ++. .+.|+.
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 34456889999999999999999999999999999999875 469999999999999999997 544 478999
Q ss_pred EEeeecCCCC
Q psy17262 87 VETKRAVPRD 96 (172)
Q Consensus 87 i~v~~~~~~~ 96 (172)
|.|.++..+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999987653
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-20 Score=113.37 Aligned_cols=81 Identities=20% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+.++++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35779999999999999999999999999999999999988899999999999999999999997 88889999888776
Q ss_pred cC
Q psy17262 92 AV 93 (172)
Q Consensus 92 ~~ 93 (172)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 103
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.7e-19 Score=122.09 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=79.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+....++++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678899999999999999999999999999999999988999999999999999999999997 99999999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++.+...
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999876654
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.7e-19 Score=120.26 Aligned_cols=88 Identities=30% Similarity=0.535 Sum_probs=80.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.......++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+.|.
T Consensus 64 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 64 HMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 33446689999999999999999999999999999999999988999999999999999999999987 88999999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++.+...
T Consensus 144 v~~a~~~~~ 152 (158)
T 2kn4_A 144 VQMARYGRP 152 (158)
T ss_dssp EEEECCSSC
T ss_pred EEECCCCCC
Confidence 999987643
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=4.2e-19 Score=114.72 Aligned_cols=86 Identities=21% Similarity=0.355 Sum_probs=79.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.....+++|||+|||+++++++|+++|+.||.|..+++..++ ++.++|+|||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345778999999999999999999999999999999999998 899999999999999999999997 889999999999
Q ss_pred eecCCCCC
Q psy17262 90 KRAVPRDE 97 (172)
Q Consensus 90 ~~~~~~~~ 97 (172)
.++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99876543
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=113.18 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=74.0
Q ss_pred CCCCCCCCCcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-C--CCcc
Q psy17262 7 DSKCTEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNI 82 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~~ 82 (172)
.+......++++|||+|||+ ++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|..|++. + ...+
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 6 SGQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 34445566889999999999 9999999999999999999999864 48999999999999999986 4 4569
Q ss_pred CCeEEEeeecCCCCCC
Q psy17262 83 DGRVVETKRAVPRDEI 98 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~ 98 (172)
.|+.|.|.++......
T Consensus 80 ~Gr~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 80 FGKPVRVHLSQKYKRI 95 (102)
T ss_dssp TTEECEEEEECCCTTS
T ss_pred CCcEEEEEECCCCCCC
Confidence 9999999999865443
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=118.73 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=76.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
......+.++|||+|||+++++++|+++|+.||.|..++++.++.++.++|+|||+|.+.++|++|++. ++..+.|+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344556789999999999999999999999999999999999988999999999999999999999987 8899999999
Q ss_pred Eeeec
Q psy17262 88 ETKRA 92 (172)
Q Consensus 88 ~v~~~ 92 (172)
.|.++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99864
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-20 Score=110.02 Aligned_cols=76 Identities=45% Similarity=0.890 Sum_probs=71.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
++|||+|||+++++++|+++|++||+|..+.++.++.++.++|+|||+|.+.++|+.|++.....+.|+.+.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999988899999999999999999999999449999999999876
No 109
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=3.1e-19 Score=119.73 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=79.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
...+++|||+|||+++++++|+++|+.||+|..+.++.++.++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35779999999999999999999999999999999999998899999999999999999999997 89999999999999
Q ss_pred cCCCCC
Q psy17262 92 AVPRDE 97 (172)
Q Consensus 92 ~~~~~~ 97 (172)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 110
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=115.71 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=78.1
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCe
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGR 85 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~ 85 (172)
...+....++|||+|||+++|+++|+++|+.||. |..++++.++. +.++|+|||+|.+.++|++|++.++..+.|+
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 10 LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp SSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred cCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 3444567899999999999999999999999999 89999999885 8899999999999999999999988999999
Q ss_pred EEEeeecCCC
Q psy17262 86 VVETKRAVPR 95 (172)
Q Consensus 86 ~i~v~~~~~~ 95 (172)
.|.|.++...
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999988644
No 111
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=117.21 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+..++..+.|+.|.|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 45689999999999999999999999999999999999988999999999999999999999449999999999999886
Q ss_pred CC
Q psy17262 94 PR 95 (172)
Q Consensus 94 ~~ 95 (172)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 112
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=113.01 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEE-ecCCCCCccceEEEEECCHHHHHHHHhc-C--CCccCCeEE
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVM-KDPITKRSRGFGFITYSEAKMVDDAMSN-R--PHNIDGRVV 87 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~-~--~~~~~~~~i 87 (172)
+.+.++|||+|||+++++++|+++|+.||. |..+.++ .++.++.++|||||+|.+.++|+.|+.. + +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999998 7777889999999999999999999997 4 588999999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 113
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=110.08 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
....++|||+|||+++++++|+ ++|++||+|.+++++.++.+ +|||||+|.+.++|+.|++. ++..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3467899999999999999999 99999999999999988754 89999999999999999997 9999999999
Q ss_pred EeeecCCCC
Q psy17262 88 ETKRAVPRD 96 (172)
Q Consensus 88 ~v~~~~~~~ 96 (172)
.|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999987653
No 114
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=6e-20 Score=113.25 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34569999999999999999999999999999898888888899999999999999999999997 99999999999997
Q ss_pred cCC
Q psy17262 92 AVP 94 (172)
Q Consensus 92 ~~~ 94 (172)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 115
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=1e-19 Score=119.29 Aligned_cols=88 Identities=30% Similarity=0.531 Sum_probs=80.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
+.+....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44456788999999999999999999999999999999999888899999999999999999999997 89999999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++.+...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=114.30 Aligned_cols=86 Identities=26% Similarity=0.552 Sum_probs=76.9
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
.........++|||+|||+++++++|+++|+.||.|..+++..++ +.++|+|||+|.+.++|+.|+.. ++..+.|+.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344455678999999999999999999999999999999999875 34899999999999999999997 999999999
Q ss_pred EEeeecCCC
Q psy17262 87 VETKRAVPR 95 (172)
Q Consensus 87 i~v~~~~~~ 95 (172)
|.|.++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998765
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-19 Score=112.63 Aligned_cols=84 Identities=15% Similarity=0.379 Sum_probs=75.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc-------
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI------- 82 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~------- 82 (172)
......++|||+|||+++++++|+++|+.||.|..++++.++ ++.++|||||+|.+.++|+.|++. ++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445677999999999999999999999999999999999998 899999999999999999999997 88888
Q ss_pred -CCeEEEeeecCCC
Q psy17262 83 -DGRVVETKRAVPR 95 (172)
Q Consensus 83 -~~~~i~v~~~~~~ 95 (172)
.++++.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5677888887653
No 118
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=6.7e-20 Score=114.51 Aligned_cols=85 Identities=24% Similarity=0.541 Sum_probs=77.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEee
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~ 90 (172)
.....+++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|+.|+. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 344577999999999999999999999999999999999998 99999999999999999999999 8889999999999
Q ss_pred ecCCCCC
Q psy17262 91 RAVPRDE 97 (172)
Q Consensus 91 ~~~~~~~ 97 (172)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 8876543
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=113.03 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=75.6
Q ss_pred CCCCCCcceEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc
Q psy17262 10 CTEPESLRKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~ 82 (172)
+.+...+++|||+|||+.+ ++++|+++|+.||.|.++.++ +.++.++|+|||+|.+.++|+.|+.. ++..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3344567899999999999 789999999999999999988 34888999999999999999999997 89999
Q ss_pred CCe-EEEeeecCCCC
Q psy17262 83 DGR-VVETKRAVPRD 96 (172)
Q Consensus 83 ~~~-~i~v~~~~~~~ 96 (172)
.|+ .|.|.++....
T Consensus 87 ~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFD 101 (105)
T ss_dssp STTCEEEEECSCCCC
T ss_pred CCCceEEEEEcchHh
Confidence 998 99999887543
No 120
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=5.1e-19 Score=114.27 Aligned_cols=82 Identities=24% Similarity=0.507 Sum_probs=76.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
..++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|+.|++.++..+.|+.|.|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 46899999999999999999999999999999999998899999999999999999999995589999999999999875
Q ss_pred CC
Q psy17262 95 RD 96 (172)
Q Consensus 95 ~~ 96 (172)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=113.38 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=77.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHH---HHHhhcCceeEEEEEecCCCC---CccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQ---AFFEQWGEIVDVVVMKDPITK---RSRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
......++|||+|||+++++++|+ ++|++||+|.++.++.++.++ .++|||||+|.+.++|++|++. ++..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 344567899999999999999999 999999999999999887654 4569999999999999999998 999999
Q ss_pred CeEEEeeecCCCC
Q psy17262 84 GRVVETKRAVPRD 96 (172)
Q Consensus 84 ~~~i~v~~~~~~~ 96 (172)
|+.|.|.++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-18 Score=108.07 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCCe
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGR 85 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~ 85 (172)
......++++|||+|||+++++++|+++|++||.|.++.++.+ +|+|||+|.+.++|..|++. ....+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3445567899999999999999999999999999999998753 69999999999999999986 34569999
Q ss_pred EEEeeecCCCCCC
Q psy17262 86 VVETKRAVPRDEI 98 (172)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (172)
.|.|.++..+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999999876543
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=4.3e-20 Score=112.82 Aligned_cols=79 Identities=30% Similarity=0.678 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPR 95 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~ 95 (172)
++|||+|||+++++++|+++|+.||+|.++.++.++.++.++|+|||+|.+.+ |..|+.. ++..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 9999998 889999999999998765
Q ss_pred C
Q psy17262 96 D 96 (172)
Q Consensus 96 ~ 96 (172)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=105.74 Aligned_cols=79 Identities=20% Similarity=0.544 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.+.+.++|||+|||+++++++|+++|+.||+|..+.+. +|+|||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 35678999999999999999999999999999999987 58999999999999999987 8899999999999
Q ss_pred ecCCCCCC
Q psy17262 91 RAVPRDEI 98 (172)
Q Consensus 91 ~~~~~~~~ 98 (172)
++.++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=2.1e-19 Score=117.52 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=76.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEE
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i 87 (172)
.++...++|||+|||+++|+++|+++|+.||. |..++++.++. +.++|+|||+|.+.++|++|++.++..+.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 34567789999999999999999999999999 89999999985 999999999999999999999988899999999
Q ss_pred EeeecCCC
Q psy17262 88 ETKRAVPR 95 (172)
Q Consensus 88 ~v~~~~~~ 95 (172)
.|.++.+.
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99987543
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-20 Score=114.74 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEE
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVV 87 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i 87 (172)
....++...++|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|+.|++.++..+.|+.|
T Consensus 9 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 9 VEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp CCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 33445567899999999999999999999999999877 56666567889999999999999999999888899999999
Q ss_pred EeeecCCCCC
Q psy17262 88 ETKRAVPRDE 97 (172)
Q Consensus 88 ~v~~~~~~~~ 97 (172)
.|.++.++..
T Consensus 88 ~V~~a~~~~~ 97 (101)
T 1fj7_A 88 KLEKPKGRDG 97 (101)
T ss_dssp EEECCSCCCC
T ss_pred EEEEcCCCCC
Confidence 9999876543
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-19 Score=116.90 Aligned_cols=85 Identities=14% Similarity=0.320 Sum_probs=75.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEee
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~ 90 (172)
......++|||+|||+++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|+.|+..++..+.|+.|.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456789999999999999999999999999988666666668999999999999999999999988899999999999
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=114.48 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=74.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCce----eEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEI----VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
.....++++|||+|||+++++++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|+.|+.. ++..+.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444577999999999999999999999999998 444444 778999999999999999999997 8999999
Q ss_pred eEEEeeecCCCCCC
Q psy17262 85 RVVETKRAVPRDEI 98 (172)
Q Consensus 85 ~~i~v~~~~~~~~~ 98 (172)
+.|.|.++.+....
T Consensus 95 ~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 95 KILVIEFGKNKKQR 108 (115)
T ss_dssp CBCEEEECCCCSCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999999876544
No 129
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=111.64 Aligned_cols=79 Identities=19% Similarity=0.301 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
...++|||+|||+++++++|+++|+.| .|.++.++.++ +++++|+|||+|.+.++|++|++.++..+.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456799999999999999999999999 88999999988 5899999999999999999999779999999999998775
Q ss_pred C
Q psy17262 94 P 94 (172)
Q Consensus 94 ~ 94 (172)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=113.75 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=77.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCc---eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE---IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
..+....++|||+|||+++|+++|+++|+.||. |..++++.++. +.++|+|||+|.+.++|+.|+..++..+.|+.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345567899999999999999999999999998 89999999885 89999999999999999999998888999999
Q ss_pred EEeeecCCC
Q psy17262 87 VETKRAVPR 95 (172)
Q Consensus 87 i~v~~~~~~ 95 (172)
|.|.++.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999987654
No 131
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=108.32 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=74.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
....+...++|||+|||+++++++|+++|+.||.| +++.+ .++.++|+|||+|.+.++|+.|+.. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34456788999999999999999999999999987 45555 4788999999999999999999996 8899999999
Q ss_pred EeeecCCCCC
Q psy17262 88 ETKRAVPRDE 97 (172)
Q Consensus 88 ~v~~~~~~~~ 97 (172)
.|.++.+...
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987644
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=106.96 Aligned_cols=72 Identities=14% Similarity=0.293 Sum_probs=65.9
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe-EE
Q psy17262 16 LRKVFIGGLDYRT------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR-VV 87 (172)
Q Consensus 16 ~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~-~i 87 (172)
+++|||+|||+.+ ++++|+++|++||+|.++.++ +.++.++|+|||+|.+.++|+.|+.. ++..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 34888999999999999999999998 89999998 77
Q ss_pred Ee
Q psy17262 88 ET 89 (172)
Q Consensus 88 ~v 89 (172)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=9.5e-19 Score=104.54 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
-.+.-|+|+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|..|++. ++..+.|++|.|..+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4578899999999999999999999999999999865 689999999999999999999 999999999999977
Q ss_pred C
Q psy17262 93 V 93 (172)
Q Consensus 93 ~ 93 (172)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=108.60 Aligned_cols=65 Identities=23% Similarity=0.446 Sum_probs=62.1
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+|||+|||. +++++|+++|+.||.|..+++++++.++.++|||||+|.+.++|.+|++.|||.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 45899999999 999999999999999999999999999999999999999999999999999874
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=107.51 Aligned_cols=89 Identities=26% Similarity=0.410 Sum_probs=78.2
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
......+.+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|+.|+.. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34445567889999999999999999999999774 677888887899999999999999999999997 99999999
Q ss_pred EEEeeecCCCCCC
Q psy17262 86 VVETKRAVPRDEI 98 (172)
Q Consensus 86 ~i~v~~~~~~~~~ 98 (172)
.|.|.++.++...
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 83 KVTLDWAKPKGEG 95 (102)
T ss_dssp ECEEEECCCCCSS
T ss_pred EEEEEEecCCCCC
Confidence 9999999877554
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=114.64 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCce----eEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEI----VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
...++|||+|||+++|+++|+++|+.||.| ..+.++.+. +++++|+|||+|.+.++|+.|++.++..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 467899999999999999999999999975 689999986 899999999999999999999999888999999999
Q ss_pred eecCCC
Q psy17262 90 KRAVPR 95 (172)
Q Consensus 90 ~~~~~~ 95 (172)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 877543
No 137
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.4e-18 Score=120.28 Aligned_cols=89 Identities=28% Similarity=0.636 Sum_probs=76.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKR 91 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~ 91 (172)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..++..+.|+.|.|.+
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEe
Confidence 34566899999999999999999999999999999999998889999999999999999999999888999999999999
Q ss_pred cCCCCCCCC
Q psy17262 92 AVPRDEIGK 100 (172)
Q Consensus 92 ~~~~~~~~~ 100 (172)
+.++.....
T Consensus 180 a~~k~~~~~ 188 (196)
T 1l3k_A 180 ALSKQEMAS 188 (196)
T ss_dssp CC-------
T ss_pred cCChhHhcc
Confidence 988765543
No 138
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=3.9e-19 Score=114.63 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=74.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCcee--EEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIV--DVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
..+...++|||+|||+++|+++|+++|+.| .|. .++++.++. +.++|+|||+|.++++|++|++.++..+.|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344667899999999999999999999999 566 899999885 8999999999999999999999977999999999
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|.++.+.
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 139
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=105.66 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=72.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC--CeEE
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID--GRVV 87 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~--~~~i 87 (172)
..+.++++|||+|||+++++++|+++|++||.|.++.+... +|+|||+|.+.++|+.|++. ++..+. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34567799999999999999999999999999999988753 68999999999999999997 889999 9999
Q ss_pred EeeecCCCC
Q psy17262 88 ETKRAVPRD 96 (172)
Q Consensus 88 ~v~~~~~~~ 96 (172)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 140
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=106.64 Aligned_cols=85 Identities=22% Similarity=0.424 Sum_probs=75.3
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 7 DSKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 7 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.+......+.++|||+|||+++++++|+++|+.||+|..+++..+ +|+|||+|.+.++|+.|++. ++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 334455577899999999999999999999999999999998853 69999999999999999988 99999999
Q ss_pred EEEeeecCCCCC
Q psy17262 86 VVETKRAVPRDE 97 (172)
Q Consensus 86 ~i~v~~~~~~~~ 97 (172)
.|.|.++.+...
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpj_A 80 QLRVRFACHSAS 91 (99)
T ss_dssp CCEEEESSCCSC
T ss_pred eEEEEEcCCCCC
Confidence 999999977643
No 141
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-18 Score=104.28 Aligned_cols=81 Identities=17% Similarity=0.386 Sum_probs=73.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
...+...++|||+|||+++++++|+++|+.||.|..+.+.. ++|||+|.+.++|+.|+.. ++..+.|+.|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 44567889999999999999999999999999999999873 4999999999999999987 99999999999
Q ss_pred eeecCCCCCC
Q psy17262 89 TKRAVPRDEI 98 (172)
Q Consensus 89 v~~~~~~~~~ 98 (172)
|.++.++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 142
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-18 Score=104.29 Aligned_cols=79 Identities=16% Similarity=0.424 Sum_probs=71.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
..+...++|||+|||+++++++|+++|+.||.|..+++.. ++|||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4456789999999999999999999999999999999873 5999999999999999997 999999999999
Q ss_pred eecCCCCC
Q psy17262 90 KRAVPRDE 97 (172)
Q Consensus 90 ~~~~~~~~ 97 (172)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99977643
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=108.10 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=73.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.+...++|||+|||+++++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|..|+.. ++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999999875 68999999999999999987 9999999999999
Q ss_pred ecCCCCCC
Q psy17262 91 RAVPRDEI 98 (172)
Q Consensus 91 ~~~~~~~~ 98 (172)
++.+....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876544
No 144
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=106.57 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.....+++|||+|||+++++++|+++|+.||.|. +.++.. .++|||||+|.+.++|+.|++. ++..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445689999999999999999999999999986 666643 4789999999999999999988 999999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987653
No 145
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.3e-18 Score=106.28 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC----
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG---- 84 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~---- 84 (172)
+......++|||+|||+++++++|+++|+.||+|..+.++.+ |+|||+|.+.++|+.|++. ++..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 334467899999999999999999999999999999999875 8999999999999999997 8889999
Q ss_pred -eEEEeeecCCCCC
Q psy17262 85 -RVVETKRAVPRDE 97 (172)
Q Consensus 85 -~~i~v~~~~~~~~ 97 (172)
+.|.|.++.+...
T Consensus 82 ~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEEESSCCSC
T ss_pred ceEEEEEeCCCCCC
Confidence 9999999987644
No 146
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=5.5e-19 Score=109.32 Aligned_cols=82 Identities=20% Similarity=0.445 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQ----AFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
+..++++|||+|||+++++++|+ ++|+.||.|..+.+.. ++.++|+|||+|.+.++|..|+.. ++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999 9999999999998873 566889999999999999999997 999999999
Q ss_pred EEeeecCCCC
Q psy17262 87 VETKRAVPRD 96 (172)
Q Consensus 87 i~v~~~~~~~ 96 (172)
|.|.++.+..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 147
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=108.94 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=63.9
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4567999999999 999999999999999999999999999999999999999999999999999974
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=5.8e-18 Score=105.85 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=73.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.....++++|||+|||+++++++|+++|+.||.|..+.++ ++||||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3344678999999999999999999999999999999886 46999999999999999997 88999999999
Q ss_pred eeecCCCCCCC
Q psy17262 89 TKRAVPRDEIG 99 (172)
Q Consensus 89 v~~~~~~~~~~ 99 (172)
|.++.+.....
T Consensus 77 v~~a~~~~~~~ 87 (103)
T 2dgu_A 77 IVFAKPPDQKR 87 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEcCCCcccc
Confidence 99998765543
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=3.8e-18 Score=105.57 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCCCCCCCcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 8 SKCTEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
.......++++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|+.|+.. ++..+.|+
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 14 LVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp -----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred cccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3344556889999999998 99999999999999999999883 68999999999999999997 89999999
Q ss_pred EEEeeecCCC
Q psy17262 86 VVETKRAVPR 95 (172)
Q Consensus 86 ~i~v~~~~~~ 95 (172)
.|.|.++.+.
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999988654
No 150
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1e-18 Score=110.39 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=70.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.+...++|||+|||+++++++|+++|+.|| +|..+.+.. +.++|+|||+|.+.++|+.|++. ++..+.|+.|.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899988753 34889999999999999999987 899999999999
Q ss_pred eecCCC
Q psy17262 90 KRAVPR 95 (172)
Q Consensus 90 ~~~~~~ 95 (172)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 988644
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=5e-18 Score=107.39 Aligned_cols=77 Identities=19% Similarity=0.441 Sum_probs=69.9
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
....+++|||+|||++ +++++|+++|+.||.|..+.+ ++|||||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999988 468999999999999999977 999999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 152
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.3e-18 Score=107.32 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+..+++|||+|||.++++++|+++|+.||.|.++++.. ++|||||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 45578999999999999999999999999999999873 579999999999999999988 99999999999998
Q ss_pred cCC
Q psy17262 92 AVP 94 (172)
Q Consensus 92 ~~~ 94 (172)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 153
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=108.02 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=70.7
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc---CCCccCCeEEE
Q psy17262 13 PESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN---RPHNIDGRVVE 88 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~---~~~~~~~~~i~ 88 (172)
..++++|||+|||++ +++++|+++|++||.|.++.++. ++|+|||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 567899999999998 99999999999999999999974 469999999999999999986 45679999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876544
No 154
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=1.4e-18 Score=123.38 Aligned_cols=81 Identities=19% Similarity=0.344 Sum_probs=75.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcC--ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWG--EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
..++|||+|||+++|+++|+++|+.|| .|.+++|+.++.++.++|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999998999999999999999999999997 88999999999998
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8644
No 155
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=102.50 Aligned_cols=79 Identities=23% Similarity=0.461 Sum_probs=71.0
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccCCe
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNIDGR 85 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~~~ 85 (172)
..+.++...++|||+|||+++++++|+++|++||.|..+.+.. ++|+|||+|.+.++|+.|+.. ++..+.|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 3445557789999999999999999999999999999999986 469999999999999999995 77899999
Q ss_pred EEEeeec
Q psy17262 86 VVETKRA 92 (172)
Q Consensus 86 ~i~v~~~ 92 (172)
.|.|.++
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999886
No 156
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-17 Score=103.41 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=72.2
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhc--CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQW--GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
.......++++|||+|||+++++++|+++|+.| |.|..+.+. +|||||+|.+.++|+.|+.. ++..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 334445678999999999999999999999999 889888764 57999999999999999997 8999999
Q ss_pred eEEEeeecCCCCC
Q psy17262 85 RVVETKRAVPRDE 97 (172)
Q Consensus 85 ~~i~v~~~~~~~~ 97 (172)
+.|.|.++.+...
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 79 SPIEVTLAKPVDK 91 (99)
T ss_dssp EEEEEECCCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987653
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=4.1e-19 Score=116.51 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=74.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEee
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~ 90 (172)
..+...++|||+|||+++|+++|+++|+.|| +.++.++.++ ++.++|+|||+|.+.++|+.|++.++..+.|+.|.|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3446678999999999999999999999999 6799999988 4899999999999999999999668899999999999
Q ss_pred ecCCCCC
Q psy17262 91 RAVPRDE 97 (172)
Q Consensus 91 ~~~~~~~ 97 (172)
.+.+.+.
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 8876543
No 158
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=4.1e-18 Score=107.44 Aligned_cols=78 Identities=17% Similarity=0.362 Sum_probs=70.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
.....+++|||+|||+++++++|+++|+.||.|..+.+. +|+|||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999999999987 58999999999999999997 999999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987654
No 159
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=107.11 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=72.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
......+.++|||+|||+++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|+.|+.. ++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 33445678999999999999999999999999988766 23778999999999999999999997 8899999999
Q ss_pred EeeecCCCC
Q psy17262 88 ETKRAVPRD 96 (172)
Q Consensus 88 ~v~~~~~~~ 96 (172)
.|.++.++.
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999987654
No 160
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=107.40 Aligned_cols=69 Identities=13% Similarity=0.334 Sum_probs=63.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccc--eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGT--IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......+|||+|||. +|+++|+++|++||. +..+++++++.++.++|||||+|.+.++|++|++.+|+.
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 345567999999999 999999999999995 678999999999999999999999999999999998874
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=3.7e-18 Score=116.66 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=78.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.+..+++|||+|||+++++++|+++|+.||+|..+.++.++ ++.++|+|||+|.+.++|+.|++. ++..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44667899999999999999999999999999999999998 899999999999999999999997 8899999999999
Q ss_pred ecCCCC
Q psy17262 91 RAVPRD 96 (172)
Q Consensus 91 ~~~~~~ 96 (172)
++....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 987543
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-17 Score=112.64 Aligned_cols=83 Identities=25% Similarity=0.503 Sum_probs=78.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
....+.++|+|+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|..|+.. ++..+.|+.|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 4456788999999999999999999999999999999999988999999999999999999999997 999999999999
Q ss_pred eecC
Q psy17262 90 KRAV 93 (172)
Q Consensus 90 ~~~~ 93 (172)
.++.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9875
No 163
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=5.5e-18 Score=112.93 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=74.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 10 CTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 10 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.......++|||+|||+++++++|+++|+.||.|.+++++.+ ++|||||+|.+.++|..|+.. ++..+.|+.|.
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999875 689999999999999999997 89999999999
Q ss_pred eeecCCC
Q psy17262 89 TKRAVPR 95 (172)
Q Consensus 89 v~~~~~~ 95 (172)
|.++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998765
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=3.8e-18 Score=103.89 Aligned_cols=80 Identities=34% Similarity=0.515 Sum_probs=63.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEee
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETK 90 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~ 90 (172)
..+.+..+|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|+++.. ....+.|+.|.|.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34567899999999999999999999999999999998763 78999999999999995432 3344679999999
Q ss_pred ecCCCC
Q psy17262 91 RAVPRD 96 (172)
Q Consensus 91 ~~~~~~ 96 (172)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 987654
No 165
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-17 Score=101.11 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=69.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeec
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRA 92 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~ 92 (172)
....++|||+|||+++++++|+++|+.||.|.++ +.++.++. ||||+|.+.++|+.|++.++..+.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 4567899999999999999999999999999987 55544554 999999999999999998889999999999988
Q ss_pred CCCCC
Q psy17262 93 VPRDE 97 (172)
Q Consensus 93 ~~~~~ 97 (172)
.+...
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 65543
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=103.66 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEE-EEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV-VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
....+++|||+|||+++++++|+++|+.||.|..+ .++.++.+ |.|||+|.+.++|+.|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567999999999999999999999999999999 47776533 3499999999999999997 999999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 167
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=106.32 Aligned_cols=64 Identities=27% Similarity=0.464 Sum_probs=60.0
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+++|||+|||. +++++|+++|+.|| .|..+++++++.++.++|||||+|.+.++|++|++.+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 36899999999 99999999999999 899999999999999999999999999999999987643
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-20 Score=117.00 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeE--------EEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVD--------VVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~ 82 (172)
+..++++|||+|||+++++++|+++|+.||.|.. +.++.++.++.++|||||+|.+.++|+.|+.. ++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457899999999999999999999999999998 89999887899999999999999999999997 88999
Q ss_pred CCeEEEeeecCCCCCC
Q psy17262 83 DGRVVETKRAVPRDEI 98 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~ 98 (172)
.|+.|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999998876543
No 169
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.7e-18 Score=104.95 Aligned_cols=79 Identities=22% Similarity=0.407 Sum_probs=69.5
Q ss_pred CCCCCcceEEEcCCCC-CCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 11 TEPESLRKVFIGGLDY-RTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
.+..++++|||+|||+ ++++++|+++|+.||.|..+.+. +|+|||+|.+.++|+.|++. ++..+.|+.|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3456789999999998 99999999999999999999884 68999999999999999997 89999999999
Q ss_pred eeecCCCCC
Q psy17262 89 TKRAVPRDE 97 (172)
Q Consensus 89 v~~~~~~~~ 97 (172)
|.++.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999876543
No 170
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=103.63 Aligned_cols=80 Identities=19% Similarity=0.429 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCc-eeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CC-CccCCeEEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGE-IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RP-HNIDGRVVE 88 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~-~~~~~~~i~ 88 (172)
.+...++|||+|||+++++++|+++|+.||. +..+.+. ++|||||+|.+.++|+.|++. ++ ..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3457799999999999999999999999999 6665553 468999999999999999997 88 899999999
Q ss_pred eeecCCCCCC
Q psy17262 89 TKRAVPRDEI 98 (172)
Q Consensus 89 v~~~~~~~~~ 98 (172)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 171
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=3.4e-18 Score=111.99 Aligned_cols=106 Identities=20% Similarity=0.246 Sum_probs=66.1
Q ss_pred ceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEE
Q psy17262 59 GFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV 136 (172)
Q Consensus 59 g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~ 136 (172)
-++|.+|.+...+..|++. ++....|+. ...+.. .+......++|||+|||. +++++|+++|+.||.|..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~------~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v 77 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR------PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDV 77 (135)
T ss_dssp -------------------------------CCSCC------SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCC------CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE
Confidence 3678888888888888887 444333332 122111 223445678999999999 9999999999999999999
Q ss_pred EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 137 NMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 137 ~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.++.+..++.++|+|||+|.+.++|++|+..||+.
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 99999888999999999999999999999998874
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=5.2e-18 Score=114.60 Aligned_cols=82 Identities=40% Similarity=0.735 Sum_probs=77.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|++.++..+.|+.|.|.++.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 34678999999999999999999999999999999999888999999999999999999999988889999999999987
Q ss_pred CC
Q psy17262 94 PR 95 (172)
Q Consensus 94 ~~ 95 (172)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=2.3e-17 Score=111.96 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+...++|||+|||+++++++|+++|++||+|..+.++.++.++.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34579999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred c
Q psy17262 92 A 92 (172)
Q Consensus 92 ~ 92 (172)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=106.12 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
....++|||+|||+++++++|+++|++||.|..+.++. ++|+|||+|.+.++|+.|+.. ++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998864 568999999999999999998 99999999999999
Q ss_pred cCCC
Q psy17262 92 AVPR 95 (172)
Q Consensus 92 ~~~~ 95 (172)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8654
No 175
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=110.61 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEE--------EEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDV--------VVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI 82 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~--------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~ 82 (172)
...++++|||+|||+++++++|+++|+.||.|..+ .+.. ++.++|||||+|.+.++|..|+.. ++..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35678999999999999999999999999988763 3332 788999999999999999999997 99999
Q ss_pred CCeEEEeeecCCCCC
Q psy17262 83 DGRVVETKRAVPRDE 97 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~ 97 (172)
.|+.|.|.++.+...
T Consensus 118 ~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 FGKPMVVQFARSARP 132 (143)
T ss_dssp TTEECEEEECCCSCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999976543
No 176
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-16 Score=98.81 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 9 KCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
......+.++|||+|| ++++++|+++|+.||+|..+.+. .++|+|||+|.+.++|+.|+.. ++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3444567899999996 99999999999999999999984 3679999999999999999987 8899999999
Q ss_pred EeeecCCCCCC
Q psy17262 88 ETKRAVPRDEI 98 (172)
Q Consensus 88 ~v~~~~~~~~~ 98 (172)
.|.++.+....
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999776543
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=4.1e-17 Score=114.53 Aligned_cols=85 Identities=24% Similarity=0.571 Sum_probs=79.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
...++|||+|||.++++++|+++|+.||.|..++++.++.++.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred CCCCCC
Q psy17262 93 VPRDEI 98 (172)
Q Consensus 93 ~~~~~~ 98 (172)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876443
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=102.07 Aligned_cols=79 Identities=27% Similarity=0.515 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecC
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAV 93 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~ 93 (172)
..+++|||+|||+++++++|+++|+.||+|.+++++.+ ++|||||+|.+.++|++++.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999998753 789999999999999876443 455689999999987
Q ss_pred CCCCC
Q psy17262 94 PRDEI 98 (172)
Q Consensus 94 ~~~~~ 98 (172)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 179
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=2.3e-17 Score=99.46 Aligned_cols=68 Identities=29% Similarity=0.515 Sum_probs=63.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|.+|++.|||.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 34568999999999 999999999999999999999999889999999999999999999999999874
No 180
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=4.6e-17 Score=112.81 Aligned_cols=84 Identities=25% Similarity=0.499 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
+...++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+.. ++..+.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36779999999999999999999999999999999999988999999999999999999999997 99999999999999
Q ss_pred cCCCC
Q psy17262 92 AVPRD 96 (172)
Q Consensus 92 ~~~~~ 96 (172)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97764
No 181
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=102.01 Aligned_cols=69 Identities=26% Similarity=0.515 Sum_probs=64.6
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhccccee-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE-SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|. .+.++.++.++.++|||||+|.+.++|++|++.||+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 345678999999999 99999999999999999 9999999989999999999999999999999999874
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=3.1e-17 Score=113.59 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=74.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVP 94 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~ 94 (172)
..++|||+|||+++++++|+++|+.||+|..+.++.+. ++.++|+|||+|.+.++|+.|++..+..+.|+.|.|.+...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999987 68899999999999999999999866799999999998765
Q ss_pred C
Q psy17262 95 R 95 (172)
Q Consensus 95 ~ 95 (172)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 183
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.3e-17 Score=99.88 Aligned_cols=70 Identities=31% Similarity=0.411 Sum_probs=65.0
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+.++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..||+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3456678999999999 999999999999999999999999988999999999999999999999999873
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=106.03 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC---CCccceEEEEECCHHHHHHHHhcCCCccCCeEEEe
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT---KRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVET 89 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v 89 (172)
...+++|||+|||+++++++|+++|++||+|. +.++.+..+ +.++|||||+|.+.++|++|++.. ..++|+.+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 45679999999999999999999999999998 877777666 689999999999999999999874 3467777766
Q ss_pred eec
Q psy17262 90 KRA 92 (172)
Q Consensus 90 ~~~ 92 (172)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 185
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=4.4e-17 Score=98.64 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=62.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.||+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 3457899999999 999999999999999999999999889999999999999999999999999874
No 186
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=9.2e-17 Score=107.33 Aligned_cols=80 Identities=13% Similarity=0.262 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEEEe
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVET 89 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i~v 89 (172)
+....+|||+||++.+|+++|+++|++||.|.++.+.... ++|+|||+|.+.++|+.|++. ++..+.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4455678999999999999999999999999999987532 578999999999999999998 8999966 99999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=105.70 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=69.2
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECC----HHH----HHHHHh--c-CCCc
Q psy17262 17 RKVFIGGL----DYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE----AKM----VDDAMS--N-RPHN 81 (172)
Q Consensus 17 ~~v~v~nl----p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~-~~~~ 81 (172)
..|||+|| |+.+++.+|+++|+.||+|.++.++.++.|+.++|+|||+|.+ ++. |..|+. . ++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788887 5 8899
Q ss_pred cCCeEEEeeecC
Q psy17262 82 IDGRVVETKRAV 93 (172)
Q Consensus 82 ~~~~~i~v~~~~ 93 (172)
+.|+.|.|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998654
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=3.1e-17 Score=99.60 Aligned_cols=76 Identities=9% Similarity=0.203 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeec
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRA 92 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~ 92 (172)
..+++|||+|||+++++++|+++|++| .|.++++. .++|+|||+|.++++|+.|++. ++..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 4789999999999999999997 999999999999998
Q ss_pred CCCC
Q psy17262 93 VPRD 96 (172)
Q Consensus 93 ~~~~ 96 (172)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 189
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=3.9e-17 Score=100.75 Aligned_cols=66 Identities=26% Similarity=0.497 Sum_probs=62.4
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..+||.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 357999999999 999999999999999999999999888999999999999999999999999874
No 190
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=5.2e-17 Score=97.46 Aligned_cols=64 Identities=25% Similarity=0.469 Sum_probs=61.2
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+..|||.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 5799999999 999999999999999999999999889999999999999999999999999874
No 191
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=100.37 Aligned_cols=66 Identities=21% Similarity=0.475 Sum_probs=62.4
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.+.++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 4567999999999 99999999999999999999999988999999999999999999999998876
No 192
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=100.77 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=63.6
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 45568999999999 999999999999999999999999888999999999999999999999999873
No 193
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7e-17 Score=99.37 Aligned_cols=67 Identities=28% Similarity=0.552 Sum_probs=63.2
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..||+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3567999999999 999999999999999999999999889999999999999999999999999874
No 194
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=1.5e-17 Score=101.43 Aligned_cols=64 Identities=20% Similarity=0.407 Sum_probs=58.9
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhccc--ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|||+|||. +++++|+++|+.|| .|..+.++.++.++.++|||||+|.+.++|.+|++.|||.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4799999999 99999999999999 9999999999999999999999999999999999999874
No 195
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-17 Score=101.57 Aligned_cols=71 Identities=34% Similarity=0.575 Sum_probs=65.5
Q ss_pred CccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 101 PEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 101 ~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.+||.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 34456678999999999 999999999999999999999999888999999999999999999999999874
No 196
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-17 Score=100.89 Aligned_cols=69 Identities=20% Similarity=0.511 Sum_probs=64.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 345567899999999 999999999999999999999999999999999999999999999999999874
No 197
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=6e-17 Score=124.77 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeee
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKR 91 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~ 91 (172)
..+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|..||.. ++..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35668999999999999999999999999999999999988999999999999999999999987 99999999999999
Q ss_pred cCCCC
Q psy17262 92 AVPRD 96 (172)
Q Consensus 92 ~~~~~ 96 (172)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 87654
No 198
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=5.5e-17 Score=98.20 Aligned_cols=73 Identities=22% Similarity=0.515 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhc----C-------ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCc
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQW----G-------EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (172)
..++++|||+|||+++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|+.|+..++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4578999999999999999999999999 8 8999988753 699999999999999999449999
Q ss_pred cCCeEEEeee
Q psy17262 82 IDGRVVETKR 91 (172)
Q Consensus 82 ~~~~~i~v~~ 91 (172)
+.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 199
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.4e-17 Score=99.17 Aligned_cols=66 Identities=36% Similarity=0.691 Sum_probs=61.5
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 345678999999999 999999999999999999999999989999999999999999999999773
No 200
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=1.3e-16 Score=99.96 Aligned_cols=68 Identities=25% Similarity=0.501 Sum_probs=63.0
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 345678999999999 9999999999999999999999987 6899999999999999999999999875
No 201
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=100.77 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=64.8
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3445678999999999 999999999999999999999999888999999999999999999999998874
No 202
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=5.3e-17 Score=101.92 Aligned_cols=69 Identities=23% Similarity=0.494 Sum_probs=64.4
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 345668999999999 999999999999999999999999889999999999999999999999999874
No 203
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.6e-17 Score=99.74 Aligned_cols=68 Identities=38% Similarity=0.712 Sum_probs=62.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++ +|+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 345678999999999 9999999999999999999999998889999999999999999999998 7763
No 204
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=101.36 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=59.9
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+.. +.++|+|||+|.+.++|.+|+. +|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~ 73 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG 73 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC
Confidence 34567999999999 99999999999999999999999887 8999999999999999999998 654
No 205
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=99.13 Aligned_cols=69 Identities=26% Similarity=0.425 Sum_probs=64.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|++.||+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 345678999999999 999999999999999999999999888999999999999999999999999873
No 206
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=8.2e-17 Score=101.72 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=64.7
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..|||.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 3445668999999999 999999999999999999999999889999999999999999999999999874
No 207
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=99.99 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=63.4
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhc-ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQ-FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+. ||.|..+.++.+. ++.++|||||+|.+.++|.+|+..+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC
Confidence 445678999999999 999999999999 9999999999998 8999999999999999999999999874
No 208
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=98.72 Aligned_cols=68 Identities=25% Similarity=0.498 Sum_probs=62.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..||+.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 445678999999999 9999999999999999999999988 8899999999999999999999998863
No 209
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=98.89 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=64.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+..+|||+|||. +++++|+++|+.||.|.. +.++.+..++.++|+|||+|.+.++|++|++.|||.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345568999999999 999999999999999999 999999889999999999999999999999999874
No 210
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.3e-16 Score=107.77 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCC--eEEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG--RVVE 88 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~--~~i~ 88 (172)
.....++|+|+|||+++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|..|+.. ++..+.| +.|.
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 345678999999999999999999999999999999999988899999999999999999999997 8899987 8898
Q ss_pred eeec
Q psy17262 89 TKRA 92 (172)
Q Consensus 89 v~~~ 92 (172)
|.++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8764
No 211
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=101.41 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=64.5
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|++|+..||+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC
Confidence 445678999999999 999999999999999999999999988999999999999999999999999874
No 212
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=1e-16 Score=102.09 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=64.7
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 3445668999999999 999999999999999999999999888999999999999999999999999874
No 213
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=1.5e-16 Score=101.32 Aligned_cols=70 Identities=21% Similarity=0.447 Sum_probs=64.9
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.||+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3455678999999999 999999999999999999999999889999999999999999999999999874
No 214
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=3.4e-18 Score=131.70 Aligned_cols=68 Identities=28% Similarity=0.493 Sum_probs=63.9
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|.++|+.||.|..+.|+.+..++.++|||||+|.+.++|.+||..|||.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 34567999999999 999999999999999999999999889999999999999999999999999974
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=100.48 Aligned_cols=67 Identities=27% Similarity=0.422 Sum_probs=63.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 445678999999999 9999999999999999999999999899999999999999999999999997
No 216
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.5e-17 Score=100.26 Aligned_cols=69 Identities=28% Similarity=0.479 Sum_probs=64.5
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 455678999999999 999999999999999999999999889999999999999999999999999874
No 217
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=7.7e-17 Score=109.48 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=72.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC---CeEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID---GRVV 87 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~---~~~i 87 (172)
.....++|||+|||+++++++|+++|+.||.|..+.++.++ ++.++|+|||+|.+.++|.+|++. ++..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34578899999999999999999999999999999999987 688999999999999999999988 777665 3899
Q ss_pred Eeeec
Q psy17262 88 ETKRA 92 (172)
Q Consensus 88 ~v~~~ 92 (172)
.|.++
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99876
No 218
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-17 Score=100.02 Aligned_cols=69 Identities=33% Similarity=0.584 Sum_probs=64.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.||+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 345668999999999 999999999999999999999999888999999999999999999999999874
No 219
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=102.37 Aligned_cols=69 Identities=33% Similarity=0.661 Sum_probs=64.5
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|+..+|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 3456678999999999 99999999999999999999999988999999999999999999999999886
No 220
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=7.5e-17 Score=102.73 Aligned_cols=63 Identities=24% Similarity=0.510 Sum_probs=58.3
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+|||+|||. +++++|+++|+.||.|..++++.+. +.++|||||+|.+.++|++|++.||+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC
Confidence 45799999999 9999999999999999999999885 457999999999999999999999874
No 221
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=1.3e-16 Score=103.54 Aligned_cols=70 Identities=31% Similarity=0.411 Sum_probs=65.1
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+.++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..||+.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456678999999999 999999999999999999999999889999999999999999999999999874
No 222
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=1.1e-16 Score=108.25 Aligned_cols=68 Identities=21% Similarity=0.431 Sum_probs=63.1
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34567899999999 999999999999999999999999889999999999999999999999999874
No 223
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=101.93 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=67.1
Q ss_pred CCCCCcceEEE--cCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCcc-----
Q psy17262 11 TEPESLRKVFI--GGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNI----- 82 (172)
Q Consensus 11 ~~~~~~~~v~v--~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~----- 82 (172)
....++++||| +||+.++++++|+++|++||.|.++.++. .+|||||+|.+.++|+.|++. ++..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34457889999 77999999999999999999999988753 369999999999999999998 88877
Q ss_pred CCeEEEeeecCC
Q psy17262 83 DGRVVETKRAVP 94 (172)
Q Consensus 83 ~~~~i~v~~~~~ 94 (172)
.|+.++|.++..
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 578888887653
No 224
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-16 Score=99.29 Aligned_cols=69 Identities=28% Similarity=0.503 Sum_probs=63.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHHh-CCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTN-KETGAKRGFAFIEFNDYDVVDKIVCKY-NIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~A~~~~-~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+ ..++.++|+|||+|.+.++|.+|+..| |+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 82 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST 82 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC
Confidence 455678999999999 999999999999999999999988 778999999999999999999999999 653
No 225
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=99.50 Aligned_cols=67 Identities=30% Similarity=0.578 Sum_probs=62.9
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESV-NMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|+.||.|..+ .++.++.++.++|||||+|.+.++|.+|+..||+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 3567999999999 9999999999999999999 99999889999999999999999999999999874
No 226
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=100.65 Aligned_cols=68 Identities=29% Similarity=0.515 Sum_probs=63.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.||+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45678999999999 999999999999999999999999889999999999999999999999998873
No 227
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=1.2e-16 Score=102.24 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=64.9
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.||+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3455678999999999 999999999999999999999999888999999999999999999999999874
No 228
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=97.57 Aligned_cols=68 Identities=26% Similarity=0.449 Sum_probs=62.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+.. +.++|+|||+|.+.++|.+|+..||+.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 445678999999999 99999999999999999999999875 889999999999999999999999874
No 229
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=94.54 Aligned_cols=75 Identities=11% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCcce-EEEcCCCCCCCHHH----HHHHHhhc-CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE
Q psy17262 14 ESLRK-VFIGGLDYRTTDES----LQAFFEQW-GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV 86 (172)
Q Consensus 14 ~~~~~-v~v~nlp~~~t~~~----l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~ 86 (172)
.++.+ |||+|||.++++++ |+++|+.| |+|.++ ++ |+|||.|.+.++|++|++. ++..+.|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 99999999999988 55899999 599888 33 9999999999999999998 999999999
Q ss_pred EEeeecCCCCCC
Q psy17262 87 VETKRAVPRDEI 98 (172)
Q Consensus 87 i~v~~~~~~~~~ 98 (172)
|+|.++....+.
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999876554
No 230
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=4.3e-16 Score=100.47 Aligned_cols=80 Identities=14% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccce-EEEEECCHHHHHHHHhc-CCCccCC--eEE
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVV 87 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~-~~~~~~~--~~i 87 (172)
.+...-.|||+||++.+|+++|+++|++||.|.++.++.. .+|+ |||+|.+.++|+.|++. ++..+.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3445566789999999999999999999999999988764 2566 99999999999999999 9999988 899
Q ss_pred EeeecCCCC
Q psy17262 88 ETKRAVPRD 96 (172)
Q Consensus 88 ~v~~~~~~~ 96 (172)
+|.++.+..
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998764
No 231
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.2e-15 Score=97.98 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=65.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccce-EEEEECCHHHHHHHHhc-CCCccCC--eEEEeeec
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGF-GFITYSEAKMVDDAMSN-RPHNIDG--RVVETKRA 92 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~-~~~~~~~--~~i~v~~~ 92 (172)
-.|||+|||+.+++++|+++|++||.|.+++++.. .|+ |||+|.+.++|..|++. ++..+.| +.|.|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999998652 275 99999999999999998 9999987 68999998
Q ss_pred CCCC
Q psy17262 93 VPRD 96 (172)
Q Consensus 93 ~~~~ 96 (172)
.+..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7765
No 232
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=101.44 Aligned_cols=68 Identities=26% Similarity=0.566 Sum_probs=63.8
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++.+||.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45568999999999 999999999999999999999999888999999999999999999999999874
No 233
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2.1e-16 Score=106.48 Aligned_cols=80 Identities=25% Similarity=0.475 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE--EEe
Q psy17262 13 PESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV--VET 89 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~--i~v 89 (172)
....++|+|+|||+++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|++. ++..+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34668999999999999999999999999999999999988899999999999999999999997 899999965 777
Q ss_pred eec
Q psy17262 90 KRA 92 (172)
Q Consensus 90 ~~~ 92 (172)
.++
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 654
No 234
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.9e-17 Score=103.23 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeE-----E
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRV-----V 87 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~-----i 87 (172)
...++|||+|||+++++++|+++|+.||+|..+.++.+ |||||+|.+.++|+.|++. ++..+.|+. +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 46789999999999999999999999999999998764 8999999999999999997 899999987 6
Q ss_pred EeeecCCC
Q psy17262 88 ETKRAVPR 95 (172)
Q Consensus 88 ~v~~~~~~ 95 (172)
.+....+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66665543
No 235
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=99.42 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=55.6
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+.++|||+|||. +++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|++.+++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 45567999999999 999999999999999999999864 68999999999999999998764
No 236
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.3e-16 Score=112.06 Aligned_cols=80 Identities=24% Similarity=0.453 Sum_probs=73.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
..++|||+|||+++++++|+++|+.||.|..++++.+. +.++|+|||+|.+.++|.+|++. ++..+.|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999874 44799999999999999999998 9999999999999987
Q ss_pred CCC
Q psy17262 94 PRD 96 (172)
Q Consensus 94 ~~~ 96 (172)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 653
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=99.20 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=61.6
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKE---TGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|+.||.|..+.+..+.. ++.++|||||+|.+.++|.+|+..||+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 4567999999999 99999999999999999999998876 5688999999999999999999999874
No 238
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=3.1e-16 Score=101.18 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=63.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+|+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 445668999999999 9999999999999999999999988 8899999999999999999999998873
No 239
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=101.24 Aligned_cols=67 Identities=30% Similarity=0.526 Sum_probs=62.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|++|++.|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34567999999999 9999999999999999999999987 8999999999999999999999999874
No 240
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.8e-16 Score=96.27 Aligned_cols=65 Identities=25% Similarity=0.547 Sum_probs=61.3
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+ .+|+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC
Confidence 457999999999 999999999999999999999999889999999999999999999999 88874
No 241
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=106.34 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=61.8
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhccc--ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|+.|| .|..++++.+..++.++|||||+|.+.++|.+|+..|||.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 457999999999 99999999999999 9999999999999999999999999999999999999874
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=8.8e-17 Score=96.08 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=56.9
Q ss_pred ceEEEeCCCC-C------CHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++|||+|||. + ++++|+++|++||.|..+.+. +.++.++|+|||+|.+.++|.+|+..|||.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 5899999999 7 679999999999999999987 357899999999999999999999999875
No 243
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=2.9e-16 Score=98.67 Aligned_cols=68 Identities=25% Similarity=0.355 Sum_probs=63.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|++|+..||+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345678999999999 9999999999999999999999998 8999999999999999999999999874
No 244
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.4e-17 Score=95.40 Aligned_cols=62 Identities=39% Similarity=0.693 Sum_probs=59.1
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 4799999999 9999999999999999999999998889999999999999999999999776
No 245
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=1e-16 Score=99.63 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=61.5
Q ss_pred cccceEEEeCCCC-------CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-------QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-------~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|++||.|..+.++.++.|+.++|||||+|.+.++|++|+..|||.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc
Confidence 3457899999996 466899999999999999999999999999999999999999999999999974
No 246
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=104.30 Aligned_cols=69 Identities=17% Similarity=0.355 Sum_probs=63.7
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|.. ++++.+..++.++|||||+|.+. +|.+|+..||+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 3446678999999999 999999999999999977 99999999999999999999999 999999999984
No 247
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=5.2e-16 Score=97.09 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCC-----CCCHHHHHHHHhhcCceeEEEEEecCCC-CCccceEEEEECCHHHHHHHHhc-CCCccCCe
Q psy17262 13 PESLRKVFIGGLDY-----RTTDESLQAFFEQWGEIVDVVVMKDPIT-KRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR 85 (172)
Q Consensus 13 ~~~~~~v~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~ 85 (172)
+.+++.|+|.|+.. +-++++|++.|++||.|.++.++.++.+ +.++|+|||+|.+.++|.+|+.. ++..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999963 3478999999999999999999987644 67899999999999999999998 99999999
Q ss_pred EEEeeecCC
Q psy17262 86 VVETKRAVP 94 (172)
Q Consensus 86 ~i~v~~~~~ 94 (172)
.|.+.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998864
No 248
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-16 Score=97.49 Aligned_cols=67 Identities=31% Similarity=0.554 Sum_probs=62.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+ ++.++|+|||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 445678999999999 999999999999999999999987 7899999999999999999999999874
No 249
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=96.39 Aligned_cols=66 Identities=24% Similarity=0.485 Sum_probs=60.9
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA-KRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|+.||.|..+.++.+..++. ++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 357899999999 99999999999999999999998877665 8999999999999999999999874
No 250
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.68 E-value=1e-16 Score=94.31 Aligned_cols=61 Identities=36% Similarity=0.765 Sum_probs=57.7
Q ss_pred eEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 109 ~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|++ +|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC
Confidence 589999999 9999999999999999999999998889999999999999999999997 665
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.3e-16 Score=97.26 Aligned_cols=68 Identities=25% Similarity=0.497 Sum_probs=62.4
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+.++|||+|||. +++++|+++|+.|| |..+.++.+..++.++|||||+|.+.++|.+|+ .||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 78 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA 78 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC
Confidence 3455678999999999 99999999999996 999999999989999999999999999999999 88864
No 252
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=2e-16 Score=99.77 Aligned_cols=66 Identities=36% Similarity=0.649 Sum_probs=59.5
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 45568999999999 9999999999999999999999999899999999999999999999998764
No 253
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=99.73 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=63.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhccccee--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--------SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|. .+.++.+..++.++|+|||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 445678999999999 99999999999999999 6999999889999999999999999999999999874
No 254
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=102.56 Aligned_cols=69 Identities=26% Similarity=0.508 Sum_probs=64.4
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..||+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 445678999999999 999999999999999999999999888999999999999999999999999873
No 255
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=96.72 Aligned_cols=66 Identities=33% Similarity=0.629 Sum_probs=61.4
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHH
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~ 167 (172)
....+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3455678999999999 99999999999999999999999988999999999999999999999985
No 256
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=3.6e-16 Score=101.07 Aligned_cols=69 Identities=20% Similarity=0.511 Sum_probs=64.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..||+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 87 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 345567999999999 999999999999999999999999889999999999999999999999999874
No 257
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-16 Score=98.42 Aligned_cols=68 Identities=16% Similarity=0.451 Sum_probs=63.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|.+|+..|||.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345568999999999 9999999999999999999999998 8999999999999999999999999975
No 258
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=99.97 Aligned_cols=67 Identities=19% Similarity=0.462 Sum_probs=62.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|+ .+|+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 34568999999999 999999999999999999999999988999999999999999999999 88863
No 259
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=98.31 Aligned_cols=67 Identities=33% Similarity=0.674 Sum_probs=62.6
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+.. |+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 456678999999999 99999999999999999999999988999999999999999999999987 64
No 260
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.2e-16 Score=95.94 Aligned_cols=68 Identities=24% Similarity=0.407 Sum_probs=60.9
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|.+|+..||+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3455678999999999 99999999999999999999998854 36899999999999999999999873
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-16 Score=101.43 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.4
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....+.++|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|++.||+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 3455678999999999 99999999999999999999999988999999999999999999999999886
No 262
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=7.3e-16 Score=94.18 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=60.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.+..+ ++.++|+|||+|.+.++|.+|+..||+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 45668999999999 999999999999999999999874 6889999999999999999999999874
No 263
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=4.1e-16 Score=100.11 Aligned_cols=78 Identities=19% Similarity=0.369 Sum_probs=69.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v 89 (172)
..+..+++|||+|+ ++++++|+++|+.||+|.++.+. .++|||||+|.+.++|+.|++. ++..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999996 79999999999999999999986 3679999999999999999987 999999999999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987664
No 264
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=96.74 Aligned_cols=62 Identities=27% Similarity=0.295 Sum_probs=56.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...+.++|||+|||. +++++|+++|++||.|.++.+++ .+|+|||+|.+.++|.+|++.+|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcC
Confidence 445678999999999 99999999999999999999874 468999999999999999998875
No 265
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-15 Score=95.19 Aligned_cols=68 Identities=29% Similarity=0.515 Sum_probs=61.2
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.++.+.. .++|+|||+|.+.++|.+|+..||+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3455678999999999 99999999999999999999998764 38899999999999999999998874
No 266
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=97.58 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=62.8
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|++|++.||+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 44567899999999 999999999999999998888888888999999999999999999999999874
No 267
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=97.44 Aligned_cols=67 Identities=24% Similarity=0.468 Sum_probs=61.4
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET-GAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.|| |..+.++.+..+ +.++|||||+|.+.++|++|+ .+|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 345668999999999 99999999999999 999999999887 899999999999999999999 88864
No 268
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.5e-16 Score=97.88 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|++|++.||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3457999999999 999999999999999999999988888999999999999999999999998874
No 269
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=98.47 Aligned_cols=67 Identities=24% Similarity=0.469 Sum_probs=58.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecC-CCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNK-ETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.|| |..+.++.+. .++.++|+|||+|.+.++|.+|+ .+||.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 455678999999999 99999999999999 9999999987 68999999999999999999999 88874
No 270
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=4.2e-16 Score=106.01 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=71.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEee
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETK 90 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~ 90 (172)
.....++|||+|||+++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34578999999999999999999999999988766 44788999999999999999999997 9999999999999
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 98765
No 271
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=94.89 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=58.5
Q ss_pred cccceEEEeCCCC-CCHHHHH----HHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|||+|||. +++++|+ ++|++||.|..+.++.+..+ +|||||+|.+.++|++|++.|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456899999999 9999999 99999999999999988755 889999999999999999999874
No 272
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=1.1e-15 Score=102.41 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=63.8
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 34568999999999 999999999999999999999999989999999999999999999999999864
No 273
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=96.72 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=62.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344568999999999 9999999999999999999999987 5889999999999999999999999874
No 274
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=97.43 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=59.3
Q ss_pred ccccceEEEeCCCC-C------CHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-Q------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. + ++++|+++|+.||.|..+.++ ..++.++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 44567999999999 7 679999999999999999988 357899999999999999999999999874
No 275
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=1.6e-16 Score=93.55 Aligned_cols=60 Identities=43% Similarity=0.831 Sum_probs=57.2
Q ss_pred eEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 109 KMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 109 ~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
+|||+|||. +++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|++..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 589999999 999999999999999999999999888999999999999999999999863
No 276
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.7e-16 Score=96.06 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=59.6
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIES-VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....+|||+|||. +++++|+++|+.||.|.. +.++.+ .++.++|+|||+|.+.++|++|+.. |+.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~ 79 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE 79 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc
Confidence 34567999999999 999999999999999998 888888 6899999999999999999999987 553
No 277
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.8e-16 Score=95.84 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=55.5
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
....+.++|||+|||. +++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 3445678999999999 999999999999999999988753 7899999999999999999764
No 278
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=7.9e-16 Score=91.90 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=54.6
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.-|||+||+. +++++|+++|..||+|.++.+.. ++|||||+|.+.++|.+|++.||+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~ 66 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNC 66 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45799999999 99999999999999999999853 6899999999999999999999873
No 279
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=98.85 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=55.6
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
...+.++|||+|||. +++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345678999999999 999999999999999999999864 7899999999999999999776
No 280
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.5e-16 Score=96.91 Aligned_cols=63 Identities=29% Similarity=0.631 Sum_probs=60.2
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.+ |.+|+..+||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 5899999999 999999999999999999999999988999999999999999 99999999874
No 281
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=94.84 Aligned_cols=62 Identities=29% Similarity=0.313 Sum_probs=55.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...+.++|||+|||. +++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 345678999999999 999999999999999999988753 78999999999999999998753
No 282
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=98.21 Aligned_cols=63 Identities=29% Similarity=0.569 Sum_probs=58.0
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHh
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKET---GAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
...++|||+|||. +++++|+++|+.||.|. +.++.+..+ +.++|||||+|.+.++|++|++.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4567999999999 99999999999999999 888877766 689999999999999999999988
No 283
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=96.51 Aligned_cols=68 Identities=28% Similarity=0.490 Sum_probs=61.3
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|+..+||.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 3455678999999999 9999999999999999999998875 348999999999999999999999874
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.9e-16 Score=103.77 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=57.7
Q ss_pred ceEEEEECCHHHHHHHHhcCCCccCCeEEEeeecCCCCCCCCCccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEE
Q psy17262 59 GFGFITYSEAKMVDDAMSNRPHNIDGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN 137 (172)
Q Consensus 59 g~afv~f~~~~~a~~a~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~ 137 (172)
|.|+.+|.-++.+..++........+....-... ...........++|||+|||. +++++|+++|+.|| +..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g----~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSG----DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCC----CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 4667777776666555544222222222111111 111122344567999999999 99999999999999 77999
Q ss_pred EeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 138 MVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 138 ~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
++.++. +.++|+|||+|.+.++|++|+ .+|+.
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~ 108 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA 108 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC
Confidence 999876 899999999999999999999 66654
No 285
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=98.00 Aligned_cols=66 Identities=27% Similarity=0.614 Sum_probs=61.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+.. |+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence 45568999999999 99999999999999999999999988999999999999999999999987 54
No 286
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.6e-15 Score=93.97 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=59.5
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|++|++.||+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3455678999999999 999999999999999999998654 457899999999999999999999874
No 287
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=96.55 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=60.4
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccc-eeEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMV-TNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.+.++|||+|||. +++++|+++|+.||. |..+.++ .+..++.++|||||+|.+.++|.+|+..||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4567999999999 999999999999998 9999998 778888999999999999999999999985
No 288
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1e-15 Score=98.70 Aligned_cols=66 Identities=27% Similarity=0.552 Sum_probs=61.8
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+ .+|+.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 3568999999999 999999999999999999999999889999999999999999999999 78864
No 289
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=91.84 Aligned_cols=65 Identities=22% Similarity=0.414 Sum_probs=60.1
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.| .|..+.++.+ .++.++|+|||+|.+.++|++|+. +|+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 34567999999999 9999999999999 9999999998 689999999999999999999999 8874
No 290
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.7e-16 Score=95.48 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=58.5
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||. ..+.++.++ ++.++|+|||+|.+.++|++|+. +|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA 77 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC
Confidence 345567999999999 999999999999995 599999987 89999999999999999999995 5653
No 291
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=3.5e-16 Score=97.49 Aligned_cols=66 Identities=29% Similarity=0.695 Sum_probs=60.6
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH---HhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC---KYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~---~~~~ 170 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|++|+. .++|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHG 75 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECC
Confidence 44567999999999 9999999999999999999999998 89999999999999999999998 5554
No 292
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=97.01 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=60.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccce-eEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTI-ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....++|||+|||. +++++|+++|+.||.| ..+.++.+. ++.++|||||+|.+.++|.+|+.. |+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~ 78 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR 78 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 345568999999999 9999999999999999 889999988 899999999999999999999987 64
No 293
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-14 Score=92.39 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCCCCCCcceEEEcCCCCCCC-----------HHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 9 KCTEPESLRKVFIGGLDYRTT-----------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 9 ~~~~~~~~~~v~v~nlp~~~t-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
....+.++++|+|.||..... +++|+++|++||.|.++.+ .++ .++|+|||+|.+.++|+.|+..
T Consensus 8 ~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 8 GPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH
Confidence 344567899999999954432 6899999999999999966 433 3799999999999999999987
Q ss_pred -CCCccCCeEEEeeecCCCCCC
Q psy17262 78 -RPHNIDGRVVETKRAVPRDEI 98 (172)
Q Consensus 78 -~~~~~~~~~i~v~~~~~~~~~ 98 (172)
++..+.|+.|.|.++.+....
T Consensus 84 lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp STTCEETTEECEEEECCSCCCS
T ss_pred cCCCEECCcEEEEEEeCCCCCc
Confidence 899999999999998776443
No 294
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.1e-15 Score=108.33 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=69.5
Q ss_pred CCCCcceEEEcCCCCCC---------CHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCc
Q psy17262 12 EPESLRKVFIGGLDYRT---------TDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN 81 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~ 81 (172)
....+++|||+|||..+ ++++|+++|++||+|.+++++. ++|+|||+|.+.++|+.|++. ++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34678999999999998 7999999999999999999985 479999999999999999998 8888
Q ss_pred c------------CCeEEEeeecCCCC
Q psy17262 82 I------------DGRVVETKRAVPRD 96 (172)
Q Consensus 82 ~------------~~~~i~v~~~~~~~ 96 (172)
+ .|+.|.|.|+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 8 89999999997653
No 295
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=96.09 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=60.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccc---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....+|||+|||. +++++|+++|+.||. |..+.++.+.. +.++|+|||+|.+.++|.+|+. +|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 45567899999999 999999999999988 89999999887 8999999999999999999999 7764
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=2.3e-15 Score=96.26 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=60.3
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccc---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||. |..+.++.+.. +.++|+|||+|.+.++|.+|+. +|+.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~ 83 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE 83 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 44567899999999 999999999999999 89999999876 8999999999999999999999 7763
No 297
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.7e-15 Score=107.52 Aligned_cols=66 Identities=20% Similarity=0.385 Sum_probs=61.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhccc--ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFG--TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+|||+|||. +++++|+++|+.|| .|..++|+.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 567899999999 99999999999999 9999999999999999999999999999999999999864
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.2e-15 Score=99.60 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=59.9
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccc---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT---IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....+|||+|||. +++++|+++|+.||. |..+.++.+.. +.++|+|||+|.+.++|++|+. +|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 34567899999999 999999999999999 89999999987 9999999999999999999999 775
No 299
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=95.68 Aligned_cols=63 Identities=14% Similarity=0.342 Sum_probs=56.0
Q ss_pred cccccceEEE--eCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFV--GGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v--~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++||| +||+. +++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456788999 77999 99999999999999999988753 3789999999999999999999985
No 300
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=95.83 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=60.2
Q ss_pred ccccceEEEeCCCC-CCHHHHH---HHHhcccceeEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLR---EYFSQFGTIESVNMVTNKETG---AKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+ ++|+.||.|..+.++.+..++ .++|||||+|.+.++|++|++.||+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 34467999999999 9999999 999999999999998886543 55699999999999999999999874
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-16 Score=97.13 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=59.3
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|++|++ +|+.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc
Confidence 44567999999999 999999999999999988 677777778999999999999999999998 8864
No 302
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=95.94 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=57.1
Q ss_pred ccccceEEEeCCCC-CCHHHHH----HHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 44567999999999 9998866 6999999999987753 5788999999999999999999999974
No 303
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=93.56 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=57.8
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|||+|||. +++++|+++|+.| .|..+.|+.+.. +.++|+|||+|.+.++|++|+ .+|+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~ 78 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRM 78 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCC
Confidence 3456899999999 9999999999999 899999998875 899999999999999999999 56653
No 304
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.2e-16 Score=98.07 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=56.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 44668999999999 999999999999999944322222226888999999999999999999998874
No 305
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.7e-16 Score=98.83 Aligned_cols=67 Identities=16% Similarity=0.344 Sum_probs=60.0
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....+|||+|||. +++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+. +|+.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~ 89 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ 89 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC
Confidence 34557999999999 9999999999999999986666666789999999999999999999999 8864
No 306
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.8e-15 Score=91.74 Aligned_cols=66 Identities=24% Similarity=0.440 Sum_probs=58.0
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+.++|||+|||. +++++|+++|+.||.| .++.+ .++.++|+|||+|.+.++|++|+..||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3455678999999999 9999999999999987 55655 57889999999999999999999999873
No 307
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.2e-15 Score=92.45 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=55.4
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|||+|||. +++++|+++|+.||.|..+.++.+ |+|||+|.+.++|++|++.||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC
Confidence 4467999999999 999999999999999999999865 79999999999999999999873
No 308
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=6.4e-15 Score=90.87 Aligned_cols=62 Identities=24% Similarity=0.485 Sum_probs=56.0
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|++|++.||+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC
Confidence 44568999999999 999999999999999999988643 679999999999999999999874
No 309
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=7.6e-15 Score=93.31 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=58.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+.++|||+|||. +++++|+++|+.||.|..+.++.+ +.++|+|||+|.+.++|.+|+..|||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4567999999999 999999999999999999999865 455899999999999999999999874
No 310
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=87.59 Aligned_cols=62 Identities=35% Similarity=0.608 Sum_probs=56.2
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-CC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY-NI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~-~~ 170 (172)
.....++|||+|||. +++++|+++|+.||.|..+.+.. ++|+|||+|.+.++|.+|+..| |+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~ 71 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTT
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 445678999999999 99999999999999999999975 3789999999999999999988 65
No 311
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=89.04 Aligned_cols=60 Identities=18% Similarity=0.534 Sum_probs=55.2
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.+. +|+|||+|.+.++|++|+..+|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC
Confidence 45678999999999 9999999999999999999986 579999999999999999999873
No 312
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=4.3e-15 Score=95.65 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=57.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhccccee--EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIE--SVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.....+|||+|||. +++++|+++|+.| .|. .+.++.++. +.++|+|||+|.+.++|++|+...+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC
Confidence 34567899999999 9999999999999 677 899998876 8999999999999999999998644
No 313
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=92.92 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=54.7
Q ss_pred ccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..+.++|||+|||. +++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.||+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcC
Confidence 44678999999997 899999999999999999999754 47899999999999999998764
No 314
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=1.3e-14 Score=105.79 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC-CeEEEe
Q psy17262 12 EPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVET 89 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-~~~i~v 89 (172)
...++++|||+|||.++++++|+++|+.||.|.+++++.++ +|+|||+|.+.++|..|+.. ++..+. |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567999999999999999999999999999999998643 58999999999999999998 889998 999999
Q ss_pred eecC
Q psy17262 90 KRAV 93 (172)
Q Consensus 90 ~~~~ 93 (172)
.++.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9874
No 315
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=95.54 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=57.3
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccce----eEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTI----ESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....+|||+|||+ +++++|+++|+.||.| ..+.++.+. ++.++|+|||+|.+.++|.+|+.. |+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence 3457899999999 9999999999999875 689998884 799999999999999999999986 54
No 316
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=89.95 Aligned_cols=63 Identities=21% Similarity=0.464 Sum_probs=56.8
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|++.||+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 345668999999999 999999999999999999998743 689999999999999999999874
No 317
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=100.70 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC-CeEEEee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-~~~i~v~ 90 (172)
.++++|||+|||+.+++++|+++|+.|| .|..++++.+ .+|+|||+|.+.++|..|+.. ++..+. |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4589999999999999999999999999 9999998653 379999999999999999997 889999 9999999
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
++.++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98653
No 318
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=91.58 Aligned_cols=62 Identities=19% Similarity=0.483 Sum_probs=56.5
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|||. +++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..||+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 34567999999999 999999999999999999999765 789999999999999999999874
No 319
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=5.9e-15 Score=93.08 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=55.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhccc-ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+|||+|||. +++++|+++|+.|| .|..+.+.. ..++|||||+|.+.++|++|++.|||.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 346899999999 99999999999999 899998853 247899999999999999999999874
No 320
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-13 Score=85.69 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=65.1
Q ss_pred CCcceEEEcCCC-------CCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 14 ESLRKVFIGGLD-------YRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 14 ~~~~~v~v~nlp-------~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
...++|.|.-.. +++++++|+++|++||+|.++.++ +.++|||||+|.+.++|..|++. ...+.|+.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 346777777655 468999999999999999999987 35789999999999999999998 45578999
Q ss_pred EEeeecCCCC
Q psy17262 87 VETKRAVPRD 96 (172)
Q Consensus 87 i~v~~~~~~~ 96 (172)
|.|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (100)
T 2d9o_A 82 LKISWLEGQP 91 (100)
T ss_dssp CEEECSSCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 321
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=3.1e-15 Score=92.23 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=58.2
Q ss_pred ccccceEEEeCCCC-CCHHHHH----HHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLR----EYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+ ++|+.||.|..+.+.. ++.++|+|||+|.+.++|.+|+..|||.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 45678999999999 9999999 9999999999998874 4677899999999999999999999874
No 322
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=1.5e-14 Score=100.12 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=75.9
Q ss_pred CHHHHHHHHhcC---CCccCCeEEEeeecCCCCCCCCC---ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEe
Q psy17262 67 EAKMVDDAMSNR---PHNIDGRVVETKRAVPRDEIGKP---EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMV 139 (172)
Q Consensus 67 ~~~~a~~a~~~~---~~~~~~~~i~v~~~~~~~~~~~~---~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~ 139 (172)
+.+.+..|+... ...+.+....+............ ......++|||+|||. +++++|+++|+.||.|..++++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667777777664 22344444455544221111110 0233568999999999 9999999999999999999999
Q ss_pred ecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 140 TNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 140 ~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
++. ++.++|+|||+|.+.++|.+|+..++.
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 876 488999999999999999999987664
No 323
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.2e-14 Score=91.48 Aligned_cols=62 Identities=27% Similarity=0.548 Sum_probs=55.8
Q ss_pred ccccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 102 EANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 102 ~~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++|||+|||. +++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..|||.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 3455678999999999 9999999999999999999987 689999999999999999999874
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-16 Score=101.03 Aligned_cols=68 Identities=28% Similarity=0.519 Sum_probs=62.8
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIES--------VNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|.. +.++.++.++.++|||||+|.+.++|++|+..||+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 34567999999999 999999999999999999 889998888999999999999999999999998864
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=1.4e-14 Score=98.94 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=62.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......+|||+|||. +++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..+|+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 344567999999999 9999999999999999999999888 8899999999999999999999999874
No 326
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=2.5e-14 Score=101.49 Aligned_cols=77 Identities=10% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcC-ceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC-CeEEEee
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWG-EIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-GRVVETK 90 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-~~~i~v~ 90 (172)
.++++|||+|||+++++++|+++|+.|| .|..++++.. .+|+|||+|.+.++|.+|+.. ++..+. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999998653 468999999999999999997 899999 9999999
Q ss_pred ecCCC
Q psy17262 91 RAVPR 95 (172)
Q Consensus 91 ~~~~~ 95 (172)
++.++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 327
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=2e-14 Score=89.32 Aligned_cols=60 Identities=20% Similarity=0.393 Sum_probs=55.2
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..|||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 457999999999 9999999999999999999986 45789999999999999999999874
No 328
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=90.28 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=56.3
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
.....++|||+|||. +++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..+|+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 445678999999999 9999999999999998776 24578999999999999999999999886
No 329
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-15 Score=91.60 Aligned_cols=59 Identities=31% Similarity=0.528 Sum_probs=54.4
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|||+|||. +++++|+++|+.||.|..+.++.+ ++|+|||+|.+.++|.+|+..||+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 3799999999 999999999999999999999876 6889999999999999999988753
No 330
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.4e-15 Score=93.80 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=55.9
Q ss_pred ceEEEeCC----CC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHH--HhCC
Q psy17262 108 KKMFVGGL----KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND----YDV----VDKIVC--KYNI 170 (172)
Q Consensus 108 ~~l~v~~l----~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~A~~--~~~~ 170 (172)
..|||+|| |+ +++++|+.+|+.||.|..+.+..|+.|+.++|+|||+|.+ +++ |.+|+. .+||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 99 9999999999999999999999999999999999999996 433 788887 6665
No 331
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-14 Score=89.12 Aligned_cols=66 Identities=29% Similarity=0.500 Sum_probs=58.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 455678999999999 99999999999774 5777788788999999999999999999999999874
No 332
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=91.68 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=54.7
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|++||.|..+.++. ++|+|||+|.+.++|.+|+..|||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 456899999999 99999999999999999998863 5679999999999999999999974
No 333
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=88.09 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=55.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|. +.++. +.++|||||+|.+.++|++|+..||+.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 344567999999999 99999999999999997 56654 367889999999999999999999874
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.56 E-value=1.2e-14 Score=92.43 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=53.6
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+|||+|||. +++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|++.||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence 457899999999 999999999999999999998754 79999999999999999999874
No 335
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=8.9e-15 Score=102.16 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=65.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCce--eEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCe----E
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEI--VDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGR----V 86 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~----~ 86 (172)
.++++|||+|||+++++++|+++|+.||.| .+++++.+. +.++|+|||+|.+.++|..|+.. ++..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999998 899988764 44569999999999999999998 88888775 4
Q ss_pred EEeee
Q psy17262 87 VETKR 91 (172)
Q Consensus 87 i~v~~ 91 (172)
+.|++
T Consensus 199 ~~vk~ 203 (205)
T 3tyt_A 199 YTLKL 203 (205)
T ss_dssp EECEE
T ss_pred eEEEe
Confidence 55554
No 336
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=2.5e-14 Score=89.16 Aligned_cols=60 Identities=37% Similarity=0.541 Sum_probs=54.4
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.++ ++||||+|.+.++|++|+..||+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC
Confidence 44568999999999 9999999999999999999886 348999999999999999999873
No 337
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-14 Score=86.55 Aligned_cols=61 Identities=20% Similarity=0.408 Sum_probs=55.1
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.+++ ++|||+|.+.++|++|+..||+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC
Confidence 345678999999999 99999999999999999999873 38999999999999999999874
No 338
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=2.8e-14 Score=89.23 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHHhhcCceeEEEEEecCCC--CCccceEEEEECCHHHHHHHHhc-CCC
Q psy17262 14 ESLRKVFIGGL--DYRTT--------DESLQAFFEQWGEIVDVVVMKDPIT--KRSRGFGFITYSEAKMVDDAMSN-RPH 80 (172)
Q Consensus 14 ~~~~~v~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~-~~~ 80 (172)
.+++.|.|.|+ |.+.. +++|++.|++||+|.++.++.++.+ +.++|+|||+|.++++|.+|+.. ++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 33443 3699999999999999999987644 36799999999999999999998 999
Q ss_pred ccCCeEEEeeecCC
Q psy17262 81 NIDGRVVETKRAVP 94 (172)
Q Consensus 81 ~~~~~~i~v~~~~~ 94 (172)
.+.|+.|.+.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 339
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=3e-14 Score=103.01 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=72.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc--CCCccC---CeEEEe
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN--RPHNID---GRVVET 89 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~--~~~~~~---~~~i~v 89 (172)
+.++|||+|||+.+|+++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|..|+.. ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46799999999999999999999999999999999985 899999999999999999999998 344443 899999
Q ss_pred eecCCCC
Q psy17262 90 KRAVPRD 96 (172)
Q Consensus 90 ~~~~~~~ 96 (172)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9887653
No 340
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-14 Score=86.46 Aligned_cols=61 Identities=16% Similarity=0.395 Sum_probs=54.9
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.....++|||+|||. +++++|+++|+.||.|..+.+++ ++|||+|.+.++|.+|+..||+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC
Confidence 345668999999999 99999999999999999999863 38999999999999999999873
No 341
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-14 Score=86.46 Aligned_cols=61 Identities=23% Similarity=0.420 Sum_probs=54.7
Q ss_pred cccccceEEEeCCCC-CCHHHHHHHHhcc--cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD-QEEDDLREYFSQF--GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.| |.|..+.+. +|+|||+|.+.++|.+|+..||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC
Confidence 445678999999999 9999999999999 999998764 569999999999999999999873
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=6.3e-14 Score=87.55 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=59.8
Q ss_pred ccccceEEEeCCCC------CCHHHHHHHHhcccceeEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD------QEEDDLREYFSQFGTIESVNMVTNKET-GAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~------~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++++|+|.|+.. .++++|++.|++||.|..+.++.++.+ +.++|+|||+|.+.++|.+|+..|||.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 45678999999963 378999999999999999999988654 578999999999999999999999986
No 343
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=91.22 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=54.2
Q ss_pred ccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 104 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 104 ~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
..+.++|||+|||. +++++|+++|++||.|.++.+++ ++|+|||+|.+.++|.+|+..||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~ 83 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhc
Confidence 45678999999997 79999999999999999999863 47899999999999999999875
No 344
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.8e-15 Score=93.01 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=60.9
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 21 IGGLDYRTTDESLQAFF------------EQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
+.|||..+++++|++.| ++||+|.++.++.+. ++.++|+|||+|.++++|++|+.. ++..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 34566666777776666 999999999999877 578999999999999999999998 9999999999
Q ss_pred Eeeec
Q psy17262 88 ETKRA 92 (172)
Q Consensus 88 ~v~~~ 92 (172)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=86.53 Aligned_cols=56 Identities=29% Similarity=0.576 Sum_probs=49.0
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKI 164 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A 164 (172)
..+..+|||+|||. +++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH
Confidence 45667999999999 999999999999999999999864 689999999999999843
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=4.2e-14 Score=94.48 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=56.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|||+||+. +++++|+++|++||.|..+.+..+ .++|+|||+|.+.++|.+|++.|||.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456799999999 999999999999999999998643 25789999999999999999999985
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=6.1e-14 Score=90.38 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=54.9
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~A~~~~~~~ 171 (172)
....+|||+||+. +++++|+++|++||.|..+.+..+ .+|+ |||+|.+.++|.+|++.|||.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3445789999999 999999999999999999988753 2567 999999999999999999985
No 348
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=8.6e-14 Score=85.81 Aligned_cols=61 Identities=26% Similarity=0.492 Sum_probs=54.5
Q ss_pred cccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 103 ANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...+.++|||+|||. +++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..+||.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 345678999999993 9999999999999999999883 689999999999999999999874
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.2e-14 Score=85.15 Aligned_cols=61 Identities=30% Similarity=0.616 Sum_probs=52.9
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|+.||.|..+ +.+..++. ||||+|.+.++|.+|+. +|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence 3457999999999 9999999999999999987 44544444 99999999999999999 8864
No 350
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.9e-14 Score=85.80 Aligned_cols=60 Identities=27% Similarity=0.475 Sum_probs=53.5
Q ss_pred ccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+.+. +|+|||+|.+.++|.+|+..||+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 45677999999994 9999999999999999999884 679999999999999999999874
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=7.5e-14 Score=84.21 Aligned_cols=60 Identities=20% Similarity=0.521 Sum_probs=54.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcc----c-------ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQF----G-------TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .+|+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999 9999999999999 8 8999988643 789999999999999999 98874
No 352
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=7.6e-14 Score=88.90 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=69.4
Q ss_pred CcceEEEcCCCC--C---CCHHHHHHHHhhcCceeEEEEEecCC----CCCccceEEEEECCHHHHHHHHhc-CCCccCC
Q psy17262 15 SLRKVFIGGLDY--R---TTDESLQAFFEQWGEIVDVVVMKDPI----TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDG 84 (172)
Q Consensus 15 ~~~~v~v~nlp~--~---~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~ 84 (172)
+++.|+|.|+-. + --++||++.|++||+|.+++++.++. ++.++|++||+|.++++|.+|+.. ++..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999842 2 23689999999999999999998764 356789999999999999999999 9999999
Q ss_pred eEEEeeecCC
Q psy17262 85 RVVETKRAVP 94 (172)
Q Consensus 85 ~~i~v~~~~~ 94 (172)
+.|.+.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=87.14 Aligned_cols=60 Identities=22% Similarity=0.470 Sum_probs=52.9
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccc-eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGT-IESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
....++|||+|||. +++++|+++|+.||. |..+.+. ++|+|||+|.+.++|.+|+..||+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccC
Confidence 34567999999999 999999999999999 6666552 478999999999999999999997
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=1.9e-13 Score=87.60 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=52.1
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGF-AFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~A~~~~~~~ 171 (172)
..|||+||+. +++++|+++|+.||.|..+.+... .|+ |||+|.+.++|..|++.|||.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4578999999 999999999999999999998642 275 999999999999999999985
No 355
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=1e-13 Score=87.44 Aligned_cols=78 Identities=17% Similarity=0.425 Sum_probs=60.9
Q ss_pred CCeEEEeeecCCCCCCCCCccccccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHH
Q psy17262 83 DGRVVETKRAVPRDEIGKPEANATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDV 160 (172)
Q Consensus 83 ~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~ 160 (172)
.|..+.+..+..... .......++|||+|||. +++++|+++|+.||.|..+.+ ++|+|||+|.+.++
T Consensus 6 ~g~~~~~~~s~~~~~---~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK---NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERH 74 (110)
T ss_dssp CSCCCCCCCCCSCCS---CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHH
T ss_pred CCcccccccCCCCCC---CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHH
Confidence 344555554433221 12233457999999997 799999999999999999988 47899999999999
Q ss_pred HHHHHHHhCCC
Q psy17262 161 VDKIVCKYNIE 171 (172)
Q Consensus 161 a~~A~~~~~~~ 171 (172)
|++|+..||+.
T Consensus 75 A~~A~~~l~g~ 85 (110)
T 1wf1_A 75 ARAAVLGENGR 85 (110)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHcCCC
Confidence 99999999874
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=95.97 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=56.7
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEE--E---eecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN--M---VTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~--~---~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+.++|||+|||. +++++|+++|+.||.|..+. + +....++.++|||||+|.+.++|.+|+..|||.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 44567999999999 99999999999999988741 1 111235889999999999999999999999874
No 357
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=6.8e-14 Score=84.69 Aligned_cols=59 Identities=7% Similarity=0.201 Sum_probs=54.1
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..++|||+|||. +++++|+++|+.| .|..+.+. .++|+|||+|.+.++|.+|++.+|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 457899999999 9999999999999 99999883 67899999999999999999999873
No 358
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=84.82 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=55.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEE-EeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVN-MVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
...++|||+|||. +++++|+++|+.||.|..++ ++.++.++ .|||+|.+.++|.+|+..|||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCC
Confidence 3467999999999 99999999999999999994 77765433 3999999999999999999874
No 359
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-13 Score=82.79 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=54.2
Q ss_pred ccccceEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|+ .+++++|+++|+.||.|..+.+. .++|+|||+|.+.++|.+|+..||+.
T Consensus 12 ~~~~~~l~V~n~-~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 12 PRKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp CCCCSEEEEECS-SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCEEEEcCC-CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999995 69999999999999999999883 56789999999999999999999873
No 360
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=81.68 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccce-EEEeCCCC-CCHHH----HHHHHhccc-ceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKK-MFVGGLKD-QEEDD----LREYFSQFG-TIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~-l~v~~l~~-~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+..+ |||+|||. +++++ |+++|++|| .|..+ ++ |+|||+|.+.++|++|++.|||.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 4455 99999999 99887 668999994 99987 23 89999999999999999999985
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.5e-14 Score=84.48 Aligned_cols=56 Identities=34% Similarity=0.624 Sum_probs=50.1
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIV 165 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~ 165 (172)
...++|||+|||. +++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 3467999999999 999999999999999999998754 6889999999999998653
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=4.2e-13 Score=95.17 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=56.7
Q ss_pred ccccceEEEeCCCC-C---------CHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKD-Q---------EEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+||+. + ++++|+.+|+.||.|..+.++. ++|+|||+|.+.++|+.|++.|||.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 55678999999998 7 6999999999999999999974 4789999999999999999999985
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=4.7e-13 Score=99.67 Aligned_cols=66 Identities=9% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCccccccceEEEeCC--CC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 100 KPEANATVKKMFVGGL--KD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 100 ~~~~~~~~~~l~v~~l--~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
......++++|||+|+ +. +++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|||.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3445678889999995 55 99999999999999999987742 4789999999999999999999985
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=4.5e-13 Score=99.75 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCCCCCCcceEEEcC--CCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccC--
Q psy17262 9 KCTEPESLRKVFIGG--LDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNID-- 83 (172)
Q Consensus 9 ~~~~~~~~~~v~v~n--lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~-- 83 (172)
-...+.++++|||+| |+..+|+++|+++|++||+|.++.+.. ++|||||+|.+.++|++|++. ++..+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 344467889999999 578999999999999999999887653 579999999999999999998 877762
Q ss_pred -Ce--EEEeeec
Q psy17262 84 -GR--VVETKRA 92 (172)
Q Consensus 84 -~~--~i~v~~~ 92 (172)
|+ .+++.+.
T Consensus 85 ~g~~~~ly~~~~ 96 (345)
T 3tht_A 85 LGQKITLYLNFV 96 (345)
T ss_dssp TSCEEECEEEEC
T ss_pred cCCceEEEEEEe
Confidence 44 4566654
No 365
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=1.2e-12 Score=83.89 Aligned_cols=61 Identities=28% Similarity=0.413 Sum_probs=54.3
Q ss_pred ccccceEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 104 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 104 ~~~~~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
....++|||+|+ .+++++|+++|+.||.|..+.+. .++|||||+|.+.++|.+|+..||+.
T Consensus 36 ~~~~~~lfVgnl-~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 36 PRKGNTLYVYGE-DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCCCCEEEEECS-SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCC-CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999995 49999999999999999999884 56789999999999999999999874
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=2.3e-12 Score=80.40 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=57.2
Q ss_pred cccceEEEeCCC--C-CC--------HHHHHHHHhcccceeEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 105 ATVKKMFVGGLK--D-QE--------EDDLREYFSQFGTIESVNMVTNKET--GAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 105 ~~~~~l~v~~l~--~-~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+++.|.+.|+- . .. +++|++.|++||.|.++.++++..+ +.++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 467889999983 2 32 3689999999999999999988654 367899999999999999999999986
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=2.5e-12 Score=81.31 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCcceEEEcCCCCCCC----------HHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCc
Q psy17262 13 PESLRKVFIGGLDYRTT----------DESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHN 81 (172)
Q Consensus 13 ~~~~~~v~v~nlp~~~t----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~ 81 (172)
+.+++.|.+.|+-.... ++||++.|++||.|.++.+..+. .+|++||+|.+.++|.+|++. ++..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788999988843222 34889999999999999986543 589999999999999999998 9999
Q ss_pred cCCeEEEeeecCC
Q psy17262 82 IDGRVVETKRAVP 94 (172)
Q Consensus 82 ~~~~~i~v~~~~~ 94 (172)
+.|+.|.+.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999998753
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.8e-12 Score=82.55 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=57.9
Q ss_pred cccceEEEeCCCC---C---CHHHHHHHHhcccceeEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 105 ATVKKMFVGGLKD---Q---EEDDLREYFSQFGTIESVNMVTNKE----TGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 105 ~~~~~l~v~~l~~---~---~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
.++++|++.|+-. + -+++|++.|++||.|.++.|+.+.. ++.++|+|||+|.+.++|.+|+..|||.+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3678899999843 3 2589999999999999999998754 35678999999999999999999999863
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.4e-11 Score=77.72 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=54.7
Q ss_pred cccccceEEEeCCCC-CC-----------HHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 103 ANATVKKMFVGGLKD-QE-----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 103 ~~~~~~~l~v~~l~~-~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...+.++|+|.|+.. .. +++|+++|++||.|..+.+ .+. .++|+|||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999955 22 5799999999999999966 443 3799999999999999999999998
Q ss_pred C
Q psy17262 171 E 171 (172)
Q Consensus 171 ~ 171 (172)
.
T Consensus 87 ~ 87 (112)
T 2dit_A 87 R 87 (112)
T ss_dssp C
T ss_pred C
Confidence 5
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.9e-12 Score=80.72 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=48.6
Q ss_pred EeCCCC-CCHHHHHHHH------------hcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 112 VGGLKD-QEEDDLREYF------------SQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 112 v~~l~~-~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+.||+. +++++|++.| ++||.|..+.++++.. +.++|+|||+|.+.++|++|+..|||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 345555 5666665555 9999999999988764 688999999999999999999999986
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.8e-11 Score=72.43 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 118 QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 118 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+++++|+++|++||.|..+.++ +.++|||||+|.+.++|.+|+..+++
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 8999999999999999999987 36789999999999999999998664
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.8e-11 Score=75.67 Aligned_cols=76 Identities=20% Similarity=0.140 Sum_probs=64.4
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECC-HHHHHHHHhc---CCCccCCeE
Q psy17262 12 EPESLRKVFIGGLDYR-TTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSE-AKMVDDAMSN---RPHNIDGRV 86 (172)
Q Consensus 12 ~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~---~~~~~~~~~ 86 (172)
.-...+.|+|+||+++ +++++|+++|+.||+|..|.+..+.. .|||.|.+ +.+|..|+.. .+..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467789999999999 99999999999999999999987663 59999999 7888888886 467788887
Q ss_pred EEeeecC
Q psy17262 87 VETKRAV 93 (172)
Q Consensus 87 i~v~~~~ 93 (172)
+++....
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 7776543
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=8.7e-11 Score=74.19 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=52.6
Q ss_pred cccceEEEeCCCC-CC----------HHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 105 ATVKKMFVGGLKD-QE----------EDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
.+++.|.+.|+-. .. +++|++.|++||.|..+.+.++ .++|+|||+|.+.++|.+|+..|||.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888888744 21 2578999999999999988654 258999999999999999999999863
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=6e-10 Score=66.53 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=60.1
Q ss_pred CcceEEEcCCC----CCCCH----HHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeE
Q psy17262 15 SLRKVFIGGLD----YRTTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRV 86 (172)
Q Consensus 15 ~~~~v~v~nlp----~~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~ 86 (172)
+.-+|+|.-.| .+.-. .+|.+.|..||+|..++++.++ +||+|.+.++|.+|++.++..+.|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 44566666555 23333 5789999999999999998854 89999999999999999999999999
Q ss_pred EEeeecCCC
Q psy17262 87 VETKRAVPR 95 (172)
Q Consensus 87 i~v~~~~~~ 95 (172)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999987653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=7.2e-10 Score=70.27 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=52.3
Q ss_pred cccceEEEeCCCC--CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHHhC
Q psy17262 105 ATVKKMFVGGLKD--QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFND-YDVVDKIVCKYN 169 (172)
Q Consensus 105 ~~~~~l~v~~l~~--~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~A~~~~~ 169 (172)
.....|+|+||+. +++++|+++|+.||.|.++.+..+.. .|||+|.+ +++|..|+.++|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 4456899999987 89999999999999999999987754 39999999 899999999985
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=3.6e-09 Score=74.47 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCHHHHHHHHhhcCceeEEEEEecCC----CCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEEeeecC
Q psy17262 28 TTDESLQAFFEQWGEIVDVVVMKDPI----TKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVETKRAV 93 (172)
Q Consensus 28 ~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~v~~~~ 93 (172)
-.+++|++.|++||.|.++.++.+.. ++.++|++||+|.+.++|++|+.. ++..+.|+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45679999999999999999986543 347899999999999999999999 9999999999998875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.8e-09 Score=63.95 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=60.1
Q ss_pred CCcceEEEcCCCCC-----CCH----HHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCC
Q psy17262 14 ESLRKVFIGGLDYR-----TTD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDG 84 (172)
Q Consensus 14 ~~~~~v~v~nlp~~-----~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (172)
.+.-+|+|.-++.. +-. .+|.+.|..||+|..++++.++ +||+|.+.++|.+|++.++..+.|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45567888777643 222 4689999999999999999864 999999999999999999999999
Q ss_pred eEEEeeecC
Q psy17262 85 RVVETKRAV 93 (172)
Q Consensus 85 ~~i~v~~~~ 93 (172)
+.|+|+...
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998654
No 378
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=5.7e-08 Score=59.01 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc-----CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCCeEEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQW-----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDGRVVE 88 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~~~i~ 88 (172)
...++|.|.|||+.++++.|.-+|+.- |+|..+.... +-|.|+|.+.+.|++.|+...+.+.+..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 356789999999999999999999872 5788777643 478999999999999999988999999999
Q ss_pred eeecCCCCCCCCCccccccceEEEeCCCC
Q psy17262 89 TKRAVPRDEIGKPEANATVKKMFVGGLKD 117 (172)
Q Consensus 89 v~~~~~~~~~~~~~~~~~~~~l~v~~l~~ 117 (172)
|.+..+.. ..+|++.+|+.
T Consensus 78 V~P~~~~~----------~~r~ll~gl~~ 96 (104)
T 2dhx_A 78 LRPAPPRA----------PARLLLQGLPP 96 (104)
T ss_dssp EEECCCCC----------CCCCCCCSCCC
T ss_pred EEcCCCCC----------cceEeeecCCC
Confidence 98865543 34788888887
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=1.2e-08 Score=71.83 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=48.2
Q ss_pred CCHHHHHHHHhcccceeEEEEeecC----CCCCccceEEEEeCCHHHHHHHHHHhCCCC
Q psy17262 118 QEEDDLREYFSQFGTIESVNMVTNK----ETGAKRGFAFIEFNDYDVVDKIVCKYNIEF 172 (172)
Q Consensus 118 ~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~~g~afv~f~~~~~a~~A~~~~~~~~ 172 (172)
..+++|.+.|++||.|.++.+.++. .++.++|++||+|.+.++|++|+..|||++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 3567899999999999999998554 345889999999999999999999999974
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.9e-07 Score=55.86 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhc-----CceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEE
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQW-----GEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVV 87 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i 87 (172)
+..++|-+-|||..++...|+.+++++ |.+.++.+..+. +=|+|+|.|...|.+|.-. ++.++.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457899999999999999999999999 999999999875 5699999999998888755 9999999999
Q ss_pred Eee
Q psy17262 88 ETK 90 (172)
Q Consensus 88 ~v~ 90 (172)
.+.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 886
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=3.6e-07 Score=54.52 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=44.0
Q ss_pred ceEEEeCCC----C-CCH----HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLK----D-QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~----~-~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
-+++|...+ . +-. .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |||.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe
Confidence 466666654 1 222 5789999999999999998764 8999999999999998 8874
No 382
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=7.7e-07 Score=53.38 Aligned_cols=57 Identities=14% Similarity=0.148 Sum_probs=46.0
Q ss_pred ccceEEEeCCCC------CCH----HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD------QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~------~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
+--+++|..++. +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |||.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 345788887752 222 4688999999999999998764 9999999999999998 8763
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=5.6e-06 Score=50.78 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=53.3
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcc-----cceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQF-----GTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
..+++-+.|+|. ++...|+.+++++ |.+..+.+..+. +-|+|+|.+..+|-+|.-.|+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCe
Confidence 357899999999 9999999999999 999999887663 35999999999999999999874
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.12 E-value=1.8e-05 Score=47.50 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=49.1
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
+....+...+.++| +.|+.+...||.+.|+.||. ..|+.+.+- .|||.|.+++.|..|+..
T Consensus 8 g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 8 GPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 33444556666777 99999999999999999995 456666653 899999999999999885
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=6.4e-05 Score=47.06 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCccCC-eEEEe
Q psy17262 11 TEPESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHNIDG-RVVET 89 (172)
Q Consensus 11 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~~~~-~~i~v 89 (172)
.+....+-|.|-+.|+.. .+.|.+.|++||.|.+.... ....+-.|.|.++.+|++||..++..+.| ..|-|
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGV 91 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEE
Confidence 344567889999999985 67888999999999988762 13469999999999999999999999875 66777
Q ss_pred eecC
Q psy17262 90 KRAV 93 (172)
Q Consensus 90 ~~~~ 93 (172)
.+..
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.02 E-value=4.2e-05 Score=45.94 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=45.1
Q ss_pred ccccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 104 NATVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 104 ~~~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
....+.+++ +.|. +...+|.++|++||. ..|+++.|- .|||.|.+++.|..|+..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 344556777 8998 999999999999984 445666542 6999999999999999866
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.99 E-value=4.6e-05 Score=45.60 Aligned_cols=67 Identities=15% Similarity=0.036 Sum_probs=52.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCC--ccceEEEEECCHHHHHHHHhc-CCCccC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKR--SRGFGFITYSEAKMVDDAMSN-RPHNID 83 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~-~~~~~~ 83 (172)
..|.|++|||.+||+++.+.++....+.....+....+.. ....|||.|.+.+++...... ++..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999998776666655443322 346799999999999998887 666553
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=7.3e-05 Score=45.58 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=61.8
Q ss_pred CcceEEEcCCCCCC-CH----HHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc-CCCccCCeEEE
Q psy17262 15 SLRKVFIGGLDYRT-TD----ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN-RPHNIDGRVVE 88 (172)
Q Consensus 15 ~~~~v~v~nlp~~~-t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~i~ 88 (172)
-..+|+|.||+.++ .. +.+++.|..|++.......+. -+..-|.|.++++|.+|... ++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998866 33 466889999999877766653 24679999999999999988 89999999999
Q ss_pred eeecCCCC
Q psy17262 89 TKRAVPRD 96 (172)
Q Consensus 89 v~~~~~~~ 96 (172)
+..+.+..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99987543
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.86 E-value=0.00012 Score=43.81 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=52.3
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA--KRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
.+|.|++||. .+++++.+.++....+....+.....+.. .-..|+|.|.+.+++..-.+.++|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 4789999999 99999999999998888877766543322 2345999999999999999988874
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.77 E-value=7e-05 Score=45.10 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=43.2
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
+.+++ +.|. +...+|.++|++|| -..|.++.|- .|||-|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 35666 8898 99999999999998 4556666542 6999999999999999976
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.66 E-value=8.1e-05 Score=44.82 Aligned_cols=52 Identities=15% Similarity=0.336 Sum_probs=44.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
+.++| +.|+++...||.++|+.||. ..|..+.+- .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 44555 99999999999999999994 567667664 899999999999999985
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.0005 Score=43.01 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=48.7
Q ss_pred cccceEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 105 ATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 105 ~~~~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
....-|.|-+.|......+...|+.||.|...... ....+..|+|.+..+|++||.+..
T Consensus 22 ~~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG 80 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDG 80 (119)
T ss_dssp GGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCC
Confidence 34567899999997788899999999999998761 223589999999999999998743
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.001 Score=40.38 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=46.2
Q ss_pred cccceEEEeCCCC-CCHHHHHHHHhc-----ccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHH
Q psy17262 105 ATVKKMFVGGLKD-QEEDDLREYFSQ-----FGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCK 167 (172)
Q Consensus 105 ~~~~~l~v~~l~~-~~~~~l~~~f~~-----~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~ 167 (172)
....+|.|.|+|. ++++.|.-.|++ -|.|..+.... +-|+|+|.+.+.|++.|..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 4567899999999 999999999986 36777777643 3599999999999999986
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.42 E-value=0.00024 Score=45.09 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=55.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEec---------CCCCC-----ccceEEEEECCHHHHHHHHhcCCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKD---------PITKR-----SRGFGFITYSEAKMVDDAMSNRPH 80 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---------~~~~~-----~~g~afv~f~~~~~a~~a~~~~~~ 80 (172)
....|.|-+.|++. ...+.+.|++||.|.+-.-... +..+. ...|-.|+|.++.+|.+||..++.
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 34568888886655 4677889999999876221110 00011 246889999999999999999999
Q ss_pred ccCCeEEEeeecC
Q psy17262 81 NIDGRVVETKRAV 93 (172)
Q Consensus 81 ~~~~~~i~v~~~~ 93 (172)
.+.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.24 E-value=0.00078 Score=40.54 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=46.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCC-CC-ccceEEEEECCHHHHHHHHhc-CCCcc
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPIT-KR-SRGFGFITYSEAKMVDDAMSN-RPHNI 82 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~-~~g~afv~f~~~~~a~~a~~~-~~~~~ 82 (172)
.+-.|.|+.|||.+||+++.+.++..-++.....+....+ +. .-..|||.|.+.++....... ++..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4567999999999999998887776544322222221111 11 235689999999999998887 55544
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.22 E-value=0.00063 Score=40.96 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=47.7
Q ss_pred cceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 107 VKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGA--KRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 107 ~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
+.+|.|+.||+ +|++++.+.++..-.+..........+.. .-..|+|.|++.++...-.+.++|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 45899999999 99999999988876655544433322211 123589999999999998888876
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.15 E-value=0.00035 Score=53.97 Aligned_cols=60 Identities=10% Similarity=0.252 Sum_probs=45.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCC
Q psy17262 15 SLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH 80 (172)
Q Consensus 15 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 80 (172)
..|.|+|. .|...++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++.....
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~~ 111 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTHT 111 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccCC
Confidence 45789997 79999999999999999999999887643 36999999999999988876433
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.0067 Score=36.91 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=47.8
Q ss_pred ccceEEEeCCCC--CCH----HHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q psy17262 106 TVKKMFVGGLKD--QEE----DDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 106 ~~~~l~v~~l~~--~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~~~ 171 (172)
-+++|++.|++. ... +.++.+|..|+.+.....++.- ....|.|.++++|.+|...||+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence 356899999986 233 4678899999999998777532 24899999999999999999864
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.41 E-value=0.0027 Score=49.12 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=40.8
Q ss_pred ccccceEEEeCCCCCCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q psy17262 104 NATVKKMFVGGLKDQEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 104 ~~~~~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~ 166 (172)
.+..+.|+|..-+..++.+|.+.|+.||.|.++.+-.+ .| .||+|+|.+.++++.++.
T Consensus 50 ~qa~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 50 EQAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHTEEEEEECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred HHhcceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 34567899985334999999999999999999866432 22 599999999999998764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.22 E-value=0.0046 Score=39.26 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=44.9
Q ss_pred ceEEEeCCCCCCHHHHHHHHhcccceeEEE-EeecC------------CCC-CccceEEEEeCCHHHHHHHHHHhC
Q psy17262 108 KKMFVGGLKDQEEDDLREYFSQFGTIESVN-MVTNK------------ETG-AKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 108 ~~l~v~~l~~~~~~~l~~~f~~~g~v~~~~-~~~~~------------~~~-~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.-+.|-+.|......+.+.|++||.|..-. ..++. ... ...++..|+|++..+|.+||.+..
T Consensus 8 ~~VtVFGFp~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp CEEEEECCCGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred eEEEEEecCHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 357788888878888899999999987732 21100 000 135688999999999999998754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.43 E-value=0.28 Score=38.53 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=43.2
Q ss_pred ccceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 106 TVKKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 106 ~~~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
....++++ .|. |...+|.+.|+.||. ..+.++.+ ..|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34566666 777 999999999999995 45555433 269999999999999999873
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.04 E-value=0.25 Score=38.79 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=43.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
...+.++|+ +|+.+...+|.+.|+.||.+ ++..+.+ ..|||.|.+.+.|..++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHH
Confidence 345556665 99999999999999999964 5554443 4799999999999999876
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=61.07 E-value=22 Score=20.74 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=46.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhc
Q psy17262 14 ESLRKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSN 77 (172)
Q Consensus 14 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 77 (172)
..++-+.|-|+|..+-..++--.....|---.|..+. |.|.+.|.+.++-..|++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHH
Confidence 4567888999999999999988888888655555443 6899999999998888876
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.78 E-value=24 Score=20.62 Aligned_cols=53 Identities=11% Similarity=0.082 Sum_probs=40.7
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKY 168 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~ 168 (172)
.-+.+-|+|. +-..++.-.....|---++..... -|.++|.+.++...|++++
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyidg--------qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG--------QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS--------CEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC--------eeEEEecCChHHHHHHHHH
Confidence 3467889999 777777666677776666665532 4999999999999999865
No 405
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=53.63 E-value=35 Score=20.66 Aligned_cols=48 Identities=8% Similarity=0.000 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhh-cCc----eeEEEEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+.. |+. |.-..+...-..+.+.|+|.| |.|.+.|...
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46688899988875 342 222233333334557788876 8888888754
No 406
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=52.06 E-value=36 Score=20.35 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhhc-Cc----eeEEEEEecCCCCCccceEEEEECCHHHHHHHHh
Q psy17262 26 YRTTDESLQAFFEQW-GE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMS 76 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~-G~----v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 76 (172)
+..+..+|++.+... +. |.-..+...-..+.+.|+|.| |.+.+.|...--
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 567888999988754 42 222233334344567788866 888888876643
No 407
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=51.11 E-value=37 Score=20.31 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHhhc-Cc----eeEEEEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQW-GE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~-G~----v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+... +. |.-..+...-..+.+.|+|.| |.+.+.|...
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 667888999988754 42 222333344444567788866 8888887643
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.88 E-value=65 Score=21.29 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=33.1
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hhcCceeEEEEEecCCCCCccceEEEEECC
Q psy17262 18 KVFIGGLDYR---------TTDESLQAFF--EQWGEIVDVVVMKDPITKRSRGFGFITYSE 67 (172)
Q Consensus 18 ~v~v~nlp~~---------~t~~~l~~~f--~~~G~v~~~~~~~~~~~~~~~g~afv~f~~ 67 (172)
.+.|.|+|.. ..-.+|++.| ..|.++. ++.+..+ ..+.|.|.|.|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecC
Confidence 3567788762 3457899977 8898854 5555554 2377899999976
No 409
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=42.77 E-value=65 Score=20.72 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHhh-cCc-eeEE---EEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGE-IVDV---VVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~-v~~~---~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+.. |+. ...+ .+...-..+.+.|||.| |.+.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 56788899998876 453 1222 22222233456777777 8888887754
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.29 E-value=30 Score=20.08 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=20.1
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 146 AKRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 146 ~~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
...||.||++...++...++....|
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred ccCCEEEEEEecchhHHHHHHCCCC
Confidence 3689999999999888888766543
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=36.55 E-value=33 Score=20.38 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHhhc-CceeEEEEEecCCC----CCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQW-GEIVDVVVMKDPIT----KRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~----~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+... +.-.+..++..-.| +.+.|+|.| |.|.+.|...
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 466888998877653 33222222222222 446677765 7777776654
No 412
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=33.23 E-value=31 Score=14.63 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=10.2
Q ss_pred CHHHHHHHHhhc
Q psy17262 29 TDESLQAFFEQW 40 (172)
Q Consensus 29 t~~~l~~~f~~~ 40 (172)
.+.+|++++++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 578999999887
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.47 E-value=56 Score=23.13 Aligned_cols=48 Identities=8% Similarity=0.288 Sum_probs=33.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (172)
.-+.|+|||++++..-|..++.. +.+..+.++ -..|-|++.+..-+..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm----------------~QkEva~Rl~A~pg~k 158 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL----------------VQKEVAERMTARPKTP 158 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE----------------EEHHHHHHHTCCTTST
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE----------------eeeeeeeecccCCCCC
Confidence 46789999999999999999987 555433332 3456777777664333
No 414
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=32.41 E-value=96 Score=19.59 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHhh-cCc----eeEEEEEecCCCCCccceEEEEECCHHHHHHH
Q psy17262 26 YRTTDESLQAFFEQ-WGE----IVDVVVMKDPITKRSRGFGFITYSEAKMVDDA 74 (172)
Q Consensus 26 ~~~t~~~l~~~f~~-~G~----v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 74 (172)
+..+..+|++.+.. |+. |.-..+...-..+.+.|||.| |.+.+.|...
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 45788899998865 452 222233333334557777777 8888887754
No 415
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=27.40 E-value=41 Score=19.80 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=24.4
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHhhcCc
Q psy17262 8 SKCTEPESLRKVFIGGLDYRTTDESLQAFFEQWGE 42 (172)
Q Consensus 8 ~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~ 42 (172)
.....+-....+++.+..+ .+..+|++....+|-
T Consensus 10 ~~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg 43 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGA 43 (107)
T ss_dssp ----CTTTTCEEEECGGGG-GGHHHHHHHHHHTTC
T ss_pred ccccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCC
Confidence 3444456678888888765 678899999999986
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.19 E-value=78 Score=16.59 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=40.2
Q ss_pred ceEEEeCCCC-CCHHHHHHHHhcccceeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q psy17262 108 KKMFVGGLKD-QEEDDLREYFSQFGTIESVNMVTNKETGAKRGFAFIEFNDYDVVDKIVCKYN 169 (172)
Q Consensus 108 ~~l~v~~l~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~A~~~~~ 169 (172)
.++.|.++.= -....+...+.. ..|..+.+- ...+.+.|.|.+.+....+++.++
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~------~~~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVD------LNEAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEEC------SSEEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEE------ccCCEEEEEECCHHHHHHHHHHcC
Confidence 4677888876 677888999999 899888773 334457788886667777776643
No 417
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.20 E-value=1.1e+02 Score=22.78 Aligned_cols=58 Identities=2% Similarity=0.029 Sum_probs=34.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCc--cceEEEEECCHHHHHHHHhcCCCccCC
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRS--RGFGFITYSEAKMVDDAMSNRPHNIDG 84 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~--~g~afv~f~~~~~a~~a~~~~~~~~~~ 84 (172)
.-..|+|||++++..-|..++.....- +... .....+.+-..+.|++.+..-+....|
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~----------~~l~~~~~~~m~lmvQkEvA~Rl~A~PGsk~yg 202 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNK----------NWLYRFGKVKMLLWMPSTTARKLLARPGMHSRS 202 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHT----------CGGGGGSEEEEEEEEEHHHHHHHHCCTTSTTCC
T ss_pred ceEEEEECCCchHHHHHHHHHHhcccc----------ccccccCcceEEEEeEHHHHHHhcCCCCCcccc
Confidence 347899999999999888888752200 0000 001234455678888888764444433
No 418
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.11 E-value=10 Score=24.36 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=14.8
Q ss_pred HHHHHHHhhcCceeEEEEEecCCCCCccceEEEEEC
Q psy17262 31 ESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYS 66 (172)
Q Consensus 31 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~ 66 (172)
+|+.+++...|.|.... . .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 34445555556554332 1 4689999876
No 419
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.00 E-value=40 Score=24.01 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCCc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPHN 81 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~~ 81 (172)
....|+|||+.++..-|..++.....+..+.++ -..|-|++.+..-+..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m----------------~QkEva~Rl~A~pg~k 163 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM----------------LQNEVVERMVAEPGTK 163 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE----------------EEHHHHHHHTCCTTST
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE----------------eeHHHHHHHhCCCCCC
Confidence 457899999999999999999764444443333 3456777777663333
No 420
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.89 E-value=81 Score=17.21 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.0
Q ss_pred cceEEEEeCCH
Q psy17262 148 RGFAFIEFNDY 158 (172)
Q Consensus 148 ~g~afv~f~~~ 158 (172)
++.|+|.|.|-
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 44689998763
No 421
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=23.89 E-value=60 Score=17.74 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.9
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|+++++.++|+..|...
T Consensus 8 iLgv~~~as~~~Ik~ayr~l 27 (77)
T 1hdj_A 8 TLGLARGASDEEIKRAYRRQ 27 (77)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45789999999999988764
No 422
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.85 E-value=78 Score=17.80 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=12.4
Q ss_pred cceeEEEEeecCCCCCccceEEEEeCCH
Q psy17262 131 GTIESVNMVTNKETGAKRGFAFIEFNDY 158 (172)
Q Consensus 131 g~v~~~~~~~~~~~~~~~g~afv~f~~~ 158 (172)
|+|..+. ..++.|+|.|.|.
T Consensus 45 GTI~kV~--------~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVD--------SAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE--------TTTTEEEEEETTS
T ss_pred EEEEEec--------cCCCEEEEEEcCC
Confidence 6666553 2244689998763
No 423
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.67 E-value=60 Score=17.77 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.5
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|+++++.++|+..|...
T Consensus 12 iLgv~~~as~~eIk~ayr~l 31 (78)
T 2ctp_A 12 ILGVSRGASDEDLKKAYRRL 31 (78)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999875
No 424
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.51 E-value=61 Score=17.78 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.4
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|+++++.++|+..|...
T Consensus 12 iLgv~~~a~~~~Ik~ayr~l 31 (79)
T 2dn9_A 12 ILGVPRNASQKEIKKAYYQL 31 (79)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 56899999999999998764
No 425
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.23 E-value=63 Score=17.42 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=17.1
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|+++++.++|+..|...
T Consensus 13 iLgl~~~a~~~eIk~ayr~l 32 (73)
T 2och_A 13 VLGVKPDASDNELKKAYRKM 32 (73)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 56899999999999988764
No 426
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=22.26 E-value=69 Score=17.06 Aligned_cols=19 Identities=5% Similarity=-0.165 Sum_probs=15.6
Q ss_pred cceEEEEeCCHHHHHHHHH
Q psy17262 148 RGFAFIEFNDYDVVDKIVC 166 (172)
Q Consensus 148 ~g~afv~f~~~~~a~~A~~ 166 (172)
+..-+=.|.++|+|..|.+
T Consensus 26 ~r~~LGtf~T~eeAA~AyD 44 (63)
T 1gcc_A 26 ARVWLGTFETAEDAALAYD 44 (63)
T ss_dssp EEEEEEEESSHHHHHHHHH
T ss_pred eEEEeeeCCCHHHHHHHHH
Confidence 3466789999999999875
No 427
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=21.40 E-value=69 Score=16.32 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=12.0
Q ss_pred eCCHHHHHHHHHHhCC
Q psy17262 155 FNDYDVVDKIVCKYNI 170 (172)
Q Consensus 155 f~~~~~a~~A~~~~~~ 170 (172)
|.+.+.+.+||...+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 5677778888887766
No 428
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.29 E-value=68 Score=17.49 Aligned_cols=10 Identities=40% Similarity=0.677 Sum_probs=7.8
Q ss_pred cceEEEEeCC
Q psy17262 148 RGFAFIEFND 157 (172)
Q Consensus 148 ~g~afv~f~~ 157 (172)
+|.|+|+|.|
T Consensus 41 ~gtC~V~F~D 50 (66)
T 2eqj_A 41 KQSCFIIFED 50 (66)
T ss_dssp TTEEEEEETT
T ss_pred CcEEEEEEcc
Confidence 5679999876
No 429
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.09 E-value=1e+02 Score=18.46 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=20.0
Q ss_pred ccceEEEEECCHHHHHHHHhcC
Q psy17262 57 SRGFGFITYSEAKMVDDAMSNR 78 (172)
Q Consensus 57 ~~g~afv~f~~~~~a~~a~~~~ 78 (172)
.+||-||+=.+..+...|++..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTC
T ss_pred CceEEEEEeCCHHHHHHHHhcc
Confidence 5899999999999999999873
No 430
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=20.95 E-value=91 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=19.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhhc
Q psy17262 17 RKVFIGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 17 ~~v~v~nlp~~~t~~~l~~~f~~~ 40 (172)
..+.|+|+|+.++...+..++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 357899999999999888888753
No 431
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=51 Score=18.28 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=17.7
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|++.++.++|+..|...
T Consensus 14 iLgv~~~as~~eIk~ayr~l 33 (82)
T 2ej7_A 14 VLDVPRQASSEAIKKAYRKL 33 (82)
T ss_dssp HTTCCTTCCHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 66899999999999999775
No 432
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.90 E-value=44 Score=19.91 Aligned_cols=12 Identities=17% Similarity=0.684 Sum_probs=8.9
Q ss_pred HHHHHHHHhhcC
Q psy17262 30 DESLQAFFEQWG 41 (172)
Q Consensus 30 ~~~l~~~f~~~G 41 (172)
-..|+++|++||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 357889999998
No 433
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.66 E-value=81 Score=15.56 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=11.9
Q ss_pred eCCHHHHHHHHHHhCCC
Q psy17262 155 FNDYDVVDKIVCKYNIE 171 (172)
Q Consensus 155 f~~~~~a~~A~~~~~~~ 171 (172)
|.+.+.+.+||...+|.
T Consensus 19 F~d~~~~~~AL~~~~gn 35 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGS 35 (46)
T ss_dssp CCCHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHhCCC
Confidence 45667778888877663
No 434
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=20.35 E-value=38 Score=23.72 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCceeEEEEEecCCCCCccceEEEEECCHHHHHHHHhcCCC
Q psy17262 18 KVFIGGLDYRTTDESLQAFFEQWGEIVDVVVMKDPITKRSRGFGFITYSEAKMVDDAMSNRPH 80 (172)
Q Consensus 18 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~~~~ 80 (172)
-..|+|+|++++..-|..+++..+.+..+.++. ..|-|++.+..-+.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~----------------QkEva~Rl~a~pg~ 144 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML----------------QKEVVRRITAEVGS 144 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE----------------EHHHHHHHTCCTTS
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE----------------eHHHHHHhhCCCCC
Confidence 347999999999999999998655544433332 34567776665333
No 435
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.29 E-value=81 Score=20.00 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCC
Q psy17262 147 KRGFAFIEFNDYDVVDKIVCKYNI 170 (172)
Q Consensus 147 ~~g~afv~f~~~~~a~~A~~~~~~ 170 (172)
..||.||++...++...++....|
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTT
T ss_pred CCcEEEEEEEchHHHHHHHhCCCC
Confidence 578999999998888888776553
No 436
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.20 E-value=84 Score=14.78 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHhhc
Q psy17262 26 YRTTDESLQAFFEQW 40 (172)
Q Consensus 26 ~~~t~~~l~~~f~~~ 40 (172)
.+++.++|+..|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 467899999999875
No 437
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=77 Score=17.88 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.3
Q ss_pred EcCCCCCCCHHHHHHHHhhc
Q psy17262 21 IGGLDYRTTDESLQAFFEQW 40 (172)
Q Consensus 21 v~nlp~~~t~~~l~~~f~~~ 40 (172)
|-+|+++++.++|+..|...
T Consensus 12 iLgv~~~as~~eIk~ayr~l 31 (88)
T 2ctr_A 12 ILGVPKSASERQIKKAFHKL 31 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHHH
Confidence 56899999999999998764
Done!