RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17263
(188 letters)
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 73.1 bits (180), Expect = 9e-17
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 23 TPNQIERLYSRFTSLDRGDCGTLSREDFLRIP-ELAINPLGDRIVHVFFE-EGCSDRVNF 80
T QI+ L F DR G + R + +I L NP I +F E + ++ V+F
Sbjct: 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDF 74
Query: 81 RQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANI 140
+F+ V++ K +E++L+ AFK++D D+D IS EL VL ++
Sbjct: 75 PEFLTVMSVKL--------KRGDKEEELREAFKLFDKDHDGYISIGELRRVL-----KSL 121
Query: 141 SEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
E E+ + E D++GD I ++EF K ++
Sbjct: 122 GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 56.8 bits (138), Expect = 2e-11
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 107 KLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISF 166
+L+ AF+++D D D IS DEL A L + G +SEE++ + I E D++GD I F
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEI----DEMIREVDKDGDGKIDF 55
Query: 167 DEFCKAL 173
+EF + +
Sbjct: 56 EEFLELM 62
Score = 25.6 bits (57), Expect = 5.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVLH 133
E+++ + D D D I +E L ++
Sbjct: 35 EEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 49.3 bits (118), Expect = 1e-08
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 113 KMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
K+ D D D I +EL +L + G +++E++ + E E D++GD ISF+EF +A
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKAL-GLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59
Query: 173 L 173
+
Sbjct: 60 M 60
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 47.4 bits (113), Expect = 3e-07
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 13/96 (13%)
Query: 78 VNFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVG 137
++F +F+ ++AR K K+ E+++K AFK++D D + IS EL V+ + G
Sbjct: 64 IDFPEFLTLMAR-----KMKDTDS---EEEIKEAFKVFDRDGNGFISAAELRHVMTNL-G 114
Query: 138 ANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
+++E+ + I EAD +GD I+++EF K +
Sbjct: 115 EKLTDEE----VDEMIREADVDGDGQINYEEFVKMM 146
Score = 35.1 bits (81), Expect = 0.008
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 106 QKLKFAFKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMIS 165
+ K AF ++D D D I+ EL V+ + G N +E +L + I E D +G+ I
Sbjct: 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDM----INEVDADGNGTID 65
Query: 166 FDEF----CKALERTDVEQKM 182
F EF + ++ TD E+++
Sbjct: 66 FPEFLTLMARKMKDTDSEEEI 86
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 45.1 bits (107), Expect = 2e-06
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 16/158 (10%)
Query: 22 VTPNQIERLYSRFTSLDRGDCGTLS-REDFLRIPELAINPLGDRIVHVF--FEEGCSDRV 78
+T +Q + + F D GT+ +E + + L P + I + ++ S ++
Sbjct: 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKI 70
Query: 79 NFRQFMQVLARFRPIKKSKENKLNSREQKLKFAFKMYDLDNDDAISRDELLAVLHMMVGA 138
+F +F+ ++ K + + RE+ LK AF+++D D IS L V + G
Sbjct: 71 DFEEFLDIMT-------KKLGERDPREEILK-AFRLFDDDKTGKISLKNLKRVAKEL-GE 121
Query: 139 NISEEQLTSIAERTILEADQNGDQMISFDEFCKALERT 176
I++E+L + I EAD+NGD IS +EF + +++T
Sbjct: 122 TITDEELQEM----IDEADRNGDGEISEEEFYRIMKKT 155
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 37.1 bits (87), Expect = 3e-04
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKALER 175
I+R+EL L ++ G ++SEE++ + E D +GD ISF+EFC L+R
Sbjct: 2 KGLITREELKRALALL-GISLSEEEVDIL----FREFDTDGDGKISFEEFCVLLQR 52
Score = 24.4 bits (54), Expect = 9.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 105 EQKLKFAFKMYDLDNDDAISRDELLAVL 132
E+++ F+ +D D D IS +E +L
Sbjct: 23 EEEVDILFREFDTDGDGKISFEEFCVLL 50
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 107 KLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+L+ AFK++D D D IS +EL L +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSL 29
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 33.0 bits (76), Expect = 0.011
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 112 FKMYDLDNDDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCK 171
F+ D D D IS DE L + + L I + AD + D + +EF
Sbjct: 5 FRSLDPDGDGLISGDEARPFL---GKSGLPRSVLAQIWD----LADTDKDGKLDKEEFAI 57
Query: 172 AL 173
A+
Sbjct: 58 AM 59
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 31.3 bits (72), Expect = 0.021
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 107 KLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+LK AFK +D D D IS +E +L +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 27.8 bits (63), Expect = 0.37
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 149 AERTILEADQNGDQMISFDEFCKALERT 176
+ E D++GD ISF+EF + L++
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFKELLKKL 29
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 31.2 bits (72), Expect = 0.024
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 107 KLKFAFKMYDLDNDDAISRDELLAVLHMM 135
+LK AF+++D D D I +E +L +
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 27.3 bits (62), Expect = 0.58
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 155 EADQNGDQMISFDEFCKAL 173
D++GD I F+EF L
Sbjct: 8 LFDKDGDGKIDFEEFKDLL 26
>gnl|CDD|218431 pfam05099, TerB, Tellurite resistance protein TerB. This family
contains the TerB tellurite resistance proteins from a a
number of bacteria.
Length = 140
Score = 29.1 bits (66), Expect = 0.79
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 120 DDAISRDELLAVLHMMVGA-NISEEQLTSIAERTILEADQNGDQMISFDEFCKAL-ERTD 177
D + +E A+ ++ + E+ ++ E A++ + EF +A+ + D
Sbjct: 37 DGQVDEEERQAIRRLLRSRFGLDPEEAAALIE----LAEEAEQEAPDLYEFTRAIKDHFD 92
Query: 178 VEQKMSI 184
EQ++++
Sbjct: 93 YEQRLAL 99
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 25.7 bits (58), Expect = 1.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 111 AFKMYDLDNDDAISRDELLAVL 132
F+ +D + D IS++EL +L
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 27.7 bits (63), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 11 EEEIAQIQEETVTPNQIERLYSRFTSLDRGDCGTLSREDFLRIPELAIN 59
EEEI +++ VTP+++ L L R +S D LR PE+
Sbjct: 470 EEEIERLKSTRVTPDELNELGG--DPLKRE----VSLLDLLRRPEITYE 512
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand. This
is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 26.6 bits (59), Expect = 4.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 120 DDAISRDELLAVLHMMVGANISEEQLTSIAERTILEADQNGDQMISFDEFCKAL 173
++ ++ D++ VL + + ++QL I + AD + D + F+EFC A+
Sbjct: 23 NNKLTGDQVSPVLK---NSRLPDDQLAKIWDL----ADIDSDGKLDFEEFCIAM 69
>gnl|CDD|202111 pfam02100, ODC_AZ, Ornithine decarboxylase antizyme. This family
consists of ornithine decarboxylase antizyme proteins.
The polyamine biosynthetic enzyme ornithine
decarboxylase (ODC) is degraded by the 26 S proteasome
via a ubiquitin-independent pathway. Its degradation is
greatly accelerated by association with the
polyamine-induced regulatory protein antizyme 1 (AZ1).
Length = 97
Score = 26.0 bits (58), Expect = 5.2
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 34 FTSLDRGDCGTLSREDFLRIPELAINPLG-DRIVHVFFEEGCSDRVNF-RQFMQVLARFR 91
F + G G +E + + E A L +V + F++ DR R V F
Sbjct: 19 FVFIPEGALGQGLKEGLVALLEFAEEKLECSHVV-ICFDKSRPDRAALLRTLSWV--GFE 75
Query: 92 PIK 94
+
Sbjct: 76 LVT 78
>gnl|CDD|218647 pfam05591, DUF770, Protein of unknown function (DUF770). This
family consists of several proteins of unknown function
from various bacterial species.
Length = 159
Score = 25.9 bits (58), Expect = 10.0
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 115 YDLDNDDAISRDELLAVLHMMVG--ANISEEQLTSIAERTILEADQNGDQMISFDEFCKA 172
YD++ A + EL V+ ++G + E+L + ER + D++ FD+ K
Sbjct: 14 YDVETGGAQKKVELPFVM-GVLGDLSGGPTEELPPLEERKFVNIDKDN-----FDDVMKE 67
Query: 173 LE 174
+
Sbjct: 68 MN 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.374
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,652,655
Number of extensions: 915104
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 41
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.0 bits)