Query psy17263
Match_columns 188
No_of_seqs 148 out of 1761
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 17:30:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034|consensus 100.0 1.5E-28 3.3E-33 172.6 17.3 177 1-186 1-187 (187)
2 COG5126 FRQ1 Ca2+-binding prot 100.0 1.9E-27 4.1E-32 161.7 15.0 146 17-177 8-158 (160)
3 KOG0038|consensus 99.9 4.7E-24 1E-28 140.1 13.9 168 1-178 1-180 (189)
4 KOG0027|consensus 99.9 5.3E-24 1.2E-28 147.1 14.2 145 22-176 2-150 (151)
5 KOG0044|consensus 99.9 2.6E-23 5.6E-28 146.2 13.8 166 1-178 1-178 (193)
6 KOG0028|consensus 99.9 2.3E-21 5E-26 129.4 13.5 141 22-176 27-171 (172)
7 PTZ00183 centrin; Provisional 99.9 5.3E-21 1.1E-25 133.0 15.5 143 22-178 11-157 (158)
8 PTZ00184 calmodulin; Provision 99.9 1.2E-20 2.7E-25 129.8 15.1 140 22-175 5-148 (149)
9 KOG0031|consensus 99.9 3.2E-20 7E-25 123.1 14.0 139 22-175 26-165 (171)
10 KOG0030|consensus 99.8 3.1E-19 6.7E-24 116.5 11.3 141 22-174 5-150 (152)
11 KOG0037|consensus 99.8 4.2E-17 9.1E-22 114.7 13.8 131 26-177 55-190 (221)
12 KOG0036|consensus 99.6 1.3E-14 2.7E-19 110.8 12.7 136 22-177 8-148 (463)
13 PF13499 EF-hand_7: EF-hand do 99.6 2E-14 4.4E-19 85.3 8.1 66 107-173 1-66 (66)
14 cd05022 S-100A13 S-100A13: S-1 99.4 6.7E-13 1.4E-17 82.8 7.7 71 103-177 5-77 (89)
15 PLN02964 phosphatidylserine de 99.4 2.2E-12 4.7E-17 106.0 12.6 128 8-149 120-271 (644)
16 cd05027 S-100B S-100B: S-100B 99.4 5.4E-12 1.2E-16 78.8 8.6 70 103-176 5-80 (88)
17 KOG0037|consensus 99.3 3.1E-11 6.6E-16 85.4 11.8 149 3-174 68-219 (221)
18 KOG2562|consensus 99.3 3.7E-11 8E-16 93.3 9.6 140 22-171 272-420 (493)
19 KOG0044|consensus 99.3 3.8E-11 8.3E-16 84.9 8.9 131 3-134 38-175 (193)
20 PTZ00183 centrin; Provisional 99.3 1.2E-10 2.6E-15 80.8 11.4 100 63-176 20-119 (158)
21 cd05026 S-100Z S-100Z: S-100Z 99.3 4.3E-11 9.2E-16 75.7 8.2 71 103-177 7-83 (93)
22 KOG0377|consensus 99.3 8E-11 1.7E-15 91.1 11.1 142 27-176 463-616 (631)
23 KOG4223|consensus 99.3 4.8E-11 1E-15 89.0 9.5 136 26-171 161-301 (325)
24 KOG4223|consensus 99.3 1.1E-10 2.3E-15 87.2 11.3 162 7-177 92-271 (325)
25 KOG0027|consensus 99.3 8.2E-11 1.8E-15 81.2 10.1 101 63-178 11-116 (151)
26 cd05029 S-100A6 S-100A6: S-100 99.3 5.5E-11 1.2E-15 74.2 8.1 71 103-177 7-81 (88)
27 PTZ00184 calmodulin; Provision 99.2 2.3E-10 5E-15 78.4 11.0 100 63-176 14-113 (149)
28 cd05025 S-100A1 S-100A1: S-100 99.2 9.8E-11 2.1E-15 74.0 8.3 71 103-177 6-82 (92)
29 cd05031 S-100A10_like S-100A10 99.2 7.9E-11 1.7E-15 74.7 7.6 71 104-178 6-82 (94)
30 COG5126 FRQ1 Ca2+-binding prot 99.2 3.9E-10 8.5E-15 77.2 11.1 99 63-176 23-121 (160)
31 cd00213 S-100 S-100: S-100 dom 99.2 1.3E-10 2.9E-15 72.8 7.7 71 103-177 5-81 (88)
32 cd00052 EH Eps15 homology doma 99.2 2.6E-10 5.7E-15 67.5 7.4 61 109-176 2-62 (67)
33 smart00027 EH Eps15 homology d 99.2 3.4E-10 7.5E-15 72.1 8.3 66 104-176 8-73 (96)
34 PF13833 EF-hand_8: EF-hand do 99.1 1.9E-10 4.2E-15 65.2 6.1 52 119-175 1-53 (54)
35 cd05023 S-100A11 S-100A11: S-1 99.1 5.6E-10 1.2E-14 69.8 8.2 71 103-177 6-82 (89)
36 cd00051 EFh EF-hand, calcium b 99.1 1.3E-09 2.8E-14 63.0 7.8 62 108-174 2-63 (63)
37 cd00252 SPARC_EC SPARC_EC; ext 99.1 1.3E-09 2.7E-14 71.4 8.0 63 104-175 46-108 (116)
38 KOG2643|consensus 99.1 1.5E-09 3.3E-14 84.0 9.6 152 2-176 296-454 (489)
39 PF14658 EF-hand_9: EF-hand do 99.0 1.3E-09 2.8E-14 63.1 6.4 62 110-175 2-64 (66)
40 KOG0028|consensus 99.0 7.5E-09 1.6E-13 69.9 10.1 101 63-177 36-136 (172)
41 KOG0040|consensus 99.0 1.5E-08 3.2E-13 88.4 13.6 136 22-174 2247-2397(2399)
42 cd05030 calgranulins Calgranul 99.0 4.7E-09 1E-13 65.6 7.3 70 104-177 6-81 (88)
43 KOG4666|consensus 98.9 4.2E-09 9E-14 78.8 8.0 161 12-187 209-371 (412)
44 PLN02964 phosphatidylserine de 98.9 1E-08 2.2E-13 84.7 10.9 98 64-176 147-244 (644)
45 KOG0034|consensus 98.9 3.5E-08 7.6E-13 69.8 10.9 122 6-134 48-175 (187)
46 smart00027 EH Eps15 homology d 98.9 8.1E-09 1.7E-13 65.7 6.3 69 22-91 4-74 (96)
47 PF13499 EF-hand_7: EF-hand do 98.8 2.3E-08 5E-13 59.0 7.2 63 64-132 4-66 (66)
48 cd05022 S-100A13 S-100A13: S-1 98.8 1E-08 2.2E-13 64.0 5.6 67 24-91 4-77 (89)
49 KOG4251|consensus 98.8 2.1E-08 4.7E-13 72.4 7.6 61 28-89 101-168 (362)
50 KOG2643|consensus 98.8 7.4E-08 1.6E-12 74.8 10.8 131 28-175 233-384 (489)
51 KOG0031|consensus 98.8 1E-07 2.3E-12 64.0 8.8 72 104-176 30-130 (171)
52 cd05027 S-100B S-100B: S-100B 98.7 3.5E-08 7.6E-13 61.6 6.1 65 25-90 5-80 (88)
53 KOG0041|consensus 98.7 7.1E-08 1.5E-12 67.6 8.0 68 104-176 97-164 (244)
54 cd05026 S-100Z S-100Z: S-100Z 98.7 6.8E-08 1.5E-12 61.0 5.8 65 25-90 7-82 (93)
55 PF00036 EF-hand_1: EF hand; 98.6 5.3E-08 1.1E-12 47.5 3.6 28 107-134 1-28 (29)
56 cd05024 S-100A10 S-100A10: A s 98.6 6.8E-07 1.5E-11 55.5 8.8 69 104-177 6-78 (91)
57 cd00213 S-100 S-100: S-100 dom 98.6 9.3E-08 2E-12 59.8 4.9 66 24-90 4-80 (88)
58 cd00252 SPARC_EC SPARC_EC; ext 98.6 1.5E-07 3.2E-12 61.7 5.8 66 22-88 42-107 (116)
59 cd05025 S-100A1 S-100A1: S-100 98.6 2.3E-07 4.9E-12 58.5 6.2 65 25-90 6-81 (92)
60 cd05029 S-100A6 S-100A6: S-100 98.6 2.3E-07 5E-12 57.9 6.1 66 24-90 6-80 (88)
61 KOG0030|consensus 98.5 2.8E-07 6.2E-12 60.9 6.1 69 103-176 8-78 (152)
62 cd00052 EH Eps15 homology doma 98.5 2.1E-07 4.5E-12 54.9 4.5 59 31-90 2-62 (67)
63 cd05031 S-100A10_like S-100A10 98.5 4.1E-07 8.8E-12 57.6 5.8 63 26-89 6-79 (94)
64 KOG0036|consensus 98.5 1.9E-06 4E-11 66.9 10.2 97 63-178 17-113 (463)
65 PF13405 EF-hand_6: EF-hand do 98.4 4.2E-07 9E-12 45.2 3.8 27 107-133 1-27 (31)
66 cd05023 S-100A11 S-100A11: S-1 98.4 4.7E-07 1E-11 56.6 4.9 66 24-90 5-81 (89)
67 KOG0751|consensus 98.4 5.8E-06 1.3E-10 65.6 10.1 124 28-170 108-239 (694)
68 KOG0041|consensus 98.3 2.7E-06 5.9E-11 59.8 7.4 102 22-131 93-200 (244)
69 PF13833 EF-hand_8: EF-hand do 98.3 2.2E-06 4.8E-11 48.3 5.8 51 75-134 2-53 (54)
70 PF00036 EF-hand_1: EF hand; 98.3 7.4E-07 1.6E-11 43.4 2.9 25 151-175 4-28 (29)
71 cd00051 EFh EF-hand, calcium b 98.3 4.2E-06 9.1E-11 47.9 6.7 60 63-132 3-62 (63)
72 PF13202 EF-hand_5: EF hand; P 98.2 1.9E-06 4E-11 40.4 3.2 25 108-132 1-25 (25)
73 PRK12309 transaldolase/EF-hand 98.2 1.2E-05 2.5E-10 63.6 8.5 56 103-176 331-386 (391)
74 KOG4065|consensus 98.1 1.2E-05 2.6E-10 51.5 6.1 68 106-173 67-143 (144)
75 cd05030 calgranulins Calgranul 98.1 7.3E-06 1.6E-10 51.2 4.7 65 25-90 5-80 (88)
76 KOG0751|consensus 98.0 2.2E-05 4.7E-10 62.4 7.6 101 22-134 27-136 (694)
77 PF12763 EF-hand_4: Cytoskelet 98.0 3.9E-05 8.5E-10 49.3 7.4 65 103-175 7-71 (104)
78 KOG0040|consensus 97.9 2.7E-05 6E-10 68.9 6.7 75 104-183 2251-2332(2399)
79 PF12763 EF-hand_4: Cytoskelet 97.9 2.1E-05 4.6E-10 50.5 3.8 67 22-90 4-72 (104)
80 cd05024 S-100A10 S-100A10: A s 97.8 5.5E-05 1.2E-09 47.1 5.2 64 25-90 5-77 (91)
81 PF14658 EF-hand_9: EF-hand do 97.8 0.00011 2.4E-09 42.7 5.9 61 65-134 3-64 (66)
82 PF14788 EF-hand_10: EF hand; 97.8 0.00011 2.4E-09 40.3 5.4 49 122-175 1-49 (51)
83 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.2E-05 2.6E-10 52.6 1.9 61 104-171 52-112 (113)
84 PF13202 EF-hand_5: EF hand; P 97.8 4.2E-05 9.2E-10 35.8 3.0 23 151-173 3-25 (25)
85 KOG1029|consensus 97.7 0.00042 9.2E-09 58.1 10.1 144 22-174 10-256 (1118)
86 KOG0038|consensus 97.6 0.00049 1.1E-08 46.2 7.7 98 29-134 75-177 (189)
87 KOG2562|consensus 97.6 0.00038 8.3E-09 55.1 7.9 102 65-175 230-343 (493)
88 PF10591 SPARC_Ca_bdg: Secrete 97.6 9.7E-05 2.1E-09 48.3 3.8 63 22-85 48-112 (113)
89 KOG0046|consensus 97.6 0.00033 7.1E-09 56.3 7.3 70 104-176 17-86 (627)
90 KOG1707|consensus 97.5 0.00076 1.6E-08 55.1 8.4 146 22-175 189-377 (625)
91 PRK12309 transaldolase/EF-hand 97.5 0.00024 5.2E-09 56.2 5.6 52 28-89 334-385 (391)
92 PF09279 EF-hand_like: Phospho 97.5 0.00088 1.9E-08 41.2 6.9 70 107-177 1-71 (83)
93 PF13405 EF-hand_6: EF-hand do 97.4 0.00027 5.9E-09 34.8 3.0 25 151-175 4-28 (31)
94 KOG4251|consensus 97.3 0.00016 3.4E-09 52.7 2.8 68 104-175 99-168 (362)
95 PF14788 EF-hand_10: EF hand; 97.3 0.0017 3.6E-08 35.7 6.0 48 78-134 2-49 (51)
96 KOG0169|consensus 97.3 0.0077 1.7E-07 50.8 12.6 141 22-176 130-275 (746)
97 KOG0377|consensus 97.2 0.00094 2E-08 52.8 6.1 66 63-134 550-615 (631)
98 KOG0046|consensus 97.2 0.00098 2.1E-08 53.7 6.0 68 22-91 13-87 (627)
99 smart00054 EFh EF-hand, calciu 97.1 0.0011 2.4E-08 31.1 3.5 27 108-134 2-28 (29)
100 smart00054 EFh EF-hand, calciu 96.8 0.0021 4.5E-08 30.0 3.2 25 151-175 4-28 (29)
101 KOG4666|consensus 96.3 0.0058 1.3E-07 46.6 4.1 85 75-176 241-325 (412)
102 KOG3555|consensus 96.1 0.012 2.5E-07 45.3 4.9 70 100-178 244-313 (434)
103 PLN02952 phosphoinositide phos 96.1 0.12 2.5E-06 43.5 10.9 94 75-176 14-111 (599)
104 KOG4347|consensus 96.1 0.03 6.4E-07 46.6 7.2 106 12-128 487-612 (671)
105 KOG4578|consensus 96.1 0.0042 9.2E-08 47.3 2.2 69 106-178 333-401 (421)
106 PF09069 EF-hand_3: EF-hand; 96.0 0.063 1.4E-06 33.4 6.8 70 105-177 2-77 (90)
107 KOG2243|consensus 95.9 0.017 3.7E-07 52.0 5.3 69 111-185 4062-4130(5019)
108 KOG1265|consensus 95.9 0.24 5.3E-06 43.0 11.8 121 37-175 157-299 (1189)
109 KOG3866|consensus 95.7 0.024 5.1E-07 43.1 4.9 69 108-176 246-325 (442)
110 KOG1955|consensus 95.4 0.038 8.2E-07 44.6 5.2 71 22-93 225-297 (737)
111 PF05042 Caleosin: Caleosin re 95.3 0.17 3.7E-06 35.4 7.5 67 63-133 99-165 (174)
112 KOG0035|consensus 94.9 0.16 3.4E-06 44.2 7.8 99 22-130 741-848 (890)
113 KOG1955|consensus 94.2 0.17 3.6E-06 41.1 6.0 67 102-175 227-293 (737)
114 KOG3555|consensus 94.0 0.055 1.2E-06 41.7 3.0 64 26-90 248-311 (434)
115 KOG0998|consensus 93.6 0.12 2.6E-06 45.4 4.7 146 22-176 123-346 (847)
116 PF05517 p25-alpha: p25-alpha 93.2 0.55 1.2E-05 32.4 6.7 65 109-177 2-71 (154)
117 PF05042 Caleosin: Caleosin re 92.7 0.72 1.6E-05 32.3 6.6 68 105-177 6-126 (174)
118 KOG0042|consensus 92.6 0.31 6.8E-06 40.3 5.3 69 104-177 591-659 (680)
119 KOG4347|consensus 92.5 0.35 7.5E-06 40.6 5.6 59 104-168 553-611 (671)
120 KOG0035|consensus 91.9 0.64 1.4E-05 40.7 6.6 74 104-178 745-819 (890)
121 KOG4065|consensus 91.7 0.38 8.1E-06 31.3 3.9 62 22-86 63-142 (144)
122 KOG0169|consensus 91.5 2.2 4.8E-05 36.7 9.2 95 63-176 139-233 (746)
123 KOG4578|consensus 91.5 0.08 1.7E-06 40.6 0.8 60 30-90 335-399 (421)
124 KOG1029|consensus 91.1 0.25 5.5E-06 42.3 3.4 67 22-89 189-257 (1118)
125 PF09279 EF-hand_like: Phospho 89.7 0.93 2E-05 27.5 4.4 63 63-134 3-69 (83)
126 KOG1707|consensus 89.6 0.87 1.9E-05 38.0 5.2 89 22-119 309-399 (625)
127 PF08726 EFhand_Ca_insen: Ca2+ 89.2 0.56 1.2E-05 27.7 2.9 61 104-173 4-67 (69)
128 PF14513 DAG_kinase_N: Diacylg 88.0 1.3 2.9E-05 29.9 4.5 75 8-119 7-82 (138)
129 KOG0039|consensus 87.6 1.7 3.6E-05 37.4 5.9 86 75-176 2-90 (646)
130 PF08414 NADPH_Ox: Respiratory 85.5 2.1 4.5E-05 27.1 4.0 77 13-91 15-94 (100)
131 KOG3866|consensus 82.8 0.56 1.2E-05 35.9 0.8 80 10-91 225-326 (442)
132 PLN02230 phosphoinositide phos 82.8 11 0.00024 32.1 8.4 72 104-176 27-103 (598)
133 PF00404 Dockerin_1: Dockerin 82.0 1.7 3.8E-05 19.1 2.0 17 116-132 1-17 (21)
134 PF08976 DUF1880: Domain of un 80.7 1.6 3.6E-05 28.4 2.3 33 140-176 4-36 (118)
135 KOG2557|consensus 79.9 8 0.00017 30.6 6.1 50 76-134 73-122 (427)
136 KOG0042|consensus 79.5 2.8 6.2E-05 35.0 3.8 72 22-94 587-662 (680)
137 KOG1264|consensus 79.2 18 0.0004 32.0 8.5 144 22-176 137-294 (1267)
138 PLN02222 phosphoinositide phos 78.0 14 0.0003 31.4 7.5 66 105-176 24-91 (581)
139 PF09068 EF-hand_2: EF hand; 77.9 18 0.00038 24.1 8.5 31 104-134 95-125 (127)
140 PLN02228 Phosphoinositide phos 76.3 20 0.00043 30.4 7.9 67 104-176 22-93 (567)
141 KOG0998|consensus 75.6 2.9 6.3E-05 37.1 3.1 70 22-92 277-348 (847)
142 KOG4301|consensus 75.1 9.4 0.0002 29.9 5.3 99 65-179 115-219 (434)
143 KOG4403|consensus 75.0 6.2 0.00013 31.8 4.4 91 75-178 42-132 (575)
144 PF14513 DAG_kinase_N: Diacylg 74.2 3.3 7.1E-05 28.1 2.4 46 26-73 30-82 (138)
145 PF07308 DUF1456: Protein of u 74.1 14 0.00031 21.6 4.8 47 123-174 14-60 (68)
146 PLN02223 phosphoinositide phos 73.9 26 0.00056 29.5 7.9 73 104-177 14-94 (537)
147 PF11829 DUF3349: Protein of u 73.6 15 0.00033 23.2 5.1 65 78-151 20-84 (96)
148 cd07313 terB_like_2 tellurium 73.0 7.8 0.00017 24.4 4.0 53 120-176 13-66 (104)
149 KOG4286|consensus 71.9 26 0.00057 30.6 7.5 148 12-177 403-582 (966)
150 KOG4004|consensus 70.7 2.1 4.6E-05 30.7 0.9 57 34-91 193-252 (259)
151 PF12174 RST: RCD1-SRO-TAF4 (R 68.3 6 0.00013 23.4 2.4 50 76-137 7-56 (70)
152 KOG2871|consensus 67.6 4 8.6E-05 32.3 1.9 67 104-174 307-373 (449)
153 PF05517 p25-alpha: p25-alpha 66.3 16 0.00035 25.2 4.6 59 32-91 6-71 (154)
154 PF04876 Tenui_NCP: Tenuivirus 64.1 44 0.00096 22.9 7.1 64 107-170 84-158 (175)
155 KOG2243|consensus 62.7 43 0.00094 32.0 7.3 55 34-89 4063-4120(5019)
156 PF09068 EF-hand_2: EF hand; 61.6 45 0.00098 22.2 8.1 71 104-174 39-124 (127)
157 PLN02952 phosphoinositide phos 59.1 33 0.00073 29.3 5.9 55 119-178 13-68 (599)
158 TIGR01848 PHA_reg_PhaR polyhyd 58.8 32 0.00068 22.2 4.4 57 113-173 10-75 (107)
159 PF04558 tRNA_synt_1c_R1: Glut 58.7 31 0.00066 24.2 4.9 50 104-155 83-132 (164)
160 TIGR03573 WbuX N-acetyl sugar 57.3 30 0.00065 27.3 5.2 44 119-173 299-342 (343)
161 PF11116 DUF2624: Protein of u 56.4 45 0.00098 20.5 5.9 46 122-172 14-59 (85)
162 COG5562 Phage envelope protein 55.6 8.8 0.00019 25.7 1.7 27 153-179 78-104 (137)
163 PF01023 S_100: S-100/ICaBP ty 55.6 30 0.00065 18.3 4.0 31 104-134 4-36 (44)
164 PTZ00373 60S Acidic ribosomal 54.9 57 0.0012 21.3 6.6 53 109-171 6-58 (112)
165 PF03979 Sigma70_r1_1: Sigma-7 53.0 25 0.00054 21.3 3.3 44 105-157 6-49 (82)
166 COG5562 Phage envelope protein 53.0 15 0.00032 24.7 2.4 26 63-89 75-100 (137)
167 cd07316 terB_like_DjlA N-termi 52.5 56 0.0012 20.4 5.3 52 120-175 13-64 (106)
168 KOG3449|consensus 52.4 62 0.0013 20.9 5.4 54 109-172 4-57 (112)
169 KOG3442|consensus 52.2 41 0.00088 22.3 4.2 42 120-163 53-94 (132)
170 KOG4004|consensus 51.7 7.4 0.00016 28.1 0.9 56 112-174 193-249 (259)
171 PRK09430 djlA Dna-J like membr 51.5 1.1E+02 0.0023 23.4 9.4 103 39-150 66-173 (267)
172 PF05099 TerB: Tellurite resis 51.2 9.9 0.00021 25.3 1.5 53 119-175 36-89 (140)
173 cd05833 Ribosomal_P2 Ribosomal 49.2 71 0.0015 20.7 5.4 56 110-175 5-60 (109)
174 PF10437 Lip_prot_lig_C: Bacte 44.7 66 0.0014 19.4 4.3 42 125-173 44-86 (86)
175 PF07879 PHB_acc_N: PHB/PHA ac 44.4 20 0.00043 20.7 1.7 22 113-134 10-31 (64)
176 PRK14981 DNA-directed RNA poly 44.1 70 0.0015 20.8 4.5 27 124-151 80-106 (112)
177 PF08414 NADPH_Ox: Respiratory 44.0 84 0.0018 20.0 6.0 63 104-176 28-93 (100)
178 KOG0506|consensus 43.4 1E+02 0.0023 25.7 6.1 65 110-176 90-159 (622)
179 PF05099 TerB: Tellurite resis 43.1 62 0.0013 21.4 4.4 89 40-137 35-129 (140)
180 KOG2301|consensus 42.8 11 0.00023 36.0 0.8 67 22-89 1411-1484(1592)
181 TIGR00988 hip integration host 42.4 44 0.00094 20.7 3.3 46 124-170 2-49 (94)
182 PF03672 UPF0154: Uncharacteri 41.5 71 0.0015 18.5 4.2 39 108-148 18-56 (64)
183 PF09336 Vps4_C: Vps4 C termin 40.9 33 0.00072 19.6 2.4 26 122-148 29-54 (62)
184 PF12419 DUF3670: SNF2 Helicas 40.0 87 0.0019 21.2 4.7 50 119-173 80-139 (141)
185 cd06404 PB1_aPKC PB1 domain is 39.1 70 0.0015 19.6 3.6 50 75-124 17-77 (83)
186 PF08461 HTH_12: Ribonuclease 38.3 64 0.0014 18.6 3.3 37 119-160 10-46 (66)
187 PF13986 DUF4224: Domain of un 37.2 50 0.0011 17.7 2.5 36 9-44 3-38 (47)
188 PRK09430 djlA Dna-J like membr 36.4 1E+02 0.0022 23.4 5.0 55 118-177 67-122 (267)
189 TIGR00135 gatC glutamyl-tRNA(G 35.6 1E+02 0.0023 19.0 4.2 25 123-148 1-25 (93)
190 PF02337 Gag_p10: Retroviral G 35.3 1.1E+02 0.0025 19.0 5.2 75 1-84 1-80 (90)
191 PF09873 DUF2100: Uncharacteri 35.1 1.2E+02 0.0027 22.1 4.9 39 115-153 34-83 (215)
192 TIGR01446 DnaD_dom DnaD and ph 35.1 80 0.0017 18.3 3.5 39 112-150 2-40 (73)
193 PF08672 APC2: Anaphase promot 34.9 90 0.0019 17.7 4.0 31 104-135 13-45 (60)
194 TIGR01639 P_fal_TIGR01639 Plas 34.0 93 0.002 17.7 4.0 27 121-148 8-34 (61)
195 PF06648 DUF1160: Protein of u 34.0 1.4E+02 0.003 19.8 4.7 44 103-149 34-77 (122)
196 PF07553 Lipoprotein_Ltp: Host 33.8 83 0.0018 17.0 3.2 31 120-150 16-46 (48)
197 PF07261 DnaB_2: Replication i 32.9 71 0.0015 18.6 3.1 41 111-151 1-41 (77)
198 PF02864 STAT_bind: STAT prote 32.7 78 0.0017 24.0 3.8 51 121-171 177-231 (254)
199 PF12486 DUF3702: ImpA domain 32.5 43 0.00093 23.0 2.2 30 24-53 65-94 (148)
200 PF00427 PBS_linker_poly: Phyc 32.3 1E+02 0.0022 20.7 3.9 21 161-181 42-62 (131)
201 PF01885 PTS_2-RNA: RNA 2'-pho 32.0 1E+02 0.0022 22.0 4.2 33 115-148 25-57 (186)
202 cd08032 LARP_7 La RNA-binding 31.7 74 0.0016 19.4 2.9 32 22-53 17-48 (82)
203 PF13829 DUF4191: Domain of un 31.6 1.8E+02 0.004 21.5 5.4 44 112-157 157-200 (224)
204 TIGR02675 tape_meas_nterm tape 31.5 39 0.00084 20.1 1.7 17 118-134 26-42 (75)
205 cd07909 YciF YciF bacterial st 31.4 55 0.0012 22.4 2.6 34 11-44 31-66 (147)
206 PRK00819 RNA 2'-phosphotransfe 30.5 1.2E+02 0.0026 21.6 4.3 32 116-148 27-58 (179)
207 COG2818 Tag 3-methyladenine DN 30.3 46 0.00099 23.8 2.1 44 104-148 53-96 (188)
208 KOG2301|consensus 30.1 20 0.00042 34.4 0.4 73 100-178 1411-1487(1592)
209 PRK00523 hypothetical protein; 30.0 1.3E+02 0.0027 17.9 4.9 44 107-156 25-68 (72)
210 cd04411 Ribosomal_P1_P2_L12p R 29.5 1.6E+02 0.0034 18.9 6.9 43 123-175 17-59 (105)
211 PF05920 Homeobox_KN: Homeobox 29.1 83 0.0018 16.1 2.5 23 9-31 11-34 (40)
212 TIGR01565 homeo_ZF_HD homeobox 28.9 98 0.0021 17.5 3.0 33 22-59 8-45 (58)
213 COG0721 GatC Asp-tRNAAsn/Glu-t 28.7 1.5E+02 0.0032 18.7 4.1 26 122-148 2-27 (96)
214 cd01611 GABARAP Ubiquitin doma 28.5 1.3E+02 0.0028 19.6 3.8 48 75-123 48-101 (112)
215 TIGR00987 himA integration hos 28.4 76 0.0016 19.7 2.7 46 123-170 2-49 (96)
216 cd01612 APG12_C Ubiquitin-like 28.2 1.5E+02 0.0032 18.3 3.9 47 75-123 23-76 (87)
217 cd08029 LA_like_fungal La-moti 27.9 1E+02 0.0022 18.5 3.1 32 22-53 12-43 (76)
218 TIGR01321 TrpR trp operon repr 27.6 98 0.0021 19.5 3.0 49 10-58 21-69 (94)
219 COG3763 Uncharacterized protei 27.6 1.4E+02 0.003 17.7 5.0 39 108-148 25-63 (71)
220 PLN02859 glutamine-tRNA ligase 27.4 3.1E+02 0.0068 24.6 6.9 50 104-155 85-134 (788)
221 PF09373 PMBR: Pseudomurein-bi 27.4 75 0.0016 15.5 2.1 15 120-134 2-16 (33)
222 PF04282 DUF438: Family of unk 26.8 1.5E+02 0.0032 17.6 6.2 43 104-150 14-56 (71)
223 PF00046 Homeobox: Homeobox do 26.6 97 0.0021 16.7 2.7 34 22-60 7-41 (57)
224 KOG1954|consensus 26.6 97 0.0021 25.1 3.5 57 107-171 445-501 (532)
225 PF12213 Dpoe2NT: DNA polymera 26.5 1.5E+02 0.0032 17.6 6.3 65 104-174 5-71 (73)
226 COG1460 Uncharacterized protei 26.2 1.3E+02 0.0029 19.6 3.5 27 123-150 80-106 (114)
227 PF11569 Homez: Homeodomain le 26.1 59 0.0013 18.3 1.7 24 8-31 22-46 (56)
228 PF04157 EAP30: EAP30/Vps36 fa 26.1 2.7E+02 0.0058 20.4 9.3 49 9-60 23-74 (223)
229 TIGR00624 tag DNA-3-methyladen 25.0 1.9E+02 0.0042 20.6 4.5 61 104-170 51-113 (179)
230 PRK06402 rpl12p 50S ribosomal 25.0 2E+02 0.0043 18.6 5.9 42 118-170 13-54 (106)
231 smart00708 PhBP Insect pheromo 24.8 1.6E+02 0.0035 17.8 3.9 52 123-175 11-63 (103)
232 PF05383 La: La domain; Inter 24.5 62 0.0013 18.4 1.6 32 22-53 9-40 (61)
233 PF13720 Acetyltransf_11: Udp 24.3 1.8E+02 0.0038 17.7 4.6 52 17-71 23-76 (83)
234 PRK01381 Trp operon repressor; 24.2 1.3E+02 0.0028 19.2 3.1 50 10-59 21-70 (99)
235 PF11020 DUF2610: Domain of un 24.0 1.6E+02 0.0035 17.9 3.3 42 130-175 36-77 (82)
236 PRK00199 ihfB integration host 23.9 1.8E+02 0.004 17.8 4.8 48 123-171 1-50 (94)
237 KOG3741|consensus 23.2 71 0.0015 27.2 2.3 60 109-178 589-650 (655)
238 PRK00285 ihfA integration host 23.1 1.1E+02 0.0024 19.0 2.8 48 122-171 2-51 (99)
239 smart00549 TAFH TAF homology. 22.6 2.1E+02 0.0045 17.9 3.7 16 161-176 37-52 (92)
240 PRK01844 hypothetical protein; 22.5 1.8E+02 0.004 17.3 4.8 44 107-156 24-67 (72)
241 PLN02554 UDP-glycosyltransfera 22.5 1.7E+02 0.0036 24.4 4.4 57 120-176 422-479 (481)
242 PF09851 SHOCT: Short C-termin 22.3 1.1E+02 0.0024 14.6 2.3 15 120-134 14-28 (31)
243 COG2058 RPP1A Ribosomal protei 22.1 2.3E+02 0.0051 18.3 5.8 50 111-171 6-55 (109)
244 PF10440 WIYLD: Ubiquitin-bind 22.1 1.8E+02 0.0039 17.0 4.4 34 126-159 9-42 (65)
245 PF02269 TFIID-18kDa: Transcri 22.0 92 0.002 19.4 2.2 37 145-181 36-72 (93)
246 PF10163 EnY2: Transcription f 22.0 1.8E+02 0.0038 17.8 3.5 48 126-176 17-64 (86)
247 PLN00138 large subunit ribosom 21.9 2.4E+02 0.0052 18.4 5.7 51 111-171 6-56 (113)
248 PF13797 Post_transc_reg: Post 21.9 2.1E+02 0.0045 17.7 4.3 49 119-176 24-72 (87)
249 PRK05988 formate dehydrogenase 21.9 2.2E+02 0.0047 19.7 4.3 22 40-61 34-56 (156)
250 PF13592 HTH_33: Winged helix- 21.8 1.6E+02 0.0035 16.4 3.9 34 120-157 2-35 (60)
251 PRK00034 gatC aspartyl/glutamy 21.7 2.1E+02 0.0045 17.6 4.6 26 122-148 2-27 (95)
252 PTZ00454 26S protease regulato 21.7 4.4E+02 0.0096 21.4 7.4 77 105-186 318-396 (398)
253 PRK03095 prsA peptidylprolyl i 21.4 3.8E+02 0.0082 20.5 6.3 58 119-176 31-109 (287)
254 PF13373 DUF2407_C: DUF2407 C- 21.4 1.3E+02 0.0029 20.4 3.0 26 14-39 3-28 (140)
255 KOG3077|consensus 21.3 3.8E+02 0.0082 20.5 6.3 68 104-176 62-130 (260)
256 PHA02105 hypothetical protein 21.2 1.7E+02 0.0038 16.5 3.0 52 122-177 4-59 (68)
257 TIGR02834 spo_ytxC putative sp 21.1 43 0.00093 25.7 0.7 63 79-144 174-236 (276)
258 TIGR01201 HU_rel DNA-binding p 21.0 2.7E+02 0.0059 18.9 4.6 35 120-156 28-62 (145)
259 cd08033 LARP_6 La RNA-binding 20.9 1.3E+02 0.0028 18.1 2.6 32 22-53 12-43 (77)
260 PRK07539 NADH dehydrogenase su 20.5 2.5E+02 0.0054 19.2 4.3 19 42-60 35-54 (154)
261 PF08839 CDT1: DNA replication 20.4 3E+02 0.0066 19.0 4.8 31 118-148 24-54 (163)
262 TIGR01958 nuoE_fam NADH-quinon 20.2 2.4E+02 0.0053 19.1 4.2 35 9-43 32-67 (148)
263 PF06226 DUF1007: Protein of u 20.1 1.4E+02 0.003 21.8 3.2 24 111-134 55-78 (212)
No 1
>KOG0034|consensus
Probab=99.96 E-value=1.5e-28 Score=172.55 Aligned_cols=177 Identities=51% Similarity=0.877 Sum_probs=160.5
Q ss_pred CCCcccccCcHHHHHHHHhcc-----CCHHHHHHHHHHHhhhCCC-CCCCcCHHHhcccccccCCChhHHHHHHHhhcCC
Q psy17263 1 MGNRSSLLLREEEIAQIQEET-----VTPNQIERLYSRFTSLDRG-DCGTLSREDFLRIPELAINPLGDRIVHVFFEEGC 74 (188)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~F~~~D~~-~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~ 74 (188)
||+..|+..+.++.+.+...+ ++..++..+..+|.+++++ +.|+|+.+||..++.+..+|...+++..++.++
T Consensus 1 Mg~~~s~~~~~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~- 79 (187)
T KOG0034|consen 1 MGNLSSTLLSDEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDG- 79 (187)
T ss_pred CCcccccccchhhhHHHHhccCCCcccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccC-
Confidence 899999977767777776665 6889999999999999999 999999999999999999999999999999998
Q ss_pred CCc-ccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Q psy17263 75 SDR-VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANIS--EEQLTSIAER 151 (188)
Q Consensus 75 ~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~--~~~~~~~~~~ 151 (188)
+|. |+|++|+..+..+.... ...++++.+|++||.+++|+|+.+|+..++..+++.+.+ ++.+..+++.
T Consensus 80 ~~~~v~F~~Fv~~ls~f~~~~--------~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~ 151 (187)
T KOG0034|consen 80 NGDPVDFEEFVRLLSVFSPKA--------SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDK 151 (187)
T ss_pred CCCccCHHHHHHHHhhhcCCc--------cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 777 99999999999988766 355799999999999999999999999999998888787 8999999999
Q ss_pred HHHHhccCCCCcccHHHHHHHHccc-cccccccccc
Q psy17263 152 TILEADQNGDQMISFDEFCKALERT-DVEQKMSIRF 186 (188)
Q Consensus 152 ~~~~~d~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~ 186 (188)
++..+|.|+||+|+++||++++.+. .....|.++|
T Consensus 152 t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 152 TFEEADTDGDGKISFEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHcCccHHHHcCCCC
Confidence 9999999999999999999999999 6667766654
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=161.72 Aligned_cols=146 Identities=30% Similarity=0.517 Sum_probs=130.9
Q ss_pred HHhcc-CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChh---HHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 17 IQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLG---DRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 17 ~~~~~-~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~---~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
+...+ ++++++++|+++|.++|++++|.|+..+|..+ ..++..+.. .+++..++. + .+.|+|.+|+.++....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~-~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-G-NETVDFPEFLTVMSVKL 85 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-C-CCccCHHHHHHHHHHHh
Confidence 44444 99999999999999999999999999999997 677777765 456777777 6 79999999999999887
Q ss_pred ccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 92 PIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
... +..+.++++|+.||.|++|+|+..+|+.++.. +|..+++++++.+ ++.++.|++|.|+|++|++
T Consensus 86 ~~~--------~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~-lge~~~deev~~l----l~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 86 KRG--------DKEEELREAFKLFDKDHDGYISIGELRRVLKS-LGERLSDEEVEKL----LKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred ccC--------CcHHHHHHHHHHhCCCCCceecHHHHHHHHHh-hcccCCHHHHHHH----HHhcCCCCCceEeHHHHHH
Confidence 655 47899999999999999999999999999999 7999999999999 9999999999999999999
Q ss_pred HHcccc
Q psy17263 172 ALERTD 177 (188)
Q Consensus 172 ~l~~~~ 177 (188)
.+....
T Consensus 153 ~~~~~~ 158 (160)
T COG5126 153 LIKDSP 158 (160)
T ss_pred HHhccC
Confidence 887654
No 3
>KOG0038|consensus
Probab=99.92 E-value=4.7e-24 Score=140.06 Aligned_cols=168 Identities=35% Similarity=0.563 Sum_probs=154.0
Q ss_pred CCCcccccCcHHHHHHHHhcc-CCHHHHHHHHHHHhhhCCCC-----C------CCcCHHHhcccccccCCChhHHHHHH
Q psy17263 1 MGNRSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGD-----C------GTLSREDFLRIPELAINPLGDRIVHV 68 (188)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~-----~------g~i~~~e~~~~~~~~~~~~~~~l~~~ 68 (188)
|||.+.. ++.+++.+++.+| +|.+++-++...|..+.++- . -+++.+.+.+++.+.-+|..++|..+
T Consensus 1 MGNK~~v-FT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~ 79 (189)
T KOG0038|consen 1 MGNKQTV-FTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEV 79 (189)
T ss_pred CCCccce-eeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHH
Confidence 8999999 9999999999999 99999999999998875431 2 25788888889999999999999999
Q ss_pred HhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 69 FFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 69 ~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
|..+| .|.++|++|+.++..++... +..-++..+|++||-|+++.|...+|...+..+....+++++++.+
T Consensus 80 FSeDG-~GnlsfddFlDmfSV~sE~A--------PrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 80 FSEDG-RGNLSFDDFLDMFSVFSEMA--------PRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred hccCC-CCcccHHHHHHHHHHHHhhC--------hHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999 99999999999999887766 5667899999999999999999999999999988889999999999
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 149 AERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 149 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
+++++...|.|+||++++.+|..++.+.+.
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 999999999999999999999999988764
No 4
>KOG0027|consensus
Probab=99.92 E-value=5.3e-24 Score=147.09 Aligned_cols=145 Identities=27% Similarity=0.498 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChh---HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLG---DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~---~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
++..++.+++.+|..+|++++|+|+..++..+ ..++..++. ..++..+|.++ +|.|++++|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg-~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDG-DGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC-CCeEcHHHHHHHHHhhhcccccc
Confidence 56788999999999999999999999999996 778888776 45788889999 99999999999998765543110
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....+.++.+|+.||.|++|+||..||+.+|.. +|...+.++++.+ ++.+|.|++|.|+|++|+.++...
T Consensus 81 ----~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~-lg~~~~~~e~~~m----i~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 81 ----EASSEELKEAFRVFDKDGDGFISASELKKVLTS-LGEKLTDEECKEM----IREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ----cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH-hCCcCCHHHHHHH----HHhcCCCCCCeEeHHHHHHHHhcC
Confidence 013569999999999999999999999999999 7999999999998 999999999999999999998753
No 5
>KOG0044|consensus
Probab=99.91 E-value=2.6e-23 Score=146.24 Aligned_cols=166 Identities=25% Similarity=0.446 Sum_probs=139.3
Q ss_pred CCCcccccCcHHHHHHHHhcc-CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCC-----hhHHHHHHHhhcCC
Q psy17263 1 MGNRSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINP-----LGDRIVHVFFEEGC 74 (188)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~-----~~~~l~~~~d~~~~ 74 (188)
||......++++.+.++...| ++++++..++.-|.. ..++|.++..+|+.++..-+.. ..+.+++.+|.++
T Consensus 1 m~~~~~~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~- 77 (193)
T KOG0044|consen 1 MGKKSNSKLQPESLEQLVQQTKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNK- 77 (193)
T ss_pred CCccccccCCcHHHHHHHHhcCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccC-
Confidence 667734449999999999999 999999999999987 5689999999999975433321 2377999999999
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHh---CC---CCCHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMV---GA---NISEEQLTSI 148 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~---~~---~~~~~~~~~~ 148 (188)
+|.|+|.||+..+....++. ..+.++++|++||.||+|+|+.+|+..++.+++ +. +..++-.+..
T Consensus 78 dg~i~F~Efi~als~~~rGt---------~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~ 148 (193)
T KOG0044|consen 78 DGTIDFLEFICALSLTSRGT---------LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEER 148 (193)
T ss_pred CCCcCHHHHHHHHHHHcCCc---------HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHH
Confidence 99999999999999999988 889999999999999999999999999988733 32 1223346677
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 149 AERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 149 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
++.+|+.+|.|+||.|+++||+......+.
T Consensus 149 v~~if~k~D~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 149 VDKIFSKMDKNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred HHHHHHHcCCCCCCcccHHHHHHHhhhCHH
Confidence 788899999999999999999999887654
No 6
>KOG0028|consensus
Probab=99.88 E-value=2.3e-21 Score=129.43 Aligned_cols=141 Identities=26% Similarity=0.460 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcc-cccccCCChhHH---HHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLR-IPELAINPLGDR---IVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~-~~~~~~~~~~~~---l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
+++++-+.++..|..||.+.+|+|+..||+. ++.+|+.+...+ ++..+|.++ .|.|+|++|...........
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~-~g~i~fe~f~~~mt~k~~e~--- 102 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEG-SGKITFEDFRRVMTVKLGER--- 102 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhcc-CceechHHHHHHHHHHHhcc---
Confidence 8889999999999999999999999999977 488999887766 777888899 99999999999877655544
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
+..+.++.+|+.+|.|++|.|+..+|+.+... +|.+++++++.++ +..+|.+++|.|+-++|..++++.
T Consensus 103 -----dt~eEi~~afrl~D~D~~Gkis~~~lkrvake-LgenltD~El~eM----IeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 103 -----DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKE-LGENLTDEELMEM----IEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -----CcHHHHHHHHHcccccCCCCcCHHHHHHHHHH-hCccccHHHHHHH----HHHhcccccccccHHHHHHHHhcC
Confidence 47899999999999999999999999999999 8999999999999 999999999999999999998764
No 7
>PTZ00183 centrin; Provisional
Probab=99.88 E-value=5.3e-21 Score=133.05 Aligned_cols=143 Identities=25% Similarity=0.465 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
+++.++.+++..|..+|.+++|+|+..+|..+ ..++.... ...++..++.++ +|.|+|.+|+..+.......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~-~g~i~~~eF~~~~~~~~~~~--- 86 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDG-SGKIDFEEFLDIMTKKLGER--- 86 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC-CCcEeHHHHHHHHHHHhcCC---
Confidence 88999999999999999999999999999996 43444332 366888889999 99999999999877543222
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.....++.+|+.+|.+++|.|+.+||..++.. .+..+++.++..+ +..+|.+++|.|+|++|..++...+
T Consensus 87 -----~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~l~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 87 -----DPREEILKAFRLFDDDKTGKISLKNLKRVAKE-LGETITDEELQEM----IDEADRNGDGEISEEEFYRIMKKTN 156 (158)
T ss_pred -----CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHhccc
Confidence 24578899999999999999999999999998 7899999999998 9999999999999999999998755
Q ss_pred c
Q psy17263 178 V 178 (188)
Q Consensus 178 ~ 178 (188)
.
T Consensus 157 ~ 157 (158)
T PTZ00183 157 L 157 (158)
T ss_pred C
Confidence 3
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.87 E-value=1.2e-20 Score=129.83 Aligned_cols=140 Identities=28% Similarity=0.501 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
++++++..++..|..+|.+++|.|+..+|..+ ..++..+. ...++..++.++ +|.|+|++|+.++.......
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l~~~~~~~--- 80 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG-NGTIDFPEFLTLMARKMKDT--- 80 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCC-CCcCcHHHHHHHHHHhccCC---
Confidence 78899999999999999999999999999986 34444433 266888889999 99999999999888654322
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.....++.+|+.+|.+++|.|+.+|+..++.. .+..++.+++..+ +..+|.+++|.|+|++|+.++..
T Consensus 81 -----~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 -----DSEEEIKEAFKVFDRDGNGFISAAELRHVMTN-LGEKLTDEEVDEM----IREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred -----cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH-HCCCCCHHHHHHH----HHhcCCCCCCcCcHHHHHHHHhc
Confidence 24568899999999999999999999999998 6888999998888 99999999999999999988753
No 9
>KOG0031|consensus
Probab=99.86 E-value=3.2e-20 Score=123.11 Aligned_cols=139 Identities=19% Similarity=0.342 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENK 100 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 100 (188)
|++.+|++++++|..+|.|++|.|..++++.+ .++|..+ .+.-+..+-... .|.|+|.-|+.++.....+.
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~Ea-~gPINft~FLTmfGekL~gt------ 97 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-SDEELDAMMKEA-PGPINFTVFLTMFGEKLNGT------ 97 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhC-CCCeeHHHHHHHHHHHhcCC------
Confidence 88999999999999999999999999999996 5666664 455567777777 89999999999999877666
Q ss_pred hchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 101 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
++++.+..+|+.||.+++|.|..+.|+.+|.. .|..+++++|+.+ ++.+-++..|.++|..|+.+++.
T Consensus 98 --dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m----~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 98 --DPEEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEM----YREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred --CHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHH----HHhCCcccCCceeHHHHHHHHHc
Confidence 58899999999999999999999999999999 7999999999999 99999999999999999999983
No 10
>KOG0030|consensus
Probab=99.82 E-value=3.1e-19 Score=116.52 Aligned_cols=141 Identities=21% Similarity=0.412 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChhHHHHHHHhhcC----CCCcccHHHHHHHHHhhcccchh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDRIVHVFFEEG----CSDRVNFRQFMQVLARFRPIKKS 96 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~~~l~~~~d~~~----~~g~i~~~ef~~~~~~~~~~~~~ 96 (188)
++++++.+++++|..||..++|.|+..+..++ +.+|.+|+..++.+...... +..+|+|++|+.++..+.+....
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 67889999999999999999999999999996 88999999888777765433 13789999999999887765422
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 97 KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 97 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
...+.+.+-.+.||++++|.|...||+++|.. +|..+++++++.+ +.- -.|.+|.|.|+.|++.+.
T Consensus 85 ------~t~edfvegLrvFDkeg~G~i~~aeLRhvLtt-lGekl~eeEVe~L----lag-~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 85 ------GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTT-LGEKLTEEEVEEL----LAG-QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred ------CcHHHHHHHHHhhcccCCcceeHHHHHHHHHH-HHhhccHHHHHHH----Hcc-ccccCCcCcHHHHHHHHh
Confidence 36778888999999999999999999999999 7999999999987 443 347789999999998764
No 11
>KOG0037|consensus
Probab=99.76 E-value=4.2e-17 Score=114.74 Aligned_cols=131 Identities=20% Similarity=0.341 Sum_probs=115.3
Q ss_pred HHHHHHHHHhhhCCCCCCCcCHHHhcccccc----cCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhh
Q psy17263 26 QIERLYSRFTSLDRGDCGTLSREDFLRIPEL----AINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENK 100 (188)
Q Consensus 26 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~----~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 100 (188)
....+...|...|++.+|+|+.+|+..++.. .+++ ++.-++..+|.+. +|+|++.||..++.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~-~G~i~f~EF~~Lw~------------ 121 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDN-SGTIGFKEFKALWK------------ 121 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCC-CCccCHHHHHHHHH------------
Confidence 3457888999999999999999999997542 3333 3466899999999 99999999999999
Q ss_pred hchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 101 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
....++.+|+.||.|++|.|+..||+.+|.. +|..+++.-++-+ ++.+|....|.|.+++|+.++....
T Consensus 122 ---~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~-~Gy~Lspq~~~~l----v~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 122 ---YINQWRNVFRTYDRDRSGTIDSSELRQALTQ-LGYRLSPQFYNLL----VRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred ---HHHHHHHHHHhcccCCCCcccHHHHHHHHHH-cCcCCCHHHHHHH----HHHhccccCCceeHHHHHHHHHHHH
Confidence 6789999999999999999999999999999 7999999988888 8999988799999999999887653
No 12
>KOG0036|consensus
Probab=99.62 E-value=1.3e-14 Score=110.82 Aligned_cols=136 Identities=21% Similarity=0.339 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCC-C---hhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAIN-P---LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKS 96 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~-~---~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~ 96 (188)
..++.-.+++..|..+|.+++|.++..++.+. ..+... + ....++..+|.+. +|.++|.+|.+++..
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~-dg~vDy~eF~~Y~~~------- 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANR-DGRVDYSEFKRYLDN------- 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCc-CCcccHHHHHHHHHH-------
Confidence 55666678999999999999999999999974 233222 2 2367999999999 999999999999984
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 97 KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 97 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.+..+..+|..+|.++||.|..+|+...|+. +|.+++++++..+ ++.+|+++++.|+++||...+.-.
T Consensus 80 -------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~-~gi~l~de~~~k~----~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 80 -------KELELYRIFQSIDLEHDGKIDPNEIWRYLKD-LGIQLSDEKAAKF----FEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred -------hHHHHHHHHhhhccccCCccCHHHHHHHHHH-hCCccCHHHHHHH----HHHhccCCCeeeccHHHHhhhhcC
Confidence 7889999999999999999999999999999 7999999999988 999999999999999999988766
Q ss_pred c
Q psy17263 177 D 177 (188)
Q Consensus 177 ~ 177 (188)
+
T Consensus 148 p 148 (463)
T KOG0036|consen 148 P 148 (463)
T ss_pred C
Confidence 5
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.57 E-value=2e-14 Score=85.33 Aligned_cols=66 Identities=39% Similarity=0.619 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 173 (188)
+++.+|+.+|.|++|+|+.+||+.++.. ++...++.++..++..+++.+|.|++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKH-LGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH-TTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4789999999999999999999999999 78888888899999999999999999999999999875
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=6.7e-13 Score=82.80 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 103 SREQKLKFAFKMYDL-DNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~-~~~G~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.....+..+|+.||+ +++|+|+..||+.++..-++..++. ++++.+ ++.+|.|+||.|+|+||+.++....
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 356789999999999 9999999999999999844767777 788888 9999999999999999999987754
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=2.2e-12 Score=106.04 Aligned_cols=128 Identities=20% Similarity=0.330 Sum_probs=102.7
Q ss_pred cCcHHHHHHHHhc--c-CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-cccc-CCChh------HHHHHHHhhcCCCC
Q psy17263 8 LLREEEIAQIQEE--T-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELA-INPLG------DRIVHVFFEEGCSD 76 (188)
Q Consensus 8 ~~~~~~~~~~~~~--~-~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~-~~~~~------~~l~~~~d~~~~~g 76 (188)
.+++.++..+... + ++.++++++++.|..+|++++|.+ +..+ ..++ ..+.. ++++..+|.++ +|
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dg-dG 194 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDE-DG 194 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-CC
Confidence 3778888888887 5 999999999999999999999997 4443 4455 24433 46788899999 99
Q ss_pred cccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH------------HhCCCCCH-H
Q psy17263 77 RVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM------------MVGANISE-E 143 (188)
Q Consensus 77 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~------------~~~~~~~~-~ 143 (188)
.|+++||+.++..+.... ..+.++.+|+.+|.|++|+|+.+||+.++.. +++..++. +
T Consensus 195 ~IdfdEFl~lL~~lg~~~---------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~ 265 (644)
T PLN02964 195 QLSFSEFSDLIKAFGNLV---------AANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSD 265 (644)
T ss_pred eEcHHHHHHHHHHhccCC---------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchh
Confidence 999999999998654333 6778999999999999999999999999887 13555665 5
Q ss_pred HHHHHH
Q psy17263 144 QLTSIA 149 (188)
Q Consensus 144 ~~~~~~ 149 (188)
+...++
T Consensus 266 ~~~~ii 271 (644)
T PLN02964 266 KLNAMI 271 (644)
T ss_pred hHHHHH
Confidence 566665
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=5.4e-12 Score=78.80 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYD-LDNDD-AISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.....++.+|+.|| .+++| .|+.+||+.+|+. .++...++.+++.+ ++.+|.|++|+|+|++|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV----METLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999998 79999 6999999999997 45888899999999 999999999999999999988754
No 17
>KOG0037|consensus
Probab=99.34 E-value=3.1e-11 Score=85.39 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=114.3
Q ss_pred CcccccCcHHHHHHHHhcc-CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHH
Q psy17263 3 NRSSLLLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFR 81 (188)
Q Consensus 3 ~~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ 81 (188)
...|..++..++....... .+.--++.++-+...||.+++|+|..+||..+....... ..++..+|.|+ +|+|+..
T Consensus 68 ~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~W--r~vF~~~D~D~-SG~I~~s 144 (221)
T KOG0037|consen 68 RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQW--RNVFRTYDRDR-SGTIDSS 144 (221)
T ss_pred ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHH--HHHHHhcccCC-CCcccHH
Confidence 3456668888888877644 444455666666777888999999999999874332211 66899999999 9999999
Q ss_pred HHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCC
Q psy17263 82 QFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD 161 (188)
Q Consensus 82 ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 161 (188)
|+...+..+--.- +.+....+++.||.-++|.|..++|.+++-.+ ..+.+. |+..|.+..
T Consensus 145 EL~~Al~~~Gy~L---------spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~----Fr~~D~~q~ 204 (221)
T KOG0037|consen 145 ELRQALTQLGYRL---------SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEA----FRRRDTAQQ 204 (221)
T ss_pred HHHHHHHHcCcCC---------CHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHH----HHHhccccc
Confidence 9999998776554 67788889999998889999999999988763 223444 899998887
Q ss_pred Cc--ccHHHHHHHHc
Q psy17263 162 QM--ISFDEFCKALE 174 (188)
Q Consensus 162 g~--i~~~ef~~~l~ 174 (188)
|. |+|++|+.+..
T Consensus 205 G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 205 GSITISYDDFLQMTM 219 (221)
T ss_pred eeEEEeHHHHHHHhh
Confidence 76 78999987653
No 18
>KOG2562|consensus
Probab=99.27 E-value=3.7e-11 Score=93.35 Aligned_cols=140 Identities=16% Similarity=0.245 Sum_probs=112.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChhHHHHHHHh----hcCCCCcccHHHHHHHHHhhcccchh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDRIVHVFF----EEGCSDRVNFRQFMQVLARFRPIKKS 96 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~~~l~~~~d----~~~~~g~i~~~ef~~~~~~~~~~~~~ 96 (188)
+|-+.-..+...|..+|++++|.|+..++... -........++||..+. ... +|+++|++|+-++.......
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~-eGrmdykdFv~FilA~e~k~-- 348 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKV-EGRMDYKDFVDFILAEEDKD-- 348 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeee-cCcccHHHHHHHHHHhccCC--
Confidence 78888888888899999999999999999986 33333445577777332 344 78999999999999877666
Q ss_pred hhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 97 KENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 97 ~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
....++..|+.+|.+++|.|+..|++.+... |...+..+--++.++++|+..+.+...++|+.++|..
T Consensus 349 -------t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 -------TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred -------CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 6789999999999999999999999977654 2233333344567778889999999999999999987
No 19
>KOG0044|consensus
Probab=99.27 E-value=3.8e-11 Score=84.89 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=98.9
Q ss_pred CcccccCcHHHHHHHHhccCC-HHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCChh----HHHHHHHhhcCCCCc
Q psy17263 3 NRSSLLLREEEIAQIQEETVT-PNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLG----DRIVHVFFEEGCSDR 77 (188)
Q Consensus 3 ~~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~----~~l~~~~d~~~~~g~ 77 (188)
.++++.++.+++..+.+..++ -+.-.....+|+.+|.+++|.|+..||...+++...-.. .-.|..+|.++ +|.
T Consensus 38 ~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dg-dG~ 116 (193)
T KOG0044|consen 38 ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDG-DGY 116 (193)
T ss_pred cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCC-Cce
Confidence 466777889999999998854 444455667799999999999999998886544333222 22588999999 999
Q ss_pred ccHHHHHHHHHhhcccchhh--hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 78 VNFRQFMQVLARFRPIKKSK--ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 78 i~~~ef~~~~~~~~~~~~~~--~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
|+++|++.++.......... ........+....+|..+|.|++|.||.+||...+..
T Consensus 117 It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 117 ITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred EcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999998876643322110 1223347789999999999999999999999988764
No 20
>PTZ00183 centrin; Provisional
Probab=99.27 E-value=1.2e-10 Score=80.77 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=83.0
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
..+|..+|.++ +|.|++.+|..++....... ....+..+|..+|.+++|.|+..||..++..........
T Consensus 20 ~~~F~~~D~~~-~G~i~~~e~~~~l~~~g~~~---------~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 89 (158)
T PTZ00183 20 REAFDLFDTDG-SGTIDPKELKVAMRSLGFEP---------KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR 89 (158)
T ss_pred HHHHHHhCCCC-CCcccHHHHHHHHHHhCCCC---------CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH
Confidence 55788889999 99999999999887653222 456799999999999999999999999887633445556
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
..+..+ |+.+|.+++|.|+.++|..++...
T Consensus 90 ~~l~~~----F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 90 EEILKA----FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHH----HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 666666 999999999999999999999754
No 21
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=4.3e-11 Score=75.69 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYD-LDNDD-AISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.....+..+|..|| +|++| +|+..||+.++.... +...++.+++.+ ++.+|.|++|.|+|+||+.++...
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45678889999998 78998 599999999997632 334467788888 999999999999999999998765
Q ss_pred c
Q psy17263 177 D 177 (188)
Q Consensus 177 ~ 177 (188)
.
T Consensus 83 ~ 83 (93)
T cd05026 83 T 83 (93)
T ss_pred H
Confidence 3
No 22
>KOG0377|consensus
Probab=99.26 E-value=8e-11 Score=91.10 Aligned_cols=142 Identities=21% Similarity=0.319 Sum_probs=104.3
Q ss_pred HHHHHHHHhhhCCCCCCCcCHHHhcccc----cccCCChhHHHHH--HHhhcCCCCcccHHHHHHHHHhhcccch---hh
Q psy17263 27 IERLYSRFTSLDRGDCGTLSREDFLRIP----ELAINPLGDRIVH--VFFEEGCSDRVNFRQFMQVLARFRPIKK---SK 97 (188)
Q Consensus 27 ~~~l~~~F~~~D~~~~g~i~~~e~~~~~----~~~~~~~~~~l~~--~~d~~~~~g~i~~~ef~~~~~~~~~~~~---~~ 97 (188)
..++...|+.+|.+.+|+|+.+.+..+. .++.. .++++ ....+. +|.+.|......+..-..... ..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP---Wr~L~~kla~~s~-d~~v~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP---WRLLRPKLANGSD-DGKVEYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc---HHHhhhhccCCCc-CcceehHhHHHHhhhhhHHHHHHhHH
Confidence 3568888999999999999999998853 33332 22222 122344 778888888776654222111 01
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM---VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
-+.+......+..+|+.+|.|++|.|+.+||+.+...+ ....+++.++.++ .+.+|.|+||.|++.||+++++
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHh
Confidence 23344556788899999999999999999999987652 2457788888888 9999999999999999999987
Q ss_pred cc
Q psy17263 175 RT 176 (188)
Q Consensus 175 ~~ 176 (188)
-.
T Consensus 615 lv 616 (631)
T KOG0377|consen 615 LV 616 (631)
T ss_pred hh
Confidence 54
No 23
>KOG4223|consensus
Probab=99.26 E-value=4.8e-11 Score=88.99 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCCh-----hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhh
Q psy17263 26 QIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPL-----GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENK 100 (188)
Q Consensus 26 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~-----~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 100 (188)
-+..-+..|+.-|.|++|.+|.+||..++.=--.+- ..+-+.-.|+++ +|.|+++||+.-+..-.+.... ..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~-DG~I~~eEfigd~~~~~~~~~e-pe- 237 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNG-DGKISLEEFIGDLYSHEGNEEE-PE- 237 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCC-CCceeHHHHHhHHhhccCCCCC-cc-
Confidence 456677889999999999999999999633211221 245567788999 9999999999877654432100 01
Q ss_pred hchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 101 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
+....-...+..+|+|++|+++.+|++..+.. .+......+...+ +-..|.|+||++|++|-+.
T Consensus 238 --Wv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P-~~~d~A~~EA~hL----~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 238 --WVLTEREQFFEFRDKNKDGKLDGDELLDWILP-SEQDHAKAEARHL----LHEADEDKDGKLSKEEILE 301 (325)
T ss_pred --cccccHHHHHHHhhcCCCCccCHHHHhcccCC-CCccHHHHHHHHH----hhhhccCccccccHHHHhh
Confidence 12233345677889999999999999987755 4555556666666 9999999999999998764
No 24
>KOG4223|consensus
Probab=99.26 E-value=1.1e-10 Score=87.17 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=119.6
Q ss_pred ccCcHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccccc-------CCC-----------hhHHHHHH
Q psy17263 7 LLLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELA-------INP-----------LGDRIVHV 68 (188)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~-------~~~-----------~~~~l~~~ 68 (188)
+.++..++...+..+....-..+..+.|..+|++.+|.|+.++.+....-. ... -.++-|++
T Consensus 92 gfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~ 171 (325)
T KOG4223|consen 92 GFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKA 171 (325)
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhh
Confidence 346777888777765555556677888999999999999999998853211 000 01457889
Q ss_pred HhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 69 FFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 69 ~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.|.++ +|.++.+||..++..-.... ...-.+++...-.|+|++|+|+.+|+..-+....+....++.+..-
T Consensus 172 AD~d~-dg~lt~EEF~aFLHPEe~p~--------M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 172 ADQDG-DGSLTLEEFTAFLHPEEHPH--------MKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred cccCC-CCcccHHHHHhccChhhcch--------HHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 99999 99999999999998754433 3455677888899999999999999998877644433333333222
Q ss_pred HHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 149 AERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 149 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
-.++....|.|+||+++-+|...++....
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~ 271 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSE 271 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCC
Confidence 23338889999999999999999887754
No 25
>KOG0027|consensus
Probab=99.26 E-value=8.2e-11 Score=81.24 Aligned_cols=101 Identities=26% Similarity=0.388 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCC--
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANI-- 140 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-- 140 (188)
.++|..+|.++ +|.|+-.++-.++..+.... ....+..++..+|.+++|.|+.+||..++.. .....
T Consensus 11 ~~~F~~fD~d~-~G~i~~~el~~~lr~lg~~~---------t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~-~~~~~~~ 79 (151)
T KOG0027|consen 11 KEAFQLFDKDG-DGKISVEELGAVLRSLGQNP---------TEEELRDLIKEIDLDGDGTIDFEEFLDLMEK-LGEEKTD 79 (151)
T ss_pred HHHHHHHCCCC-CCcccHHHHHHHHHHcCCCC---------CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHh-hhccccc
Confidence 56899999999 99999999999999887665 7889999999999999999999999999987 33322
Q ss_pred ---CHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 141 ---SEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 141 ---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
+.+++.+. |+.+|.|++|.|+++++..+|.....
T Consensus 80 ~~~~~~el~ea----F~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 80 EEASSEELKEA----FRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred ccccHHHHHHH----HHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 23466666 99999999999999999999987643
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.25 E-value=5.5e-11 Score=74.24 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 103 SREQKLKFAFKMYDL-DN-DDAISRDELLAVLHMM--VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.....+-.+|..||. ++ +|+|+.+||+.++... +|..+++++++++ ++.+|.|++|+|+|++|+.++....
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 356678889999998 67 8999999999999731 5888999999999 9999999999999999999987643
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.23 E-value=2.3e-10 Score=78.44 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=81.6
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
...|..+|.++ +|.|++++|..++....... ....+..+|+.+|.+++|.|+.++|..++..........
T Consensus 14 ~~~F~~~D~~~-~G~i~~~e~~~~l~~~~~~~---------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 14 KEAFSLFDKDG-DGTITTKELGTVMRSLGQNP---------TEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHcCCC-CCcCCHHHHHHHHHHhCCCC---------CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHH
Confidence 45788889999 99999999999886553322 456889999999999999999999999987633334444
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
..+..+ |..+|.+++|.|+.++|..++...
T Consensus 84 ~~~~~~----F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 84 EEIKEA----FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHH----HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 555555 999999999999999999998653
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.22 E-value=9.8e-11 Score=74.00 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYD-LDNDD-AISRDELLAVLHMMVG----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D-~~~~G-~I~~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
...+.++.+|..|| .+++| .|+..||+.+|...+| ..+++.+++.+ +..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHHH
Confidence 35678999999997 99999 5999999999975233 34678888888 999999999999999999998875
Q ss_pred c
Q psy17263 177 D 177 (188)
Q Consensus 177 ~ 177 (188)
.
T Consensus 82 ~ 82 (92)
T cd05025 82 T 82 (92)
T ss_pred H
Confidence 4
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.21 E-value=7.9e-11 Score=74.74 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 104 REQKLKFAFKMYDL-DN-DDAISRDELLAVLHMM----VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 104 ~~~~~~~~F~~~D~-~~-~G~I~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
....+..+|..||. |+ +|.|+.+||+.++... ++..+++.++..+ ++.+|.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46789999999997 97 7999999999999852 2567788888888 9999999999999999999988754
Q ss_pred c
Q psy17263 178 V 178 (188)
Q Consensus 178 ~ 178 (188)
+
T Consensus 82 ~ 82 (94)
T cd05031 82 I 82 (94)
T ss_pred H
Confidence 4
No 30
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.20 E-value=3.9e-10 Score=77.24 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
.+.|..+|.++ +|.|++.++..++..+.... +...+.++|..+|. ++|.|+..+|..+|.......-+.
T Consensus 23 keaF~l~D~d~-~G~I~~~el~~ilr~lg~~~---------s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~ 91 (160)
T COG5126 23 KEAFQLFDRDS-DGLIDRNELGKILRSLGFNP---------SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE 91 (160)
T ss_pred HHHHHHhCcCC-CCCCcHHHHHHHHHHcCCCC---------cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence 45688899999 99999999999998665555 78899999999999 999999999999999866677778
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
+++... |+.+|.|++|+|+..+++.++...
T Consensus 92 Eel~~a----F~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 92 EELREA----FKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHH----HHHhCCCCCceecHHHHHHHHHhh
Confidence 888888 999999999999999999999854
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=1.3e-10 Score=72.78 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYDL--DNDDAISRDELLAVLHMMVGANI----SEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~--~~~G~I~~~el~~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.....++.+|..||. +++|.|+.+||..++....+..+ +..++..+ +..+|.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 356789999999999 89999999999999976345443 47788888 999999999999999999998865
Q ss_pred c
Q psy17263 177 D 177 (188)
Q Consensus 177 ~ 177 (188)
.
T Consensus 81 ~ 81 (88)
T cd00213 81 A 81 (88)
T ss_pred H
Confidence 4
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.15 E-value=2.6e-10 Score=67.54 Aligned_cols=61 Identities=30% Similarity=0.336 Sum_probs=54.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 109 KFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 109 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
+.+|..+|.+++|.|+.+|++.++.. .+ .+.+++..+ +..+|.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~-~g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK-SG--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH-cC--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999988 55 478888888 999999999999999999988653
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.15 E-value=3.4e-10 Score=72.08 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....++.+|..+|.+++|.|+.+|++.++.. .+ ++++++..+ +..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLK-SG--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-cC--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5678999999999999999999999999987 44 788888888 999999999999999999887654
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.14 E-value=1.9e-10 Score=65.23 Aligned_cols=52 Identities=38% Similarity=0.662 Sum_probs=48.1
Q ss_pred CCCcccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 119 NDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.+|.|+.++|+.+|.. +|.. ++++++..+ +..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999966 7999 999999999 99999999999999999999864
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.13 E-value=5.6e-10 Score=69.81 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKM-YDLDNDD-AISRDELLAVLHMMV----GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~-~D~~~~G-~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.....+..+|.. +|++|+| +|+.+||+.++...+ +...++.+++.+ ++.+|.|+||.|+|+||+.++...
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHH
Confidence 466788999999 6788876 999999999998732 345667888888 999999999999999999998765
Q ss_pred c
Q psy17263 177 D 177 (188)
Q Consensus 177 ~ 177 (188)
.
T Consensus 82 ~ 82 (89)
T cd05023 82 A 82 (89)
T ss_pred H
Confidence 3
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.07 E-value=1.3e-09 Score=63.04 Aligned_cols=62 Identities=42% Similarity=0.723 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
+..+|..+|.+++|.|+.+|+..++.. .+...+...+..+ +..++.+++|.|++++|+.++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKS-LGEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHhC
Confidence 567899999999999999999999998 7888999988888 9999999999999999998763
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.06 E-value=1.3e-09 Score=71.39 Aligned_cols=63 Identities=22% Similarity=0.379 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
....+..+|..+|.|++|.|+.+||..+. ....+..+..+ +..+|.|+||.||++||+..+.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f----~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPF----FESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHH----HHHHCCCCCCCCCHHHHHHHHhC
Confidence 56789999999999999999999999865 12334445555 99999999999999999999944
No 38
>KOG2643|consensus
Probab=99.06 E-value=1.5e-09 Score=84.01 Aligned_cols=152 Identities=22% Similarity=0.418 Sum_probs=113.9
Q ss_pred CCcccccCcHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-cccc-CCChh-----HHHHHHHhhcCC
Q psy17263 2 GNRSSLLLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELA-INPLG-----DRIVHVFFEEGC 74 (188)
Q Consensus 2 g~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~-~~~~~-----~~l~~~~d~~~~ 74 (188)
|...+++|+-.++.+.+++ | +.+-+.--|..+|+..+|.|+..+|..+ +... .+... +++-+.+...
T Consensus 296 G~rg~~kLs~deF~~F~e~-L---q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-- 369 (489)
T KOG2643|consen 296 GKRGNGKLSIDEFLKFQEN-L---QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-- 369 (489)
T ss_pred ccCCCccccHHHHHHHHHH-H---HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC--
Confidence 5666778999999888885 2 3444556699999999999999999994 3322 22222 2233333322
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 154 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (188)
...|++.||..++..+.... .+..+...|- .-.+.|+..+|+++...+.|.++++..++-+ |.
T Consensus 370 ~~gISl~Ef~~Ff~Fl~~l~------------dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvv----F~ 432 (489)
T KOG2643|consen 370 GKGISLQEFKAFFRFLNNLN------------DFDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVV----FT 432 (489)
T ss_pred CCCcCHHHHHHHHHHHhhhh------------HHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeE----EE
Confidence 34699999999998775444 4445555552 4456899999999999989999999877777 99
Q ss_pred HhccCCCCcccHHHHHHHHccc
Q psy17263 155 EADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 155 ~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.+|.|+||.++++||+.++.+-
T Consensus 433 IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 433 IFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred EEccCCCCcccHHHHHHHHHHH
Confidence 9999999999999999998764
No 39
>PF14658 EF-hand_9: EF-hand domain
Probab=99.03 E-value=1.3e-09 Score=63.11 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=56.5
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHcc
Q psy17263 110 FAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGD-QMISFDEFCKALER 175 (188)
Q Consensus 110 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~ 175 (188)
.+|.+||.++.|.|...++..+|+++.+..+++.+++.+ ...+|+++. |.|+++.|+.+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999954449999999999 999999997 99999999999875
No 40
>KOG0028|consensus
Probab=99.00 E-value=7.5e-09 Score=69.85 Aligned_cols=101 Identities=9% Similarity=0.174 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
+.-+..|+.++ +|.|+++|+......+.- .+..+.+..+..-+|++++|.|+.++|+.++...++..-+.
T Consensus 36 ~e~f~lfd~~~-~g~iD~~EL~vAmralGF---------E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 36 KEAFELFDPDM-AGKIDVEELKVAMRALGF---------EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred HHHHHhhccCC-CCcccHHHHHHHHHHcCC---------CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 45788899999 999999999655554322 23567888899999999999999999999998767877799
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
+++... |+.+|-|++|+|++.+|+.+.....
T Consensus 106 eEi~~a----frl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 106 EEIKKA----FRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHHH----HHcccccCCCCcCHHHHHHHHHHhC
Confidence 999988 9999999999999999999887654
No 41
>KOG0040|consensus
Probab=98.98 E-value=1.5e-08 Score=88.38 Aligned_cols=136 Identities=17% Similarity=0.283 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC----------hhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP----------LGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~----------~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
.|++++.++.-+|..||++.+|+++..+|..+ .++|.+. .-++++..+|++. +|.|+..+|+.++...
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r-~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNR-DGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCC-cCcccHHHHHHHHHhc
Confidence 99999999999999999999999999999996 5666543 3367999999999 9999999999999876
Q ss_pred cccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC----CCCcccH
Q psy17263 91 RPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN----GDQMISF 166 (188)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~ 166 (188)
...+.. ....+..+|+.+|. +..+|+..++.. ++++++.+.++.+|-..+++. -.+.+.|
T Consensus 2326 ETeNI~-------s~~eIE~AfraL~a-~~~yvtke~~~~--------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y 2389 (2399)
T KOG0040|consen 2326 ETENIL-------SSEEIEDAFRALDA-GKPYVTKEELYQ--------NLTREQAEFCMSKMKPYAETSSGRSDQVALDY 2389 (2399)
T ss_pred cccccc-------chHHHHHHHHHhhc-CCccccHHHHHh--------cCCHHHHHHHHHHhhhhcccccCCCccccccH
Confidence 554311 23489999999998 888999998874 367788888888888888874 3456999
Q ss_pred HHHHHHHc
Q psy17263 167 DEFCKALE 174 (188)
Q Consensus 167 ~ef~~~l~ 174 (188)
.+|.+.+-
T Consensus 2390 ~dfv~sl~ 2397 (2399)
T KOG0040|consen 2390 KDFVNSLF 2397 (2399)
T ss_pred HHHHHHHh
Confidence 99988764
No 42
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.95 E-value=4.7e-09 Score=65.63 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 104 REQKLKFAFKMYDLD--NDDAISRDELLAVLHMMVGANIS----EEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~--~~G~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
....+...|..|+.. ++|.|+.+||+.++...++..++ +.++..+ +..+|.+++|.|+|++|+.++....
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 567788899999865 48999999999999753565565 7888888 9999999999999999999987653
No 43
>KOG4666|consensus
Probab=98.95 E-value=4.2e-09 Score=78.75 Aligned_cols=161 Identities=13% Similarity=0.171 Sum_probs=122.6
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHHhhhCC-CCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 12 EEIAQIQEET-VTPNQIERLYSRFTSLDR-GDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~l~~~F~~~D~-~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
.++..+.+.. +....+..=-..+....+ .+.+.|-..+|..-+.+......+.+|..||..+ +|.++|.+.+..+..
T Consensus 209 ~eF~~~~r~lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~-tg~~D~re~v~~lav 287 (412)
T KOG4666|consen 209 PEFVAKRRVLKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGT-TGNGDYRETVKTLAV 287 (412)
T ss_pred HHHHHHHhccCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchhhhhhhhhheecCCC-CCcccHHHHhhhhee
Confidence 4556666655 665555433333333222 4567888888887666666666688999999999 999999999999998
Q ss_pred hcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHH
Q psy17263 90 FRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEF 169 (188)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 169 (188)
+++.. .....++.+|+.|+.+.||.++..+|--+|+..+| +.+-.+-.+ |...+...+|+|+|++|
T Consensus 288 lc~p~--------~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~l----f~~i~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 288 LCGPP--------VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVL----FPSIEQKDDPKIYASNF 353 (412)
T ss_pred eeCCC--------CcHHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeecccc----chhhhcccCcceeHHHH
Confidence 88766 46789999999999999999999999999987544 444445566 89999999999999999
Q ss_pred HHHHcccccccccccccc
Q psy17263 170 CKALERTDVEQKMSIRFL 187 (188)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~ 187 (188)
.++....+..-+....||
T Consensus 354 ~~fa~~~p~~a~~~~~yl 371 (412)
T KOG4666|consen 354 RKFAATEPNLALSELGYL 371 (412)
T ss_pred HHHHHhCchhhhhhhccc
Confidence 999998876655444444
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.94 E-value=1e-08 Score=84.75 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=76.5
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHH
Q psy17263 64 RIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEE 143 (188)
Q Consensus 64 ~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~ 143 (188)
+.|..+|+++ +|.+ +......+... ... . .....++.+|..+|.|++|.|+.+||..++.. ++...+++
T Consensus 147 eaF~lfD~dg-dG~i-Lg~ilrslG~~-~pt--e-----~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg~~~seE 215 (644)
T PLN02964 147 ESFDLLDPSS-SNKV-VGSIFVSCSIE-DPV--E-----TERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FGNLVAAN 215 (644)
T ss_pred HHHHHHCCCC-CCcC-HHHHHHHhCCC-CCC--H-----HHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hccCCCHH
Confidence 3588888999 9987 33333333210 011 0 12234899999999999999999999999998 68778888
Q ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 144 QLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
++..+ |+.+|.|++|.|+++||..++...
T Consensus 216 EL~ea----Fk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 216 KKEEL----FKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHH----HHHhCCCCCCcCCHHHHHHHHHhc
Confidence 88888 999999999999999999999884
No 45
>KOG0034|consensus
Probab=98.90 E-value=3.5e-08 Score=69.84 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=87.5
Q ss_pred cccCcHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCC-cCHHHhcccccccCCChhHH-----HHHHHhhcCCCCccc
Q psy17263 6 SLLLREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGT-LSREDFLRIPELAINPLGDR-----IVHVFFEEGCSDRVN 79 (188)
Q Consensus 6 s~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~-i~~~e~~~~~~~~~~~~~~~-----l~~~~d~~~~~g~i~ 79 (188)
++.++.+++..+.....++- ...++..++.+++|. |++++|.+.+..-......+ .++.||.++ +|.|+
T Consensus 48 ~g~lt~eef~~i~~~~~Np~----~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~-~G~I~ 122 (187)
T KOG0034|consen 48 DGYLTKEEFLSIPELALNPL----ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDG-DGFIS 122 (187)
T ss_pred cCccCHHHHHHHHHHhcCcH----HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCC-CCcCc
Confidence 34456666666653222222 234567777888887 99999999766544443333 799999999 99999
Q ss_pred HHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 80 FRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 80 ~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
.+++...+..+....... .......-+...|..+|.|++|.|+.+|+..++..
T Consensus 123 reel~~iv~~~~~~~~~~--~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 123 REELKQILRMMVGENDDM--SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHHHccCCcc--hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 999999998877644110 01124567778999999999999999999999865
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.87 E-value=8.1e-09 Score=65.74 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
+|++++..++.+|..+|++++|.|+..++..+ ...+... ...+++..++.++ +|.|+|++|+.++....
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~-~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDN-DGELDKDEFALAMHLIY 74 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHHHH
Confidence 68899999999999999999999999999996 4444432 2367899999999 99999999999887643
No 47
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.84 E-value=2.3e-08 Score=58.99 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy17263 64 RIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL 132 (188)
Q Consensus 64 ~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 132 (188)
++|..+|.++ +|.|+.+||..++......... ......+..+|+.+|.|++|.|+.+||..++
T Consensus 4 ~~F~~~D~d~-~G~i~~~el~~~~~~~~~~~~~-----~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 4 EAFKKFDKDG-DGYISKEELRRALKHLGRDMSD-----EESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHSTTS-SSEEEHHHHHHHHHHTTSHSTH-----HHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHcCCc-cCCCCHHHHHHHHHHhcccccH-----HHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4566666666 6666666666666655432200 0245577778999999999999999988764
No 48
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.83 E-value=1e-08 Score=64.01 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhCC-CCCCCcCHHHhccc-cc-ccCC----ChhHHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 24 PNQIERLYSRFTSLDR-GDCGTLSREDFLRI-PE-LAIN----PLGDRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 24 ~~~~~~l~~~F~~~D~-~~~g~i~~~e~~~~-~~-~~~~----~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
+..+..+..+|..||+ +++|+|+..||+.+ .. ++.. ...+.+++.+|.++ +|.|+|+||+.++..+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~-DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQ-DSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHH
Confidence 3467889999999999 99999999999996 33 4421 23577899999999 99999999999888653
No 49
>KOG4251|consensus
Probab=98.82 E-value=2.1e-08 Score=72.37 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHhhhCCCCCCCcCHHHhcc-cccccCCC------hhHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 28 ERLYSRFTSLDRGDCGTLSREDFLR-IPELAINP------LGDRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 28 ~~l~~~F~~~D~~~~g~i~~~e~~~-~~~~~~~~------~~~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
..++.+|.+.|.+.+|.||..|+++ ++...... .++-.|+++|+++ +|.|.|+||...+..
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdg-DGhvsWdEykvkFla 168 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDG-DGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCC-CCceehhhhhhHHHh
Confidence 4566777777777777777777766 33221111 1133566667777 777777777655544
No 50
>KOG2643|consensus
Probab=98.81 E-value=7.4e-08 Score=74.83 Aligned_cols=131 Identities=18% Similarity=0.341 Sum_probs=97.0
Q ss_pred HHHHHHHhhhCCCCCCCcCHHHhcccccccCCC--------------------hhHH-HHHHHhhcCCCCcccHHHHHHH
Q psy17263 28 ERLYSRFTSLDRGDCGTLSREDFLRIPELAINP--------------------LGDR-IVHVFFEEGCSDRVNFRQFMQV 86 (188)
Q Consensus 28 ~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~--------------------~~~~-l~~~~d~~~~~g~i~~~ef~~~ 86 (188)
..+.-+|+.||.|++|-|+.+||..+.++.... .... +...|.+++ ++++++++|+.+
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg-~~kLs~deF~~F 311 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRG-NGKLSIDEFLKF 311 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCC-CccccHHHHHHH
Confidence 456778999999999999999998854321110 0022 344556788 999999999999
Q ss_pred HHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccH
Q psy17263 87 LARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISF 166 (188)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 166 (188)
...+ ..+-++.-|..+|+..+|.|+..+|...|-...+.+. +.-+.+..+.-+.++.+ +..||+
T Consensus 312 ~e~L-------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~--~~k~~~lkrvk~kf~~~-~~gISl 375 (489)
T KOG2643|consen 312 QENL-------------QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNS--KKKHKYLKRVKEKFKDD-GKGISL 375 (489)
T ss_pred HHHH-------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccch--HhHHHHHHHHHHhccCC-CCCcCH
Confidence 9977 6788888999999999999999999999877433333 33344445557777665 445999
Q ss_pred HHHHHHHcc
Q psy17263 167 DEFCKALER 175 (188)
Q Consensus 167 ~ef~~~l~~ 175 (188)
+||.++.+=
T Consensus 376 ~Ef~~Ff~F 384 (489)
T KOG2643|consen 376 QEFKAFFRF 384 (489)
T ss_pred HHHHHHHHH
Confidence 999887653
No 51
>KOG0031|consensus
Probab=98.75 E-value=1e-07 Score=63.98 Aligned_cols=72 Identities=25% Similarity=0.349 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH-----------------------------HHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI-----------------------------AERTIL 154 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~-----------------------------~~~~~~ 154 (188)
..+.++++|.++|.|++|.|.+++|+..+.. +|...++++++.+ +...|+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~ 108 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS-LGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFK 108 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999 7888888888776 335677
Q ss_pred HhccCCCCcccHHHHHHHHccc
Q psy17263 155 EADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 155 ~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.+|.+++|.|.-+.+..+|...
T Consensus 109 ~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 109 TFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred hcCccCCCccCHHHHHHHHHHh
Confidence 7888888888888888888764
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.75 E-value=3.5e-08 Score=61.58 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhC-CCCCC-CcCHHHhcccc-c-----ccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 25 NQIERLYSRFTSLD-RGDCG-TLSREDFLRIP-E-----LAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 25 ~~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~~-~-----~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
..+..++.+|..|| ++++| .|+..+|+.++ . ++..+. .+++++.+|.++ +|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~-dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDG-DGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCC-CCcCcHHHHHHHHHHH
Confidence 46788999999998 79999 59999999974 3 454443 367899999999 9999999999888754
No 53
>KOG0041|consensus
Probab=98.74 E-value=7.1e-08 Score=67.55 Aligned_cols=68 Identities=29% Similarity=0.392 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....+..+|+.||.+.||+|+..||+.+|.. +|..-+.--++++ ++.+|.|.+|+|++-+|+-+++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~m----ikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHH----HHHhhcccccchhHHHHHHHHHHH
Confidence 5678889999999999999999999999999 7988887778888 999999999999999999888764
No 54
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.67 E-value=6.8e-08 Score=61.01 Aligned_cols=65 Identities=17% Similarity=0.330 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhC-CCCCC-CcCHHHhcccccc------cCCC---hhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 25 NQIERLYSRFTSLD-RGDCG-TLSREDFLRIPEL------AINP---LGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 25 ~~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~~~~------~~~~---~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
..+..+..+|..|| ++++| +|+..||+.++.. .... ..++++..+|.++ +|.|+|.||+.++..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~-dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNK-DNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHH
Confidence 45678999999999 78998 5999999997422 1222 2477999999999 9999999999988865
No 55
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5.3e-08 Score=47.49 Aligned_cols=28 Identities=32% Similarity=0.512 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
.++.+|+.||+|++|+|+.+||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3688999999999999999999999875
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.61 E-value=6.8e-07 Score=55.52 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
....+..+|..|. .+.|.++..||+.++.. ++...-++..++.+ |+.+|.|+||.|+|+||+.++....
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~i----m~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKI----MKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 5567788999997 45679999999999975 23445567777777 9999999999999999999987643
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.60 E-value=9.3e-08 Score=59.79 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhCC--CCCCCcCHHHhccccc--ccCC-------ChhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 24 PNQIERLYSRFTSLDR--GDCGTLSREDFLRIPE--LAIN-------PLGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 24 ~~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~~~--~~~~-------~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
+++++.++.+|..+|+ +++|+|+..+|..++. ++.. .....++..++.++ +|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~-~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNK-DGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCC-CCcCcHHHHHHHHHHH
Confidence 4678899999999999 8999999999999743 3321 22366889999999 9999999999988753
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.59 E-value=1.5e-07 Score=61.68 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHHHHHHHHH
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLA 88 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~ 88 (188)
+.+.....+.-.|..+|.|++|.|+..|+..+.-.........++..+|.++ +|.|+++||..++.
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~-Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDK-DGSISLDEWCYCFI 107 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCC-CCCCCHHHHHHHHh
Confidence 3456778899999999999999999999998751122233477999999999 99999999999983
No 59
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.57 E-value=2.3e-07 Score=58.54 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhC-CCCCC-CcCHHHhccccc--ccC----CCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 25 NQIERLYSRFTSLD-RGDCG-TLSREDFLRIPE--LAI----NPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 25 ~~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~~~--~~~----~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
..+..++++|..|| ++++| .|+..|++.++. ++. .+. .++++..+|.++ +|.|+|.+|+.++..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~-~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENG-DGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCC-CCcCcHHHHHHHHHHH
Confidence 35678999999997 99999 599999999753 332 222 367899999999 9999999999888754
No 60
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.57 E-value=2.3e-07 Score=57.88 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhCC-CC-CCCcCHHHhccccc----ccCCChh---HHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 24 PNQIERLYSRFTSLDR-GD-CGTLSREDFLRIPE----LAINPLG---DRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 24 ~~~~~~l~~~F~~~D~-~~-~g~i~~~e~~~~~~----~~~~~~~---~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
++.+..+-.+|..||. ++ +|+|+..||+.++. ++..... .++++.+|.++ +|.|+|.+|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~-dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNK-DQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC-CCCCcHHHHHHHHHHH
Confidence 3467788899999998 66 89999999999753 4544433 66888999999 9999999999888754
No 61
>KOG0030|consensus
Probab=98.54 E-value=2.8e-07 Score=60.89 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--CCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN--GDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~l~~~ 176 (188)
+....++++|..||..++|.|+..++-.+|+. +|.++++.++... +....++ +-.+|+|++|+.++...
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~----l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKV----LGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHH----HcCcccchhhhhhhhHHHHHHHHHHH
Confidence 46689999999999999999999999999999 7999999999888 7766666 34568888888877653
No 62
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.51 E-value=2.1e-07 Score=54.91 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred HHHHhhhCCCCCCCcCHHHhccc-ccccCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 31 YSRFTSLDRGDCGTLSREDFLRI-PELAINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
++.|..+|++++|.|+..|+..+ ...+... ...+++..++.++ +|.|+|++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~-~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDK-DGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCC-CCcCCHHHHHHHHHHH
Confidence 56899999999999999999996 4555422 2367899999999 9999999999888653
No 63
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=4.1e-07 Score=57.61 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhCC-CC-CCCcCHHHhccccc------ccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 26 QIERLYSRFTSLDR-GD-CGTLSREDFLRIPE------LAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 26 ~~~~l~~~F~~~D~-~~-~g~i~~~e~~~~~~------~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
.+..++.+|..+|. ++ +|+|+..|++.++. ++..+. ...++..+|.++ +|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~-dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNR-DGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCC-CCcCcHHHHHHHHHH
Confidence 46779999999997 87 79999999999743 233333 367888999999 999999999988774
No 64
>KOG0036|consensus
Probab=98.49 E-value=1.9e-06 Score=66.85 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
..+|..+|.++ +|.+++.+....+..+.... +..+....+|+..|.|.+|.++..||++.+..- +
T Consensus 17 ~~lf~~lD~~~-~g~~d~~~l~k~~~~l~~~~--------~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------E 81 (463)
T KOG0036|consen 17 RCLFKELDSKN-DGQVDLDQLEKGLEKLDHPK--------PNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------E 81 (463)
T ss_pred HHHHHHhccCC-CCceeHHHHHHHHHhcCCCC--------CchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------H
Confidence 45899999999 99999999999888877663 467888999999999999999999999998762 4
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
.++..+ |..+|.++||+|..+|...++.+...
T Consensus 82 ~~l~~~----F~~iD~~hdG~i~~~Ei~~~l~~~gi 113 (463)
T KOG0036|consen 82 LELYRI----FQSIDLEHDGKIDPNEIWRYLKDLGI 113 (463)
T ss_pred HHHHHH----HhhhccccCCccCHHHHHHHHHHhCC
Confidence 455666 99999999999999999999887643
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.44 E-value=4.2e-07 Score=45.15 Aligned_cols=27 Identities=48% Similarity=0.706 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLH 133 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~ 133 (188)
+++.+|+.+|.|++|+|+.+||..+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999998
No 66
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.44 E-value=4.7e-07 Score=56.61 Aligned_cols=66 Identities=18% Similarity=0.360 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhh-hCCCCCC-CcCHHHhccccccc--------CC-ChhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 24 PNQIERLYSRFTS-LDRGDCG-TLSREDFLRIPELA--------IN-PLGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 24 ~~~~~~l~~~F~~-~D~~~~g-~i~~~e~~~~~~~~--------~~-~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
++.+..+..+|.. +|++++| .|+..||+.++.-. .. ...++++..+|.++ +|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~-DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNS-DGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCC-CCcCcHHHHHHHHHHH
Confidence 3467889999999 7788875 99999999974322 11 22477999999999 9999999999887754
No 67
>KOG0751|consensus
Probab=98.35 E-value=5.8e-06 Score=65.56 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=82.6
Q ss_pred HHHHHHHhhhCCCCCCCcCHHHhcccc-ccc------CCChhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhh
Q psy17263 28 ERLYSRFTSLDRGDCGTLSREDFLRIP-ELA------INPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENK 100 (188)
Q Consensus 28 ~~l~~~F~~~D~~~~g~i~~~e~~~~~-~~~------~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 100 (188)
.-...+|..||+.++|.+|..++..+. +.. ++...+-|-..|.... ...++|.+|.+++..+
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~-~r~~ny~~f~Q~lh~~---------- 176 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR-KRHLNYAEFTQFLHEF---------- 176 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH-HHhccHHHHHHHHHHH----------
Confidence 345667899999999999999998863 222 2222233444444455 6678999999988875
Q ss_pred hchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh-ccCCCCcccHHHHH
Q psy17263 101 LNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA-DQNGDQMISFDEFC 170 (188)
Q Consensus 101 ~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~g~i~~~ef~ 170 (188)
..+..+.+|+..|+.++|.||.-+++..+.....+-+++ .++.. +-.. ..+...++|+..|.
T Consensus 177 ---~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~-~v~~n----lv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 177 ---QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTP-FVEEN----LVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred ---HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCH-HHhhh----hhhhcCCCCccccchHHHH
Confidence 667788999999999999999999999987743333333 34333 3333 33334445555443
No 68
>KOG0041|consensus
Probab=98.35 E-value=2.7e-06 Score=59.77 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
|+.++|+.+...|..+|.+.+|+|+..|++.+ -.++...+ .+.++..+|.|. +|+|+|.+|+..+.....+.-..
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~-dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDF-DGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhccc-ccchhHHHHHHHHHHHhcccccc
Confidence 78889999999999999999999999999997 45555443 378999999999 99999999999887755433111
Q ss_pred hhhhchHHHHHHHHH--HHhcCCCCCcccHHHHHHH
Q psy17263 98 ENKLNSREQKLKFAF--KMYDLDNDDAISRDELLAV 131 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F--~~~D~~~~G~I~~~el~~~ 131 (188)
...+..+= ...|...-|......|-..
T Consensus 172 -------ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 172 -------DSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred -------chHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 12222222 3478888887777766544
No 69
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.34 E-value=2.2e-06 Score=48.31 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHHhhccc-chhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPI-KKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
+|.|+.++|..++..+... . ....+..+|..+|.+++|.|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~---------s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDL---------SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSS---------CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCC---------CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6899999999999654333 2 4567999999999999999999999998864
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.32 E-value=7.4e-07 Score=43.40 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.7
Q ss_pred HHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 151 RTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 151 ~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
++|+.+|.|++|.|+++||..++++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4499999999999999999999864
No 71
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.31 E-value=4.2e-06 Score=47.87 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=48.7
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVL 132 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l 132 (188)
..++..+|.++ +|.|++.+|..++....... ....+..+|..+|.+++|.|+.++|..++
T Consensus 3 ~~~f~~~d~~~-~g~l~~~e~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDG-DGTISADELKAALKSLGEGL---------SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCC-CCcCcHHHHHHHHHHhCCCC---------CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34677788888 89999999998887664333 56778889999999999999999998764
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.24 E-value=1.9e-06 Score=40.45 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVL 132 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l 132 (188)
++.+|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.18 E-value=1.2e-05 Score=63.57 Aligned_cols=56 Identities=29% Similarity=0.403 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 103 SREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.....++.+|+.+|.+++|.|+.+||.. ++.+ |..+|.|++|.|+++||..++...
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~----F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAV----FDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHH----HHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999999941 3445 999999999999999999988653
No 74
>KOG4065|consensus
Probab=98.12 E-value=1.2e-05 Score=51.45 Aligned_cols=68 Identities=31% Similarity=0.410 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHh-----C----CCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q psy17263 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMV-----G----ANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173 (188)
Q Consensus 106 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~-----~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 173 (188)
+---..|++.|.|++|.|+--|+...+...- | .-.++.+++.+++-+++..|.|+||.|+|-||++..
T Consensus 67 qlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 67 QLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 3334578999999999999999999987621 1 134688899999999999999999999999998753
No 75
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.09 E-value=7.3e-06 Score=51.15 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhCCC--CCCCcCHHHhccccc--ccCC-------ChhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 25 NQIERLYSRFTSLDRG--DCGTLSREDFLRIPE--LAIN-------PLGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 25 ~~~~~l~~~F~~~D~~--~~g~i~~~e~~~~~~--~~~~-------~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
+.+..+...|..++.. ++|.|+..||+.++. ++.. .....++..+|.++ +|.|+|++|+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~-dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQ-DGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCC-CCcCcHHHHHHHHHHH
Confidence 4567888999999866 489999999999753 2221 22367899999999 9999999999888754
No 76
>KOG0751|consensus
Probab=98.05 E-value=2.2e-05 Score=62.42 Aligned_cols=101 Identities=16% Similarity=0.277 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHhh---hCCCCCCCcCHHHhccc-ccc----cCCChhHHHHH-HHhhcCCCCcccHHHHHHHHHhhcc
Q psy17263 22 VTPNQIERLYSRFTS---LDRGDCGTLSREDFLRI-PEL----AINPLGDRIVH-VFFEEGCSDRVNFRQFMQVLARFRP 92 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~---~D~~~~g~i~~~e~~~~-~~~----~~~~~~~~l~~-~~d~~~~~g~i~~~ef~~~~~~~~~ 92 (188)
+...+-++|+.+|.. .+.++...++.++|..- +.+ ..++...++.. ..|... +|-|+|+||..+-..+|.
T Consensus 27 lkra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tK-Dglisf~eF~afe~~lC~ 105 (694)
T KOG0751|consen 27 LKRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTK-DGLISFQEFRAFESVLCA 105 (694)
T ss_pred hccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcc-cccccHHHHHHHHhhccC
Confidence 455556667776654 56788889999999883 332 22333334433 446677 899999999998887775
Q ss_pred cchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 93 IKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
+......+|+.||+.++|.++.+++..+...
T Consensus 106 -----------pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 106 -----------PDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred -----------chHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 4467888999999999999999999999875
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.03 E-value=3.9e-05 Score=49.26 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 103 SREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
........+|...|. ++|.|+.++.+.++.. -+++.+.+..+ ....|.+++|.++.+||+-++.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHHH
Confidence 356788899999984 6899999999999876 35888888888 99999999999999999987753
No 78
>KOG0040|consensus
Probab=97.92 E-value=2.7e-05 Score=68.92 Aligned_cols=75 Identities=17% Similarity=0.389 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANIS-------EEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....+..+|+.||++.+|.++..+|+.+|+. +|..++ +.+++++ +..+||+.+|.|+..+|+++|...
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrs-lgY~lpmvEe~~~~p~fe~~----ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRS-LGYDLPMVEEGEPEPEFEEI----LDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHh-cCCCCcccccCCCChhHHHH----HHhcCCCCcCcccHHHHHHHHHhc
Confidence 3446677999999999999999999999999 788773 2246666 999999999999999999999988
Q ss_pred ccccccc
Q psy17263 177 DVEQKMS 183 (188)
Q Consensus 177 ~~~~~~~ 183 (188)
...+..+
T Consensus 2326 ETeNI~s 2332 (2399)
T KOG0040|consen 2326 ETENILS 2332 (2399)
T ss_pred ccccccc
Confidence 7766554
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.86 E-value=2.1e-05 Score=50.47 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
+++++...+..+|..++. .+|.|+..+...+ ...+... .-.+|+...|.++ +|.++++||+..+...
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~-dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDN-DGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSS-SSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCC-CCcCCHHHHHHHHHHH
Confidence 678899999999999985 5799999999996 4444443 3488999999999 9999999999887764
No 80
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.83 E-value=5.5e-05 Score=47.07 Aligned_cols=64 Identities=22% Similarity=0.490 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCcCHHHhccccc--cc---C---CC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 25 NQIERLYSRFTSLDRGDCGTLSREDFLRIPE--LA---I---NP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 25 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~--~~---~---~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
..+..+-.+|..|. ...+.++..||+.++. ++ . ++ ..+.++...|.++ +|.|+|.||+.++..+
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~-Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCR-DGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCC-CCcCcHHHHHHHHHHH
Confidence 45677888999987 3467999999999642 21 1 12 2377999999999 9999999999988864
No 81
>PF14658 EF-hand_9: EF-hand domain
Probab=97.81 E-value=0.00011 Score=42.68 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=53.9
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHH
Q psy17263 65 IVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDND-DAISRDELLAVLHM 134 (188)
Q Consensus 65 l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~I~~~el~~~l~~ 134 (188)
.|.+||.++ .|.|...+++.++....... +....++.+.+.+|+++. |.|+.+.|..+|+.
T Consensus 3 ~F~~fD~~~-tG~V~v~~l~~~Lra~~~~~--------p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQK-TGRVPVSDLITYLRAVTGRS--------PEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcC-CceEeHHHHHHHHHHHcCCC--------CcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 578899999 99999999999998877634 477899999999999998 99999999999875
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.80 E-value=0.00011 Score=40.30 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.++..|++.+|+. +...+++.-+..+ |+.+|.+++|.+.-+||..+.+.
T Consensus 1 kmsf~Evk~lLk~-~NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKM-MNIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHH-TT----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHHH
Confidence 3688999999999 7999999888888 99999999999999999988764
No 83
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=1.2e-05 Score=52.56 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
....+...|..+|.|+||.|+..|+..+... + ...+.=+..+ ++.+|.|+||.|+..||..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~-l--~~~e~C~~~F----~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRP-L--MPPEHCARPF----FRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGST-T--STTGGGHHHH----HHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHH-H--hhhHHHHHHH----HHHcCCCCCCCCCHHHHcc
Confidence 5678889999999999999999999987654 2 2223234555 9999999999999999975
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.76 E-value=4.2e-05 Score=35.77 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.5
Q ss_pred HHHHHhccCCCCcccHHHHHHHH
Q psy17263 151 RTILEADQNGDQMISFDEFCKAL 173 (188)
Q Consensus 151 ~~~~~~d~~~~g~i~~~ef~~~l 173 (188)
.+|..+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 34999999999999999998864
No 85
>KOG1029|consensus
Probab=97.72 E-value=0.00042 Score=58.08 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCCh-hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchh---
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPL-GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKS--- 96 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~-~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~--- 96 (188)
+|+++.......|..+ +-..|+||..+.+++ ++.++... ..+|+...|.|+ +|+++..||...+....-....
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldk-DGrmdi~EfSIAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDK-DGRMDIREFSIAMKLIKLKLQGIQL 87 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCc-cccchHHHHHHHHHHHHHHhcCCcC
Confidence 6777777777778776 556799999999995 66665543 488999999999 9999999998766441110000
Q ss_pred --h-----------------------------------------------------------------------------
Q psy17263 97 --K----------------------------------------------------------------------------- 97 (188)
Q Consensus 97 --~----------------------------------------------------------------------------- 97 (188)
.
T Consensus 88 P~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~ 167 (1118)
T KOG1029|consen 88 PPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPH 167 (1118)
T ss_pred CCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0
Q ss_pred --------h---------hhh--chHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc
Q psy17263 98 --------E---------NKL--NSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ 158 (188)
Q Consensus 98 --------~---------~~~--~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (188)
. ++. ....-..+.+|+.+|+..+|++|-..-+.+|-. -+++...+-.| ...-|.
T Consensus 168 ~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~I----W~LsDv 240 (1118)
T KOG1029|consen 168 DSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ---SGLPQNQLAHI----WTLSDV 240 (1118)
T ss_pred CcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHh---cCCchhhHhhh----eeeecc
Confidence 0 000 112335667899999999999999999998854 35777777777 999999
Q ss_pred CCCCcccHHHHHHHHc
Q psy17263 159 NGDQMISFDEFCKALE 174 (188)
Q Consensus 159 ~~~g~i~~~ef~~~l~ 174 (188)
|+||+++-+||+-++.
T Consensus 241 d~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 241 DGDGKLSADEFILAMH 256 (1118)
T ss_pred CCCCcccHHHHHHHHH
Confidence 9999999999987653
No 86
>KOG0038|consensus
Probab=97.64 E-value=0.00049 Score=46.19 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=69.7
Q ss_pred HHHHHHhhhCCCCCCCcCHHHhcccccccCCChh-----HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhch
Q psy17263 29 RLYSRFTSLDRGDCGTLSREDFLRIPELAINPLG-----DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNS 103 (188)
Q Consensus 29 ~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~-----~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 103 (188)
++.++|. .++.|.+|..+|..+++....... .--++.+|-++ ++.|.-.+....+..+.+..-.. ..
T Consensus 75 ri~e~FS---eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~-D~~i~~~DL~~~l~~lTr~eLs~----eE 146 (189)
T KOG0038|consen 75 RICEVFS---EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDG-DEFIGHDDLEKTLTSLTRDELSD----EE 146 (189)
T ss_pred HHHHHhc---cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCC-CCcccHHHHHHHHHHHhhccCCH----HH
Confidence 4445555 699999999999997553221111 22356677788 89999888888887766543111 12
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
....+.++....|.||+|.++..||..++..
T Consensus 147 v~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 147 VELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 4456677888889999999999999998865
No 87
>KOG2562|consensus
Probab=97.60 E-value=0.00038 Score=55.11 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHh-----hcccchhhhhhhchHHHHHHHH---HHHhcCCCCCcccHHHHHHHHHHHh
Q psy17263 65 IVHVFFEEGCSDRVNFRQFMQVLAR-----FRPIKKSKENKLNSREQKLKFA---FKMYDLDNDDAISRDELLAVLHMMV 136 (188)
Q Consensus 65 l~~~~d~~~~~g~i~~~ef~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---F~~~D~~~~G~I~~~el~~~l~~~~ 136 (188)
+|-.++..+ .|+|+..+....... +.....-.+...+...+....+ |-.+|+|++|.|+.++|...-..
T Consensus 230 IFy~~nrs~-tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~-- 306 (493)
T KOG2562|consen 230 IFYYLNRSR-TGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH-- 306 (493)
T ss_pred hheeeCCcc-CCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc--
Confidence 444555566 777777766653322 1111100011122223333334 77789999999999999886543
Q ss_pred CCCCCHHHHHHHHHHHHHH----hccCCCCcccHHHHHHHHcc
Q psy17263 137 GANISEEQLTSIAERTILE----ADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~l~~ 175 (188)
.++. .++++||.. .-.-.+|+++|++|+-++..
T Consensus 307 --tlt~----~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 307 --TLTE----RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred --chhh----HHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 2443 345555873 33446889999999887754
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.58 E-value=9.7e-05 Score=48.26 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccccc--CCChhHHHHHHHhhcCCCCcccHHHHHH
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELA--INPLGDRIVHVFFEEGCSDRVNFRQFMQ 85 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~--~~~~~~~l~~~~d~~~~~g~i~~~ef~~ 85 (188)
........+.=.|..+|.|++|.|+..|+..+.... .......++...|.++ +|.|++.||..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~-d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNK-DGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT--SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCC-CCCCCHHHHcc
Confidence 334455566667999999999999999999986522 2233478999999999 99999999975
No 89
>KOG0046|consensus
Probab=97.58 E-value=0.00033 Score=56.28 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....++..|...| +++|+|+..|+..++.. .+... -..+.+.+++++...+.|.+|+|+|++|+.++...
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k-~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKK-AKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHH-hcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4568889999999 99999999999999988 44433 22233334444999999999999999999976543
No 90
>KOG1707|consensus
Probab=97.49 E-value=0.00076 Score=55.13 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccc----ccCCChh-HH---HHHHHhhcC-CCCcccHHHHHHHHHhhcc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE----LAINPLG-DR---IVHVFFEEG-CSDRVNFRQFMQVLARFRP 92 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~----~~~~~~~-~~---l~~~~d~~~-~~g~i~~~ef~~~~~~~~~ 92 (188)
+.+.-+..|..+|...|.|.+|.++-.|+..+.. ....+.. +. .+...-+++ ....++..-|+-+...+..
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfie 268 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIE 268 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHH
Confidence 6788889999999999999999999999988622 2222221 11 222222233 2344555556554433222
Q ss_pred cchhh---------------------------------hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC
Q psy17263 93 IKKSK---------------------------------ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN 139 (188)
Q Consensus 93 ~~~~~---------------------------------~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~ 139 (188)
....+ .+..+...+.+..+|..||.|+||.++..|+..+... +...
T Consensus 269 rgr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~-~P~~ 347 (625)
T KOG1707|consen 269 RGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST-APGS 347 (625)
T ss_pred hccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh-CCCC
Confidence 11111 3344556788999999999999999999999999987 4433
Q ss_pred C-CHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 140 I-SEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 140 ~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
. ...-. ....-.+..|.++|+-|++...-
T Consensus 348 pW~~~~~-------~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 348 PWTSSPY-------KDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CCCCCcc-------cccceecccceeehhhHHHHHHH
Confidence 3 11100 11111347888999988876543
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.49 E-value=0.00024 Score=56.23 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHhhhCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 28 ERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 28 ~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
..+..+|+.+|.+++|.|+..||.. .+.+|..+|.++ +|.|+++||...+..
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~D~d~-DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDALDLNH-DGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHhCCCC-CCCCcHHHHHHHHHH
Confidence 4677889999999999999999942 477899999999 999999999998875
No 92
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.47 E-value=0.00088 Score=41.16 Aligned_cols=70 Identities=14% Similarity=0.312 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.++.+|..|-. +.+.+|.++|...|....+. ..+.+++..++.+.-........+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36789999955 78999999999999875555 568999999844322222223578899999999997653
No 93
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.37 E-value=0.00027 Score=34.79 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.7
Q ss_pred HHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 151 RTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 151 ~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.+|+.+|.|++|.|+.+||..++++
T Consensus 4 ~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 4 EAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3499999999999999999999974
No 94
>KOG4251|consensus
Probab=97.35 E-value=0.00016 Score=52.74 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANI--SEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
....+..+|...|.|.+|+|+..|+++.+..-....+ +.++-+.. |+..|+|+||.|+++||.--+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkth----FraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTH----FRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhh----eeeeCCCCCCceehhhhhhHHHh
Confidence 5678999999999999999999999988765111111 12222333 89999999999999999755443
No 95
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.33 E-value=0.0017 Score=35.67 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 78 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
++|.|...++....-.- ....+..+|+..|++++|.+..+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~~---------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEM---------DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT-------------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCc---------CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 57778777777654333 6788899999999999999999999999876
No 96
>KOG0169|consensus
Probab=97.33 E-value=0.0077 Score=50.77 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccC--CC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAI--NP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~--~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
...+...-+...|...|++.+|.++..+..++ ..+.. .. ....+++..+... ++++.+.+|..+.......
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~-~~k~~~~~~~~~~~~~~~r---- 204 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQ-TGKLEEEEFVKFRKELTKR---- 204 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhc-cceehHHHHHHHHHhhccC----
Confidence 44455566888899999999999999999885 33222 21 2255677777777 8999999999988865432
Q ss_pred hhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 98 ENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
..+..+|..+-.+ .++++.++|..++....+. +.+.+..+++++++-..-.....+.++.+.|..+|...
T Consensus 205 --------pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 205 --------PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred --------chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 2777888888544 8899999999999984332 56677777773332122222345669999999999875
No 97
>KOG0377|consensus
Probab=97.24 E-value=0.00094 Score=52.79 Aligned_cols=66 Identities=14% Similarity=0.279 Sum_probs=55.2
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
+-+|..+|+|+ +|.|+.+||...+..+....+.. -....+-.+-+.+|.|+||.|+.+||-.+.+.
T Consensus 550 etiF~~iD~D~-SG~isldEF~~a~~l~~sh~~~~-----i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 550 ETIFNIIDADN-SGEISLDEFRTAWKLLSSHMNGA-----ISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHhccCC-CCceeHHHHHHHHHHHHhhcCCC-----cCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 56899999999 99999999999998876543221 35667788889999999999999999988775
No 98
>KOG0046|consensus
Probab=97.21 E-value=0.00098 Score=53.67 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccc-ccCC------ChhHHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE-LAIN------PLGDRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~-~~~~------~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
+|++++..++..|...| +++|+++..++..++. .+.. ...+.++...+.+. +|+|+|++|+..+..+.
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~-~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDA-DGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCc-CCccCHHHHHHHHHhhh
Confidence 99999999999999999 9999999999998632 2211 12255777778888 99999999999777653
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.09 E-value=0.0011 Score=31.07 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
++.+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567999999999999999999998864
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.82 E-value=0.0021 Score=30.03 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred HHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 151 RTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 151 ~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.++..+|.+++|.|++.+|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3499999999999999999998864
No 101
>KOG4666|consensus
Probab=96.34 E-value=0.0058 Score=46.58 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 154 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (188)
.+.|...||...+.. +....++-.|..||.+++|.++..|....+.-+++...++.-++-. |+
T Consensus 241 g~~igi~efa~~l~v-------------pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~a----fk 303 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRV-------------PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYA----FK 303 (412)
T ss_pred CCCcceeEeeeeeec-------------chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHH----HH
Confidence 556666666654442 2457888999999999999999999998888767777888777777 99
Q ss_pred HhccCCCCcccHHHHHHHHccc
Q psy17263 155 EADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 155 ~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.++...||.+.-.+|..+++..
T Consensus 304 ~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 304 RFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hcccccccccchHHHHHHHHHh
Confidence 9999999999999998887653
No 102
>KOG3555|consensus
Probab=96.14 E-value=0.012 Score=45.31 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=57.7
Q ss_pred hhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 100 ~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
..+.-...+.++|..+|.|.+|.++..||+.+-.. -.+.=|+.+ |...|...||.|+-.||+..+.+...
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-----knE~CikpF----fnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-----KNEACIKPF----FNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhcc-----CchhHHHHH----HhhhcccccCccccchhhhhhccCCC
Confidence 44456789999999999999999999999986532 334446666 99999999999999999999988754
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=96.10 E-value=0.12 Score=43.48 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=67.2
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTI 153 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~ 153 (188)
.|.++|.+|..+...+.... ......+..+|..+-. +.+.++.++|..+|....+.. .+.+....++.+++
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~-------~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~ 85 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITE-------AEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVI 85 (599)
T ss_pred CCCcCHHHHHHHHHHhcccc-------CCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 68999999988777654211 0145789999999954 446899999999999865543 66777777765555
Q ss_pred HHhcc---CCCCcccHHHHHHHHccc
Q psy17263 154 LEADQ---NGDQMISFDEFCKALERT 176 (188)
Q Consensus 154 ~~~d~---~~~g~i~~~ef~~~l~~~ 176 (188)
..... ...+.++++.|..+|...
T Consensus 86 ~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 86 NRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred hhccccccccccCcCHHHHHHHHcCc
Confidence 44321 123459999999999864
No 104
>KOG4347|consensus
Probab=96.07 E-value=0.03 Score=46.58 Aligned_cols=106 Identities=19% Similarity=0.323 Sum_probs=77.1
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHHhhh-CCCCC--C-----------CcCHHHhcccccccCCC-----hhHHHHHHHhh
Q psy17263 12 EEIAQIQEET-VTPNQIERLYSRFTSL-DRGDC--G-----------TLSREDFLRIPELAINP-----LGDRIVHVFFE 71 (188)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~l~~~F~~~-D~~~~--g-----------~i~~~e~~~~~~~~~~~-----~~~~l~~~~d~ 71 (188)
..++.+.+.+ +|..++..++.+|..- -.+.- | +|+...|..+......+ ...++|...|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 4566777777 9999999999999642 11111 1 12333333321111111 22678999999
Q ss_pred cCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHH
Q psy17263 72 EGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDEL 128 (188)
Q Consensus 72 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el 128 (188)
.. .|.++|.+++..+..+..+. ..+.+..+|+++|.+++ ....++.
T Consensus 567 s~-~g~Ltf~~lv~gL~~l~~~~---------~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SM-TGLLTFKDLVSGLSILKAGD---------ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CC-cceeEHHHHHHHHHHHHhhh---------HHHHHHHHHhhccCCcc-ccccccc
Confidence 99 99999999999999988777 78899999999999999 8888887
No 105
>KOG4578|consensus
Probab=96.05 E-value=0.0042 Score=47.29 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 106 ~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
..+...|..+|+|.++.|...|++-+=.-+ .....+......++++.|.|+|.+|++.||...|.....
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l----~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVL----LKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHH----HhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 356678999999999999999977654432 122334455566699999999999999999999876543
No 106
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.99 E-value=0.063 Score=33.42 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMM------VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 105 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~------~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.++++.+|+.+ .|.+|.++...|..+|+.+ +|+..+-.-++..++.+|.... ....|+.++|+.++...+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 46889999999 6999999999999988762 2332222224455455587763 455699999999998874
No 107
>KOG2243|consensus
Probab=95.89 E-value=0.017 Score=52.00 Aligned_cols=69 Identities=14% Similarity=0.378 Sum_probs=57.2
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccccccccccc
Q psy17263 111 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQKMSIR 185 (188)
Q Consensus 111 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 185 (188)
.|+.||+||.|.|+..+|...+.. ....+..+++-+ +.....|.+...+|++|+.-+......-.+.|.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfl----lscae~dend~~~y~dfv~rfhepakdigfnva 4130 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFL----LSCAEADENDMFDYEDFVDRFHEPAKDIGFNVA 4130 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHH----HHhhccCccccccHHHHHHHhcCchhhcCcchh
Confidence 588999999999999999999974 567888998888 777788888899999999988876554444443
No 108
>KOG1265|consensus
Probab=95.87 E-value=0.24 Score=43.01 Aligned_cols=121 Identities=14% Similarity=0.264 Sum_probs=89.4
Q ss_pred hCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcC---------CCCcccHHHHHHHHHhhcccchhhhhhhchHHHH
Q psy17263 37 LDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEG---------CSDRVNFRQFMQVLARFRPIKKSKENKLNSREQK 107 (188)
Q Consensus 37 ~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~---------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~ 107 (188)
+..+.+|+|..+.+.+++..+... .++..+...-+ .....+++.|..++..++. ...
T Consensus 157 mqvn~~grip~knI~k~F~~~k~~--KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp------------R~e 222 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSADKKE--KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP------------RPE 222 (1189)
T ss_pred hcccccccccHHHHHHHhhcCCch--hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC------------chh
Confidence 346778999999998876554433 34444333211 1134668888888888764 348
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH---------HhCCCCCHHHHHHHHHHHHHHhccCC----CCcccHHHHHHHHc
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHM---------MVGANISEEQLTSIAERTILEADQNG----DQMISFDEFCKALE 174 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~ 174 (188)
+..+|..+..+..-++|.++|..+|.. .+-..+++..+..+ +..+.++. .|+++.+-|+.++.
T Consensus 223 ie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~l----iekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 223 IEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSL----IEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred HHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHH----HHHcCCchhhhhccccchhhhHHHhh
Confidence 899999999888899999999999975 22346678888888 88887775 58999999999998
Q ss_pred c
Q psy17263 175 R 175 (188)
Q Consensus 175 ~ 175 (188)
.
T Consensus 299 g 299 (1189)
T KOG1265|consen 299 G 299 (1189)
T ss_pred C
Confidence 7
No 109
>KOG3866|consensus
Probab=95.72 E-value=0.024 Score=43.08 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH----HhCCCCCHHHHH-------HHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHM----MVGANISEEQLT-------SIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~----~~~~~~~~~~~~-------~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
-+..|...|.|++|+++..||.++... +....-.+.++. .|-.++++.+|.|.|.-|++++|++.-.+.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 345788999999999999999988764 334433333333 334677999999999999999999876554
No 110
>KOG1955|consensus
Probab=95.39 E-value=0.038 Score=44.65 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCCh--hHHHHHHHhhcCCCCcccHHHHHHHHHhhccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPL--GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPI 93 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~--~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~ 93 (188)
+|+++.+.+-..|+-+-+|..|.|+-.-.++++....-+. ..+|+...|-+. +|.+++.||+..+......
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~-DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDR-DGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCc-cccccHHHHHhhHhheeec
Confidence 8999999999999999999999999999999755444333 267999999999 9999999999998875543
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.29 E-value=0.17 Score=35.36 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLH 133 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~ 133 (188)
+++|..+...+ .+.+++.|...++.......... .-....-++..+|.+. ++.+|.+.+++++.+..
T Consensus 99 e~iF~kya~~~-~d~LT~~E~~~m~~~nr~~~D~~--GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 99 EEIFSKYAKTG-PDALTLRELWRMLKGNRNANDPF--GWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHhCCCC-CCCcCHHHHHHHHHhccccCCcc--hhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 45778887777 78899999998888754432100 0001244566677776 67899999999998764
No 112
>KOG0035|consensus
Probab=94.87 E-value=0.16 Score=44.23 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChh-----HH---HHHHHhhcCCCCcccHHHHHHHHHhhcc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLG-----DR---IVHVFFEEGCSDRVNFRQFMQVLARFRP 92 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~-----~~---l~~~~d~~~~~g~i~~~ef~~~~~~~~~ 92 (188)
.++..+.+++..|+.+++...|.++.++|..+ ..+|.+... .+ ++...++.. .|.++|.+|...+..-..
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~-~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLI-QGQVQLLEFEDDLEREYE 819 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCccc-ccceeHHHHHhHhhhhhh
Confidence 88889999999999999999999999999995 777766543 22 444445566 789999999998876443
Q ss_pred cchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHH
Q psy17263 93 IKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLA 130 (188)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~ 130 (188)
.. .....+..+|...-++.. +|..+||..
T Consensus 820 ~l--------~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 820 DL--------DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hh--------cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 33 356777888888866665 789998887
No 113
>KOG1955|consensus
Probab=94.18 E-value=0.17 Score=41.15 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 102 NSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 102 ~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
+...+.....|+.+-.|-.|+|+-.--+.+... -.++-+|+..| ....|.|.||.+++.||+.++.-
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshI----WeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHI----WELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHH----HhhcccCccccccHHHHHhhHhh
Confidence 345677788899999999999999888887765 35777787777 99999999999999999998753
No 114
>KOG3555|consensus
Probab=94.01 E-value=0.055 Score=41.72 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 26 QIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 26 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
=...+.=+|+++|.|.+|.++..|++.+..-......+.+|...|... +|.|+-.||...+..-
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~k-Dg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYK-DGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccc-cCccccchhhhhhccC
Confidence 345566679999999999999999999744444455688999999999 9999999999888653
No 115
>KOG0998|consensus
Probab=93.60 E-value=0.12 Score=45.43 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhhcccch--hh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKK--SK 97 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~--~~ 97 (188)
++.++...+.++|+.+.+. +|.++....+-+ +.-.+.. ...+++...|.+. +|.++..||...+........ ..
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~-~g~Ld~~ef~~am~l~~~~l~~~~~ 200 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDK-DGNLDRDEFAVAMHLINDLLNGNSE 200 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCCCChhhhccccccccccc-cCCCChhhhhhhhhHHHHHhhcccC
Confidence 7888989999999998666 788888888775 3333322 2357888889999 999999999976655322111 00
Q ss_pred ------------------------------------------------------------------------h--hhhch
Q psy17263 98 ------------------------------------------------------------------------E--NKLNS 103 (188)
Q Consensus 98 ------------------------------------------------------------------------~--~~~~~ 103 (188)
. -..+.
T Consensus 201 p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~ 280 (847)
T KOG0998|consen 201 PVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPS 280 (847)
T ss_pred CCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChH
Confidence 0 22334
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....+..+|...|.+.+|.|+..+....+.. .+++...+..+ ....|..+.|.+++.+|.-.+...
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHV----WLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhh----hhhcchhccCcccccccchhhhhh
Confidence 4567777899999999999999999988854 45777777777 999999999999999887766543
No 116
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=93.22 E-value=0.55 Score=32.44 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=45.4
Q ss_pred HHHHHHh---cCCCCCcccHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 109 KFAFKMY---DLDNDDAISRDELLAVLHM--MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 109 ~~~F~~~---D~~~~G~I~~~el~~~l~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
+.+|..| -..+...++...|..+++. +++..++...++-+ |..+-..+..+|+|++|..+|....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455555 3455668999999999998 22346778877777 8887766667799999999997643
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.74 E-value=0.72 Score=32.30 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC----------------------------------------------
Q psy17263 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA---------------------------------------------- 138 (188)
Q Consensus 105 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---------------------------------------------- 138 (188)
...++.-..-||.|+||.|.+-|-...++. +|.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFra-LGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRA-LGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHH-hCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 345667777899999999999998776665 221
Q ss_pred -------CCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 139 -------NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 139 -------~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.+.+..++++ |..++..+.+.+++.|..++++.+.
T Consensus 85 g~YD~eGrFvp~kFe~i----F~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEI----FSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred cccccCCcCCHHHHHHH----HHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 2346667777 9999998888899999999998864
No 118
>KOG0042|consensus
Probab=92.57 E-value=0.31 Score=40.34 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
.....+.-|..+|.|+.|+++.+++..+|.. .+.+.+++..+++ +...+.+-.|.+...||..++....
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~-~~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKS-ENVGWDEDRLHEE----LQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-hcCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHHHh
Confidence 4456667899999999999999999999999 5789999998888 8888888899999999988876543
No 119
>KOG4347|consensus
Probab=92.52 E-value=0.35 Score=40.56 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDE 168 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 168 (188)
....+.++|+..|.+++|.|+..++...|..+...... +.+.-+ ++..+++.+ ...-++
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~-ek~~l~----y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDAL-EKLKLL----YKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHH-HHHHHH----HhhccCCcc-cccccc
Confidence 55678899999999999999999999999885332222 223333 777777766 444443
No 120
>KOG0035|consensus
Probab=91.91 E-value=0.64 Score=40.70 Aligned_cols=74 Identities=26% Similarity=0.148 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE-EQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
....++..|+.+|+...|..+.+++..+|.. +|.+..+ +++..-...+....|++..|++++.+|...|.+...
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lms-lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMS-LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHh-cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 5678999999999999999999999999988 6877765 344443444567777777899999999999988643
No 121
>KOG4065|consensus
Probab=91.66 E-value=0.38 Score=31.27 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccc-------ccCCC--h--h---HHHHH----HHhhcCCCCcccHHHH
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE-------LAINP--L--G---DRIVH----VFFEEGCSDRVNFRQF 83 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~-------~~~~~--~--~---~~l~~----~~d~~~~~g~i~~~ef 83 (188)
+|+++++-- .|+..|-+++|.++--|+..+.. .+-.| . . +.++. .-|.++ +|.|+|-||
T Consensus 63 mtpeqlqfH--YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~-DG~IDYgEf 139 (144)
T KOG4065|consen 63 MTPEQLQFH--YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNG-DGVIDYGEF 139 (144)
T ss_pred CCHHHHhhh--hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCC-CceeeHHHH
Confidence 788887654 48999999999999999988421 11111 1 1 22333 334466 999999999
Q ss_pred HHH
Q psy17263 84 MQV 86 (188)
Q Consensus 84 ~~~ 86 (188)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 853
No 122
>KOG0169|consensus
Probab=91.49 E-value=2.2 Score=36.67 Aligned_cols=95 Identities=14% Similarity=0.229 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISE 142 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 142 (188)
..++...|.+. .|.+++.+-..++..+...- ....++..|+..+..++|.+...++...... .+..+
T Consensus 139 ~~~~~~ad~~~-~~~~~~~~~~~~~~~~n~~l---------~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~-~~~rp-- 205 (746)
T KOG0169|consen 139 HSIFQEADKNK-NGHMSFDEVLDLLKQLNVQL---------SESKARRLFKESDNSQTGKLEEEEFVKFRKE-LTKRP-- 205 (746)
T ss_pred HHHHHHHcccc-ccccchhhHHHHHHHHHHhh---------hHHHHHHHHHHHHhhccceehHHHHHHHHHh-hccCc--
Confidence 34677888888 89999888887777655444 5667788888888888999999999888776 33322
Q ss_pred HHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 143 EQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
++..+ |..+-.+ .+.++.++++.++...
T Consensus 206 -ev~~~----f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 206 -EVYFL----FVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred -hHHHH----HHHHhCC-CCccCHHHHHHHHHHh
Confidence 45555 5554433 5566766666666554
No 123
>KOG4578|consensus
Probab=91.47 E-value=0.08 Score=40.61 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=47.0
Q ss_pred HHHHHhhhCCCCCCCcCHHHhcccccccCC-----ChhHHHHHHHhhcCCCCcccHHHHHHHHHhh
Q psy17263 30 LYSRFTSLDRGDCGTLSREDFLRIPELAIN-----PLGDRIVHVFFEEGCSDRVNFRQFMQVLARF 90 (188)
Q Consensus 30 l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~-----~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~ 90 (188)
+.=.|..+|+|.++.|...|++.+..+... .....+++..|.++ +..|++.||...+..-
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNk-DKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNK-DKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCC-CceecHHHHhhhhccc
Confidence 333489999999999999999886433222 22367888999999 9999999999988754
No 124
>KOG1029|consensus
Probab=91.11 E-value=0.25 Score=42.28 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccc-cccCCCh-hHHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIP-ELAINPL-GDRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~-~~~~~~~-~~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
+..-....+.+.|+.+|+..+|++|-.+-+.++ ..++... ...|+..-|.|+ +|+++-+||+..+..
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~-DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDG-DGKLSADEFILAMHL 257 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCC-CCcccHHHHHHHHHH
Confidence 555566778999999999999999999999963 3334332 277888889999 999999999976654
No 125
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.74 E-value=0.93 Score=27.52 Aligned_cols=63 Identities=10% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCC----CCCcccHHHHHHHHHH
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLD----NDDAISRDELLAVLHM 134 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~----~~G~I~~~el~~~l~~ 134 (188)
..++..+.. + .+.++.++|..++....+... .....+..+++.|.++ ..+.+|.+.|...|..
T Consensus 3 ~~if~~ys~-~-~~~mt~~~f~~FL~~eQ~~~~-------~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 3 EEIFRKYSS-D-KEYMTAEEFRRFLREEQGEPR-------LTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHCT-T-SSSEEHHHHHHHHHHTSS-TT-------SSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHhC-C-CCcCCHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 456777754 5 688999999999987665420 1456777777777554 4799999999999964
No 126
>KOG1707|consensus
Probab=89.65 E-value=0.87 Score=37.99 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCChhHHHHH-HHhhcCCCCcccHHHHHHHHHhhcccchhhhh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDRIVH-VFFEEGCSDRVNFRQFMQVLARFRPIKKSKEN 99 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~~~l~~-~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 99 (188)
+++..++.+...|..+|.+++|-++..|+..+ ......+....... ..-... .|.++++-|+..|....-..
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~-~G~ltl~g~l~~WsL~Tlld----- 382 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNE-RGWLTLNGFLSQWSLMTLLD----- 382 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecc-cceeehhhHHHHHHHHhhcc-----
Confidence 88999999999999999999999999999997 33444442211100 111123 68999999999998765444
Q ss_pred hhchHHHHHHHHHHHhcCCC
Q psy17263 100 KLNSREQKLKFAFKMYDLDN 119 (188)
Q Consensus 100 ~~~~~~~~~~~~F~~~D~~~ 119 (188)
.....-.-+|-.|..+.
T Consensus 383 ---~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 383 ---PRRTLEYLAYLGFPTDA 399 (625)
T ss_pred ---HHHHHHHHHhcCCcccc
Confidence 22233334566666553
No 127
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.19 E-value=0.56 Score=27.66 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC---CCCcccHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN---GDQMISFDEFCKAL 173 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l 173 (188)
..+.+..+|+.+ .++.++||.+||++.|. +++++.++.+|-...+++ ..|.++|..|+..|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~--------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT--------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC--------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 457889999999 78889999999998753 234455522222222222 12668888887543
No 128
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.01 E-value=1.3 Score=29.93 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHhcc-CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCCCcccHHHHHHH
Q psy17263 8 LLREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCSDRVNFRQFMQV 86 (188)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~ 86 (188)
.+|++++.++++.. .+...++.+.+.|. ++|.+. .+ +. .+.|+|+.|..+
T Consensus 7 ~lsp~eF~qLq~y~eys~kklkdvl~eF~-----~~g~~~---------------------~~--~~-~~~Id~egF~~F 57 (138)
T PF14513_consen 7 SLSPEEFAQLQKYSEYSTKKLKDVLKEFH-----GDGSLA---------------------KY--NP-EEPIDYEGFKLF 57 (138)
T ss_dssp -S-HHHHHHHHHHHHH----HHHHHHHH------HTSGGG---------------------GG--EE-TTEE-HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccc---------------------cc--CC-CCCcCHHHHHHH
Confidence 36777777777766 66666666555553 233211 11 12 458999999999
Q ss_pred HHhhcccchhhhhhhchHHHHHHHHHHHhcCCC
Q psy17263 87 LARFRPIKKSKENKLNSREQKLKFAFKMYDLDN 119 (188)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~ 119 (188)
+....... -+.+-.+++|..|-...
T Consensus 58 m~~yLe~d--------~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 58 MKTYLEVD--------LPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp HHHHTT-S----------HHHHHHHHHHS----
T ss_pred HHHHHcCC--------CCHHHHHHHHHHHhCcc
Confidence 98876554 46788889999986544
No 129
>KOG0039|consensus
Probab=87.64 E-value=1.7 Score=37.35 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=64.3
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC---CCCHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA---NISEEQLTSIAER 151 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~ 151 (188)
++ |++++|. .... +.+..++..|.++|. ++|.++.+++..++...... ........++...
T Consensus 2 ~~-~~~~~~~-----~~~~---------~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDC---------SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAAL 65 (646)
T ss_pred CC-cchhhhc-----ccCC---------ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 56 8888888 2222 378899999999997 99999999999988763222 2224445566677
Q ss_pred HHHHhccCCCCcccHHHHHHHHccc
Q psy17263 152 TILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 152 ~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
++...|.+..|.+.++++...+...
T Consensus 66 ~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 66 IMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred hhhhccccccceeeecchhHHHHhc
Confidence 7999999999988888887777654
No 130
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.48 E-value=2.1 Score=27.08 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccC-CChhHHHHHHHhhcC--CCCcccHHHHHHHHHh
Q psy17263 13 EIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAI-NPLGDRIVHVFFEEG--CSDRVNFRQFMQVLAR 89 (188)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~-~~~~~~l~~~~d~~~--~~g~i~~~ef~~~~~~ 89 (188)
.+.-+.+.+=+.+....+...|..+-. +|+++.+.|..+..+.. .....++|.++-... ....|+-+|+..++..
T Consensus 15 GLrFIskt~~~~~~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 15 GLRFISKTTGGADGWKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred cccceecCCCCccCHHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 344455544444568889999999866 89999999999866552 223466777665432 1357999998888875
Q ss_pred hc
Q psy17263 90 FR 91 (188)
Q Consensus 90 ~~ 91 (188)
+.
T Consensus 93 is 94 (100)
T PF08414_consen 93 IS 94 (100)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 131
>KOG3866|consensus
Probab=82.80 E-value=0.56 Score=35.91 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=55.7
Q ss_pred cHHHHHHHHhcc--CCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccc----cCCChh----------------HHHHH
Q psy17263 10 REEEIAQIQEET--VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPEL----AINPLG----------------DRIVH 67 (188)
Q Consensus 10 ~~~~~~~~~~~~--~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~----~~~~~~----------------~~l~~ 67 (188)
|..+++++...+ +.+.+ -.-+..|.+.|.|++|.++-.|+..++.. ..++.. ++++.
T Consensus 225 SkdQLkEVWEE~DgLdpn~-fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk 303 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQ-FDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMK 303 (442)
T ss_pred cHHHHHHHHHHhcCCCccc-CCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 346677777666 54444 33456688899999999999999886432 122211 34788
Q ss_pred HHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 68 VFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 68 ~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
.+|.+. +.-|+++||+.......
T Consensus 304 ~vDtNq-DRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 304 QVDTNQ-DRLVTLEEFLNDTDNKE 326 (442)
T ss_pred hcccch-hhhhhHHHHHhhhhhcc
Confidence 889898 89999999998766543
No 132
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.76 E-value=11 Score=32.08 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHhc---cCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA--NISEEQLTSIAERTILEAD---QNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~l~~~ 176 (188)
....++.+|..|-.++ +.++.++|..+|....+. ..+.+....++..+..... .-..+.++.+.|..+|...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 5678999999995444 899999999999985433 3466777777555444332 1234569999999999874
No 133
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.05 E-value=1.7 Score=19.12 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.1
Q ss_pred cCCCCCcccHHHHHHHH
Q psy17263 116 DLDNDDAISRDELLAVL 132 (188)
Q Consensus 116 D~~~~G~I~~~el~~~l 132 (188)
|.|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67999999999886543
No 134
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.75 E-value=1.6 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 140 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 140 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
+++++++.+ ...+-.|..|+|.|.+|+.-+...
T Consensus 4 LtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHH----HTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhh----hhhCcCCccCCEeHHHHHHHcccc
Confidence 688999988 999999999999999999887643
No 135
>KOG2557|consensus
Probab=79.93 E-value=8 Score=30.61 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 76 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
..++++.++........+. ..+..+.++...|.+++|.....++.+.+..
T Consensus 73 ~~~~l~k~~~~~~~~~~gt---------~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 73 DKMTLEKLVIAKATYEKGT---------DDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred ccchHHHHhhHHhhhccCc---------ccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 3688888887777666555 6678888999999999999999999988876
No 136
>KOG0042|consensus
Probab=79.52 E-value=2.8 Score=35.01 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccc-ccCCCh---hHHHHHHHhhcCCCCcccHHHHHHHHHhhcccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE-LAINPL---GDRIVHVFFEEGCSDRVNFRQFMQVLARFRPIK 94 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~-~~~~~~---~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~ 94 (188)
++++++...+..|..+|.++.|+++..+..+++. .+.... ..++....+... .|.+...+|..+......+.
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~-~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENL-NGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-cceeeHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999988633 332222 256777778887 89999999999888766544
No 137
>KOG1264|consensus
Probab=79.17 E-value=18 Score=31.95 Aligned_cols=144 Identities=20% Similarity=0.264 Sum_probs=83.4
Q ss_pred CCHHHHHH-HHHHHhhhCCCCCCCcCHHHhccc-ccccCCChhHH-HHHHHhhcC-CCCcccHHHHHHHHHhhcccchhh
Q psy17263 22 VTPNQIER-LYSRFTSLDRGDCGTLSREDFLRI-PELAINPLGDR-IVHVFFEEG-CSDRVNFRQFMQVLARFRPIKKSK 97 (188)
Q Consensus 22 ~~~~~~~~-l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~~~~~-l~~~~d~~~-~~g~i~~~ef~~~~~~~~~~~~~~ 97 (188)
.++.+|.. ++..+-..|......|+..+++.+ ........... +...+-.++ ..+.++|++|..+...+.-.....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchh
Confidence 56666665 455677777777778999999996 44444433333 334554433 368899999999888765433111
Q ss_pred hhhhchHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHHhccC-----CCCcccHH
Q psy17263 98 ENKLNSREQKLKFAFKMYDLD--NDDAISRDELLAVLHMMVGANISEE---QLTSIAERTILEADQN-----GDQMISFD 167 (188)
Q Consensus 98 ~~~~~~~~~~~~~~F~~~D~~--~~G~I~~~el~~~l~~~~~~~~~~~---~~~~~~~~~~~~~d~~-----~~g~i~~~ 167 (188)
........|..--++ .--.|+..||.++|..-.+ ..... .+..+ +..+-.| ..-.+.+.
T Consensus 217 ------~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~-e~~Asdr~av~~~----~r~F~~D~~re~~EPyl~v~ 285 (1267)
T KOG1264|consen 217 ------ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQ-EHWASDRNAVREF----MRKFIDDTMRETAEPYLFVD 285 (1267)
T ss_pred ------hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhH-HHhhhHHHHHHHH----HHHHHhhhhhhccCcceeHH
Confidence 122222223222222 2247999999999865222 22222 23333 3333222 34569999
Q ss_pred HHHHHHccc
Q psy17263 168 EFCKALERT 176 (188)
Q Consensus 168 ef~~~l~~~ 176 (188)
||+.+|-..
T Consensus 286 EFv~fLFSr 294 (1267)
T KOG1264|consen 286 EFVTFLFSR 294 (1267)
T ss_pred HHHHHHhhc
Confidence 999998654
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=78.01 E-value=14 Score=31.39 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHhcc-CCCCcccHHHHHHHHccc
Q psy17263 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQ-NGDQMISFDEFCKALERT 176 (188)
Q Consensus 105 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~ 176 (188)
...+..+|..+-. ++.++.++|..+|....+. ..+.+....+ +..+.. -..+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~i----i~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSI----INSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHH----HHhhhhhhhccCcCHHHHHHHhcCC
Confidence 4588999999853 4799999999999986554 3466777777 444321 235679999999999864
No 139
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.93 E-value=18 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
..--+.++...||.+++|.|+.-.++..+..
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3456778999999999999999999988765
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=76.35 E-value=20 Score=30.41 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhccC----CCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQN----GDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 176 (188)
....+..+|..+-. ++.++.++|..+|....+.. .+.+.+..+ +..+... ..|.++.+.|..+|...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHHhcCc
Confidence 56789999999863 36899999999998855543 344556666 6665433 34679999999999764
No 141
>KOG0998|consensus
Probab=75.62 E-value=2.9 Score=37.09 Aligned_cols=70 Identities=11% Similarity=0.225 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC-hhHHHHHHHhhcCCCCcccHHHHHHHHHhhcc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP-LGDRIVHVFFEEGCSDRVNFRQFMQVLARFRP 92 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~-~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~ 92 (188)
+++.+...+.++|...|.+.+|.|+..+...+ +..+... ..++++...+... .|.+++.+|...+.....
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n-~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQN-TGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhc-cCcccccccchhhhhhhh
Confidence 67888899999999999999999999999995 4444433 3477888899998 999999998877766443
No 142
>KOG4301|consensus
Probab=75.07 E-value=9.4 Score=29.89 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCC-----
Q psy17263 65 IVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGAN----- 139 (188)
Q Consensus 65 l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~----- 139 (188)
++.++|+.+ .|.++.---...+..++.+. ..+.++.+|.+.. |.+|.+..-.+-++++.++...
T Consensus 115 lLaA~ds~~-~g~~~vfavkialatlc~gk---------~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e 183 (434)
T KOG4301|consen 115 LLAAEDSEG-QGKQQVFAVKIALATLCGGK---------IKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFE 183 (434)
T ss_pred HHhhcCccC-CCCceeecchhhhhhhccch---------HHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhc
Confidence 567778888 88877655666677777777 7889999999994 7788888888888887743221
Q ss_pred -CCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccccc
Q psy17263 140 -ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVE 179 (188)
Q Consensus 140 -~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 179 (188)
.+..=-+..+...| -.+.+++.+.|+..+...+..
T Consensus 184 ~psfg~te~~a~~cf-----~qqrKv~Ln~fldtl~sdp~p 219 (434)
T KOG4301|consen 184 GPSFGYTELSARLCF-----LQQRKVELNQFLDTLMSDPPP 219 (434)
T ss_pred CCCcchHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCc
Confidence 11100011111112 235568888888888776543
No 143
>KOG4403|consensus
Probab=75.03 E-value=6.2 Score=31.84 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=58.4
Q ss_pred CCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTIL 154 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (188)
+...+-.||+......+....++ ...+.++.+-+.+|.|.+|.|+.+|=-.+|+.-+...-+...- -+
T Consensus 42 ds~at~nefc~~~~~~c~s~~dk-----lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr-------~~ 109 (575)
T KOG4403|consen 42 DSRATRNEFCEVDAPECKSEQDK-----LGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKR-------SE 109 (575)
T ss_pred CchhhhccchhcCCchhhcccch-----hhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhh-------hh
Confidence 55667777877666555433111 3567889999999999999999999988888632222111111 11
Q ss_pred HhccCCCCcccHHHHHHHHccccc
Q psy17263 155 EADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 155 ~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
.+-. .|..|+.+++.++...+.+
T Consensus 110 ~fH~-dD~~ItVedLWeaW~~Sev 132 (575)
T KOG4403|consen 110 KFHG-DDKHITVEDLWEAWKESEV 132 (575)
T ss_pred hccC-CccceeHHHHHHHHHhhhh
Confidence 2222 4566888888877766543
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.16 E-value=3.3 Score=28.06 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHHHHHHH--HhhhCCCCCCCcCHHHhccccccc--CC---ChhHHHHHHHhhcC
Q psy17263 26 QIERLYSR--FTSLDRGDCGTLSREDFLRIPELA--IN---PLGDRIVHVFFEEG 73 (188)
Q Consensus 26 ~~~~l~~~--F~~~D~~~~g~i~~~e~~~~~~~~--~~---~~~~~l~~~~d~~~ 73 (188)
-++++..- +..+ +..+.|+.+.|+.++... .. +.+.++|..|-...
T Consensus 30 vl~eF~~~g~~~~~--~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 30 VLKEFHGDGSLAKY--NPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp HHHHH-HTSGGGGG--EETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred HHHHHhcCCccccc--CCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 34455433 3333 355689999999864322 22 12355666655433
No 145
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.15 E-value=14 Score=21.63 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
++.+++..++.. .+..+++.++..+ ++.-+..+.-..+-+.+..+|.
T Consensus 14 l~d~~m~~if~l-~~~~vs~~el~a~----lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFAL-AGFEVSKAELSAW----LRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHH-cCCccCHHHHHHH----HCCCCCccccccChHHHHHHHH
Confidence 455678888887 6888888888888 7775555444455555555554
No 146
>PLN02223 phosphoinositide phospholipase C
Probab=73.90 E-value=26 Score=29.51 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHH---HHHhC-CCCCHHHHHHHHHHHHHHhcc----CCCCcccHHHHHHHHcc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVL---HMMVG-ANISEEQLTSIAERTILEADQ----NGDQMISFDEFCKALER 175 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l---~~~~~-~~~~~~~~~~~~~~~~~~~d~----~~~g~i~~~ef~~~l~~ 175 (188)
..+.++.+|..|- .++|..+.+.+.++| ....+ ...+.++.+.+++.++..... ...+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4578899999994 778899999999998 55344 356788888887776654321 22356999999999988
Q ss_pred cc
Q psy17263 176 TD 177 (188)
Q Consensus 176 ~~ 177 (188)
..
T Consensus 93 ~~ 94 (537)
T PLN02223 93 TE 94 (537)
T ss_pred cc
Confidence 53
No 147
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=73.57 E-value=15 Score=23.18 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17263 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 151 (188)
Q Consensus 78 i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 151 (188)
+.-.+|+.++..+.+.- ..+.+..+-..+-..+...++..++...+..+.+...+++++..+..+
T Consensus 20 vP~~Dy~PLlALL~r~L---------td~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRL---------TDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRAR 84 (96)
T ss_dssp B-HHHHHHHHHHHTTTS----------HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccC---------CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 66677777777776655 566777776666556666668899999998888888899998887443
No 148
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=72.99 E-value=7.8 Score=24.42 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCcccHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 120 DDAISRDELLAVLHMMVG-ANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
||.|+..|...+-..+.. .++++.+...+ +..+........++.+|.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAEL----LAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHH----HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 677888887766544222 35677777776 554444444446777777777654
No 149
>KOG4286|consensus
Probab=71.94 E-value=26 Score=30.62 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=90.2
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHHhhhCCCC-CCCcCHHHhccc-cc--------cc---CCChh-----HHHHHHHhhc
Q psy17263 12 EEIAQIQEET-VTPNQIERLYSRFTSLDRGD-CGTLSREDFLRI-PE--------LA---INPLG-----DRIVHVFFEE 72 (188)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~-~g~i~~~e~~~~-~~--------~~---~~~~~-----~~l~~~~d~~ 72 (188)
.-+..+++.. +.--.+.-..++|..++..+ .-.+...+...+ .. .+ --+.+ .-++..||+.
T Consensus 403 mKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~ 482 (966)
T KOG4286|consen 403 MKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTG 482 (966)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccC
Confidence 3344455444 44444455566666665543 334555555442 11 00 11111 3367889998
Q ss_pred CCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH------h-------CCC
Q psy17263 73 GCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMM------V-------GAN 139 (188)
Q Consensus 73 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~------~-------~~~ 139 (188)
. +|.|..-+|...+..+++.. ..+.++.+|...-.++.-.+ ...|..+|..+ + |.+
T Consensus 483 R-~g~irvls~ki~~i~lck~~---------leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN 551 (966)
T KOG4286|consen 483 R-TGRIRVLSFKIGIISLCKAH---------LEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN 551 (966)
T ss_pred C-CcceEEeeehhhHHHHhcch---------hHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC
Confidence 8 99999999999998888887 88899999999975655443 44454444331 1 234
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 140 ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 140 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
+.+. +... |. ..++-..|++..|+.++...+
T Consensus 552 veps-vrsC----F~--~v~~~pei~~~~f~dw~~~ep 582 (966)
T KOG4286|consen 552 IEPS-VRSC----FQ--FVNNKPEIEAALFLDWMRLEP 582 (966)
T ss_pred CChH-HHHH----HH--hcCCCCcchHHHHHHHhccCc
Confidence 4444 4444 66 234455699999999987654
No 150
>KOG4004|consensus
Probab=70.68 E-value=2.1 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=41.0
Q ss_pred HhhhCCC-CCCCcCHHHhccccc--ccCCChhHHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 34 FTSLDRG-DCGTLSREDFLRIPE--LAINPLGDRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 34 F~~~D~~-~~g~i~~~e~~~~~~--~~~~~~~~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
|-.+|.. .+|++|-.|+.-+.. +.+.....+++...|.++ +|.|.+.||...+....
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~n-d~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDN-DKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCCCccccccccccccccCCcccHHhhchhhhhcccCCC-CCceeHHHhhcccCcch
Confidence 3445654 488888888877532 223333477899999999 99999999998887543
No 151
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=68.30 E-value=6 Score=23.40 Aligned_cols=50 Identities=26% Similarity=0.428 Sum_probs=32.9
Q ss_pred CcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhC
Q psy17263 76 DRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVG 137 (188)
Q Consensus 76 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~ 137 (188)
--+.|......+....... ....+...|+.=..+.|+.+||...++...|
T Consensus 7 p~~~F~~L~~~l~~~l~~~------------~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPPS------------KMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3466666666666544333 3444444454446889999999999998756
No 152
>KOG2871|consensus
Probab=67.62 E-value=4 Score=32.27 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
..+.++++|..+|..++|+|+-.-++.++.. .....++...-.+ +-..+|+..-|.|-.++|...+.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~-~N~~vse~a~v~l---~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTA-LNRLVSEPAYVML---MRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHH-hcccccCHHHHHH---hcCccChhhcceEEecccccccc
Confidence 4788999999999999999999999999988 5644554433222 13345666666666666655443
No 153
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=66.31 E-value=16 Score=25.19 Aligned_cols=59 Identities=20% Similarity=0.434 Sum_probs=36.0
Q ss_pred HHHhhhCCCCCCCcCHHHhccc-ccccCCC---hh---HHHHHHHhhcCCCCcccHHHHHHHHHhhc
Q psy17263 32 SRFTSLDRGDCGTLSREDFLRI-PELAINP---LG---DRIVHVFFEEGCSDRVNFRQFMQVLARFR 91 (188)
Q Consensus 32 ~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~---~~---~~l~~~~d~~~~~g~i~~~ef~~~~~~~~ 91 (188)
..|..|-+.....|+-..|..+ ...++-. .. +-+|..+-..+ ...|+|++|..++..+.
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~-~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKG-ARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS--SEEEHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCC-CcccCHHHHHHHHHHHH
Confidence 3444444556678999999885 4433321 11 33666665555 67899999999888653
No 154
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=64.12 E-value=44 Score=22.93 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHHHHhccCCCCcccHHHHH
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVG-----------ANISEEQLTSIAERTILEADQNGDQMISFDEFC 170 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 170 (188)
.+.++.-.=|.+.+|.|+...|-.+|+.-+| ..++..+++.++..|++.+..++...=.|+..+
T Consensus 84 ~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~vw 158 (175)
T PF04876_consen 84 FLEHLLGGEDDSTNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEKVW 158 (175)
T ss_pred HHHHHhcCCcCCcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 3333333334455788998888888876333 367899999999999998877665444555443
No 155
>KOG2243|consensus
Probab=62.67 E-value=43 Score=31.98 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=39.5
Q ss_pred HhhhCCCCCCCcCHHHhcccccccCCChh---HHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 34 FTSLDRGDCGTLSREDFLRIPELAINPLG---DRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 34 F~~~D~~~~g~i~~~e~~~~~~~~~~~~~---~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
|..+|+++.|.|+..+|...+.-....+. +-++.-...+. +..++|++|+.-+..
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~de-nd~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADE-NDMFDYEDFVDRFHE 4120 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCc-cccccHHHHHHHhcC
Confidence 56789999999999999997543333222 33555566677 778999999876643
No 156
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.59 E-value=45 Score=22.19 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCC--CCcccHHHHHHHHHHHh-------CCCCC------HHHHHHHHHHHHHHhccCCCCcccHHH
Q psy17263 104 REQKLKFAFKMYDLDN--DDAISRDELLAVLHMMV-------GANIS------EEQLTSIAERTILEADQNGDQMISFDE 168 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~--~G~I~~~el~~~l~~~~-------~~~~~------~~~~~~~~~~~~~~~d~~~~g~i~~~e 168 (188)
....+.++|+....+. +..|+..++..++..++ +...+ +.-++-++.-++..+|++..|+|+.-.
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 4556777888776554 47899999999998754 11111 133555677889999999999999988
Q ss_pred HHHHHc
Q psy17263 169 FCKALE 174 (188)
Q Consensus 169 f~~~l~ 174 (188)
|..++.
T Consensus 119 ~KvaL~ 124 (127)
T PF09068_consen 119 FKVALI 124 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877664
No 157
>PLN02952 phosphoinositide phospholipase C
Probab=59.07 E-value=33 Score=29.34 Aligned_cols=55 Identities=5% Similarity=0.042 Sum_probs=41.0
Q ss_pred CCCcccHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccc
Q psy17263 119 NDDAISRDELLAVLHMMV-GANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDV 178 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 178 (188)
+.|.++..+|..+.+.+- ....+..+|..+ |..+..++ +.++.++|..+|....-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~l----f~~~~~~~-~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDV----FCKFSVGG-GHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHH----HHHHhCCC-CccCHHHHHHHHHHhCC
Confidence 468999999988777621 223367888888 88886544 57999999999987543
No 158
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.76 E-value=32 Score=22.17 Aligned_cols=57 Identities=18% Similarity=0.434 Sum_probs=34.7
Q ss_pred HHhcCCCCCcccHHHHHHHHHH---------HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q psy17263 113 KMYDLDNDDAISRDELLAVLHM---------MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173 (188)
Q Consensus 113 ~~~D~~~~G~I~~~el~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 173 (188)
+.||...+-+||.+++..++.. -.|..++..-+..+ +-.....+...++.+=+..++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QI----I~E~E~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQI----IAEEESGGEPVLSTDFLTQII 75 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHH----HHHHHhCCCCCCCHHHHHHHH
Confidence 4689999999999999998874 11334444444444 555544555555544444433
No 159
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=58.71 E-value=31 Score=24.17 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE 155 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (188)
....+..+++.+-.++...|+..+|...+- +|..+++++++..+..++..
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG--VGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG--VGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT--TT----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC--CCeEECHHHHHHHHHHHHHH
Confidence 567788888888666666899999999876 68889999999887776654
No 160
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=57.26 E-value=30 Score=27.32 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Q psy17263 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 173 (188)
.+|.||++|-...+.. .....+++.++.+ ++.++ |+-+||.+++
T Consensus 299 R~G~itReeal~~v~~-~d~~~~~~~~~~~----~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKE-YDGEFPKEDLEYF----LKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHH-hcccccHHHHHHH----HHHhC------CCHHHHHHHh
Confidence 3578888888877777 4555556666666 77766 6777777654
No 161
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=56.42 E-value=45 Score=20.55 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=31.5
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHH
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 172 (188)
.||.+||..+.+. .+..+++++.+.+ +..+-.+.-...+-++=..+
T Consensus 14 ~iT~~eLlkyskq-y~i~it~~QA~~I----~~~lr~k~inIfn~~~r~~l 59 (85)
T PF11116_consen 14 NITAKELLKYSKQ-YNISITKKQAEQI----ANILRGKNINIFNEQERKKL 59 (85)
T ss_pred cCCHHHHHHHHHH-hCCCCCHHHHHHH----HHHHhcCCCCCCCHHHHHHH
Confidence 6899999999998 7999999998887 55554444333333333333
No 162
>COG5562 Phage envelope protein [General function prediction only]
Probab=55.64 E-value=8.8 Score=25.74 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.5
Q ss_pred HHHhccCCCCcccHHHHHHHHcccccc
Q psy17263 153 ILEADQNGDQMISFDEFCKALERTDVE 179 (188)
Q Consensus 153 ~~~~d~~~~g~i~~~ef~~~l~~~~~~ 179 (188)
......+..|..+|++|+..+.+..+.
T Consensus 78 ~~al~~~qsGqttF~ef~~~la~AGVf 104 (137)
T COG5562 78 KTALRRHQSGQTTFEEFCSALAEAGVF 104 (137)
T ss_pred HHHHHHHhcCCccHHHHHHHHHhCCeE
Confidence 344456789999999999999987654
No 163
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=55.59 E-value=30 Score=18.25 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhc-CC-CCCcccHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYD-LD-NDDAISRDELLAVLHM 134 (188)
Q Consensus 104 ~~~~~~~~F~~~D-~~-~~G~I~~~el~~~l~~ 134 (188)
....+..+|..|- .+ ....++..||+.++..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4556777888884 33 3579999999999986
No 164
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=54.85 E-value=57 Score=21.27 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 109 KFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 109 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
-.+|-+.-.-++..+|.+++..+|.. .|....+..+..+ ++.+.. .+.++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~A-aGveVd~~~~~l~----~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSA-VNADVEDDVLDNF----FKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-cCCCccHHHHHHH----HHHHcC-----CCHHHHHH
Confidence 34566666677778999999999999 7999999988888 665532 35666654
No 165
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=53.04 E-value=25 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Q psy17263 105 EQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 157 (188)
Q Consensus 105 ~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 157 (188)
...++.+...- ...|+||.+++..+|.. ..++++.++.+ +..+.
T Consensus 6 ~~~i~~Li~~g--K~~G~lT~~eI~~~L~~---~~~~~e~id~i----~~~L~ 49 (82)
T PF03979_consen 6 EEAIKKLIEKG--KKKGYLTYDEINDALPE---DDLDPEQIDEI----YDTLE 49 (82)
T ss_dssp HHHHHHHHHHH--HHHSS-BHHHHHHH-S----S---HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHH--hhcCcCCHHHHHHHcCc---cCCCHHHHHHH----HHHHH
Confidence 34445544443 25789999999999864 45888888888 55544
No 166
>COG5562 Phage envelope protein [General function prediction only]
Probab=52.97 E-value=15 Score=24.70 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 63 DRIVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 63 ~~l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
.-+......+. +|..+|+||+..+..
T Consensus 75 ~~i~~al~~~q-sGqttF~ef~~~la~ 100 (137)
T COG5562 75 TLIKTALRRHQ-SGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHHh-cCCccHHHHHHHHHh
Confidence 34666677788 999999999988764
No 167
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=52.48 E-value=56 Score=20.40 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
||.|+..|...+-..+.....++.+...+ ...+..-.....++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREA----IRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHH----HHHHHHhCcCCCCHHHHHHHHHH
Confidence 56677777665544322233333333333 22221111111456666666655
No 168
>KOG3449|consensus
Probab=52.41 E-value=62 Score=20.95 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHH
Q psy17263 109 KFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172 (188)
Q Consensus 109 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 172 (188)
..+|-++..-++-..+..+++.+|.. +|....++.+..+ +..+. |+ +.+|.+..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~s-VG~E~d~e~i~~v----isel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILES-VGAEIDDERINLV----LSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHH-hCcccCHHHHHHH----HHHhc----CC-CHHHHHHH
Confidence 34677788888888999999999999 7999999998888 55543 22 55555543
No 169
>KOG3442|consensus
Probab=52.21 E-value=41 Score=22.30 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCc
Q psy17263 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM 163 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 163 (188)
.|.||.+|-.++|. +...++.++|+.--+++|+.=|+...|.
T Consensus 53 ~~~iTlqEa~qILn--V~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 53 NGKITLQEAQQILN--VKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccHHHHhhHhC--CCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 47799999999987 4668899999888777788888876665
No 170
>KOG4004|consensus
Probab=51.65 E-value=7.4 Score=28.05 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=38.4
Q ss_pred HHHhcCC-CCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHc
Q psy17263 112 FKMYDLD-NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALE 174 (188)
Q Consensus 112 F~~~D~~-~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 174 (188)
|-.+|.- .+|+++..||.-+-. .-++ ++..+..+|...|.|+||.|+..||-..+-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a----p~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA----PLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccC----Cccc---HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 5556653 588999888875421 1122 233445559999999999999999987653
No 171
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=51.47 E-value=1.1e+02 Score=23.35 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCCCCCcCHHHhccccc----ccCCChh-HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHH
Q psy17263 39 RGDCGTLSREDFLRIPE----LAINPLG-DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFK 113 (188)
Q Consensus 39 ~~~~g~i~~~e~~~~~~----~~~~~~~-~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 113 (188)
...+|+++..|...+.. ++.++.. ......|.... ....++.+|+..+...+..+... ....+..+|.
T Consensus 66 AkADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~k-~~~~~l~~~~~~~~~~~~~r~~l------~~~lL~~l~~ 138 (267)
T PRK09430 66 AKAKGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREGK-EPDFPLREKLRQFRSVCGGRFDL------LRMFLEIQIQ 138 (267)
T ss_pred HhcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcccHHH------HHHHHHHHHH
Confidence 35689999999985322 3444332 23556666555 66688999999887765433111 2223456666
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy17263 114 MYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 150 (188)
Q Consensus 114 ~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 150 (188)
+-= -||.++..|-.-+.+..-...++..++..+..
T Consensus 139 vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~ 173 (267)
T PRK09430 139 AAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLR 173 (267)
T ss_pred HHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 653 45779988855544432345688888777733
No 172
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=51.23 E-value=9.9 Score=25.33 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 119 NDDAISRDELLAVLHMM-VGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
-||.|+.+|...+...+ ....+++.+...+ +..++.-....+++.+|+..+..
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEEL----IELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHH----HHHHCHHHHHCCHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHH----HHHHHHHHhccccHHHHHHHHHH
Confidence 35666666666555442 1333444444444 33333222224555566555554
No 173
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=49.23 E-value=71 Score=20.69 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 110 FAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 110 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
.+|-+.-..++..+|.+++..+|.. .|....+..+..+ ++.+.. .+.++.+.-...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~A-aGveVe~~~~~lf----~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGS-VGVEVDDEKLNKV----ISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-cCCCccHHHHHHH----HHHHcC-----CCHHHHHHHhHh
Confidence 4566666678889999999999999 7999999888887 665532 456666664433
No 174
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=44.72 E-value=66 Score=19.43 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCC-CCcccHHHHHHHH
Q psy17263 125 RDELLAVLHMMVGANISEEQLTSIAERTILEADQNG-DQMISFDEFCKAL 173 (188)
Q Consensus 125 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 173 (188)
.+++...| .|...+.+.+.+. +..++.+. -+.++.+++++++
T Consensus 44 i~~le~~L---~G~~~~~~~i~~~----l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL---IGCPYDREAIKEA----LNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH---TTCBSSHHHHHHH----HHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCCCHHHHHHH----HHHhCHhhccccCCHHHHHHhC
Confidence 55666655 6889999999888 77776543 4579999998875
No 175
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=44.43 E-value=20 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.471 Sum_probs=19.8
Q ss_pred HHhcCCCCCcccHHHHHHHHHH
Q psy17263 113 KMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 113 ~~~D~~~~G~I~~~el~~~l~~ 134 (188)
++||...+.+||.+++..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999875
No 176
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=44.09 E-value=70 Score=20.76 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17263 124 SRDELLAVLHMMVGANISEEQLTSIAER 151 (188)
Q Consensus 124 ~~~el~~~l~~~~~~~~~~~~~~~~~~~ 151 (188)
+.+|++.++.. ....+++++++.+++.
T Consensus 80 ~~dElrai~~~-~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAK-ERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHH-hccCCCHHHHHHHHHH
Confidence 45566666655 3556666666666443
No 177
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=43.97 E-value=84 Score=20.01 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC---CCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQN---GDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l~~~ 176 (188)
....++.-|..+-. +|.++...|-.++ |.+-+++=..++ |.++... ....|+.+|+..+..+.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eL----FdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGEL----FDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHH----HHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHH----HHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 46677788888866 8999999999875 555455544555 5554321 24568988887776543
No 178
>KOG0506|consensus
Probab=43.36 E-value=1e+02 Score=25.66 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc-----CCCCcccHHHHHHHHccc
Q psy17263 110 FAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ-----NGDQMISFDEFCKALERT 176 (188)
Q Consensus 110 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~ef~~~l~~~ 176 (188)
-+|..|-..+++.|+..-|..+|+. .|..-++..+..+.++| +..+. ...+.++-+.|.+++..+
T Consensus 90 LLFyLiaegq~ekipihKFiTALks-tGLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKS-TGLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHH-cCCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhccc
Confidence 4688886666799999999999999 89988888888886663 33332 234569999999988765
No 179
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=43.06 E-value=62 Score=21.40 Aligned_cols=89 Identities=15% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCCCCcCHHHhccccc-----ccCCChh-HHHHHHHhhcCCCCcccHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHH
Q psy17263 40 GDCGTLSREDFLRIPE-----LAINPLG-DRIVHVFFEEGCSDRVNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFK 113 (188)
Q Consensus 40 ~~~g~i~~~e~~~~~~-----~~~~~~~-~~l~~~~d~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 113 (188)
..+|.++..|...+.. .+..+.. ..+...+.... ...+++.+++..+....... ....-++.++.
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------~r~~ll~~l~~ 105 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELK-QEPIDLEELLRELRDSLSPE--------EREDLLRMLIA 105 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHH-HHCCHHHHHHHHHCTS--HH--------HHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-hccccHHHHHHHHHHhhchH--------HHHHHHHHHHH
Confidence 3589999999887532 2333333 55666666555 55677888887766532222 24566777788
Q ss_pred HhcCCCCCcccHHHHHHHHHHHhC
Q psy17263 114 MYDLDNDDAISRDELLAVLHMMVG 137 (188)
Q Consensus 114 ~~D~~~~G~I~~~el~~~l~~~~~ 137 (188)
+.-.||.-.-...++..-+...++
T Consensus 106 ia~ADG~~~~~E~~~l~~ia~~L~ 129 (140)
T PF05099_consen 106 IAYADGEISPEEQEFLRRIAEALG 129 (140)
T ss_dssp HCTCTTC-SCCHHHHHHHHHHHCT
T ss_pred HHhcCCCCCHHHHHHHHHHHHHcC
Confidence 877665433334444444443334
No 180
>KOG2301|consensus
Probab=42.78 E-value=11 Score=35.98 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccccc-----ccCCChhHH--HHHHHhhcCCCCcccHHHHHHHHHh
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPE-----LAINPLGDR--IVHVFFEEGCSDRVNFRQFMQVLAR 89 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~-----~~~~~~~~~--l~~~~d~~~~~g~i~~~ef~~~~~~ 89 (188)
+++.+++.+++++..+|++.+|+|...++..++. ++.....++ +...+.... +++|++.+-+..+..
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~-gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVS-GDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCC-CCeeehhhHHHHHHH
Confidence 8899999999999999999999999999888533 333332222 222222344 788998887776654
No 181
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=42.36 E-value=44 Score=20.67 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc--cCCCCcccHHHHH
Q psy17263 124 SRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFC 170 (188)
Q Consensus 124 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~ 170 (188)
+..||...+.. -...++..++..+++.++..+- ....+.|...+|-
T Consensus 2 ~k~eli~~i~~-~~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG 49 (94)
T TIGR00988 2 TKSELIERIAT-QQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFG 49 (94)
T ss_pred CHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCcE
Confidence 56777777765 2445777777776655555541 2334456655553
No 182
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=41.53 E-value=71 Score=18.51 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.++.|+.+=+ .+-.|+.+-++..+.. .|..+|+..+..+
T Consensus 18 ar~~~~k~l~-~NPpine~mir~M~~Q-MG~kpSekqi~Q~ 56 (64)
T PF03672_consen 18 ARKYMEKQLK-ENPPINEKMIRAMMMQ-MGRKPSEKQIKQM 56 (64)
T ss_pred HHHHHHHHHH-HCCCCCHHHHHHHHHH-hCCCccHHHHHHH
Confidence 3444544422 2447999999999999 6999999999988
No 183
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=40.88 E-value=33 Score=19.62 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.|+.++|..+|.. ....++.++++..
T Consensus 29 ~it~~DF~~Al~~-~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKK-VKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHT-CGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 5889999999998 6888888887764
No 184
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=40.05 E-value=87 Score=21.16 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=36.5
Q ss_pred CCCcccHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHHHHhccCCCC-cccHHHHHHHH
Q psy17263 119 NDDAISRDELLAVLHMMVG---------ANISEEQLTSIAERTILEADQNGDQ-MISFDEFCKAL 173 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~l 173 (188)
|+-.||.+||.+++.. -. ..++++++..+ .+.+...+.+ .+++.|.+++-
T Consensus 80 Gd~~Ls~eEf~~L~~~-~~~LV~~rg~WV~ld~~~l~~~----~~~~~~~~~~~~lt~~e~Lr~~ 139 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQ-KRPLVRFRGRWVELDPEELRRA----LAFLEKAPKGEKLTLAEALRAA 139 (141)
T ss_pred CCEECCHHHHHHHHHc-CCCeEEECCEEEEECHHHHHHH----HHHHHhccccCCCCHHHHHHHh
Confidence 5668999999999876 22 15678888888 7777665554 48988877653
No 185
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=39.10 E-value=70 Score=19.62 Aligned_cols=50 Identities=14% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHhhcccchhh-----------hhhhchHHHHHHHHHHHhcCCCCCccc
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSK-----------ENKLNSREQKLKFAFKMYDLDNDDAIS 124 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~F~~~D~~~~G~I~ 124 (188)
+..++|+++..-+...++..... ..-.-.+...+.++|+.+-.|++-.++
T Consensus 17 d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEE
Confidence 34566777766666555443221 111223567888888888877765443
No 186
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=38.30 E-value=64 Score=18.64 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCC
Q psy17263 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG 160 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (188)
.++.++..++...+.. .+..++++.+... ++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~-~g~~~se~avRrr----Lr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKL-RGEELSEEAVRRR----LRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHh-cChhhhHHHHHHH----HHHHHHCC
Confidence 4567999999999988 5888888888777 88887765
No 187
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=37.19 E-value=50 Score=17.72 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred CcHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCC
Q psy17263 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGT 44 (188)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~ 44 (188)
+|.+|+.++-...-...+++.|+..=-.+..+.+|+
T Consensus 3 LT~~El~elTG~k~~~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 3 LTDEELQELTGYKRPSKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCeeEECCCCC
Confidence 667777777776566666666665544444555553
No 188
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=36.35 E-value=1e+02 Score=23.43 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=32.9
Q ss_pred CCCCcccHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcccc
Q psy17263 118 DNDDAISRDELLAVLHM-MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTD 177 (188)
Q Consensus 118 ~~~G~I~~~el~~~l~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 177 (188)
--||.|+..|+. .... +-...+++++-... ..+|+..- ....++++|+.-+...+
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a-~~lf~~~k---~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAA-QQAFREGK---EPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHH-HHHHHHhc---ccCCCHHHHHHHHHHHh
Confidence 347899999998 3333 22345676663333 22255432 33378888888887654
No 189
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=35.56 E-value=1e+02 Score=18.98 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=19.6
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
|+.++++.+.+. ....+++++++.+
T Consensus 1 i~~~~v~~lA~L-a~L~l~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKL-ARLELSEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHH-hCCCCCHHHHHHH
Confidence 567888887776 6888998887766
No 190
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=35.27 E-value=1.1e+02 Score=19.03 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=39.3
Q ss_pred CCCcccccCcHHHHHHHHhcc---CCHHHHHHHHHHHhhhCC--CCCCCcCHHHhcccccccCCChhHHHHHHHhhcCCC
Q psy17263 1 MGNRSSLLLREEEIAQIQEET---VTPNQIERLYSRFTSLDR--GDCGTLSREDFLRIPELAINPLGDRIVHVFFEEGCS 75 (188)
Q Consensus 1 mg~~~s~~~~~~~~~~~~~~~---~~~~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~~~~~~~~~~~~l~~~~d~~~~~ 75 (188)
||...|+++=...++.+.+.. ++.+++..+........+ -.+|.|+.+.+..+ -+++-..+-..+ .
T Consensus 1 MG~~~S~~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv--------G~~l~~~~~~~~-~ 71 (90)
T PF02337_consen 1 MGQSHSKQPFVSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV--------GEELKRYYAEQG-P 71 (90)
T ss_dssp --SSS-HHHHHHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH--------HHHHHHHHHHCS-T
T ss_pred CCccchhhHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH--------HHHHHHHHHHhC-C
Confidence 788888744456777777766 677777777666655433 24677887777775 123333344455 5
Q ss_pred CcccHHHHH
Q psy17263 76 DRVNFRQFM 84 (188)
Q Consensus 76 g~i~~~ef~ 84 (188)
+.|....|.
T Consensus 72 ~~Ip~~~~~ 80 (90)
T PF02337_consen 72 EKIPIQAFP 80 (90)
T ss_dssp TTS-CHHHH
T ss_pred CCCChhHHH
Confidence 566555443
No 191
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=35.08 E-value=1.2e+02 Score=22.10 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=27.6
Q ss_pred hcCCCCCcccHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHH
Q psy17263 115 YDLDNDDAISRDELLAVLHMMV-----------GANISEEQLTSIAERTI 153 (188)
Q Consensus 115 ~D~~~~G~I~~~el~~~l~~~~-----------~~~~~~~~~~~~~~~~~ 153 (188)
|-.-..|.|+.++|+.++..+. .+.++.++..+++..+|
T Consensus 34 ~kdak~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~ 83 (215)
T PF09873_consen 34 YKDAKPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLF 83 (215)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHH
Confidence 4445689999999999987632 45677777777655443
No 192
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=35.07 E-value=80 Score=18.27 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=23.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy17263 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 150 (188)
Q Consensus 112 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 150 (188)
|..+..+..+.+|..++..+..-+-..+++++.+...++
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~ 40 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALK 40 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444544444577877777766553344566777777633
No 193
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=34.91 E-value=90 Score=17.74 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMY--DLDNDDAISRDELLAVLHMM 135 (188)
Q Consensus 104 ~~~~~~~~F~~~--D~~~~G~I~~~el~~~l~~~ 135 (188)
+.+++....+++ +. +...++.+|++.+|...
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 456677777777 43 44467778888777663
No 194
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=34.03 E-value=93 Score=17.66 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=20.5
Q ss_pred CcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 121 DAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 121 G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
-.+|.+|+...+.. ++..++.+++..+
T Consensus 8 ~~lTeEEl~~~i~~-L~~~~~~~dm~~I 34 (61)
T TIGR01639 8 KKLSKEELNELINS-LDEIPNRNDMLII 34 (61)
T ss_pred HHccHHHHHHHHHh-hcCCCCHHHHHHH
Confidence 35788888888888 6777777777666
No 195
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=33.96 E-value=1.4e+02 Score=19.84 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy17263 103 SREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIA 149 (188)
Q Consensus 103 ~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 149 (188)
....++..+|++|- +|.|+.+.+..++...-|..++..++..++
T Consensus 34 tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~ 77 (122)
T PF06648_consen 34 TFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLY 77 (122)
T ss_pred hHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHH
Confidence 35677888888885 345888888888876334688888877763
No 196
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=33.77 E-value=83 Score=17.01 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy17263 120 DDAISRDELLAVLHMMVGANISEEQLTSIAE 150 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 150 (188)
.+.++...+...|..-.|..+++++....++
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~ 46 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVD 46 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 3568999999999765688999999876633
No 197
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=32.88 E-value=71 Score=18.57 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy17263 111 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAER 151 (188)
Q Consensus 111 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 151 (188)
+|+.+-.+..|.+|..+...+-.-+-..+++++-+..+++.
T Consensus 1 ~~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~ 41 (77)
T PF07261_consen 1 LFEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEY 41 (77)
T ss_dssp HHHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35667667778999999888877643346777777777333
No 198
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=32.68 E-value=78 Score=23.96 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=33.8
Q ss_pred CcccHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 121 DAISRDELLAVLHM----MVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 121 G~I~~~el~~~l~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
-.++=.+|..+|.. ..+.+++++++..+.++++..-....++.|++..|.+
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 35666777777753 4588999999999988877765555678899999965
No 199
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=32.54 E-value=43 Score=23.03 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcCHHHhccc
Q psy17263 24 PNQIERLYSRFTSLDRGDCGTLSREDFLRI 53 (188)
Q Consensus 24 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~ 53 (188)
..++..+......+|.++.++||.++++.+
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~ 94 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTA 94 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHH
Confidence 446777888888888998899999999984
No 200
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=32.31 E-value=1e+02 Score=20.75 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCcccHHHHHHHHcccccccc
Q psy17263 161 DQMISFDEFCKALERTDVEQK 181 (188)
Q Consensus 161 ~g~i~~~ef~~~l~~~~~~~~ 181 (188)
+|.|+..+|++.|..+....+
T Consensus 42 ng~IsVreFVr~La~S~~yr~ 62 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRK 62 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHH
Confidence 678999999999999877655
No 201
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=31.98 E-value=1e+02 Score=22.01 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=21.0
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 115 YDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 115 ~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
+..+.+|++..+||...+.. -+..++.+++..+
T Consensus 25 L~~d~~G~v~v~dLL~~~~~-~~~~~t~~~i~~v 57 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRF-KGLWVTEEDIREV 57 (186)
T ss_dssp ----TT--EEHHHHHHHHHH-T-TT--HHHHHHH
T ss_pred CccCCCCCEeHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 35688999999999999887 5777888888887
No 202
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=31.73 E-value=74 Score=19.45 Aligned_cols=32 Identities=3% Similarity=0.006 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI 53 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~ 53 (188)
||...+..=.=....++++++|+++.+-+..+
T Consensus 17 FSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 17 FGDVNLHKDRFLREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred cchhhcccCHHHHHHhcCCCCCCEeHHHHhcc
Confidence 77777765554556677788999999888775
No 203
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=31.58 E-value=1.8e+02 Score=21.54 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=36.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Q psy17263 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 157 (188)
Q Consensus 112 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 157 (188)
+.++=-|++|.|....|...+.. +..+++..|+..+.++ ++.++
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~K-Lp~~lt~~ev~~v~~R-L~AL~ 200 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMK-LPRNLTKAEVDAVNKR-LRALG 200 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHh-CCccCCHHHHHHHHHH-HHHhc
Confidence 45555688999999999999999 7889999999988666 66666
No 204
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=31.49 E-value=39 Score=20.12 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCCCcccHHHHHHHHHH
Q psy17263 118 DNDDAISRDELLAVLHM 134 (188)
Q Consensus 118 ~~~G~I~~~el~~~l~~ 134 (188)
-..|++..+||..++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 46899999999999865
No 205
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=31.45 E-value=55 Score=22.44 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=26.4
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHhhhCCCCCCC
Q psy17263 11 EEEIAQIQEET--VTPNQIERLYSRFTSLDRGDCGT 44 (188)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~l~~~F~~~D~~~~g~ 44 (188)
.++++...... -|..++.+|.++|..++.+++|.
T Consensus 31 ~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~ 66 (147)
T cd07909 31 SEELKEAFESHLEETEGQVERLEQIFESLGEKPEGK 66 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 35666655555 78899999999999998888774
No 206
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=30.53 E-value=1.2e+02 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.4
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 116 DLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 116 D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
-.|.+|.+..++|...++. .+..++.+.+.++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~-~~~~~t~~~l~~v 58 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAK-AYKWVTRELLEAV 58 (179)
T ss_pred ccCCCCCEEHHHHHHHHHH-ccCCCCHHHHHHH
Confidence 4578999999999998876 4567888888877
No 207
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.34 E-value=46 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
..+..+++|-.||...=-..+.+++.++|.. .|.--+...|+..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d-~gIIR~r~KI~A~ 96 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLAD-AGIIRNRGKIKAT 96 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhC-cchhhhHHHHHHH
Confidence 6789999999999998888999999999987 5654455555554
No 208
>KOG2301|consensus
Probab=30.12 E-value=20 Score=34.37 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=48.9
Q ss_pred hhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 100 KLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANIS----EEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 100 ~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
..+...+...+++..||.+..|+|...++...++. +...+. ... + ++.-.+....+|.|++.+-+-++.+
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~-L~ppL~~~k~~~~-k----li~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRS-LDPPLDLGKPNKR-K----LISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHh-cCCccccCCCCCc-e----eeeeecCcCCCCeeehhhHHHHHHH
Confidence 34456778889999999999999999999999998 333221 111 1 1133344456667777777776666
Q ss_pred ccc
Q psy17263 176 TDV 178 (188)
Q Consensus 176 ~~~ 178 (188)
..+
T Consensus 1485 r~l 1487 (1592)
T KOG2301|consen 1485 RVL 1487 (1592)
T ss_pred Hhh
Confidence 543
No 209
>PRK00523 hypothetical protein; Provisional
Probab=29.95 E-value=1.3e+02 Score=17.94 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 156 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (188)
-.+..|+.+=+ .+-.|+.+-++..+.. .|..+|+..+.++ ++.+
T Consensus 25 iark~~~k~l~-~NPpine~mir~M~~Q-MGqKPSekki~Q~----m~~m 68 (72)
T PRK00523 25 VSKKMFKKQIR-ENPPITENMIRAMYMQ-MGRKPSESQIKQV----MRSV 68 (72)
T ss_pred HHHHHHHHHHH-HCcCCCHHHHHHHHHH-hCCCccHHHHHHH----HHHH
Confidence 33445555533 3347999999999999 6999999999988 6655
No 210
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=29.53 E-value=1.6e+02 Score=18.93 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
||.+++..+|.. .|...++..+..+ ++.+.. .+.++.+.-...
T Consensus 17 ~ta~~I~~IL~a-aGveVe~~~~~~~----~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSA-AGAEIEPERVKLF----LSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHH-cCCCcCHHHHHHH----HHHHcC-----CCHHHHHHHHHh
Confidence 999999999999 7999999998888 666532 466776655543
No 211
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=29.15 E-value=83 Score=16.15 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=16.0
Q ss_pred CcHHHHHHHHhcc-CCHHHHHHHH
Q psy17263 9 LREEEIAQIQEET-VTPNQIERLY 31 (188)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~l~ 31 (188)
.+.++-..+.+.+ +|..++..+-
T Consensus 11 Ps~~ek~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 11 PSKEEKEELAKQTGLSRKQISNWF 34 (40)
T ss_dssp --HHHHHHHHHHHTS-HHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888888888 9999887653
No 212
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=28.94 E-value=98 Score=17.49 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCC----cCHHHhccc-ccccCC
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGT----LSREDFLRI-PELAIN 59 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~----i~~~e~~~~-~~~~~~ 59 (188)
||+++...+...|.. .|+ ++..+...+ ..+|..
T Consensus 8 Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 8 FTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999976 455 666655553 444443
No 213
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=28.69 E-value=1.5e+02 Score=18.66 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.|+.++++++.+. ....+++++++.+
T Consensus 2 ~i~~e~v~~la~L-arL~lseee~e~~ 27 (96)
T COG0721 2 AIDREEVKHLAKL-ARLELSEEELEKF 27 (96)
T ss_pred ccCHHHHHHHHHH-hhcccCHHHHHHH
Confidence 5788889888877 6888998888766
No 214
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=28.50 E-value=1.3e+02 Score=19.59 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHHhhcccchhh------hhhhchHHHHHHHHHHHhcCCCCCcc
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSK------ENKLNSREQKLKFAFKMYDLDNDDAI 123 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~------~~~~~~~~~~~~~~F~~~D~~~~G~I 123 (188)
.+.+++.+|+..+.......... .+..+.....+..+|+.+- |.||.+
T Consensus 48 p~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~k-d~DGfL 101 (112)
T cd01611 48 PSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHK-DEDGFL 101 (112)
T ss_pred cCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhC-CCCCEE
Confidence 34566666766665543322221 2235567788899999884 567764
No 215
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=28.36 E-value=76 Score=19.74 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc--cCCCCcccHHHHH
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFC 170 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~ 170 (188)
++..||...+... .+++..+++.+++.++..+- ....+.|.+.+|-
T Consensus 2 mtk~eli~~ia~~--~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG 49 (96)
T TIGR00987 2 LTKAEMSEYLFDE--LGLSKREAKELVELFFEEIRRALENGEQVKLSGFG 49 (96)
T ss_pred CCHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCCE
Confidence 6778888877763 35787777777666565542 2334456655553
No 216
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=28.22 E-value=1.5e+02 Score=18.27 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHhhcccchhh------hh-hhchHHHHHHHHHHHhcCCCCCcc
Q psy17263 75 SDRVNFRQFMQVLARFRPIKKSK------EN-KLNSREQKLKFAFKMYDLDNDDAI 123 (188)
Q Consensus 75 ~g~i~~~ef~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~F~~~D~~~~G~I 123 (188)
.+..++.+|+.++.......+.. .+ ..+...+.+..+|+.|| .||.+
T Consensus 23 ~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~--~dGfL 76 (87)
T cd01612 23 SATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFG--TNGEL 76 (87)
T ss_pred CCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcC--CCCEE
Confidence 34566777777766544432221 12 24456689999999996 45543
No 217
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=27.94 E-value=1e+02 Score=18.51 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI 53 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~ 53 (188)
||...+..=.-+-..+..+++|+|+...+..+
T Consensus 12 FSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F 43 (76)
T cd08029 12 FSDSNLPTDKFLWTLTGGSNNGWVPIKTIASF 43 (76)
T ss_pred cCHhhhccCHHHHHHhccCCCCcEehHHHhCc
Confidence 66666554333334455688999999988885
No 218
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=27.63 E-value=98 Score=19.49 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=34.3
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccC
Q psy17263 10 REEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAI 58 (188)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~ 58 (188)
+.+.+..+....+|++++..+...+..+..=-.|-+|..|+....+.+.
T Consensus 21 ~~~~l~~~l~~lLTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~lGiS~ 69 (94)
T TIGR01321 21 SEDDMQLLLELILTRSEREDLGDRIRIVNELLNGNMSQREIASKLGVSI 69 (94)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCh
Confidence 4456666666669999999999998876421236788888888654433
No 219
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=1.4e+02 Score=17.66 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 108 LKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 108 ~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.++.+..+=++ +-.|+.+-++..+.. .|..+|+..+.++
T Consensus 25 ark~~~k~lk~-NPpine~~iR~M~~q-mGqKpSe~kI~Qv 63 (71)
T COG3763 25 ARKQMKKQLKD-NPPINEEMIRMMMAQ-MGQKPSEKKINQV 63 (71)
T ss_pred HHHHHHHHHhh-CCCCCHHHHHHHHHH-hCCCchHHHHHHH
Confidence 34455544333 347999999999999 6999999999988
No 220
>PLN02859 glutamine-tRNA ligase
Probab=27.43 E-value=3.1e+02 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILE 155 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (188)
....+..+++.+-..+...++..+|...+- +|..+++++|+..|..++..
T Consensus 85 T~~Ql~AA~kYl~~~~~~~~d~~~Fek~CG--VGV~VT~EqI~~~V~~~i~~ 134 (788)
T PLN02859 85 TPAQLEAAFSFFSSTGPESFDLNKFEEACG--VGVVVSPEDIEAAVNEVFEE 134 (788)
T ss_pred CHHHHHHHHHHHHhCCCCccCHHHHHHhCC--CCEEECHHHHHHHHHHHHHh
Confidence 467888889888666666899999988765 57888999999987766654
No 221
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.42 E-value=75 Score=15.46 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=10.7
Q ss_pred CCcccHHHHHHHHHH
Q psy17263 120 DDAISRDELLAVLHM 134 (188)
Q Consensus 120 ~G~I~~~el~~~l~~ 134 (188)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777777665
No 222
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.84 E-value=1.5e+02 Score=17.63 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE 150 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~ 150 (188)
..+.++.-|...= +.|+..|+..+=+.++..+++.+++..+|+
T Consensus 14 ~~e~vk~~F~~~~----~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 14 DPEEVKEEFKKLF----SDVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 4566666665331 258888888777776677899999888843
No 223
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.60 E-value=97 Score=16.73 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc-ccccCCC
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI-PELAINP 60 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-~~~~~~~ 60 (188)
+|+.++..|...|.. +.+++..+...+ ..+++..
T Consensus 7 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~ 41 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTE 41 (57)
T ss_dssp SSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSH
T ss_pred CCHHHHHHHHHHHHH-----hccccccccccccccccccc
Confidence 889999999999975 667777777775 5555544
No 224
>KOG1954|consensus
Probab=26.58 E-value=97 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
...++|..+. --+|+|+-..-+.-+ +...++...+-.+ .+..|.|.||.++-+||.-
T Consensus 445 ~yde~fy~l~-p~~gk~sg~~ak~~m---v~sklpnsvlgki----wklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLS-PVNGKLSGRNAKKEM---VKSKLPNSVLGKI----WKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccc-ccCceeccchhHHHH---HhccCchhHHHhh----hhhhcCCcccCcCHHHHHH
Confidence 3445666553 446777776555544 4556777766666 9999999999999999963
No 225
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=26.50 E-value=1.5e+02 Score=17.63 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCC--CCcccHHHHHHHHc
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNG--DQMISFDEFCKALE 174 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~l~ 174 (188)
-...+...|++. |..=..|-...+.. .-.++++.+.+.+++.++..++..+ +..|+.+....++.
T Consensus 5 lrk~I~~~FkL~-----Gl~Lr~eA~~~l~~-~l~~~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~Av~ 71 (73)
T PF12213_consen 5 LRKKIVKAFKLR-----GLSLRSEASKYLAE-QLQSLSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIESAVK 71 (73)
T ss_dssp HHHHHHHHHHHT-----T-EE-HHHHHHHHH-HTTTS-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHHHH
T ss_pred HHHHHHHHhhhc-----cceecHHHHHHHHH-HHccCCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 345677788876 56767777777666 3455666777777788899988764 55677777766654
No 226
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.24 E-value=1.3e+02 Score=19.63 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAE 150 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~ 150 (188)
-|.+|++.++.. -+..++++++..+++
T Consensus 80 ~t~~ElRsIla~-e~~~~s~E~l~~Ild 106 (114)
T COG1460 80 RTPDELRSILAK-ERVMLSDEELDKILD 106 (114)
T ss_pred CCHHHHHHHHHH-ccCCCCHHHHHHHHH
Confidence 367888888887 688888888888843
No 227
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=26.13 E-value=59 Score=18.29 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=15.5
Q ss_pred cCcHHHHHHHHhcc-CCHHHHHHHH
Q psy17263 8 LLREEEIAQIQEET-VTPNQIERLY 31 (188)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~l~ 31 (188)
.+.+.++..|..++ +|.+++..+-
T Consensus 22 ~L~E~DL~~L~~kS~ms~qqVr~WF 46 (56)
T PF11569_consen 22 QLQEEDLDELCDKSRMSYQQVRDWF 46 (56)
T ss_dssp ---TTHHHHHHHHTT--HHHHHHHH
T ss_pred CccHhhHHHHHHHHCCCHHHHHHHH
Confidence 46678888898888 9888887763
No 228
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=26.06 E-value=2.7e+02 Score=20.41 Aligned_cols=49 Identities=14% Similarity=0.374 Sum_probs=20.0
Q ss_pred CcHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcC--HHHhccc-ccccCCC
Q psy17263 9 LREEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLS--REDFLRI-PELAINP 60 (188)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~--~~e~~~~-~~~~~~~ 60 (188)
...+++.+++.. -++...+.+.|..--++.-+.-+ ..+|..+ ..+|..|
T Consensus 23 ~a~~dl~~L~~q---a~~~~~~l~~fa~k~~~~i~~~~~~r~~f~~~~~~lGvdp 74 (223)
T PF04157_consen 23 LAFQDLEALMSQ---AKDFVELLENFARKHKSEIKSDPEFRSQFQSMCASLGVDP 74 (223)
T ss_dssp CCHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCCCSHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhhccccCCchHHHHHHHHHHHcCCCc
Confidence 455666666663 22233333334321122222111 1356663 6666665
No 229
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.02 E-value=1.9e+02 Score=20.61 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHhccCCCCcccHHHHH
Q psy17263 104 REQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAE--RTILEADQNGDQMISFDEFC 170 (188)
Q Consensus 104 ~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~g~i~~~ef~ 170 (188)
..+.++.+|.-||...=-..+.+++.+++.. .+.--+...|..++. +++..+... ++.+|+
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d-~~IIRnr~KI~Avi~NA~~~l~i~~e-----sf~~yl 113 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQD-DGIIRNRGKIEATIANARAALQLEQN-----DLVEFL 113 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC-ccchhhHHHHHHHHHHHHHHHHHHHc-----cHHHHH
Confidence 5788999999999988778899999998876 454445555666643 333333211 666666
No 230
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=24.97 E-value=2e+02 Score=18.58 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHH
Q psy17263 118 DNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFC 170 (188)
Q Consensus 118 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 170 (188)
.+. .||.+.+..+|.. .|....+..+..+ ++.+.. ++.++.+
T Consensus 13 ~g~-~it~e~I~~IL~A-AGveVee~~~k~~----v~aL~G-----kdIeElI 54 (106)
T PRK06402 13 AGK-EINEDNLKKVLEA-AGVEVDEARVKAL----VAALED-----VNIEEAI 54 (106)
T ss_pred cCC-CCCHHHHHHHHHH-cCCCccHHHHHHH----HHHHcC-----CCHHHHH
Confidence 444 8999999999999 7999999988888 665532 4555555
No 231
>smart00708 PhBP Insect pheromone/odorant binding protein domains.
Probab=24.85 E-value=1.6e+02 Score=17.83 Aligned_cols=52 Identities=10% Similarity=0.215 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc-CCCCcccHHHHHHHHcc
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAERTILEADQ-NGDQMISFDEFCKALER 175 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~ 175 (188)
++.+++...... .......+.+..++..++..+.. +++|.+..+.+...+..
T Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~kC~~~C~~~~~g~~~~~g~~~~~~~~~~~~~ 63 (103)
T smart00708 11 VSEADLADFVKF-WREDYPDEKVKCYIKCVLKKLGLVDDDGKFDAEKLLEQLKA 63 (103)
T ss_pred cCHHHHHHHHHh-cccCCcCcccCcHHHHHHHHcCCcCCCCCcCHHHHHHHHHc
Confidence 555555555543 12221234455555555776663 44677888888777664
No 232
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=24.53 E-value=62 Score=18.42 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI 53 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~ 53 (188)
|++..+..=.-....++.+++|+|+...+..+
T Consensus 9 FSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 9 FSDENLPRDKFLRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp TSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTS
T ss_pred cCHHHhCcCHHHHHHHHhcCCCcEeHHHHHch
Confidence 55555544333445567788999999988885
No 233
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.27 E-value=1.8e+02 Score=17.69 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=30.7
Q ss_pred HHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhcc-ccc-ccCCChhHHHHHHHhh
Q psy17263 17 IQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLR-IPE-LAINPLGDRIVHVFFE 71 (188)
Q Consensus 17 ~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~-~~~-~~~~~~~~~l~~~~d~ 71 (188)
+.+..++.+++..++++|+.+=..+ .+.++... +.. ....+...+++..+..
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~~~~v~~~~~Fi~~ 76 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPDSPEVREIVDFIRN 76 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccCCHHHHHHHHHHHh
Confidence 3445599999999999998864432 45666555 333 3344545555555543
No 234
>PRK01381 Trp operon repressor; Provisional
Probab=24.22 E-value=1.3e+02 Score=19.16 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=36.4
Q ss_pred cHHHHHHHHhccCCHHHHHHHHHHHhhhCCCCCCCcCHHHhcccccccCC
Q psy17263 10 REEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59 (188)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~~~~~~~ 59 (188)
....+..+....+|+++...+...+..+..=-.|.+|..|+...++.+..
T Consensus 21 ~~~~~~~~l~~llTp~Er~al~~R~~I~~~L~~g~~sQREIa~~lGvSia 70 (99)
T PRK01381 21 EEDLHLPLLTLLLTPDEREALGTRVRIVEELLRGELSQREIKQELGVGIA 70 (99)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhCCcee
Confidence 44556666666699999999999988764434678888998886555543
No 235
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=24.04 E-value=1.6e+02 Score=17.90 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHcc
Q psy17263 130 AVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175 (188)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 175 (188)
..|...-|..++++..+.+ -+.++......|+++|++.+...
T Consensus 36 ~WLskeRgG~IP~~V~~sl----~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSL----SKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred HHHHHhhCCCCCHHHHHHH----HHHHHHHHHcCCCHHHHHHHHHH
Confidence 3344434566666655555 33333334445999999887654
No 236
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=23.92 E-value=1.8e+02 Score=17.83 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc--cCCCCcccHHHHHH
Q psy17263 123 ISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFCK 171 (188)
Q Consensus 123 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~ 171 (188)
++..||...+.. -...++..++..+++.++..+- ....+.|....|-.
T Consensus 1 mtk~eli~~ia~-~~~~~s~~~~~~vv~~~~~~i~~~L~~g~~V~l~gfG~ 50 (94)
T PRK00199 1 MTKSELIERLAA-RNPHLSAKDVENAVKEILEEMSDALARGDRIEIRGFGS 50 (94)
T ss_pred CCHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 356777777764 2446787777776655555442 23344566555543
No 237
>KOG3741|consensus
Probab=23.21 E-value=71 Score=27.16 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=42.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCc--ccHHHHHHHHccccc
Q psy17263 109 KFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQM--ISFDEFCKALERTDV 178 (188)
Q Consensus 109 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~--i~~~ef~~~l~~~~~ 178 (188)
..+|...|.||.--++...+.++|.. +..+..+. +..+.+|+..+ |+|.|...++.+...
T Consensus 589 DYlFHqvtedg~p~lDlaHvl~CLNK-LDAG~~Ek---------I~LvSrDE~t~IIvSY~ELK~~le~t~~ 650 (655)
T KOG3741|consen 589 DYLFHQVTEDGKPWLDLAHVLQCLNK-LDAGIQEK---------ILLVSRDELTCIIVSYKELKTILEKTFR 650 (655)
T ss_pred HhhheEeccCCChhhhHHHHHHHhhh-ccccchhh---------eeEeccCCCcEEEEEHHHHHHHHHHhhc
Confidence 45677778888888888888888877 45444333 44454555444 899999998887654
No 238
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=23.07 E-value=1.1e+02 Score=19.05 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc--cCCCCcccHHHHHH
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSIAERTILEAD--QNGDQMISFDEFCK 171 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~ef~~ 171 (188)
.++..||...+.. ...++..++..+++.++..+- ....+.|.+.+|-.
T Consensus 2 tmtk~el~~~ia~--~~~~s~~~v~~vl~~~~~~i~~~L~~g~~V~l~gfG~ 51 (99)
T PRK00285 2 TLTKADLAEALFE--KVGLSKREAKELVELFFEEIRDALENGEQVKLSGFGN 51 (99)
T ss_pred CcCHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCCEE
Confidence 4778888888875 345788887777666565552 23344566655543
No 239
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=22.59 E-value=2.1e+02 Score=17.95 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.6
Q ss_pred CCcccHHHHHHHHccc
Q psy17263 161 DQMISFDEFCKALERT 176 (188)
Q Consensus 161 ~g~i~~~ef~~~l~~~ 176 (188)
+|.|+.|||..-+...
T Consensus 37 ~~~i~~EeF~~~Lq~~ 52 (92)
T smart00549 37 NGTITAEEFTSRLQEA 52 (92)
T ss_pred hCCCCHHHHHHHHHHH
Confidence 5678999998888764
No 240
>PRK01844 hypothetical protein; Provisional
Probab=22.51 E-value=1.8e+02 Score=17.28 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17263 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 156 (188)
Q Consensus 107 ~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (188)
-.+..|+.+=+ .+-.|+.+-++..+.. .|..+|+..+.++ ++.+
T Consensus 24 ~ark~~~k~lk-~NPpine~mir~Mm~Q-MGqkPSekki~Q~----m~~m 67 (72)
T PRK01844 24 IARKYMMNYLQ-KNPPINEQMLKMMMMQ-MGQKPSQKKINQM----MSAM 67 (72)
T ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHH-hCCCccHHHHHHH----HHHH
Confidence 33445555432 3347999999999999 6999999999988 6655
No 241
>PLN02554 UDP-glycosyltransferase family protein
Probab=22.49 E-value=1.7e+02 Score=24.37 Aligned_cols=57 Identities=7% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 120 DDAISRDELLAVLHMMVGAN-ISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
.+.++.+++.+.++.++..+ --.+.+.++.+.+-+.....++-.-++++|++.+.++
T Consensus 422 ~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 422 METVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred cCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 45799999999999865311 1122234444444444455566567788888877664
No 242
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.31 E-value=1.1e+02 Score=14.62 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=10.7
Q ss_pred CCcccHHHHHHHHHH
Q psy17263 120 DDAISRDELLAVLHM 134 (188)
Q Consensus 120 ~G~I~~~el~~~l~~ 134 (188)
.|.||.+|+...-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 678888888766544
No 243
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=22.09 E-value=2.3e+02 Score=18.34 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=35.6
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 111 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 111 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
.|-++..-+. .||.+.++.++.. .|..+.+..++.+ ...+.. ++.+|.+.
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~a-aGveve~~r~k~l----vaaLeg-----~~idE~i~ 55 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEA-AGVEVEEARAKAL----VAALEG-----VDIDEVIK 55 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHH-cCCCccHHHHHHH----HHHhcC-----CCHHHHHH
Confidence 3444444444 8999999999999 7999999998888 555442 35555554
No 244
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=22.07 E-value=1.8e+02 Score=16.95 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC
Q psy17263 126 DELLAVLHMMVGANISEEQLTSIAERTILEADQN 159 (188)
Q Consensus 126 ~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (188)
..+...+..|-..++++..+...+..+++.+|.|
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~n 42 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGN 42 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 3445555555566788888888888888888755
No 245
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=22.03 E-value=92 Score=19.42 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHcccccccc
Q psy17263 145 LTSIAERTILEADQNGDQMISFDEFCKALERTDVEQK 181 (188)
Q Consensus 145 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 181 (188)
+..++..+.......+.++|+.++|+=++++.+..-.
T Consensus 36 i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl~ 72 (93)
T PF02269_consen 36 IIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKLA 72 (93)
T ss_dssp HHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHHH
Confidence 3334444444445566788999999999998765433
No 246
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=21.99 E-value=1.8e+02 Score=17.78 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 126 DELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 126 ~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
+.++..|...+...=..+++..++..+++. .+...+++++.+..+...
T Consensus 17 ~~L~~~L~~rL~e~GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~ 64 (86)
T PF10163_consen 17 ERLKELLRQRLIECGWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPK 64 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHH
Confidence 344455544222223356688887777776 334458999999888765
No 247
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.94 E-value=2.4e+02 Score=18.41 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Q psy17263 111 AFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171 (188)
Q Consensus 111 ~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 171 (188)
+|-+.-..++-.+|.+++..+|.. .|.......+..+ ++.+.. .+.++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~A-aGvevd~~~~~~f----~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGS-VGADADDDRIELL----LSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHH-cCCcccHHHHHHH----HHHHcC-----CCHHHHHH
Confidence 444444456667999999999999 7999988888877 555532 35555553
No 248
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=21.93 E-value=2.1e+02 Score=17.66 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 119 NDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
|=..||.+++-.++....-.+-.+..+.++++.|+. ++..+|+++++-.
T Consensus 24 GY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIls---------l~~~~~m~ylt~~ 72 (87)
T PF13797_consen 24 GYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILS---------LKPNDYMNYLTVE 72 (87)
T ss_pred CcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHc---------CCHHHHHHHHHHH
Confidence 444699999999986522222222446666555554 6777777776543
No 249
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.92 E-value=2.2e+02 Score=19.70 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=13.6
Q ss_pred CCCCCcCHHHhccc-ccccCCCh
Q psy17263 40 GDCGTLSREDFLRI-PELAINPL 61 (188)
Q Consensus 40 ~~~g~i~~~e~~~~-~~~~~~~~ 61 (188)
+..|+|+.+-+..+ ..++..+.
T Consensus 34 ~~~G~Ip~e~~~~iA~~l~v~~~ 56 (156)
T PRK05988 34 DEFGYVPEDAVPVIAEALNLSRA 56 (156)
T ss_pred HHcCCCCHHHHHHHHHHhCCCHH
Confidence 33577877777775 45555543
No 250
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.83 E-value=1.6e+02 Score=16.38 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Q psy17263 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEAD 157 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 157 (188)
.|..|..++...+...+|..++..-+-.+ +..++
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v~~l----L~r~G 35 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGVYRL----LKRLG 35 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHHHHH----HHHcC
Confidence 35677788888887777888888877777 65554
No 251
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=21.71 E-value=2.1e+02 Score=17.61 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 122 AISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 122 ~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
.|+.++++.+.+. ....+++++++.+
T Consensus 2 ~i~~e~i~~la~L-a~l~l~~ee~~~~ 27 (95)
T PRK00034 2 AITREEVKHLAKL-ARLELSEEELEKF 27 (95)
T ss_pred CCCHHHHHHHHHH-hCCCCCHHHHHHH
Confidence 3788888888877 6888998887766
No 252
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.66 E-value=4.4e+02 Score=21.39 Aligned_cols=77 Identities=12% Similarity=0.225 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCC--CCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccccccccc
Q psy17263 105 EQKLKFAFKMYDLDN--DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERTDVEQKM 182 (188)
Q Consensus 105 ~~~~~~~F~~~D~~~--~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 182 (188)
......+|+.+-... +..++.+++ .. ...+++..++..++.+..-..-..+...|+.++|..++.+......-
T Consensus 318 ~~~R~~Il~~~~~~~~l~~dvd~~~l---a~--~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~ 392 (398)
T PTZ00454 318 RRQKRLIFQTITSKMNLSEEVDLEDF---VS--RPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDR 392 (398)
T ss_pred HHHHHHHHHHHHhcCCCCcccCHHHH---HH--HcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccc
Confidence 334445666553322 223444433 33 34578899999997665544444555679999999999886443333
Q ss_pred cccc
Q psy17263 183 SIRF 186 (188)
Q Consensus 183 ~~~~ 186 (188)
...|
T Consensus 393 ~~~~ 396 (398)
T PTZ00454 393 DYDF 396 (398)
T ss_pred chhc
Confidence 3333
No 253
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=21.44 E-value=3.8e+02 Score=20.52 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=32.7
Q ss_pred CCCcccHHHHHHHHHHH----------------hCCCCCHHHHHHHHHHHHHHhccC-----CCCcccHHHHHHHHccc
Q psy17263 119 NDDAISRDELLAVLHMM----------------VGANISEEQLTSIAERTILEADQN-----GDQMISFDEFCKALERT 176 (188)
Q Consensus 119 ~~G~I~~~el~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~~~ 176 (188)
.+|.||..|+...+... -+..+++.+++..++.+....... ....+++++|...++..
T Consensus 31 ~~~~IT~~e~~~~~k~~~~~~~L~~~I~~~l~~~~i~vs~~evd~~i~~i~~~~~~~f~~~L~~~g~s~~~~r~~lr~~ 109 (287)
T PRK03095 31 KAGDITKDEFYEQMKTQAGKQVLNNMVMEKVLIKNYKVEDKEVDKKYDEMKKQYGDQFDTLLKQQGIKEETLKTGVRAQ 109 (287)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34567777766655331 245778888877766655544310 01125677776666554
No 254
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=21.35 E-value=1.3e+02 Score=20.43 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhhCC
Q psy17263 14 IAQIQEETVTPNQIERLYSRFTSLDR 39 (188)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~F~~~D~ 39 (188)
+..|...-+|++++..++..|...-.
T Consensus 3 FDRLl~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 3 FDRLLSAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred hhHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 44556555999999999999977533
No 255
>KOG3077|consensus
Probab=21.30 E-value=3.8e+02 Score=20.45 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHccc
Q psy17263 104 REQKLKFAFKMY-DLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176 (188)
Q Consensus 104 ~~~~~~~~F~~~-D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 176 (188)
....+...|..| |++.+..|-.+-+..++.. +|..+.+-.+.-+ .=.+..-.-|..+-++|+.-+...
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~d-lg~~p~~i~~Lvl----Awkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCED-LGVEPEDISVLVL----AWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHH-hCCCchhHHHHHH----HHHhccchhhhhhHHHHHHHHHHc
Confidence 456777778766 6666678999999999988 6766554443333 333445556778888888865543
No 256
>PHA02105 hypothetical protein
Probab=21.20 E-value=1.7e+02 Score=16.49 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHhccCC--CCcccHHHHHHHHcccc
Q psy17263 122 AISRDELLAVLHMMV--GANISEEQLTSIAERTILEADQNG--DQMISFDEFCKALERTD 177 (188)
Q Consensus 122 ~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~l~~~~ 177 (188)
.+|++|++..+..-- ...+..+-+.++ -..+.... --.++|+||-.++-=.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql----~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQL----KTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHH----HHhccccceEEEEEeHHHhcccccccc
Confidence 367777777765410 112233333332 33333332 33489999987765433
No 257
>TIGR02834 spo_ytxC putative sporulation protein YtxC. This uncharacterized protein is part of a panel of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and nowhere else.
Probab=21.08 E-value=43 Score=25.66 Aligned_cols=63 Identities=19% Similarity=0.410 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhhcccchhhhhhhchHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHhCCCCCHHH
Q psy17263 79 NFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQ 144 (188)
Q Consensus 79 ~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~ 144 (188)
.|.+|+.++.-+...+..+.+.++-... ..-|..+|.++. .|+.+++..++..+...+++.++
T Consensus 174 EYqeFI~lLryFV~~Qe~ki~~Vhvv~~--~~~f~l~D~~~~-~i~~e~l~~~~~~~~~~~i~~ed 236 (276)
T TIGR02834 174 EYQEFIKLLRYFVEIQDSRLEIVHIVVD--GGSFRLYDENGR-DLSSEELVELIDEVFESGLYIED 236 (276)
T ss_pred HHHHHHHHHHHHHhccCcCccEEEEEEE--CCeEEEEcCCCC-ccCHHHHHHHHHHHhcCCCCHHH
Confidence 4788888877655444222111111111 346778876554 79999999888775566666555
No 258
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=21.05 E-value=2.7e+02 Score=18.88 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Q psy17263 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEA 156 (188)
Q Consensus 120 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (188)
.|.++.++|...+... ..++..++..+++.++..+
T Consensus 28 ~~~mt~~el~~~Ia~~--s~~s~~dv~~vl~~l~~~i 62 (145)
T TIGR01201 28 SGVIDFEEIAELIAEE--SSLSPGDVKGIIDRLAYVL 62 (145)
T ss_pred CCCcCHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 4689999999998763 3578888877765555544
No 259
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=20.86 E-value=1.3e+02 Score=18.14 Aligned_cols=32 Identities=6% Similarity=0.026 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCcCHHHhccc
Q psy17263 22 VTPNQIERLYSRFTSLDRGDCGTLSREDFLRI 53 (188)
Q Consensus 22 ~~~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~ 53 (188)
||...+..=.-..+.+..+++|+++.+-+..+
T Consensus 12 FSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F 43 (77)
T cd08033 12 FSDENLLKDAFLLKHVRRNKEGYVPIKLIASF 43 (77)
T ss_pred cCHhhhccCHHHHHHhccCCCCcEehHHHhcc
Confidence 66666554333334455688999999988875
No 260
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=20.47 E-value=2.5e+02 Score=19.25 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=11.3
Q ss_pred CCCcCHHHhccc-ccccCCC
Q psy17263 42 CGTLSREDFLRI-PELAINP 60 (188)
Q Consensus 42 ~g~i~~~e~~~~-~~~~~~~ 60 (188)
-|+|+.+-+..+ ..++..+
T Consensus 35 ~g~ip~~~~~~iA~~l~v~~ 54 (154)
T PRK07539 35 RGWVPDEAIEAVADYLGMPA 54 (154)
T ss_pred hCCCCHHHHHHHHHHhCcCH
Confidence 577777777665 4444444
No 261
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=20.42 E-value=3e+02 Score=19.05 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHHHHhCCCCCHHHHHHH
Q psy17263 118 DNDDAISRDELLAVLHMMVGANISEEQLTSI 148 (188)
Q Consensus 118 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 148 (188)
+.+-.+|...++..+..+.+..++.+.+.+|
T Consensus 24 ~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI 54 (163)
T PF08839_consen 24 NRKETPTFQKIKPSVENMTKRRFTEEHLAQI 54 (163)
T ss_dssp HTT---BHHHHHHHHHHHHSS---HHHHHHH
T ss_pred hcCCCccHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 3444799999999999988999999888776
No 262
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=20.25 E-value=2.4e+02 Score=19.14 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=20.0
Q ss_pred CcHHHHHHHHhcc-CCHHHHHHHHHHHhhhCCCCCC
Q psy17263 9 LREEEIAQIQEET-VTPNQIERLYSRFTSLDRGDCG 43 (188)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~g 43 (188)
+|++.+..+.... +++.++..+-..|..|...+.|
T Consensus 32 i~~~~~~~iA~~l~~~~~~v~~v~tFY~~f~~~p~g 67 (148)
T TIGR01958 32 VTPEAIAAVAEMLGIPPVWVYEVATFYSMFDTEPVG 67 (148)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHhHHhhcCcCCCC
Confidence 5555555555555 6666666655555555555544
No 263
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.13 E-value=1.4e+02 Score=21.75 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHH
Q psy17263 111 AFKMYDLDNDDAISRDELLAVLHM 134 (188)
Q Consensus 111 ~F~~~D~~~~G~I~~~el~~~l~~ 134 (188)
+..-+|.|++|.++.+|+..+...
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHH
Confidence 344789999999999999998876
Done!